id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 2313 KeyError in map chooser s.gutierrez@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: Linux-4.15.0-55-generic-x86_64-with-debian-buster-sid ChimeraX Version: 0.91 (2019-08-13) Description KeyError: 'model_5_origin.pdb map 5 #3' File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site-packages/chimerax/ui/widgets/item_chooser.py"", line 259, in value return self.item_map[text] See log for complete Python traceback Log: UCSF ChimeraX version: 0.91 (2019-08-13) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /home/sacosta/FERRITIN/EXP/volume1.map Opened volume1.map, grid size 140,140,140, pixel 1, shown at level 0.137, step 1, values float32 > open /home/sacosta/FERRITIN/UNBIASED-MD/model_5_origin.pdb Chain information for model_5_origin.pdb #2 --- Chain | Description A | No description available B C D E F G H I J K L M N O P Q R S T U V W X | No description available > toolshed show ""Fit in Map"" > toolshed show ""Map Coordinates"" Fit map model_5_origin.pdb map 5 in map volume1.map using 126161 points correlation = 0.7241, correlation about mean = 0.05014, overlap = 3031 steps = 88, shift = 2.12, angle = 4.61 degrees Position of model_5_origin.pdb map 5 (#3) relative to volume1.map (#1) coordinates: Matrix rotation and translation 0.99687415 0.07852882 -0.00866902 1.76908817 -0.07839103 0.99680635 0.01522988 0.32175792 0.00983732 -0.01450270 0.99984644 1.12283146 Axis -0.18492655 -0.11510316 -0.97598844 Axis point 2.73396998 -18.98078861 0.00000000 Rotation angle (degrees) 4.61099584 Shift along axis -1.46005725 Average map value = 0.05902 for 65101 atoms, 62998 outside contour > save /home/sacosta/FERRITIN/UNBIASED-MD/model_5_origin.cmap models #3 > open /home/sacosta/FERRITIN/UNBIASED-MD/model_10_origin.pdb Chain information for model_10_origin.pdb #4 --- Chain | Description A | No description available B C D E F G H I J K L M N O P Q R S T U V W X | No description available Fit map model_10_origin.pdb map 5 in map volume1.map using 126087 points correlation = 0.7164, correlation about mean = 0.04372, overlap = 3014 steps = 88, shift = 2.5, angle = 5.16 degrees Position of model_10_origin.pdb map 5 (#5) relative to volume1.map (#1) coordinates: Matrix rotation and translation 0.99955948 0.00776293 -0.02864577 2.16718952 -0.00530458 0.99637386 0.08491762 0.85777627 0.02920110 -0.08472826 0.99597611 0.90963136 Axis -0.94398249 -0.32188483 -0.07271323 Axis point 0.00000000 8.71862223 -0.67699282 Rotation angle (degrees) 5.15535018 Shift along axis -2.38803636 Average map value = 0.05876 for 65101 atoms, 62938 outside contour Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/ui/gui.py"", line 871, in save_action.triggered.connect(lambda arg, s=self, sess=session: s.file_save_cb(sess)) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/ui/gui.py"", line 601, in file_save_cb self.save_dialog.display(self, session) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/ui/save_dialog.py"", line 114, in display fmt.update(session, self) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/map/savemap.py"", line 67, in update self._map_menu.value = m File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/ui/widgets/item_chooser.py"", line 273, in value or (val is not None and self.value == val): File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/ui/widgets/item_chooser.py"", line 250, in value self._sleep_check() File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/ui/widgets/item_chooser.py"", line 81, in _sleep_check self._items_change() File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/ui/widgets/item_chooser.py"", line 291, in _items_change prev_value = self.value File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/ui/widgets/item_chooser.py"", line 259, in value return self.item_map[text] KeyError: 'model_5_origin.pdb map 5 #3' KeyError: 'model_5_origin.pdb map 5 #3' File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/ui/widgets/item_chooser.py"", line 259, in value return self.item_map[text] See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 430.26 OpenGL renderer: GeForce RTX 2070/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation }}} " defect closed normal General Controls fixed all ChimeraX