id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 2312 hide/show confusing yazan.abbas@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Linux-4.15.0-55-generic-x86_64-with-debian-stretch-sid ChimeraX Version: 0.91 (2019-08-13) Description (can't remember if I already reported this bug) Showing cartoons, atoms, surfaces, using either command line or GUI, is not behaving as expected. Sometimes I have to keep fiddling with hiding and showing a component multiple times until the desired compononent shows up. Sometimes I it will hide/show atoms and surfaces, but not cartoons, but after several attempts, the cartoon will eventually show up Log: UCSF ChimeraX version: 0.91 (2019-08-13) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /home/yazan/Dropbox/Abbas_etal_2019_brainV- ATPase/Figures/Video1/movie1_190813.cxs opened ChimeraX session > view position #7 sameAsModels #10 > hide #10/K1 target abp > hide #10/K2 target abp > hide #10/K3 target abp > view frame1 > set maxFrameRate 25 > windowsize 1080 1080 > view frame1 > movie record supersample 3 > wait 1 > coordset #10 1,181 > roll 0.133,0.0389,0.989 -1.988950276243094 181 coordinateSystem #10 models #7 center 160,176,0 > wait 181 > wait 1 > movie stop > movie encode test.mp4 quality high Movie saved to test.mp4 > view frame1 Unknown command: regen > alias regen close #7; volume zone #4 nearAtoms (#1 & ~#1/s1) range 2 invert true minimalBounds true modelId #7; wait 1; volume #7 level 0.5 step 1 color #B2B2FF; wait 1; surface dust #7 size 40 > regen > view frame1 > cofr Center of rotation: 181.15 180.79 181.45 fixed > view position #7 sameAsModels #10 > wait 1 > set maxFrameRate 25 > windowsize 1080 1080 > view frame1 > movie record supersample 3 > wait 1 > coordset #10 1,181 > roll 0.133,0.0389,0.989 1.988950276243094 181 coordinateSystem #10 models #7 center 160,176,0 > wait 181 > wait 1 > movie stop > movie encode test.mp4 quality high Movie saved to test.mp4 > regen > view frame1 > view position #7 sameAsModels #10 > wait 1 > cofr Center of rotation: 181.15 180.79 181.45 fixed > set maxFrameRate 25 > windowsize 1080 1080 > view frame1 > movie record supersample 3 > wait 1 > coordset #10 1,181 > roll 0.133,0.0389,0.989 1.988950276243094 181 coordinateSystem #10 models #7 center 160,176,0 > wait 181 > perframe ""turn y -3.6"" frames 50 > wait 50 > coordset #10 1,181 > roll 0.133,0.0389,0.989 1.988950276243094 181 coordinateSystem #10 models #7 center 160,176,0 > wait 181 > perframe ""turn y -3.6"" frames 50 > wait 50 > wait 1 > movie stop > movie encode test_full2.mp4 quality high Movie saved to test_full2.mp4 > select up 16 atoms, 14 bonds, 1 model selected > select up 265 atoms, 274 bonds, 1 model selected > select up 5681 atoms, 5816 bonds, 1 model selected > hide sel atoms > select #10/f:70@CZ 1 atom, 1 model selected > select up 11 atoms, 11 bonds, 1 model selected > select up 216 atoms, 221 bonds, 1 model selected > select up 496 atoms, 507 bonds, 1 model selected > hide sel atoms > show #10 atoms > select clear > view frame1 > regen > set maxFrameRate 25 > windowsize 1080 1080 > view frame1 > movie record supersample 3 > wait 1 > coordset #10 1,181 > roll 0.133,0.0389,0.989 1.988950276243094 181 coordinateSystem #10 models #7 center 160,176,0 > wait 181 > perframe ""turn y -3.6"" frames 50 > wait 50 > view position #7 sameAsModels #10 > wait 1 > coordset #10 1,181 > roll 0.133,0.0389,0.989 1.988950276243094 181 coordinateSystem #10 models #7 center 160,176,0 > wait 181 > perframe ""turn y -3.6"" frames 50 > wait 50 > wait 1 > movie stop > movie encode test_full2.mp4 quality high Movie saved to test_full2.mp4 > coordset slider #10 > view position #7 sameAsModels #10 > wait 1 > set maxFrameRate 25 > windowsize 1080 1080 > view frame1 > movie record supersample 3 > wait 1 > coordset #10 1,181 Unknown command: roll0.17922030,0.02970853,0.98336030 129.12807513 coordinateSystem #10 models #7 center 146.73268993,176.43921115,0.00000000 > wait 181 > perframe ""turn y -3.6"" frames 50 > wait 50 > view position #7 sameAsModels #10 > wait 1 > coordset #10 1,181 > roll 0.17922030,0.02970853,0.98336030 129.12807513 coordinateSystem #10 models #7 center 146.73268993,176.43921115,0.00000000 > wait 181 > perframe ""turn y -3.6"" frames 50 > wait 50 > wait 1 > movie stop > movie encode test_full3.mp4 quality high Movie saved to test_full3.mp4 > stop > regen > view position #7 sameAsModels #10 > wait 1 > set maxFrameRate 25 > windowsize 1080 1080 > view frame1 > movie record supersample 3 > wait 1 > coordset #10 1,181 > roll 0.17922030,0.02970853,0.98336030 -1.988950276243094 181 coordinateSystem #10 models #7 center 146.73268993,176.43921115,0.00000000 > wait 181 > perframe ""turn y -3.6"" frames 50 > wait 50 > view position #7 sameAsModels #10 > wait 1 > coordset #10 1,181 > roll 0.17922030,0.02970853,0.98336030 -1.988950276243094 181 coordinateSystem #10 models #7 center 146.73268993,176.43921115,0.00000000 > wait 181 > perframe ""turn y -3.6"" frames 50 > wait 50 > wait 1 > movie stop > movie encode test_full3.mp4 quality high Movie saved to test_full3.mp4 > view position #7 sameAsModels #10 > wait 1 > set maxFrameRate 25 > windowsize 1080 1080 > view frame1 > movie record supersample 3 > wait 1 > coordset #10 1,181 > roll 0.17922030,0.02970853,0.98336030 1.988950276243094 181 coordinateSystem #10 models #7 center 146.73268993,176.43921115,0.00000000 > wait 181 > perframe ""turn y -3.6"" frames 50 > wait 50 > view position #7 sameAsModels #10 > wait 1 > coordset #10 1,181 > roll 0.17922030,0.02970853,0.98336030 1.988950276243094 181 coordinateSystem #10 models #7 center 146.73268993,176.43921115,0.00000000 > wait 181 > perframe ""turn y -3.6"" frames 50 > wait 50 > wait 1 > movie stop > movie encode test_full3.mp4 quality high Movie saved to test_full3.mp4 > regen > view position #7 sameAsModels #10 > turn 0.10538144,-0.01332825,0.99434255 108.22343402 coordinateSystem #10 models #7 center 167.83361743,188.93439760,0.00000000 > move 0.10538144,-0.01332825,0.99434255 0.03427099 coordinateSystem #10 models #7 > turn 0.17922030,0.02970853,0.98336030 129.12807513 coordinateSystem #10 models #7 center 146.73268993,176.43921115,0.00000000 > move 0.17922030,0.02970853,0.98336030 -1.25194283 coordinateSystem #10 models #7 > turn 0.11417876,0.07470527,0.99064743 123.00295166 coordinateSystem #10 models #7 center 165.68116908,164.10104013,0.00000000 > move 0.11417876,0.07470527,0.99064743 1.16060753 coordinateSystem #10 models #7 > regen > hide #!7 models > show #!1 models > show #!2 models > show #!3 models > hide atoms > show #10/s1 cartoons > show #1/s1 cartoons > show #2/s1 cartoons > show #3/s1 cartoons > hide #!10 models > hide #!1 models > show #!1 models > show #1/s1 cartoons > select #1/s1 337 atoms, 347 bonds, 1 model selected > show #1/s1 target abp > hide #1/s1 target abp > show #1/s1 target c > hide #1/s1 target c > show #1/s1 target abp > show #1/s1 target abp > hide #1/s1 target abp > hide #1/s1 target c > hide #1/s1 target c > hide #!1 models > show #!1 models > hide #1 cartoons > show #1/s1 cartoons > select clear OpenGL version: 3.3.0 NVIDIA 418.56 OpenGL renderer: GeForce RTX 2070/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation }}} " defect closed normal Graphics can't reproduce Elaine Meng all ChimeraX