id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
2229	Save mmCIF selected atoms only	goddard@…	Greg Couch	"{{{
The following bug report has been submitted:
Platform:        Darwin-18.6.0-x86_64-i386-64bit
ChimeraX Version: 0.91 (2019-07-16)
Description
Want to be able to save selected atoms only in mmCIF format

save file.cif model #1 selectedOnly true

This works for PDB format but selectedOnly is not available for mmCIF.

This problem was reported by Jing He.

Log:
UCSF ChimeraX version: 0.91 (2019-07-16)  
© 2016-2019 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open 4v68 format mmCIF fromDatabase pdb

Summary of feedback from opening 4v68 fetched from pdb  
---  
warning | Unable to infer polymer connectivity due to unspecified label_seq_id
for residue ""PHA"" near line 170882  
  
4v68 title:  
T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-
Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map. [more
info...]  
  
Chain information for 4v68 #1  
---  
Chain | Description  
A0 | MRNA codon  
AA | 16S rRNA  
AB | 30S ribosomal protein S2  
AC | 30S ribosomal protein S3  
AD | 30S ribosomal protein S4  
AE | 30S ribosomal protein S5  
AF | 30S ribosomal protein S6  
AG | 30S ribosomal protein S7  
AH | 30S ribosomal protein S8  
AI | 30S ribosomal protein S9  
AJ | 30S ribosomal protein S10  
AK | 30S ribosomal protein S11  
AL | 30S ribosomal protein S12  
AM | 30S ribosomal protein S13  
AN | 30S ribosomal protein S14  
AO | 30S ribosomal protein S15  
AP | 30S ribosomal protein S16  
AQ | 30S ribosomal protein S17  
AR | 30S ribosomal protein S18  
AS | 30S ribosomal protein S19  
AT | 30S ribosomal protein S20  
AU | 30S ribosomal protein Thx  
AV | P-site TRNA  
AW | E-site TRNA  
AX | synthetic MRNA  
AY | At-site TRNA  
AZ | Elongation factor Tu-A  
B0 | 50S ribosomal protein L27  
B1 | 50S ribosomal protein L28  
B2 | 50S ribosomal protein L29  
B3 | 50S ribosomal protein L30  
B4 | 50S ribosomal protein L31  
B5 | 50S ribosomal protein L32  
B6 | 50S ribosomal protein L33  
B7 | 50S ribosomal protein L34  
B8 | 50S ribosomal protein L35  
B9 | 50S ribosomal protein L36  
BA | 23S rRNA  
BB | 5S rRNA  
BC | 50S ribosomal protein L1  
BD | 50S ribosomal protein L2  
BE | 50S ribosomal protein L3  
BF | 50S ribosomal protein L4  
BG | 50S ribosomal protein L5  
BH | 50S ribosomal protein L6  
BI | 50S ribosomal protein L9  
BL | 50S ribosomal protein L11  
BN | 50S ribosomal protein L13  
BO | 50S ribosomal protein L14  
BP | 50S ribosomal protein L15  
BQ | 50S ribosomal protein L16  
BR | 50S ribosomal protein L17  
BS | 50S ribosomal protein L18  
BT | 50S ribosomal protein L19  
BU | 50S ribosomal protein L20  
BV | 50S ribosomal protein L21  
BW | 50S ribosomal protein L22  
BX | 50S ribosomal protein L23  
BY | 50S ribosomal protein L24  
BZ | 50S ribosomal protein L25  
  
Non-standard residues in 4v68 #1  
---  
BME — β-mercaptoethanol  
MAU — N-methyl kirromycin (aurodox; 1-methylmocimycin; antibiotic X-5108;
goldinodox; goldinomycin)  
  
  




OpenGL version: 4.1 ATI-2.9.26
OpenGL renderer: AMD Radeon Pro 580 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.

}}}
"	enhancement	closed	normal		Input/Output		fixed						all	ChimeraX