id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 2168 Graphics context menu: spurious drag select; also delete hydrogens tic20@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: Linux-3.10.0-957.12.2.el7.x86_64-x86_64-with-centos-7.6.1810-Core ChimeraX Version: 0.91 (2019-07-02) Description I really like the new (or new to me, at least!) ctrl-double-click mouse mode to bring up a context menu. A minor bug, though: if I ctrl-double-click on an atom, then (after releasing ctrl) click somewhere outside the drop-down menu to dismiss it, ChimeraX acts as if I've done a ctrl-left-drag and selects everything between the original double-click point and the final click. Also, a suggestion: for the ""delete atom(s)"" options in the menu, it would probably make sense to automatically remove any hydrogens attached to the deleted heavy atoms. Log: Startup Messages --- warning | 'clip' is a prefix of an existing command 'clipper' UCSF ChimeraX version: 0.91 (2019-07-02) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open 1a0m format mmCIF fromDatabase pdb structureFactors true Summary of feedback from opening 1a0m fetched from pdb --- warning | No free flags detected in this dataset! Automatically generated a new random set with 484 free from 9265 observed reflections. You should save your data to a new MTZ file and use this for any future rebuilding/refinement. notes | Resolution: 1.0944213038232693 1a0m title: 1.1 angstrom crystal structure of A-conotoxin [TYR15]-epi [more info...] Chain information for 1a0m --- Chain | Description 1.3/A 1.3/B | α-conotoxin [TYR15]-epi Non-standard residues in 1a0m #1.3 --- NH2 — amino group > select /B:16@O 1 atom, 1 model selected > select clear > select /B:11@O 1 atom, 1 model selected > select clear > select /B:11@OD1 1 atom, 1 model selected > select /B:11@OD1 1 atom, 1 model selected > select clear > select /B:11@OD1 1 atom, 1 model selected > select clear > select /B:11@OD1 1 atom, 1 model selected > select /B:10@SD 1 atom, 1 model selected > select clear > select /B:10@SD 1 atom, 1 model selected > select clear > select /B:10@SD 1 atom, 1 model selected > select clear > select clear > select /B:10@CG 1 atom, 1 model selected > select /B:10@SD 1 atom, 1 model selected > select clear > select /B:7@CG 1 atom, 1 model selected > select clear > addh Summary of feedback from adding hydrogens to 1a0m #1.3 --- warning | Not adding hydrogens to /A ARG 7 CB because it is missing heavy-atom bond partners notes | Termini for 1a0m (#1.3) chain A determined from SEQRES records Termini for 1a0m (#1.3) chain B determined from SEQRES records Chain-initial residues that are actual N termini: /A GLY 1, /B GLY 1 Chain-initial residues that are not actual N termini: Chain-final residues that are actual C termini: /A NH2 17, /B NH2 17 Chain-final residues that are not actual C termini: 107 hydrogen bonds 271 hydrogens added > select /B:7@CG 1 atom, 1 model selected > delete atoms sel > select /B:7@HG2 1 atom, 1 model selected > delete atoms sel OpenGL version: 3.3.0 NVIDIA 415.27 OpenGL renderer: TITAN Xp/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation }}} " defect closed normal General Controls fixed all ChimeraX