id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
2160	QXcbWindow::setNetWmStateOnUnmappedWindow() called on mapped window	tic20@…	Greg Couch	"{{{
The following bug report has been submitted:
Platform:        Linux-3.10.0-957.12.2.el7.x86_64-x86_64-with-centos-7.6.1810-Core
ChimeraX Version: 0.91 (2019-07-02)
Description
Another Qt warning popped up while working through the first few steps of the ISOLDE intro tutorial.

Log:
UCSF ChimeraX version: 0.91 (2019-07-02)  
© 2016-2019 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  
Successfully installed
'ChimeraX_ISOLDE-1.0b3.dev1-cp37-cp37m-linux_x86_64.whl'  
Looking in indexes: https://pypi.org/simple,
https://cxtoolshed.rbvi.ucsf.edu/pypi/  
Processing
/home/tic20/.cache/ChimeraX/0.91/installers/ChimeraX_ISOLDE-1.0b3.dev1-cp37-cp37m-linux_x86_64.whl  
Requirement already satisfied, skipping upgrade: ChimeraX-Clipper>=0.9.6 in
/home/tic20/.local/share/ChimeraX/0.91/site-packages (from ChimeraX-
ISOLDE==1.0b3.dev1) (0.9.6)  
Requirement already satisfied, skipping upgrade: ChimeraX-Core==0.91 in
/opt/UCSF/ChimeraX-daily/lib/python3.7/site-packages (from ChimeraX-
ISOLDE==1.0b3.dev1) (0.91)  
Requirement already satisfied, skipping upgrade: ChimeraX-Atomic>=1.0 in
/opt/UCSF/ChimeraX-daily/lib/python3.7/site-packages (from ChimeraX-
ISOLDE==1.0b3.dev1) (1.0)  
Installing collected packages: ChimeraX-ISOLDE  
Found existing installation: ChimeraX-ISOLDE 1.0b3.dev1  
Uninstalling ChimeraX-ISOLDE-1.0b3.dev1:  
Successfully uninstalled ChimeraX-ISOLDE-1.0b3.dev1  
Successfully installed ChimeraX-ISOLDE-1.0b3.dev1  
Lock 140362576490000 acquired on
/home/tic20/.cache/ChimeraX/0.91/toolshed/bundle_info.cache.lock  
Lock 140362576490000 released on
/home/tic20/.cache/ChimeraX/0.91/toolshed/bundle_info.cache.lock  
  

> isolde tutorial

> open 1a0m structureFactors true

Summary of feedback from opening 1a0m fetched from pdb  
---  
warning | No free flags detected in this dataset! Automatically generated a
new random set with 498 free from 9265 observed reflections. You should save
your data to a new MTZ file and use this for any future rebuilding/refinement.  
notes | Resolution: 1.0944213038232693  
  
1a0m title:  
1.1 angstrom crystal structure of A-conotoxin [TYR15]-epi [more info...]  
  
Chain information for 1a0m  
---  
Chain | Description  
1.3/A 1.3/B | α-conotoxin [TYR15]-epi  
  
Non-standard residues in 1a0m #1.3  
---  
NH2 — amino group  
  
  

> save /home/tic20/Desktop/1a0m.mtz #1

Writing data to: '/*/*/[FOBS, SIGFOBS]'  

> set bgColor white

internal error: void QXcbWindow::setNetWmStateOnUnmappedWindow() called on
mapped window  




OpenGL version: 3.3.0 NVIDIA 415.27
OpenGL renderer: TITAN Xp/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

}}}
"	defect	closed	normal		Window Toolkit		can't reproduce			2161			all	ChimeraX