id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 2114 self._positions is None gokhan_tolun@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Windows-10-10.0.17763 ChimeraX Version: 0.91 (2019-06-25) Description Opened a DNA molecule and chose Tube/slab from the Nucleotides tab. Log: UCSF ChimeraX version: 0.91 (2019-06-25) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""C:\\\Users\\\GokhanTolun\\\OneDrive - University of Wollongong\\\Teaching\\\2018\\\CHEM325\\\CHEM325_Lectures\\\Structure-of-DNA, Nucleic Acids as drug target\\\Figures\\\1aio.pdb"" Summary of feedback from opening C:\Users\GokhanTolun\OneDrive - University of Wollongong\Teaching\2018\CHEM325\CHEM325_Lectures\Structure-of-DNA, Nucleic Acids as drug target\Figures\1aio.pdb --- notes | Combining 2 symmetry atoms into HOH /B:76 O Combining 2 symmetry atoms into HOH /B:51 O Combining 2 symmetry atoms into HOH /B:79 O Combining 2 symmetry atoms into HOH /B:52 O Combining 2 symmetry atoms into HOH /B:53 O 26 messages similar to the above omitted 1aio.pdb title: Crystal structure of A double-stranded DNA containing the major adduct of the anticancer drug cisplatin [more info...] Chain information for 1aio.pdb #1 --- Chain | Description A C | DNA (5'-D(*CP*CP*(bru)P*CP*TP*[Pt(NH3)2(GP*GP) ]*TP*CP*TP*CP*C)-3') B D | DNA (5'-D(*GP*GP*ap*GP*ap*CP*CP*ap*GP*ap*GP*G)-3') Non-standard residues in 1aio.pdb #1 --- BRU — 5-bromo-2'-deoxyuridine-5'-monophosphate CPT — cisplatin (diammine(dichloro)platinum) > nucleotides selAtoms ladder > nucleotides selAtoms stubs > nucleotides selAtoms ladder > nucleotides selAtoms tube/slab shape muffler > nucleotides selAtoms stubs > nucleotides selAtoms ladder > nucleotides selAtoms tube/slab shape ellipsoid > nucleotides selAtoms tube/slab shape box > nucleotides selAtoms slab > style nucleic & selAtoms stick Changed 972 atom styles An error occurred in drawing the scene. Redrawing graphics is now stopped to avoid a continuous stream of error messages. To restart graphics use the command ""graphics restart"" after changing the settings that caused the error. Traceback (most recent call last): File ""C:\Program Files\ChimeraX_190625\bin\lib\site- packages\chimerax\core\updateloop.py"", line 72, in draw_new_frame view.draw(check_for_changes = False) File ""C:\Program Files\ChimeraX_190625\bin\lib\site- packages\chimerax\core\graphics\view.py"", line 164, in draw self._draw_scene(camera, drawings) File ""C:\Program Files\ChimeraX_190625\bin\lib\site- packages\chimerax\core\graphics\view.py"", line 226, in _draw_scene draw_opaque(r, opaque_drawings) File ""C:\Program Files\ChimeraX_190625\bin\lib\site- packages\chimerax\core\graphics\drawing.py"", line 1418, in draw_opaque _draw_multiple(drawings, renderer, Drawing.OPAQUE_DRAW_PASS) File ""C:\Program Files\ChimeraX_190625\bin\lib\site- packages\chimerax\core\graphics\drawing.py"", line 1429, in _draw_multiple d.draw(renderer, draw_pass) File ""C:\Program Files\ChimeraX_190625\bin\lib\site- packages\chimerax\core\graphics\drawing.py"", line 711, in draw if not self.display: File ""C:\Program Files\ChimeraX_190625\bin\lib\site- packages\chimerax\core\graphics\drawing.py"", line 334, in get_display return self._any_displayed_positions and len(self._positions) > 0 TypeError: object of type 'NoneType' has no len() OpenGL version: 3.3.0 NVIDIA 419.67 OpenGL renderer: GeForce GTX 1060/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation }}} " defect closed normal Graphics can't reproduce Greg Couch all ChimeraX