id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
2098	Ephemeral convexity display	brandon.scott@…	Tom Goddard	"{{{
The following bug report has been submitted:
Platform:        Windows-10-10.0.17134
ChimeraX Version: 0.9 (2019-06-03)
Description
I am currently trying to get the 'measure convexity' function to save/play as a vseries but the convexity display is consistently overwritten/lost. Additionally, every time I try to change a setting such as transparency, the convexity display is lost.

Log:
UCSF ChimeraX version: 0.9 (2019-06-03)  
© 2016-2019 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
X:/Macropinocytosis/ChimeraProject/9_PosterChild/Cropped/*cell_CamB_ch1*.tif

Opened map series
cell_CamB_ch1_stack0000_488nm_0000000msec_0010986113msecAbs_COR_decon.tif, 100
images, grid size 936,660,274, pixel 1, shown at level 327, step 4, values
uint16  

> volume #1 step 2

> volume #1 level 60

> color #1 blue

> volume #1 style surface

> volume #1 transparency 0

> set bgColor slategray

> close #1

> open
X:/Macropinocytosis/ChimeraProject/9_PosterChild/Cropped/*cell_CamB_ch1*.tif

Opened map series
cell_CamB_ch1_stack0000_488nm_0000000msec_0010986113msecAbs_COR_decon.tif, 100
images, grid size 936,660,274, pixel 1, shown at level 327, step 4, values
uint16  

> volume #1 step 2

> volume #1 level 60

> set bgColor slategray

> lighting depthCue false

> material dull

> lighting full

> volume #1 projectionMode 3d

> set bgColor slategray

> measure convexity #1

Convexity -4.92 - 6.28, mean 0.26, std deviation 1.18 at 672719 vertices of
surface 1.1.1  

Missing or invalid ""surfaces"" argument: invalid surfaces specifier  

> perframe ""measure convexity #$1""

Convexity -4.92 - 6.28, mean 0.26, std deviation 1.18 at 672719 vertices of
surface 1.1.1  
Convexity -4.91 - 5.65, mean 0.266, std deviation 1.18 at 676926 vertices of
surface 1.2.1  
Convexity -5.26 - 5.64, mean 0.26, std deviation 1.18 at 679068 vertices of
surface 1.3.1  
Convexity -5.11 - 5.58, mean 0.254, std deviation 1.17 at 671715 vertices of
surface 1.4.1  
Convexity -5.58 - 5.63, mean 0.265, std deviation 1.19 at 663132 vertices of
surface 1.5.1  
Convexity -5.63 - 6.28, mean 0.273, std deviation 1.21 at 655581 vertices of
surface 1.6.1  
Convexity -5.19 - 5.7, mean 0.28, std deviation 1.19 at 650314 vertices of
surface 1.7.1  
Convexity -5.6 - 5.64, mean 0.285, std deviation 1.2 at 651244 vertices of
surface 1.8.1  

> perframe ""measure convexity #$1""

Convexity -4.92 - 6.28, mean 0.26, std deviation 1.18 at 672719 vertices of
surface 1.1.1  
Convexity -4.91 - 5.65, mean 0.266, std deviation 1.18 at 676926 vertices of
surface 1.2.1  
Convexity -5.26 - 5.64, mean 0.26, std deviation 1.18 at 679068 vertices of
surface 1.3.1  
Convexity -5.11 - 5.58, mean 0.254, std deviation 1.17 at 671715 vertices of
surface 1.4.1  
Convexity -5.58 - 5.63, mean 0.265, std deviation 1.19 at 663132 vertices of
surface 1.5.1  
Convexity -5.63 - 6.28, mean 0.273, std deviation 1.21 at 655581 vertices of
surface 1.6.1  
Convexity -5.19 - 5.7, mean 0.28, std deviation 1.19 at 650314 vertices of
surface 1.7.1  
Convexity -5.6 - 5.64, mean 0.285, std deviation 1.2 at 651244 vertices of
surface 1.8.1  

> select #1.2

3 models selected  

> ~select #1.2

Nothing selected  

> volume #1 transparency .5




OpenGL version: 3.3.0 NVIDIA 431.02
OpenGL renderer: Quadro M4000/PCIe/SSE2
OpenGL vendor: NVIDIA Corporation

}}}
"	enhancement	closed	normal		Surface		not a bug						all	ChimeraX