id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 20376 Crash in QObject::event chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-13.3-arm64-arm-64bit ChimeraX Version: 1.12rc202605201705 (2026-05-20 17:05:57 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Thread 0x0000000296043000 (most recent call first): File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 327 in wait File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 629 in wait File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 765 in wait File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 768 in get File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/toolshed/__init__.py"", line 1679 in run File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/tasks.py"", line 323 in _run_function File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x0000000295037000 (most recent call first): File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 579 in _handle_results File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x000000029402b000 (most recent call first): File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 531 in _handle_tasks File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x000000029301f000 (most recent call first): File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/selectors.py"", line 415 in select File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/connection.py"", line 948 in wait File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 502 in _wait_for_updates File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 522 in _handle_workers File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x0000000292013000 (most recent call first): File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x0000000291007000 (most recent call first): File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x000000028727f000 (most recent call first): File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x0000000286273000 (most recent call first): File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x0000000285267000 (most recent call first): File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x000000028425b000 (most recent call first): File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x000000028324f000 (most recent call first): File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x0000000282243000 (most recent call first): File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/ssl.py"", line 1382 in do_handshake File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/ssl.py"", line 1104 in _create File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/ssl.py"", line 517 in wrap_socket File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/urllib3/util/ssl_.py"", line 477 in _ssl_wrap_socket_impl File ""/private/var/folders/25/k45y0drs4tx8nt_53h0tnpqr0000gn/T/AppTranslocation/35FF6BEC-260E-4401-AFF3-307C80514595/d/ChimeraX-1.12-rc2026.05.21.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/urllib3/util/ssl_.py"", line 433 in ssl_wrap_socket File 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""base"" : 0, ""uuid"" : ""00000000-0000-0000-0000-000000000000"" } ], ""sharedCache"" : { ""base"" : 6670532608, ""size"" : 3539501056, ""uuid"" : ""581a6955-d455-3735-973b-5233bd5dd16e"" }, ""vmSummary"" : ""ReadOnly portion of Libraries: Total=1.7G resident=0K(0%) swapped_out_or_unallocated=1.7G(100%) Writable regions: Total=2.1G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.1G(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 128K 1 Activity Tracing 256K 1 CG backing stores 2176K 4 CG image 5152K 7 CG raster data 3280K 4 ColorSync 592K 26 CoreAnimation 144K 9 CoreGraphics 32K 2 CoreUI image data 2240K 13 Foundation 16K 1 Kernel Alloc Once 1424K 4 MALLOC 313.4M 70 MALLOC guard page 192K 10 MALLOC_MEDIUM (reserved) 704.0M 6 reserved VM address space (unallocated) MALLOC_NANO (reserved) 384.0M 1 reserved VM address space (unallocated) Mach message 64K 2 PROTECTED_MEMORY 16K 1 STACK GUARD 704K 44 Stack 390.0M 45 Stack Guard 56.0M 1 VM_ALLOCATE 144.2M 76 VM_ALLOCATE (reserved) 160.0M 1 reserved VM address space (unallocated) __AUTH 1844K 386 __AUTH_CONST 28.7M 619 __CTF 824 1 __DATA 19.3M 724 __DATA_CONST 56.9M 733 __DATA_DIRTY 2036K 245 __FONT_DATA 2352 1 __GLSLBUILTINS 5174K 1 __INFO_FILTER 8 1 __LINKEDIT 827.2M 113 __OBJC_RO 66.2M 1 __OBJC_RW 2011K 1 __TEXT 884.8M 753 dyld private memory 320K 4 mapped file 217.4M 44 shared memory 1200K 22 =========== ======= ======= TOTAL 4.2G 3978 TOTAL, minus reserved VM space 3.0G 3978 "", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""logWritingSignature"" : ""e7f5d615e0423a2772dfaa007c00b2dbc5eef5c3"", ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""6112d17137f5d11121dcd4e2"", ""factorPackIds"" : { }, ""deploymentId"" : 240000570 }, { ""rolloutId"" : ""62c751b6bcb0435c2153fe92"", ""factorPackIds"" : { ""SIRI_UNDERSTANDING_ASR_ASSISTANT"" : ""6552c036dc598031005cc0f4"", ""SIRI_UNDERSTANDING_MORPHUN"" : ""64e514ddc83b9a3d50649ddc"" }, ""deploymentId"" : 240000366 } ], ""experiments"" : [ ] } } ===== Log before crash start ===== Startup Messages --- note | available bundle cache has not been initialized yet You can double click a model's Name or ID in the model panel to edit those fields UCSF ChimeraX version: 1.12rc202605201705 (2026-05-20) © 2016-2026 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.12rc202605201705 (2026-05-20) © 2016-2026 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 83.1 OpenGL renderer: Apple M1 OpenGL vendor: Apple Python: 3.11.9 Locale: UTF-8 Qt version: PyQt6 6.10.2, Qt 6.10.0 Qt runtime version: 6.10.1 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Air Model Identifier: MacBookAir10,1 Model Number: MGN63LL/A Chip: Apple M1 Total Number of Cores: 8 (4 performance and 4 efficiency) Memory: 8 GB System Firmware Version: 8422.100.650 OS Loader Version: 8422.100.650 Software: System Software Overview: System Version: macOS 13.3 (22E252) Kernel Version: Darwin 22.4.0 Time since boot: 59 days, 12 minutes Graphics/Displays: Apple M1: Chipset Model: Apple M1 Type: GPU Bus: Built-In Total Number of Cores: 7 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: accessible-pygments: 0.0.5 aiohappyeyeballs: 2.6.2 aiohttp: 3.13.1 aiosignal: 1.4.0 alabaster: 1.0.0 annotated-types: 0.7.0 anyio: 4.13.0 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.1 attrs: 26.1.0 babel: 2.18.0 beautifulsoup4: 4.13.5 blockdiag: 3.0.0 blosc2: 4.3.1 bs4: 0.0.2 build: 1.3.0 certifi: 2025.7.14 cftime: 1.6.5 charset-normalizer: 3.4.7 ChimeraX-AddCharge: 1.5.20 ChimeraX-AddH: 2.2.8 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.2 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 3.2 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Animations: 1.0 ChimeraX-Aniso: 1.3.2 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.67.1 ChimeraX-AtomicLibrary: 14.4 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.1 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.6.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4.1 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.4 ChimeraX-Cluster: 1.0 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3.1 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.12rc202605201705 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.2.1 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.3 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.4 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.8.2 ChimeraX-Label: 1.5 ChimeraX-LightingGUI: 1.0 ChimeraX-ListInfo: 1.3.1 ChimeraX-Log: 1.2.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.3 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchAlign: 1.1 ChimeraX-MatchMaker: 2.4 ChimeraX-MCopy: 1.0 ChimeraX-MCPServer: 0.2.0 ChimeraX-MDcrds: 2.19 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-Minimize: 1.3.8 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.23 ChimeraX-ModelPanel: 1.6.1 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0.1 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.15.4 ChimeraX-OpenFold: 1.0 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.13 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.5 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.4 ChimeraX-ProfileGrids: 1.6 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.8.2 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.3 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.2 ChimeraX-Scenes: 0.3.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.12 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.18 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SNFG: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.3 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.4 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.50.7 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDock: 1.6.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 click: 8.4.0 colorama: 0.4.6 comm: 0.2.3 contourpy: 1.3.3 coverage: 7.14.0 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.2.4 debugpy: 1.8.20 decorator: 5.3.1 docutils: 0.21.2 executing: 2.2.1 filelock: 3.19.1 fonttools: 4.63.0 frozenlist: 1.8.0 funcparserlib: 2.0.0a0 glfw: 2.10.0 grako: 3.16.5 h11: 0.16.0 h5py: 3.16.0 html2text: 2025.4.15 httpcore: 1.0.9 httpx: 0.28.1 httpx-sse: 0.4.3 idna: 3.15 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 2.0.0 iniconfig: 2.3.0 ipykernel: 7.1.0 ipython: 9.9.0 ipython_pygments_lexers: 1.1.1 jedi: 0.19.2 Jinja2: 3.1.6 jsonschema: 4.26.0 jsonschema-specifications: 2025.9.1 jupyter_client: 8.8.0 jupyter_core: 5.9.1 kiwisolver: 1.5.0 line_profiler: 5.0.0 lxml: 6.0.2 lz4: 4.3.2 Markdown: 3.8.2 MarkupSafe: 3.0.3 matplotlib: 3.10.7 matplotlib-inline: 0.2.2 mcp: 1.18.0 msgpack: 1.1.1 multidict: 6.7.1 narwhals: 2.21.2 ndindex: 1.10.1 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.14.1 numpy: 1.26.4 OpenMM: 8.4.0 openvr: 1.26.701 packaging: 25.0 ParmEd: 4.2.2 parso: 0.8.7 pep517: 0.13.1 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 11.3.0 pip: 25.2 pkginfo: 1.12.1.2 platformdirs: 4.9.6 plotly: 6.7.0 pluggy: 1.6.0 prompt_toolkit: 3.0.52 propcache: 0.5.2 psutil: 7.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pybind11: 3.0.1 pycollada: 0.8 pydantic: 2.13.4 pydantic-settings: 2.14.1 pydantic_core: 2.46.4 pydata-sphinx-theme: 0.18.0 pydicom: 2.4.4 Pygments: 2.18.0 pynmrstar: 3.5.1 pynrrd: 1.0.0 PyOpenGL: 3.1.10 PyOpenGL-accelerate: 3.1.10 pyopenxr: 1.1.4501 pyparsing: 3.3.2 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.10.2 PyQt6-Qt6: 6.10.1 PyQt6-WebEngine-commercial: 6.10.0 PyQt6-WebEngine-Qt6: 6.10.1 PyQt6_sip: 13.10.3 pytest: 9.0.3 pytest-cov: 7.1.0 python-dateutil: 2.9.0.post0 python-dotenv: 1.2.2 python-multipart: 0.0.29 pyzmq: 27.1.0 qtconsole: 5.7.0 QtPy: 2.4.3 qtshim: 1.2.2 RandomWords: 0.4.0 referencing: 0.37.0 requests: 2.32.5 roman-numerals: 4.1.0 rpds-py: 0.30.0 scipy: 1.14.0 setuptools: 80.9.0 sfftk-rw: 0.8.1 six: 1.17.0 snowballstemmer: 3.0.1 sortedcontainers: 2.4.0 soupsieve: 2.8.3 Sphinx: 9.0.4 sphinx-autodoc-typehints: 3.6.1 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 sse-starlette: 3.4.4 stack-data: 0.6.3 starlette: 1.0.0 superqt: 0.7.6 tables: 3.10.2 tcia_utils: 3.2.1 threadpoolctl: 3.6.0 tifffile: 2025.3.13 tinyarray: 1.2.5 tornado: 6.5.5 tqdm: 4.67.3 traitlets: 5.14.3 typing-inspection: 0.4.2 typing_extensions: 4.15.0 Unidecode: 1.4.0 urllib3: 2.7.0 uvicorn: 0.47.0 wcwidth: 0.7.0 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 yarl: 1.24.2 }}} " defect closed normal Window Toolkit duplicate chimera-programmers all ChimeraX