id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 20246 glClear: invalid framebuffer operation on statusbar expose chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-26.2-arm64-arm-64bit ChimeraX Version: 1.12.dev202604290127 (2026-04-29 01:27:48 UTC) Description Replace this text with list of actions that caused this problem to occur Log: UCSF ChimeraX version: 1.12.dev202604290127 (2026-04-29) © 2016-2026 Regents of the University of California. All rights reserved. > open ""/Users/miguel/Tresorit/Avista/Projects/AAVmers/Linked_AAVs/8FZ0_VRs > MB.cxs"" format session Log from Mon Apr 27 11:43:14 2026UCSF ChimeraX version: 1.12.dev202602120348 (2026-02-12) © 2016-2026 Regents of the University of California. All rights reserved. > open ""/Users/miguel/Tresorit/Avista/Projects/AAVmers/Linked_AAVs/8FZ0_VRs > 2.cxs"" Log from Mon Apr 27 10:11:34 2026UCSF ChimeraX version: 1.11.dev202511122144 (2025-11-12) © 2016-2025 Regents of the University of California. All rights reserved. > open /Users/tht13/Documents/VRs/8FZ0_VRs.cxs Log from Thu Apr 23 13:23:45 2026UCSF ChimeraX version: 1.11.dev202511122144 (2025-11-12) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open 9rwg 9rwg title: Pentameric AAV2 Rep40 in complex with AAV8 [more info...] Chain information for 9rwg #1 --- Chain | Description | UniProt A B E F G H I Q R S U V W X Y | Capsid protein | Q8JQF8_9VIRU 1-738 152-738 350-738 a b c d e | Protein Rep68 | REP68_AAV2S 1-336 Non-standard residues in 9rwg #1 --- ADP — adenosine-5'-diphosphate MG — magnesium ion > open 9zcw 9zcw title: Cryo-EM structure of the engineered vector AAV2.ATX002 [more info...] Chain information for 9zcw #2 --- Chain | Description | UniProt 1 2 3 4 5 6 7 8 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z a b c d e f g h i j k l m n o p q r s t u v w x y z | Engineered AAV2 capsid protein VP3 | CAPSD_AAV2S 1-542 > ui tool show Matchmaker > matchmaker #!1 to #2 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 9zcw, chain r (#2) with 9rwg, chain R (#1), sequence alignment score = 2270 RMSD between 418 pruned atom pairs is 0.559 angstroms; (across all 433 pairs: 1.088) > select #1/a,b,c,d 8715 atoms, 8921 bonds, 1093 residues, 1 model selected > hide sel atoms > select ~sel 281146 atoms, 289377 bonds, 103 pseudobonds, 35070 residues, 4 models selected > hide sel atoms > show sel cartoons > color #2 #e7ef44ff > select clear > show atoms > style stick Changed 289861 atom styles > color byhetero > select #1/a,b,c,d 8715 atoms, 8921 bonds, 1093 residues, 1 model selected > hide sel cartoons > hide sel atoms > hide #2 models > select #1/V:330@CD 1 atom, 1 residue, 1 model selected > view clip false > show target m > undo > select clear > close #1 > open 9rwg 9rwg title: Pentameric AAV2 Rep40 in complex with AAV8 [more info...] Chain information for 9rwg #1 --- Chain | Description | UniProt A B E F G H I Q R S U V W X Y | Capsid protein | Q8JQF8_9VIRU 1-738 152-738 350-738 a b c d e | Protein Rep68 | REP68_AAV2S 1-336 Non-standard residues in 9rwg #1 --- ADP — adenosine-5'-diphosphate MG — magnesium ion > show #!1 surfaces > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C59DA54B-64B1-4F40-8E6B-33CF2F96963B/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_remodeled_0001.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C59DA54B-64B1-4F40-8E6B-33CF2F96963B/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_remodeled_0001.pdb --- warnings | Ignored bad PDB record found on line 24175 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24176 #BEGIN_POSE_ENERGIES_TABLE MATNLQRGNRQAATGTY_aav2_trimer_INPUT_remodeled_0001.pdb Ignored bad PDB record found on line 24177 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24178 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24179 pose -9534.16 9011.16 6130.92 39.6692 379.849 -156.361 -1314.44 1594.07 -97.6146 -320.122 -175.499 -39.4595 0 36.0975 7962.07 -124.625 0 298.767 346.377 14036.7 1566 messages similar to the above omitted Chain information for MATNLQRGNRQAATGTY_aav2_trimer_INPUT_remodeled_0001.pdb #3 --- Chain | Description A B C | No description available Computing secondary structure > hide #!1 models > view #3 clip false > sequence chain > #2/1,2,3,4,5,6,7,8,A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c,d,e,f,g,h,i,j,k,l,m,n,o,p,q,r,s,t,u,v,w,x,y,z Alignment identifier is 1 > sequence chain #1/A,B,E,F,G,H,I,Q,R,S,U,V,W,X,Y Alignment identifier is 2 > sequence chain #1/a,b,c,d,e Alignment identifier is 3 > sequence chain #3/A,B,C Alignment identifier is 4 > close session > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C59DA54B-64B1-4F40-8E6B-33CF2F96963B/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_remodeled_0001.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C59DA54B-64B1-4F40-8E6B-33CF2F96963B/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_remodeled_0001.pdb --- warnings | Ignored bad PDB record found on line 24175 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24176 #BEGIN_POSE_ENERGIES_TABLE MATNLQRGNRQAATGTY_aav2_trimer_INPUT_remodeled_0001.pdb Ignored bad PDB record found on line 24177 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24178 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24179 pose -9534.16 9011.16 6130.92 39.6692 379.849 -156.361 -1314.44 1594.07 -97.6146 -320.122 -175.499 -39.4595 0 36.0975 7962.07 -124.625 0 298.767 346.377 14036.7 1566 messages similar to the above omitted Chain information for MATNLQRGNRQAATGTY_aav2_trimer_INPUT_remodeled_0001.pdb #1 --- Chain | Description A B C | No description available Computing secondary structure > sequence chain #1/A,B,C Alignment identifier is 1 > select /B:890 14 atoms, 13 bonds, 1 residue, 1 model selected > select clear > select /A:363-364/B:882-883/C:1401-1402 81 atoms, 78 bonds, 6 residues, 1 model selected > select /A:363-364/B:882-883/C:1401-1402 81 atoms, 78 bonds, 6 residues, 1 model selected > close session > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/696EAAAF-E689-46AC-9028-87AD1CC93EB8/MATNLQRGNRQAATGTY__1.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/696EAAAF-E689-46AC-9028-87AD1CC93EB8/MATNLQRGNRQAATGTY__1.pdb --- warnings | Ignored bad PDB record found on line 24175 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24176 #BEGIN_POSE_ENERGIES_TABLE Ignored bad PDB record found on line 24177 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24178 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24179 pose -9534.16 9011.16 6130.92 39.6692 379.849 -156.361 -1314.44 1594.07 -97.6146 -320.122 -175.499 -39.4595 0 36.0975 7962.07 -124.625 0 298.767 346.377 14036.7 3264 messages similar to the above omitted Chain information for MATNLQRGNRQAATGTY__1.pdb #1 --- Chain | Description A B C | No description available Computing secondary structure > sequence chain #1/A,B,C Alignment identifier is 1 > select /A:363/B:882/C:1401 48 atoms, 45 bonds, 3 residues, 1 model selected > select /A:363-380/B:882-899/C:1401-1418 789 atoms, 786 bonds, 54 residues, 1 model selected > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C58F556D-277F-435F-BCEC-114B11BF4400/VSTNLQAGNAAAESTGRERAAAQAATADV_aav2_trimer_INPUT_remodeled_0001.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C58F556D-277F-435F-BCEC-114B11BF4400/VSTNLQAGNAAAESTGRERAAAQAATADV_aav2_trimer_INPUT_remodeled_0001.pdb --- warnings | Ignored bad PDB record found on line 24586 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24587 #BEGIN_POSE_ENERGIES_TABLE VSTNLQAGNAAAESTGRERAAAQAATADV_aav2_trimer_INPUT_remodeled_0001.pdb Ignored bad PDB record found on line 24588 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24589 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24590 pose -9668.85 8392.96 6231.38 39.7301 385.159 -161.71 -1340.89 1594.07 -96.3484 -326.241 -178.584 -39.4595 0 36.1935 8012.57 -123.566 0 297.232 1018.35 14072 1602 messages similar to the above omitted Chain information for VSTNLQAGNAAAESTGRERAAAQAATADV_aav2_trimer_INPUT_remodeled_0001.pdb #2 --- Chain | Description A B C | No description available Computing secondary structure > close #1 > sequence chain #2/A,B,C Alignment identifier is 1 > select clear [Repeated 1 time(s)] > select /A:381 24 atoms, 23 bonds, 1 residue, 1 model selected > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/B9EC3596-103F-4EC2-87E7-E67581DDFB7B/MATNNQRGNRAPATGTY__1.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/B9EC3596-103F-4EC2-87E7-E67581DDFB7B/MATNNQRGNRAPATGTY__1.pdb --- warnings | Ignored bad PDB record found on line 24169 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24170 #BEGIN_POSE_ENERGIES_TABLE Ignored bad PDB record found on line 24171 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24172 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24173 pose -9534.05 10284.8 6133.47 39.5952 379.321 -156.579 -1320.7 2174.61 -97.6146 -320.122 -175.508 -39.4595 0 35.642 7929.54 -111.613 0 290.432 381.106 15892.9 3264 messages similar to the above omitted Chain information for MATNNQRGNRAPATGTY__1.pdb #1 --- Chain | Description A B C | No description available Computing secondary structure > close #2 > sequence chain #1/A,B,C Alignment identifier is 1 > close session > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/AC426003-632A-4C19-84F1-1C5D8A4EC7DE/MATNLQRGNRQAATGTY__1.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/AC426003-632A-4C19-84F1-1C5D8A4EC7DE/MATNLQRGNRQAATGTY__1.pdb --- warnings | Ignored bad PDB record found on line 24175 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24176 #BEGIN_POSE_ENERGIES_TABLE Ignored bad PDB record found on line 24177 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24178 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24179 pose -9534.16 9011.16 6130.92 39.6692 379.849 -156.361 -1314.44 1594.07 -97.6146 -320.122 -175.499 -39.4595 0 36.0975 7962.07 -124.625 0 298.767 346.377 14036.7 3264 messages similar to the above omitted Chain information for MATNLQRGNRQAATGTY__1.pdb #1 --- Chain | Description A B C | No description available Computing secondary structure > sequence chain #1/A,B,C Alignment identifier is 1 > close session > open 9zcw 9zcw title: Cryo-EM structure of the engineered vector AAV2.ATX002 [more info...] Chain information for 9zcw #1 --- Chain | Description | UniProt 1 2 3 4 5 6 7 8 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z a b c d e f g h i j k l m n o p q r s t u v w x y z | Engineered AAV2 capsid protein VP3 | CAPSD_AAV2S 1-542 > show cartoons > hide atoms > select /Z:268 8 atoms, 7 bonds, 1 residue, 1 model selected > view clip false > show target m > view clip false > select clear > close session > open 6nz0 6nz0 title: Cryo-EM structure of AAV-2 in complex with AAVR PKD domains 1 and 2 [more info...] Chain information for 6nz0 #1 --- Chain | Description | UniProt A | Capsid protein VP1 | CAPSD_AAV2S 1-735 Z | Dyslexia-associated protein KIAA0319-like protein | K319L_HUMAN 311-597 Non-standard residues in 6nz0 #1 --- MG — magnesium ion 6nz0 mmCIF Assemblies --- 1| complete icosahedral assembly 2| icosahedral asymmetric unit 3| icosahedral pentamer 4| icosahedral 23 hexamer 5| icosahedral asymmetric unit, std point frame > sym #1 assembly 1 Made 60 graphical clones for 6nz0 assembly 1 > view > open /Users/tht13/Downloads/emd_0553.map.gz File reader requires uncompressed file; '/Users/tht13/Downloads/emd_0553.map.gz' is compressed > open /Users/tht13/Downloads/emd_0553.map Opened emd_0553.map as #3, grid size 384,384,384, pixel 1.05, shown at level 0.139, step 2, values float32 > volume #3 level 0.02652 > volume #3 level 0.1036 > show #!2 atoms > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/4859BE1F-3DBE-4007-A046-30C30A2542AA/MATNLQRGNRQAATGTY_aav2_trimer_INPUTremodelled_0001.pdb Chain information for MATNLQRGNRQAATGTY_aav2_trimer_INPUTremodelled_0001.pdb #4 --- Chain | Description A B C | No description available Computing secondary structure > close #1-3 > sequence chain #4/A,B,C Alignment identifier is 1 > select clear > select /B:371 14 atoms, 13 bonds, 1 residue, 1 model selected > select /A-C:363 48 atoms, 45 bonds, 3 residues, 1 model selected > select /A-C:363-364 96 atoms, 93 bonds, 6 residues, 1 model selected > select /A-C:363-364,377-379 240 atoms, 234 bonds, 15 residues, 1 model selected > color sel red > close session > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C9485B72-7C23-4D1C-A55E-3D798D8FD5C2/MATNNQRGNRAPATGTY__2.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C9485B72-7C23-4D1C-A55E-3D798D8FD5C2/MATNNQRGNRAPATGTY__2.pdb --- warnings | Ignored bad PDB record found on line 24169 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24170 #BEGIN_POSE_ENERGIES_TABLE Ignored bad PDB record found on line 24171 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24172 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24173 pose -9534.05 10284.8 6133.47 39.5952 379.321 -156.579 -1320.7 2174.61 -97.6146 -320.122 -175.508 -39.4595 0 35.642 7929.54 -111.613 0 290.432 381.106 15892.9 3264 messages similar to the above omitted Chain information for MATNNQRGNRAPATGTY__2.pdb #1 --- Chain | Description A B C | No description available Computing secondary structure > sequence chain #1/A,B,C Alignment identifier is 1 > close > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/6A4CFD2F-D49E-484B-873F-5452301FDE3B/MATNLQRGNRQAATGTY__2.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/6A4CFD2F-D49E-484B-873F-5452301FDE3B/MATNLQRGNRQAATGTY__2.pdb --- warnings | Ignored bad PDB record found on line 24175 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24176 #BEGIN_POSE_ENERGIES_TABLE Ignored bad PDB record found on line 24177 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24178 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24179 pose -9534.16 9011.16 6130.92 39.6692 379.849 -156.361 -1314.44 1594.07 -97.6146 -320.122 -175.499 -39.4595 0 36.0975 7962.07 -124.625 0 298.767 346.377 14036.7 3264 messages similar to the above omitted Chain information for MATNLQRGNRQAATGTY__2.pdb #1 --- Chain | Description A B C | No description available Computing secondary structure > sequence chain #1/A,B,C Alignment identifier is 1 > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/79143B61-ECF6-4A90-9956-DEC3FCA5CBC8/VSTNLQRGNKMEADGRQAATADV__2.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/79143B61-ECF6-4A90-9956-DEC3FCA5CBC8/VSTNLQRGNKMEADGRQAATADV__2.pdb --- warnings | Ignored bad PDB record found on line 24439 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24440 #BEGIN_POSE_ENERGIES_TABLE Ignored bad PDB record found on line 24441 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24442 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24443 pose -9626.29 12978.4 6243.41 39.7166 385.008 -162.004 -1315.09 1594.07 -93.7199 -325.997 -175.499 -39.4595 0 37.0542 8005.28 -120.77 0 275.366 1041.23 18740.7 3300 messages similar to the above omitted Chain information for VSTNLQRGNKMEADGRQAATADV__2.pdb #2 --- Chain | Description A B C | No description available Computing secondary structure > close #1 > sequence chain #2/A,B,C Alignment identifier is 1 > select /A:363/B:888/C:1413 48 atoms, 45 bonds, 3 residues, 1 model selected > select /A:363-385/B:888-910/C:1413-1435 996 atoms, 993 bonds, 69 residues, 1 model selected > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/9B5E8858-C6CC-41C0-B77B-6BB8A4064915/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0004.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/9B5E8858-C6CC-41C0-B77B-6BB8A4064915/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0004.pdb --- warnings | Ignored bad PDB record found on line 24175 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24176 #BEGIN_POSE_ENERGIES_TABLE MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0004.pdb Ignored bad PDB record found on line 24177 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24178 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24179 pose -9079.89 20865.9 5586.89 19.6416 339.536 -150.27 -1550.83 1394.11 -97.6146 -320.122 -148.08 -83.1021 0 36.0975 2236.46 -124.625 0 298.767 1024.3 20247.2 1566 messages similar to the above omitted Chain information for MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0004.pdb #1 --- Chain | Description A B C | No description available Computing secondary structure > close > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/9B5E8858-C6CC-41C0-B77B-6BB8A4064915/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0004.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/9B5E8858-C6CC-41C0-B77B-6BB8A4064915/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0004.pdb --- warnings | Ignored bad PDB record found on line 24175 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24176 #BEGIN_POSE_ENERGIES_TABLE MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0004.pdb Ignored bad PDB record found on line 24177 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24178 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24179 pose -9079.89 20865.9 5586.89 19.6416 339.536 -150.27 -1550.83 1394.11 -97.6146 -320.122 -148.08 -83.1021 0 36.0975 2236.46 -124.625 0 298.767 1024.3 20247.2 1566 messages similar to the above omitted Chain information for MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0004.pdb #1 --- Chain | Description A B C | No description available Computing secondary structure > sequence chain #1/A,B,C Alignment identifier is 1 > select /A-C:441 33 atoms, 30 bonds, 3 residues, 1 model selected > select /A-C:441-453 594 atoms, 591 bonds, 39 residues, 1 model selected > close session > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C7E5F42B-07DE-48B6-9BB5-ED2293F52428/MATNNQRGNRAPATGTY_aav2_trimer_INPUT_fixbb_0004.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C7E5F42B-07DE-48B6-9BB5-ED2293F52428/MATNNQRGNRAPATGTY_aav2_trimer_INPUT_fixbb_0004.pdb --- warnings | Ignored bad PDB record found on line 24169 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24170 #BEGIN_POSE_ENERGIES_TABLE MATNNQRGNRAPATGTY_aav2_trimer_INPUT_fixbb_0004.pdb Ignored bad PDB record found on line 24171 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24172 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24173 pose -9065.7 22108.6 5564.1 19.7388 335.39 -153.082 -1538.87 1974.65 -97.6146 -320.122 -131.878 -85.6713 0 35.642 2228.46 -111.613 0 290.432 1055.92 22108.3 1566 messages similar to the above omitted Chain information for MATNNQRGNRAPATGTY_aav2_trimer_INPUT_fixbb_0004.pdb #1 --- Chain | Description A B C | No description available Computing secondary structure > sequence chain #1/A,B,C Alignment identifier is 1 > close session > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/20D8A92C-14FB-419E-8689-B342E33CBB6A/MATNNQRGNRAPATGTY_aav2_trimer_INPUT_fixbb_0002.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/20D8A92C-14FB-419E-8689-B342E33CBB6A/MATNNQRGNRAPATGTY_aav2_trimer_INPUT_fixbb_0002.pdb --- warnings | Ignored bad PDB record found on line 24178 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24179 #BEGIN_POSE_ENERGIES_TABLE MATNNQRGNRAPATGTY_aav2_trimer_INPUT_fixbb_0002.pdb Ignored bad PDB record found on line 24180 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24181 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24182 pose -9134.26 27867.1 5620.24 18.9283 347.547 -151.472 -1548.29 1401.25 -97.6146 -320.122 -153.912 -86.5529 0 35.9598 2231.38 -126.404 0 275.217 1025.61 27204.6 1566 messages similar to the above omitted Chain information for MATNNQRGNRAPATGTY_aav2_trimer_INPUT_fixbb_0002.pdb #1 --- Chain | Description A B C | No description available Computing secondary structure > sequence chain #1/A,B,C Alignment identifier is 1 > select /A-C:442 51 atoms, 48 bonds, 3 residues, 1 model selected > select /A-C:442-458 735 atoms, 738 bonds, 51 residues, 1 model selected > select clear > close session > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/0157699A-2324-4861-9939-283BC9E91B1F/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0001.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/0157699A-2324-4861-9939-283BC9E91B1F/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0001.pdb --- warnings | Ignored bad PDB record found on line 24202 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24203 #BEGIN_POSE_ENERGIES_TABLE MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0001.pdb Ignored bad PDB record found on line 24204 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24205 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24206 pose -9102.01 27303.4 5603.19 19.8261 345.853 -155.665 -1552.93 1394.11 -97.6146 -320.122 -143.696 -85.658 0 35.8657 2262.14 -125.807 0 284.799 1024.78 26690.5 1566 messages similar to the above omitted Chain information for MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0001.pdb #1 --- Chain | Description A B C | No description available Computing secondary structure > sequence chain #1/A,B,C Alignment identifier is 1 > select /A-C:442-443 81 atoms, 78 bonds, 6 residues, 1 model selected > select /A-C:442-459 801 atoms, 801 bonds, 54 residues, 1 model selected > show sel atoms > select clear > show atoms > close session > open > /Users/tht13/Documents/JanusBind/binder_selections/complex_pdbs_for_BCHO/2_3_complex.pdb Chain information for 2_3_complex.pdb #1 --- Chain | Description A | No description available B | No description available Computing secondary structure > open > /Users/tht13/Documents/JanusBind/binder_selections/complex_pdbs_for_BCHO/4_0_complex.pdb Chain information for 4_0_complex.pdb #2 --- Chain | Description A | No description available B | No description available > open > /Users/tht13/Documents/JanusBind/binder_selections/complex_pdbs_for_BCHO/6_5_complex.pdb Chain information for 6_5_complex.pdb #3 --- Chain | Description A | No description available B | No description available > open > /Users/tht13/Documents/JanusBind/binder_selections/complex_pdbs_for_BCHO/9_1_complex.pdb Chain information for 9_1_complex.pdb #4 --- Chain | Description A | No description available B | No description available > open > /Users/tht13/Documents/JanusBind/binder_selections/complex_pdbs_for_BCHO/9_5_complex.pdb Chain information for 9_5_complex.pdb #5 --- Chain | Description A | No description available B | No description available > open > /Users/tht13/Documents/JanusBind/binder_selections/complex_pdbs_for_BCHO/12_0_complex.pdb Chain information for 12_0_complex.pdb #6 --- Chain | Description A | No description available B | No description available > open > /Users/tht13/Documents/JanusBind/binder_selections/complex_pdbs_for_BCHO/12_1_complex.pdb Chain information for 12_1_complex.pdb #7 --- Chain | Description A | No description available B | No description available > open > /Users/tht13/Documents/JanusBind/binder_selections/complex_pdbs_for_BCHO/16_6_complex.pdb Chain information for 16_6_complex.pdb #8 --- Chain | Description A | No description available B | No description available Computing secondary structure [Repeated 6 time(s)] > hide #!2-8 target m > show #!2 target m > hide #!1 target m > show #!3 target m > hide #!2 target m > show #!4 target m > hide #!3 target m > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C21D5D8A-6861-4C49-B5AC-989A5B303235/MATNNQRGNRAPATGTY_aav2_trimer_INPUT_fixbb_0001.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C21D5D8A-6861-4C49-B5AC-989A5B303235/MATNNQRGNRAPATGTY_aav2_trimer_INPUT_fixbb_0001.pdb --- warnings | Ignored bad PDB record found on line 24178 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24179 #BEGIN_POSE_ENERGIES_TABLE MATNNQRGNRAPATGTY_aav2_trimer_INPUT_fixbb_0001.pdb Ignored bad PDB record found on line 24180 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24181 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24182 pose -9109.96 27827.9 5606.23 19.0777 343.34 -152.146 -1539.26 1401.25 -97.6146 -320.122 -148.487 -83.9707 0 35.9598 2240.15 -126.404 0 275.217 1025.61 27196.8 1566 messages similar to the above omitted Chain information for MATNNQRGNRAPATGTY_aav2_trimer_INPUT_fixbb_0001.pdb #9 --- Chain | Description A B C | No description available Computing secondary structure > hide #9 target m > show #!5 target m > hide #!4 target m > show #!1 models > hide #!1 models > show #!6 target m > hide #!5 target m > show #!7 target m > hide #!6 target m > show #!8 target m > hide #!7 target m > close session > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C21D5D8A-6861-4C49-B5AC-989A5B303235/MATNNQRGNRAPATGTY_aav2_trimer_INPUT_fixbb_0001.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C21D5D8A-6861-4C49-B5AC-989A5B303235/MATNNQRGNRAPATGTY_aav2_trimer_INPUT_fixbb_0001.pdb --- warnings | Ignored bad PDB record found on line 24178 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24179 #BEGIN_POSE_ENERGIES_TABLE MATNNQRGNRAPATGTY_aav2_trimer_INPUT_fixbb_0001.pdb Ignored bad PDB record found on line 24180 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24181 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24182 pose -9109.96 27827.9 5606.23 19.0777 343.34 -152.146 -1539.26 1401.25 -97.6146 -320.122 -148.487 -83.9707 0 35.9598 2240.15 -126.404 0 275.217 1025.61 27196.8 1566 messages similar to the above omitted Chain information for MATNNQRGNRAPATGTY_aav2_trimer_INPUT_fixbb_0001.pdb #1 --- Chain | Description A B C | No description available Computing secondary structure > show atoms > sequence chain #1/A,B,C Alignment identifier is 1 > select /A-C:442 51 atoms, 48 bonds, 3 residues, 1 model selected > select /A-C:442-458 735 atoms, 738 bonds, 51 residues, 1 model selected > color sel red > color sel byhetero > close session > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/88EEE323-16EF-4C2A-A5DD-8FFCD4E2359A/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0001.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/88EEE323-16EF-4C2A-A5DD-8FFCD4E2359A/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0001.pdb --- warnings | Ignored bad PDB record found on line 24202 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24203 #BEGIN_POSE_ENERGIES_TABLE MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0001.pdb Ignored bad PDB record found on line 24204 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24205 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24206 pose -9142.33 27473.5 5586.36 20.256 345.859 -163.731 -1535.06 1394.11 -97.6146 -320.122 -144.743 -76.4443 0 35.8657 2226.12 -125.807 0 284.799 1024.78 26785.8 1566 messages similar to the above omitted Chain information for MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0001.pdb #1 --- Chain | Description A B C | No description available Computing secondary structure > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/D8670FE3-1458-43F0-9D4A-A4302DADBB73/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0002.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/D8670FE3-1458-43F0-9D4A-A4302DADBB73/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0002.pdb --- warnings | Ignored bad PDB record found on line 24202 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24203 #BEGIN_POSE_ENERGIES_TABLE MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0002.pdb Ignored bad PDB record found on line 24204 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24205 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24206 pose -9137.39 27376.2 5608.71 19.7773 343.596 -153.244 -1561.98 1394.11 -97.6146 -320.122 -149.24 -78.6113 0 35.8657 2279.79 -125.807 0 284.799 1024.78 26743.7 1566 messages similar to the above omitted Chain information for MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0002.pdb #2 --- Chain | Description A B C | No description available > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/7EB74E3F-60D2-4A20-AF35-CE9175A8835F/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0003.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/7EB74E3F-60D2-4A20-AF35-CE9175A8835F/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0003.pdb --- warnings | Ignored bad PDB record found on line 24202 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24203 #BEGIN_POSE_ENERGIES_TABLE MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0003.pdb Ignored bad PDB record found on line 24204 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24205 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24206 pose -9107.41 27280.4 5619.67 19.8533 346.127 -154.067 -1571.06 1394.11 -97.6146 -320.122 -143.696 -88.34 0 35.8657 2267.53 -125.807 0 284.799 1024.78 26665.1 1566 messages similar to the above omitted Chain information for MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0003.pdb #3 --- Chain | Description A B C | No description available > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/F6D18785-0E57-45FA- > AF05-3909E1C4FFF0/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0004.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/F6D18785-0E57-45FA- AF05-3909E1C4FFF0/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0004.pdb --- warnings | Ignored bad PDB record found on line 24202 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24203 #BEGIN_POSE_ENERGIES_TABLE MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0004.pdb Ignored bad PDB record found on line 24204 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24205 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24206 pose -9118.51 27312.6 5610.77 19.7221 343.823 -154.829 -1536.77 1394.11 -97.6146 -320.122 -141.868 -84.4239 0 35.8657 2265.97 -125.807 0 284.799 1024.78 26712.4 1566 messages similar to the above omitted Chain information for MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0004.pdb #4 --- Chain | Description A B C | No description available > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/7F167021-1332-401C-B2F6-2975B40923B3/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0005.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/7F167021-1332-401C-B2F6-2975B40923B3/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0005.pdb --- warnings | Ignored bad PDB record found on line 24202 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24203 #BEGIN_POSE_ENERGIES_TABLE MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0005.pdb Ignored bad PDB record found on line 24204 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24205 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24206 pose -9107.12 27291.2 5596.4 19.851 340.101 -158.632 -1538.15 1394.11 -97.6146 -320.122 -137.483 -86.3939 0 35.8657 2247.12 -125.807 0 284.799 1024.78 26662.9 1566 messages similar to the above omitted Chain information for MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0005.pdb #5 --- Chain | Description A B C | No description available Computing secondary structure [Repeated 3 time(s)] > show atoms > hide #2-5 target m > show #5 target m > hide #1 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #3 target m > hide #4 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #4 target m > hide #5 target m > show #3 target m > hide #4 target m > show #2 target m > hide #3 target m > show #1 target m > hide #2 target m > show #5 target m > hide #1 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > hide #2 cartoons > show #2 cartoons > show target m > close > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/FB507953-9E60-4E3C-9BF4-7DEC42B128DC/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0001.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/FB507953-9E60-4E3C-9BF4-7DEC42B128DC/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0001.pdb --- warnings | Ignored bad PDB record found on line 24202 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24203 #BEGIN_POSE_ENERGIES_TABLE MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0001.pdb Ignored bad PDB record found on line 24204 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24205 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24206 pose -9101 6065.81 5590.78 21.0089 350.14 -185.857 -1709.35 885.409 -97.6146 -320.122 -213.557 -147.733 0 35.8657 3138.43 -125.807 1.69807 284.799 1024.78 5497.68 1566 messages similar to the above omitted Chain information for MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0001.pdb #1 --- Chain | Description A B C | No description available Computing secondary structure > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/9353D0E7-53AB-43D7-9E6F-4326BE143DE2/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0002.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/9353D0E7-53AB-43D7-9E6F-4326BE143DE2/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0002.pdb --- warnings | Ignored bad PDB record found on line 24202 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24203 #BEGIN_POSE_ENERGIES_TABLE MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0002.pdb Ignored bad PDB record found on line 24204 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24205 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24206 pose -9120.79 6360.95 5571.48 23.4994 349.474 -189.189 -1664.09 886.937 -97.6146 -320.122 -205.638 -120.26 0 35.8657 3110.3 -125.807 0.47178 284.799 1024.78 5805.05 1566 messages similar to the above omitted Chain information for MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0002.pdb #2 --- Chain | Description A B C | No description available > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/B6B3940D-8DF8-49AE-9E79-7C4749211A85/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0003.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/B6B3940D-8DF8-49AE-9E79-7C4749211A85/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0003.pdb --- warnings | Ignored bad PDB record found on line 24202 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24203 #BEGIN_POSE_ENERGIES_TABLE MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0003.pdb Ignored bad PDB record found on line 24204 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24205 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24206 pose -9089.09 6107.77 5617.34 21.5488 345.214 -185.105 -1706.42 886.593 -97.6146 -320.122 -216.524 -156.561 0 35.8657 3154.18 -125.807 1.76138 284.799 1024.78 5582.59 1566 messages similar to the above omitted Chain information for MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0003.pdb #3 --- Chain | Description A B C | No description available > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/FC1D1858-99AF-4CD6-9629-3C2B0ED4845F/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0004.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/FC1D1858-99AF-4CD6-9629-3C2B0ED4845F/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0004.pdb --- warnings | Ignored bad PDB record found on line 24202 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24203 #BEGIN_POSE_ENERGIES_TABLE MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0004.pdb Ignored bad PDB record found on line 24204 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24205 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24206 pose -9110.9 6350.37 5585.84 23.3535 350.675 -182.743 -1695.28 885.427 -97.6146 -320.122 -210.238 -132.813 0 35.8657 3111.04 -125.807 0.5193 284.799 1024.78 5777.15 1566 messages similar to the above omitted Chain information for MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0004.pdb #4 --- Chain | Description A B C | No description available > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/1A50251F-08B1-4377-86CA-4B64567839A6/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0005.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/1A50251F-08B1-4377-86CA-4B64567839A6/MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0005.pdb --- warnings | Ignored bad PDB record found on line 24202 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24203 #BEGIN_POSE_ENERGIES_TABLE MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0005.pdb Ignored bad PDB record found on line 24204 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24205 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24206 pose -9096.84 6071.2 5590.53 21.8544 346.342 -187.106 -1701.54 887.577 -97.6146 -320.122 -212.923 -142.508 0 35.8657 3155.4 -125.807 1.55993 284.799 1024.78 5535.44 1566 messages similar to the above omitted Chain information for MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0005.pdb #5 --- Chain | Description A B C | No description available Computing secondary structure [Repeated 3 time(s)] > show atoms > open 3NTT 3ntt title: Structural insights of Adeno-Associated virus 5. A gene therapy Vector for Cystic Fibrosis [more info...] Chain information for 3ntt #6 --- Chain | Description | UniProt A | Capsid protein | Q9YIJ1_9VIRU 1-724 Non-standard residues in 3ntt #6 --- GOL — glycerol (glycerin; propane-1,2,3-triol) NA — sodium ion 3ntt mmCIF Assemblies --- 1| complete icosahedral assembly 2| icosahedral asymmetric unit 3| icosahedral pentamer 4| icosahedral 23 hexamer 5| icosahedral asymmetric unit, std point frame 6| crystal asymmetric unit, crystal frame > ui tool show Matchmaker > matchmaker #6 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0001.pdb, chain A (#1) with 3ntt, chain A (#6), sequence alignment score = 1631.9 RMSD between 447 pruned atom pairs is 0.716 angstroms; (across all 509 pairs: 3.260) > sym #6 assembly 1 Made 60 graphical clones for 3ntt assembly 1 > view > ui tool show Matchmaker > matchmaker #7 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker MATNLQRGNRQAATGTY_aav2_trimer_INPUT_fixbb_0001.pdb, chain A (#1) with 3ntt assembly 1, chain A (#7), sequence alignment score = 1631.9 RMSD between 447 pruned atom pairs is 0.716 angstroms; (across all 509 pairs: 3.260) > close #7 > view clip false > show #6 models > show atoms > hide #1 models > hide #2 models > hide #3 models > hide #4 models > color #5-6 byhetero [Repeated 1 time(s)] > hide #5 models > show #5 models > show #6 target m > show target m > hide #6 models > close session > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C6CB6185-2E52-4EF7-A88C-07CB74BB8345/MATNNQRGNLAHDQVRPARAPATGTYNL_aav2_trimer_INPUT_remodeled_0001.pdb Chain information for MATNNQRGNLAHDQVRPARAPATGTYNL_aav2_trimer_INPUT_remodeled_0001.pdb #1 --- Chain | Description A B C | No description available Computing secondary structure > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C2955B22-D837-4149-9F39-DCEB33142BB1/MATNLQRGNLAHDQVRPARQAATGTY__2.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C2955B22-D837-4149-9F39-DCEB33142BB1/MATNLQRGNLAHDQVRPARQAATGTY__2.pdb --- warnings | Ignored bad PDB record found on line 24619 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24620 #BEGIN_POSE_ENERGIES_TABLE Ignored bad PDB record found on line 24621 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24622 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24623 pose -9714.63 18438.7 6257.29 39.9513 392.778 -153.755 -1310.81 1594.74 -91.131 -326.189 -177.352 -39.4595 0 37.6985 7998.53 -114.108 0 288.754 1055.89 24176.9 3318 messages similar to the above omitted Chain information for MATNLQRGNLAHDQVRPARQAATGTY__2.pdb #2 --- Chain | Description A B C | No description available Computing secondary structure > hide #1 models > show #1 models > hide #2 models > hide #1 models > show #2 models > close #1 > sequence chain #2/A,B,C Alignment identifier is 1 > select /A:363-364/B:891-892/C:1419-1420 81 atoms, 78 bonds, 6 residues, 1 model selected > select /A:363-389/B:891-917/C:1419-1445 1218 atoms, 1224 bonds, 81 residues, 1 model selected > color sel red > color sel byhetero > show sel atoms > select clear > select /A:369/B:897/C:1425 72 atoms, 69 bonds, 3 residues, 1 model selected > select /A:369-372/B:897-900/C:1425-1428 192 atoms, 189 bonds, 12 residues, 1 model selected > select /A:369/B:897/C:1425 72 atoms, 69 bonds, 3 residues, 1 model selected > select /A:369-371/B:897-899/C:1425-1427 135 atoms, 132 bonds, 9 residues, 1 model selected > select /A:378/B:906/C:1434 72 atoms, 69 bonds, 3 residues, 1 model selected > select /A:378-379/B:906-907/C:1434-1435 114 atoms, 114 bonds, 6 residues, 1 model selected > select /A:381/B:909/C:1437 72 atoms, 69 bonds, 3 residues, 1 model selected > select /A:381/B:909/C:1437 72 atoms, 69 bonds, 3 residues, 1 model selected > select /A:369/B:897/C:1425 72 atoms, 69 bonds, 3 residues, 1 model selected > select /A:369/B:897/C:1425 72 atoms, 69 bonds, 3 residues, 1 model selected > select clear > close session > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/50E186F9-8AD0-4530-A21D-B35F1A286484/MATNLQRGNLAHDQVRPARQAATGTY__1.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/50E186F9-8AD0-4530-A21D-B35F1A286484/MATNLQRGNLAHDQVRPARQAATGTY__1.pdb --- warnings | Ignored bad PDB record found on line 24619 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24620 #BEGIN_POSE_ENERGIES_TABLE Ignored bad PDB record found on line 24621 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24622 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24623 pose -9693.27 16881.5 6247.75 40.142 388.052 -156.098 -1317.6 1804.74 -92.1992 -326.198 -177.402 -39.4595 0 36.2885 7991.58 -112.262 0 288.754 1066 22830.4 3318 messages similar to the above omitted Chain information for MATNLQRGNLAHDQVRPARQAATGTY__1.pdb #1 --- Chain | Description A B C | No description available Computing secondary structure > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C2955B22-D837-4149-9F39-DCEB33142BB1/MATNLQRGNLAHDQVRPARQAATGTY__2.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/C2955B22-D837-4149-9F39-DCEB33142BB1/MATNLQRGNLAHDQVRPARQAATGTY__2.pdb --- warnings | Ignored bad PDB record found on line 24619 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24620 #BEGIN_POSE_ENERGIES_TABLE Ignored bad PDB record found on line 24621 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24622 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24623 pose -9714.63 18438.7 6257.29 39.9513 392.778 -153.755 -1310.81 1594.74 -91.131 -326.189 -177.352 -39.4595 0 37.6985 7998.53 -114.108 0 288.754 1055.89 24176.9 3318 messages similar to the above omitted Chain information for MATNLQRGNLAHDQVRPARQAATGTY__2.pdb #2 --- Chain | Description A B C | No description available > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/EE385D4B-734F-444C-B081-CB1F8452C2B8/MATNLQRGNLAHDQVRPARQAATGTY__3.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/EE385D4B-734F-444C-B081-CB1F8452C2B8/MATNLQRGNLAHDQVRPARQAATGTY__3.pdb --- warnings | Ignored bad PDB record found on line 24619 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24620 #BEGIN_POSE_ENERGIES_TABLE Ignored bad PDB record found on line 24621 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24622 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24623 pose -9725.71 19315.1 6264.27 39.9358 388.643 -152.798 -1311.76 1722.8 -90.9974 -331.142 -178.078 -43.8268 0 35.9503 7975.25 -106.892 0 288.754 1088.41 25177.9 3318 messages similar to the above omitted Chain information for MATNLQRGNLAHDQVRPARQAATGTY__3.pdb #3 --- Chain | Description A B C | No description available > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/75A8C9BB-2766-4245-A6DB-704742CD1138/MATNLQRGNLAHDQVRPARQAATGTY__4.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/75A8C9BB-2766-4245-A6DB-704742CD1138/MATNLQRGNLAHDQVRPARQAATGTY__4.pdb --- warnings | Ignored bad PDB record found on line 24619 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24620 #BEGIN_POSE_ENERGIES_TABLE Ignored bad PDB record found on line 24621 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24622 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24623 pose -9699.69 31453.6 6269.89 39.917 388.672 -149.428 -1338.23 1782.68 -92.7522 -327.003 -175.599 -39.4595 0 38.5617 7976.37 -94.7846 0 288.754 1100.13 37421.7 3318 messages similar to the above omitted Chain information for MATNLQRGNLAHDQVRPARQAATGTY__4.pdb #4 --- Chain | Description A B C | No description available Computing secondary structure [Repeated 2 time(s)] > show atoms > hide #2-4 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show target m > close session > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/EAA52BEB-5FC2-4EAD-A81D-ED20B1DB8856/VSTNAQRGNNIKQGSTIDHRQAATADV__1.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/EAA52BEB-5FC2-4EAD-A81D-ED20B1DB8856/VSTNAQRGNNIKQGSTIDHRQAATADV__1.pdb --- warnings | Ignored bad PDB record found on line 24619 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24620 #BEGIN_POSE_ENERGIES_TABLE Ignored bad PDB record found on line 24621 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24622 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24623 pose -9693.8 11144.7 6293.77 39.912 392.89 -162.123 -1289.39 1594.07 -90.1243 -325.946 -178.331 -39.4595 0 43.497 8030.65 -124.509 0 280.716 1031.64 16948.1 3324 messages similar to the above omitted Chain information for VSTNAQRGNNIKQGSTIDHRQAATADV__1.pdb #1 --- Chain | Description A B C | No description available Computing secondary structure > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/3D8636F6-556C-4C18-8D62-E3B403CD5673/VSTNAQRGNNIKQGSTIDHRQAATADV__2.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/3D8636F6-556C-4C18-8D62-E3B403CD5673/VSTNAQRGNNIKQGSTIDHRQAATADV__2.pdb --- warnings | Ignored bad PDB record found on line 24619 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24620 #BEGIN_POSE_ENERGIES_TABLE Ignored bad PDB record found on line 24621 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24622 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24623 pose -9698.35 13205.2 6311.38 39.7967 386.547 -151.648 -1335.54 1594.07 -95.0504 -331.192 -178.358 -39.4595 0 37.0494 8017.47 -117.94 0 280.716 1038.95 18963.6 3324 messages similar to the above omitted Chain information for VSTNAQRGNNIKQGSTIDHRQAATADV__2.pdb #2 --- Chain | Description A B C | No description available > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/777851B4-B039-425B-BA21-2CD5DF79B2F0/VSTNAQRGNNIKQGSTIDHRQAATADV__3.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/777851B4-B039-425B-BA21-2CD5DF79B2F0/VSTNAQRGNNIKQGSTIDHRQAATADV__3.pdb --- warnings | Ignored bad PDB record found on line 24619 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24620 #BEGIN_POSE_ENERGIES_TABLE Ignored bad PDB record found on line 24621 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24622 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24623 pose -9732.19 13471.8 6359.03 39.8116 387.797 -152.224 -1312.97 1594.07 -99.424 -326.136 -177.097 -43.7252 0 36.2248 8015 -119.612 0 280.716 1033.76 19254.8 3324 messages similar to the above omitted Chain information for VSTNAQRGNNIKQGSTIDHRQAATADV__3.pdb #3 --- Chain | Description A B C | No description available > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/8544BDDB-4741-48CD-9FD7-DDEAAE75ED42/VSTNAQRGNNIKQGSTIDHRQAATADV__4.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/8544BDDB-4741-48CD-9FD7-DDEAAE75ED42/VSTNAQRGNNIKQGSTIDHRQAATADV__4.pdb --- warnings | Ignored bad PDB record found on line 24619 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24620 #BEGIN_POSE_ENERGIES_TABLE Ignored bad PDB record found on line 24621 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24622 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24623 pose -9734.2 15119.3 6322.08 39.7971 387.126 -163.616 -1310.06 1594.07 -93.4013 -326.116 -178.519 -39.4595 0 35.6371 8029.77 -118.947 0 280.716 1015.61 20859.7 3324 messages similar to the above omitted Chain information for VSTNAQRGNNIKQGSTIDHRQAATADV__4.pdb #4 --- Chain | Description A B C | No description available > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/A45FECC6-8820-4AA7-93C4-239ADFEAB996/VSTNAQRGNNIKQGSTIDHRQAATADV__5.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/A45FECC6-8820-4AA7-93C4-239ADFEAB996/VSTNAQRGNNIKQGSTIDHRQAATADV__5.pdb --- warnings | Ignored bad PDB record found on line 24619 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24620 #BEGIN_POSE_ENERGIES_TABLE Ignored bad PDB record found on line 24621 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24622 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24623 pose -9743.78 16324.2 6316.4 40.0556 388.379 -162.184 -1308.34 1594.07 -92.1249 -326.091 -175.499 -39.4595 0 37.6362 8012.52 -118.876 0 280.716 1037.06 22064.7 3324 messages similar to the above omitted Chain information for VSTNAQRGNNIKQGSTIDHRQAATADV__5.pdb #5 --- Chain | Description A B C | No description available Computing secondary structure [Repeated 3 time(s)] > show atoms > sequence chain #1/A,B,C#2/A,B,C#3/A,B,C#4/A,B,C#5/A,B,C Alignment identifier is 1 > select #1/A:363-364/B:892-893/C:1421-1422 #2/A:363-364/B:892-893/C:1421-1422 > #3/A:363-364/B:892-893/C:1421-1422 #4/A:363-364/B:892-893/C:1421-1422 > #5/A:363-364/B:892-893/C:1421-1422 405 atoms, 390 bonds, 30 residues, 5 models selected > select #1/A:363-389/B:892-918/C:1421-1447 #2/A:363-389/B:892-918/C:1421-1447 > #3/A:363-389/B:892-918/C:1421-1447 #4/A:363-389/B:892-918/C:1421-1447 > #5/A:363-389/B:892-918/C:1421-1447 5880 atoms, 5880 bonds, 405 residues, 5 models selected 1 [ID: 1] region 15 chains [363-389] RMSD: 4.539 > color sel red > color sel byhetero > select clear > hide #2-5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > show #4 target m > hide #3 target m > show #5 target m > hide #4 target m > show #1 target m > hide #5 target m > show #2 target m > hide #1 target m > show #3 target m > hide #2 target m > close session > open > /Users/tht13/Documents/JanusBind/binder_selections/complex_pdbs_for_BCHO/2_3_complex.pdb Chain information for 2_3_complex.pdb #1 --- Chain | Description A | No description available B | No description available Computing secondary structure > open > /Users/tht13/Documents/JanusBind/binder_selections/complex_pdbs_for_BCHO/4_0_complex.pdb Chain information for 4_0_complex.pdb #2 --- Chain | Description A | No description available B | No description available > open > /Users/tht13/Documents/JanusBind/binder_selections/complex_pdbs_for_BCHO/6_5_complex.pdb Chain information for 6_5_complex.pdb #3 --- Chain | Description A | No description available B | No description available > open > /Users/tht13/Documents/JanusBind/binder_selections/complex_pdbs_for_BCHO/9_1_complex.pdb Chain information for 9_1_complex.pdb #4 --- Chain | Description A | No description available B | No description available > open > /Users/tht13/Documents/JanusBind/binder_selections/complex_pdbs_for_BCHO/9_5_complex.pdb Chain information for 9_5_complex.pdb #5 --- Chain | Description A | No description available B | No description available > open > /Users/tht13/Documents/JanusBind/binder_selections/complex_pdbs_for_BCHO/12_0_complex.pdb Chain information for 12_0_complex.pdb #6 --- Chain | Description A | No description available B | No description available > open > /Users/tht13/Documents/JanusBind/binder_selections/complex_pdbs_for_BCHO/12_1_complex.pdb Chain information for 12_1_complex.pdb #7 --- Chain | Description A | No description available B | No description available > open > /Users/tht13/Documents/JanusBind/binder_selections/complex_pdbs_for_BCHO/16_6_complex.pdb Chain information for 16_6_complex.pdb #8 --- Chain | Description A | No description available B | No description available Computing secondary structure [Repeated 6 time(s)] > hide #!2-8 target m > show #!2 target m > hide #!1 target m > show #!3 target m > hide #!2 target m > show #!4 target m > hide #!3 target m > show #!5 target m > hide #!4 target m > show #!6 target m > hide #!5 target m > hide #!6 models > show #!4 models > hide #!4 models > show #!1 models > hide #!1 models > show #!5 models > hide #!5 models > show #!8 models > close #1-8 > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/3A813BEB-7174-469B-89CC-921E1B1A960D/MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0001.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/3A813BEB-7174-469B-89CC-921E1B1A960D/MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0001.pdb --- warnings | Ignored bad PDB record found on line 24193 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24194 #BEGIN_POSE_ENERGIES_TABLE MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0001.pdb Ignored bad PDB record found on line 24195 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24196 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24197 pose -9143.85 8527.97 5651.86 22.2739 349.71 -177.569 -1675.53 922.066 -97.6146 -320.122 -216.081 -134.302 0 35.9598 3205.77 -128.62 0.37912 276.746 1023.29 8122.33 1566 messages similar to the above omitted Chain information for MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0001.pdb #1 --- Chain | Description A B C | No description available Computing secondary structure > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/32A0AEAB-D9D0-420E-ADB3-63940AA6A382/MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0002.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/32A0AEAB-D9D0-420E-ADB3-63940AA6A382/MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0002.pdb --- warnings | Ignored bad PDB record found on line 24193 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24194 #BEGIN_POSE_ENERGIES_TABLE MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0002.pdb Ignored bad PDB record found on line 24195 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24196 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24197 pose -9117.02 7706.84 5625.73 22.649 350.852 -181.608 -1669.55 926.629 -97.6146 -320.122 -218.63 -131.748 0 35.9598 3194.46 -128.62 0.42918 276.746 1023.29 7298.67 1566 messages similar to the above omitted Chain information for MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0002.pdb #2 --- Chain | Description A B C | No description available > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/A849DE8E-AE00-47BE-B052-ABDE5A5A0163/MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0003.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/A849DE8E-AE00-47BE-B052-ABDE5A5A0163/MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0003.pdb --- warnings | Ignored bad PDB record found on line 24193 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24194 #BEGIN_POSE_ENERGIES_TABLE MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0003.pdb Ignored bad PDB record found on line 24195 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24196 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24197 pose -9137.38 9697.37 5647.54 21.9261 352.729 -167.127 -1706.02 927.23 -97.6146 -320.122 -229.344 -132.574 0 35.9598 3198.15 -128.62 0.31514 276.746 1023.29 9262.45 1566 messages similar to the above omitted Chain information for MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0003.pdb #3 --- Chain | Description A B C | No description available > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/B211297F-41DD-4412-9C14-FDCF9A89662C/MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0004.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/B211297F-41DD-4412-9C14-FDCF9A89662C/MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0004.pdb --- warnings | Ignored bad PDB record found on line 24193 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24194 #BEGIN_POSE_ENERGIES_TABLE MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0004.pdb Ignored bad PDB record found on line 24195 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24196 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24197 pose -9162.98 9893.42 5643 24.0068 349.293 -179.448 -1679.05 918.393 -97.6146 -320.122 -235.579 -130.647 0 35.9598 3201.33 -128.62 0.4421 276.746 1023.29 9431.82 1566 messages similar to the above omitted Chain information for MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0004.pdb #4 --- Chain | Description A B C | No description available > open > /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/B0417C23-B020-4B14-9DFE-3699A789905E/MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0005.pdb Summary of feedback from opening /Users/tht13/Library/Caches/com.binarynights.ForkLift/FileCache/B0417C23-B020-4B14-9DFE-3699A789905E/MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0005.pdb --- warnings | Ignored bad PDB record found on line 24193 # All scores below are weighted scores, not raw scores. Ignored bad PDB record found on line 24194 #BEGIN_POSE_ENERGIES_TABLE MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0005.pdb Ignored bad PDB record found on line 24195 label fa_atr fa_rep fa_sol fa_intra_rep fa_intra_sol_xover4 lk_ball_wtd fa_elec pro_close hbond_sr_bb hbond_lr_bb hbond_bb_sc hbond_sc dslf_fa13 omega fa_dun p_aa_pp yhh_planarity ref rama_prepro total Ignored bad PDB record found on line 24196 weights 1 0.55 1 0.005 1 1 1 1.25 1 1 1 1 1.25 0.4 0.7 0.6 0.625 1 0.45 NA Ignored bad PDB record found on line 24197 pose -9131.92 9785.71 5605.93 21.7837 353.384 -181.357 -1673.04 922.358 -97.6146 -320.122 -206.491 -137.073 0 35.9598 3210.14 -128.62 0.2484 276.746 1023.29 9359.32 1566 messages similar to the above omitted Chain information for MATNNQRGNRAPATGTYNL_aav2_trimer_INPUT_fixbb_0005.pdb #5 --- Chain | Description A B C | No description available Computing secondary structure [Repeated 3 time(s)] > sequence chain #1/A,B,C#2/A,B,C#3/A,B,C#4/A,B,C#5/A,B,C Alignment identifier is 1 > select #1/A-C:442-443 #2/A-C:442-443 #3/A-C:442-443 #4/A-C:442-443 > #5/A-C:442-443 405 atoms, 390 bonds, 30 residues, 5 models selected > select #1/A-C:442-460 #2/A-C:442-460 #3/A-C:442-460 #4/A-C:442-460 > #5/A-C:442-460 4170 atoms, 4185 bonds, 285 residues, 5 models selected 1 [ID: 1] region 15 chains [363-381] RMSD: 0.000 > select clear > close session > open 3ntt 3ntt title: Structural insights of Adeno-Associated virus 5. A gene therapy Vector for Cystic Fibrosis [more info...] Chain information for 3ntt #1 --- Chain | Description | UniProt A | Capsid protein | Q9YIJ1_9VIRU 1-724 Non-standard residues in 3ntt #1 --- GOL — glycerol (glycerin; propane-1,2,3-triol) NA — sodium ion 3ntt mmCIF Assemblies --- 1| complete icosahedral assembly 2| icosahedral asymmetric unit 3| icosahedral pentamer 4| icosahedral 23 hexamer 5| icosahedral asymmetric unit, std point frame 6| crystal asymmetric unit, crystal frame > close session > open 6nz0 6nz0 title: Cryo-EM structure of AAV-2 in complex with AAVR PKD domains 1 and 2 [more info...] Chain information for 6nz0 #1 --- Chain | Description | UniProt A | Capsid protein VP1 | CAPSD_AAV2S 1-735 Z | Dyslexia-associated protein KIAA0319-like protein | K319L_HUMAN 311-597 Non-standard residues in 6nz0 #1 --- MG — magnesium ion 6nz0 mmCIF Assemblies --- 1| complete icosahedral assembly 2| icosahedral asymmetric unit 3| icosahedral pentamer 4| icosahedral 23 hexamer 5| icosahedral asymmetric unit, std point frame > sym #1 assembly 1 Made 60 graphical clones for 6nz0 assembly 1 > view > sequence chain #1/Z Alignment identifier is 1/Z > color sel red > select /Z:405-499 1456 atoms, 1480 bonds, 190 residues, 2 models selected > color sel red > select clear > sequence chain #1/Z#2/Z Alignment identifier is 1 > sequence chain #1/A#2/A Alignment identifier is 2 > select #1/A:735 #2/A:735 16 atoms, 14 bonds, 2 residues, 2 models selected > select #1/A:726-735 #2/A:726-735 168 atoms, 168 bonds, 20 residues, 2 models selected Capsid Protein VP1 [ID: 2] region 2 chains [726-735] RMSD: 0.000 > color sel green > select clear > show #!2 surfaces > hide #!2 surfaces > close session [deleted to fit within ticket limits] OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/core/triggerset.py"", line 149, in invoke return self._func(self._name, data) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/atomic/structure.py"", line 2832, in res_hover _residue_mouse_hover(pick, session.logger) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/atomic/structure.py"", line 2825, in _residue_mouse_hover log.status(""chain %s: %s"" % (chain.chain_id, chain.description)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/core/logger.py"", line 522, in status StatusLogger.status(self, msg, **kw) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/core/logger.py"", line 220, in status if l.status(msg, color, secondary) and getattr( ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/gui.py"", line 1149, in status sbar.status(msg, color, secondary) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/core/triggerset.py"", line 149, in invoke return self._func(self._name, data) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/atomic/structure.py"", line 2832, in res_hover _residue_mouse_hover(pick, session.logger) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/atomic/structure.py"", line 2825, in _residue_mouse_hover log.status(""chain %s: %s"" % (chain.chain_id, chain.description)) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/core/logger.py"", line 522, in status StatusLogger.status(self, msg, **kw) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/core/logger.py"", line 220, in status if l.status(msg, color, secondary) and getattr( ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/gui.py"", line 1149, in status sbar.status(msg, color, secondary) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 104, in _expose_event self.status(self._last_message, self._last_color) File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/ui/statusbar.py"", line 170, in status r.draw_background() File ""/Applications/ChimeraX_Daily.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site- packages/chimerax/graphics/opengl.py"", line 1264, in draw_background GL.glClear(flags) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. Error processing trigger ""mouse hover"": OpenGL.error.GLError: GLError( err = 1286, description = b'invalid framebuffer operation', baseOperation = glClear, cArguments = (16640,) ) File ""src/errorchecker.pyx"", line 59, in OpenGL_accelerate.errorchecker._ErrorChecker.glCheckError See log for complete Python traceback. OpenGL version: 4.1 Metal - 90.5 OpenGL renderer: Apple M5 OpenGL vendor: Apple Python: 3.11.9 Locale: en_US.UTF-8 Qt version: PyQt6 6.10.2, Qt 6.10.0 Qt runtime version: 6.10.1 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: Mac17,2 Model Number: MDE64LL/A Chip: Apple M5 Total Number of Cores: 10 (4 performance and 6 efficiency) Memory: 24 GB System Firmware Version: 13822.61.10 OS Loader Version: 13822.61.10 Software: System Software Overview: System Version: macOS 26.2 (25C56) Kernel Version: Darwin 25.2.0 Time since boot: 22 days, 2 hours, 29 minutes Graphics/Displays: Apple M5: Chipset Model: Apple M5 Type: GPU Bus: Built-In Total Number of Cores: 10 Vendor: Apple (0x106b) Metal Support: Metal 4 Displays: DELL S2725QC: Resolution: 5120 x 2880 (5K/UHD+ - Ultra High Definition Plus) UI Looks like: 2560 x 1440 @ 120.00Hz Main Display: Yes Mirror: Off Online: Yes Rotation: Supported Color LCD: Display Type: Built-in Liquid Retina XDR Display Resolution: 3024 x 1964 Retina Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: accessible-pygments: 0.0.5 aiohappyeyeballs: 2.6.1 aiohttp: 3.13.1 aiosignal: 1.4.0 alabaster: 1.0.0 annotated-types: 0.7.0 anyio: 4.13.0 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.1 attrs: 26.1.0 babel: 2.18.0 beautifulsoup4: 4.13.5 blockdiag: 3.0.0 blosc2: 4.1.2 bs4: 0.0.2 build: 1.3.0 certifi: 2025.7.14 cftime: 1.6.5 charset-normalizer: 3.4.7 ChimeraX-AddCharge: 1.5.20 ChimeraX-AddH: 2.2.8 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.2 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 3.2 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Animations: 1.0 ChimeraX-Aniso: 1.3.2 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.67.1 ChimeraX-AtomicLibrary: 14.4 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.1 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.6.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4.1 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.4 ChimeraX-Cluster: 1.0 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3.1 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.12.dev202604290127 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.2.1 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.3 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.4 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.8.2 ChimeraX-Label: 1.4 ChimeraX-LightingGUI: 1.0 ChimeraX-ListInfo: 1.3.1 ChimeraX-Log: 1.2.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.2 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchAlign: 1.1 ChimeraX-MatchMaker: 2.4 ChimeraX-MCopy: 1.0 ChimeraX-MCPServer: 0.2.0 ChimeraX-MDcrds: 2.19 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-Minimize: 1.3.8 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.23 ChimeraX-ModelPanel: 1.6.1 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0.1 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.15.4 ChimeraX-OpenFold: 1.0 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.13 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.5 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.4 ChimeraX-ProfileGrids: 1.6 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.8.2 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.3 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.2 ChimeraX-Scenes: 0.3.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.12 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.18 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SNFG: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.3 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.3 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.4 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.50.5 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDock: 1.6.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 click: 8.3.3 colorama: 0.4.6 comm: 0.2.3 contourpy: 1.3.3 coverage: 7.13.5 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.2.4 debugpy: 1.8.20 decorator: 5.2.1 docutils: 0.21.2 executing: 2.2.1 filelock: 3.19.1 fonttools: 4.62.1 frozenlist: 1.8.0 funcparserlib: 2.0.0a0 glfw: 2.10.0 grako: 3.16.5 h11: 0.16.0 h5py: 3.16.0 html2text: 2025.4.15 httpcore: 1.0.9 httpx: 0.28.1 httpx-sse: 0.4.3 idna: 3.13 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 2.0.0 iniconfig: 2.3.0 ipykernel: 7.1.0 ipython: 9.9.0 ipython_pygments_lexers: 1.1.1 jedi: 0.19.2 Jinja2: 3.1.6 jsonschema: 4.26.0 jsonschema-specifications: 2025.9.1 jupyter_client: 8.8.0 jupyter_core: 5.9.1 kiwisolver: 1.5.0 line_profiler: 5.0.0 lxml: 6.0.2 lz4: 4.3.2 Markdown: 3.8.2 MarkupSafe: 3.0.3 matplotlib: 3.10.7 matplotlib-inline: 0.2.1 mcp: 1.18.0 msgpack: 1.1.1 multidict: 6.7.1 narwhals: 2.20.0 ndindex: 1.10.1 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.14.1 numpy: 1.26.4 OpenMM: 8.4.0 openvr: 1.26.701 packaging: 25.0 ParmEd: 4.2.2 parso: 0.8.6 pep517: 0.13.1 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 11.3.0 pip: 25.2 pkginfo: 1.12.1.2 platformdirs: 4.9.6 plotly: 6.7.0 pluggy: 1.6.0 prompt_toolkit: 3.0.52 propcache: 0.4.1 psutil: 7.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pybind11: 3.0.1 pycollada: 0.8 pydantic: 2.13.3 pydantic-settings: 2.14.0 pydantic_core: 2.46.3 pydata-sphinx-theme: 0.17.1 pydicom: 2.4.4 Pygments: 2.18.0 pynmrstar: 3.5.1 pynrrd: 1.0.0 PyOpenGL: 3.1.10 PyOpenGL-accelerate: 3.1.10 pyopenxr: 1.1.4501 pyparsing: 3.3.2 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.10.2 PyQt6-Qt6: 6.10.1 PyQt6-WebEngine-commercial: 6.10.0 PyQt6-WebEngine-Qt6: 6.10.1 PyQt6_sip: 13.10.3 pytest: 9.0.3 pytest-cov: 7.1.0 python-dateutil: 2.9.0.post0 python-dotenv: 1.2.2 python-multipart: 0.0.27 pyzmq: 27.1.0 qtconsole: 5.7.0 QtPy: 2.4.3 qtshim: 1.2.2 RandomWords: 0.4.0 referencing: 0.37.0 requests: 2.32.5 roman-numerals: 4.1.0 rpds-py: 0.30.0 scipy: 1.14.0 setuptools: 80.9.0 sfftk-rw: 0.8.1 six: 1.17.0 snowballstemmer: 3.0.1 sortedcontainers: 2.4.0 soupsieve: 2.8.3 Sphinx: 9.0.4 sphinx-autodoc-typehints: 3.6.1 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 sse-starlette: 3.4.1 stack-data: 0.6.3 starlette: 1.0.0 superqt: 0.7.6 tables: 3.10.2 tcia_utils: 3.2.1 tifffile: 2025.3.13 tinyarray: 1.2.5 tornado: 6.5.5 tqdm: 4.67.3 traitlets: 5.14.3 typing-inspection: 0.4.2 typing_extensions: 4.15.0 Unidecode: 1.4.0 urllib3: 2.6.3 uvicorn: 0.46.0 wcwidth: 0.6.0 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 yarl: 1.23.0 }}} " defect assigned normal Graphics all ChimeraX