id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 2008 unknown residues numbered like gaps olibclarke@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: Darwin-18.6.0-x86_64-i386-64bit ChimeraX Version: 0.9 (2019-06-05) Description Hi, Regarding the sequence viewer - would it be possible to represent missing (unmodelled) residues as dashes (""-"") in the sequence viewer, when viewing the sequence of a single protein model? This would be useful for quickly seeing how much of the native sequence is not modeled, quickly identifying missing loops, and as a bonus the ""alignment numbering"" used in the sequence viewer would then match the real numbering of the coordinates file. Cheers Oli Log: UCSF ChimeraX version: 0.9 (2019-06-05) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open 1bl8 format mmCIF fromDatabase pdb 1bl8 title: Potassium channel (KCSA) from streptomyces lividans [more info...] Chain information for 1bl8 #1 --- Chain | Description A B C D | protein (potassium channel protein) Alignment identifier is 1 > close #1 > open 5tal format mmCIF fromDatabase pdb 5tal title: Structure of rabbit RyR1 (Caffeine/ATP/Ca2+ dataset, class 1&2) [more info...] Chain information for 5tal #1 --- Chain | Description A F H J | Peptidyl-prolyl cis-trans isomerase FKBP1B B E G I | Ryanodine receptor 1 Non-standard residues in 5tal #1 --- ATP — adenosine-5'-triphosphate CA — calcium ion CFF — caffeine (3,7-dihydro-1,3,7-trimethyl-1H-purine-2,6-dione) ZN — zinc ion Alignment identifier is 1 Alignment identifier is 2 Alignment identifier is 3 Alignment identifier is 4 OpenGL version: 4.1 ATI-2.9.26 OpenGL renderer: AMD Radeon Pro 580 OpenGL Engine OpenGL vendor: ATI Technologies Inc. }}} " defect accepted normal Sequence Elaine Meng all ChimeraX