id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 20075 Crash in swap_buffers when status line exposed Mac Qt 6.9.2 chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-26.3.1-arm64-arm-64bit ChimeraX Version: 1.11.1 (2026-01-23 05:51:34 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Bus error Current thread 0x0000000203de3100 (most recent call first): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 248 in swap_buffers File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 561 in swap_buffers File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/statusbar.py"", line 166 in status File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/statusbar.py"", line 98 in _expose_event File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 122 in make_current File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 555 in make_current File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 584 in use_shared_context File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/sideview/tool.py"", line 146 in render File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/sideview/tool.py"", line 115 in _redraw File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py"", line 149 in invoke File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py"", line 248 in _activate File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py"", line 217 in activate File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py"", line 393 in activate_trigger File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py"", line 100 in draw_new_frame File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py"", line 169 in update_graphics_now File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/graphics.py"", line 153 in resizeEvent File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/graphics.py"", line 61 in event File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 414 in event_loop File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1064 in init File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1229 in File """", line 88 in _run_code File """", line 198 in _run_module_as_main Extension modules: chimerax.arrays._arrays, 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(unallocated) __AUTH 5968K 657 __AUTH_CONST 90.5M 1043 __CTF 824 1 __DATA 42.9M 1141 __DATA_CONST 59.7M 1187 __DATA_DIRTY 8499K 900 __FONT_DATA 2352 1 __GLSLBUILTINS 5176K 1 __INFO_FILTER 8 1 __LINKEDIT 619.8M 140 __OBJC_RO 78.4M 1 __OBJC_RW 2571K 1 __TEXT 1.5G 1154 __TEXT (graphics) 47.0M 56 __TPRO_CONST 128K 2 dyld private memory 944K 10 mapped file 321.8M 69 page table in kernel 1586K 1 shared memory 3840K 28 =========== ======= ======= TOTAL 4.5G 7146 TOTAL, minus reserved VM space 4.3G 7146 "", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""logWritingSignature"" : ""7c6d0237a244b78aebd7b5c9afd138b68be9d3f6"", ""bug_type"" : ""309"", ""roots_installed"" : 0, ""trmStatus"" : 1, ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""61675b89201f677a9a4cbd65"", ""factorPackIds"" : [ ""65a855f5f087695cfac03d1f"" ], ""deploymentId"" : 240000267 }, { ""rolloutId"" : ""645eb1d0417dab722a215927"", ""factorPackIds"" : [ ], ""deploymentId"" : 240000005 } ], ""experiments"" : [ ] } } ===== Log before crash start ===== UCSF ChimeraX version: 1.11.1 (2026-01-23) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/SSVirdee/Library/CloudStorage/OneDrive- > UniversityofDundee/Mehmet Gundogdu (Staff)'s files - > MYCBP2_NMNAT2_manuscript/figures/raw_data/chimera_sessions/7_MYCBP2_FBXO45_SKP1_overall/7_chimera_figure_5.cxs"" > format session > view name session-start opened ChimeraX session > hide #!2-7 surfaces > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > save ""/Users/SSVirdee/OneDrive - University of Dundee/35575 home > backup/Documents/Projects/MYCBP2/SKP1-MYCBP2-FBXO45 Manuscript/Isolated > domains/FBD.pdb"" models #2 > combine #2a Expected a keyword > combine #2 > hide #!8 models > hide #!7 models > hide #!6 models > hide #!5 models > hide #!4 models > hide #!3 models > hide #!2 models > show #!9 surfaces > coulombic #!9 Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for copy of copy of ESRF20240426_p1s9_grenadesfp_aimless_refmac7_fixed2.pdb_A SES surface #9.2: minimum, -11.07, mean 0.41, maximum 12.64 To also show corresponding color key, enter the above coulombic command and add key true > open 9r94 Summary of feedback from opening 9r94 fetched from pdb --- note | Fetching compressed mmCIF 9r94 from http://files.rcsb.org/download/9r94.cif 9r94 title: Cryo-EM structure of the E3 ligase HECTD3 [more info...] Chain information for 9r94 #10 --- Chain | Description | UniProt A | E3 ubiquitin-protein ligase HECTD3 | HECD3_HUMAN 1-861 > hide #!9 models > show #!9 models > hide #!10 models > show #!10 models > mmaker #10/a to #9/a pair bs alg sw matrix PAM-150 ss false cut 5.0 Parameters --- Chain pairing | bs Alignment algorithm | Smith-Waterman Similarity matrix | PAM-150 No secondary-structure guidance used Gap open | 12 Gap extend | 1 Iteration cutoff | 5 Matchmaker copy of copy of ESRF20240426_p1s9_grenadesfp_aimless_refmac7_fixed2.pdb (#9) with 9r94 (#10), sequence alignment score = 43 RMSD between 41 pruned atom pairs is 2.148 angstroms; (across all 43 pairs: 2.803) > hide #!9 models > ui tool show ""Side View"" > show #!9 models > hide #!9 models > show #!10 surfaces > coulombic #!10 Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for 9r94_A SES surface #10.2: minimum, -24.22, mean -2.46, maximum 15.02 To also show corresponding color key, enter the above coulombic command and add key true > hide #!10 surfaces > show #!9 models > hide #!9-10 surfaces > hide #!10 models > select #9/A:2482 11 atoms, 10 bonds, 1 residue, 1 model selected > style sel ball Changed 11 atom styles > show sel atoms > hide #!9 models > show #!1 models > hide #!1 models > show #!2 models > hide #!2 models > show #!3 models > show #!4 models > show #!5 models > hide #!5 models > hide #!4 models > hide #!3 models > show #!9 models > show #!10 models > hide #!10 models > show #!10 models > hide #!9 models > hide #!10 models > show #!2 models > show #!1 models > show #!3 models > show #!4 models > show #!5 models > save ""/Users/SSVirdee/OneDrive - University of Dundee/Mehmet Gundogdu > (Staff)'s files - > MYCBP2_NMNAT2_manuscript/figures/raw_data/chimera_sessions/7_MYCBP2_FBXO45_SKP1_overall/7_chimera_figure_5_SV.cxs"" > close session > open ""/Users/SSVirdee/Library/CloudStorage/OneDrive- > UniversityofDundee/Mehmet Gundogdu (Staff)'s files - > MYCBP2_NMNAT2_manuscript/figures/raw_data/chimera_sessions/6_MYCBP2_FBXO45_SKP1_ASU/6_chimera_figure_1_ASU.cxs"" Opened ESRF20240426_p1s9_grenadesfp_aimless_refmac7.ccp4 as #2, grid size 249,267,231, pixel 0.877,0.82,0.887, shown at level 0.12, step 1, values float32 Opened ESRF20240426_p1s9_grenadesfp_aimless_refmac7.ccp4 zone as #3, grid size 249,267,231, pixel 0.877,0.82,0.887, shown at level 0.12, step 1, values float32 Opened ESRF20240426_p1s9_grenadesfp_aimless_refmac7.ccp4 zone as #4, grid size 249,267,231, pixel 0.877,0.82,0.887, shown at level 0.12, step 1, values float32 Opened ESRF20240426_p1s9_grenadesfp_aimless_refmac7.ccp4 zone as #5, grid size 249,267,231, pixel 0.877,0.82,0.887, shown at level 0.12, step 1, values float32 Opened ESRF20240426_p1s9_grenadesfp_aimless_refmac7.ccp4 zone as #6, grid size 249,267,231, pixel 0.877,0.82,0.887, shown at level 0.12, step 1, values float32 Opened ESRF20240426_p1s9_grenadesfp_aimless_refmac7.ccp4 zone as #7, grid size 249,267,231, pixel 0.877,0.82,0.887, shown at level 0.12, step 1, values float32 Opened ESRF20240426_p1s9_grenadesfp_aimless_refmac7.ccp4 zone as #8, grid size 249,267,231, pixel 0.877,0.82,0.887, shown at level 0.12, step 1, values float32 > view name session-start opened ChimeraX session > close session > open ""/Users/SSVirdee/Library/CloudStorage/OneDrive- > UniversityofDundee/Mehmet Gundogdu (Staff)'s files - > MYCBP2_NMNAT2_manuscript/figures/raw_data/chimera_sessions/6_MYCBP2_FBXO45_SKP1_ASU/6_chimera_figure_2_ASU.cxs"" Opened ESRF20240426_p1s9_grenadesfp_aimless_refmac7.ccp4 as #2, grid size 249,267,231, pixel 0.877,0.82,0.887, shown at level 0.12, step 1, values float32 Opened ESRF20240426_p1s9_grenadesfp_aimless_refmac7.ccp4 zone as #12, grid size 249,267,231, pixel 0.877,0.82,0.887, shown at level 0.12, step 1, values float32 Opened ESRF20240426_p1s9_grenadesfp_aimless_refmac7.ccp4 zone as #13, grid size 249,267,231, pixel 0.877,0.82,0.887, shown at level 0.12, step 1, values float32 Opened ESRF20240426_p1s9_grenadesfp_aimless_refmac7.ccp4 zone as #14, grid size 249,267,231, pixel 0.877,0.82,0.887, shown at level 0.12, step 1, values float32 Opened ESRF20240426_p1s9_grenadesfp_aimless_refmac7.ccp4 zone as #15, grid size 249,267,231, pixel 0.877,0.82,0.887, shown at level 0.12, step 1, values float32 Opened ESRF20240426_p1s9_grenadesfp_aimless_refmac7.ccp4 zone as #16, grid size 249,267,231, pixel 0.877,0.82,0.887, shown at level 0.12, step 1, values float32 Opened ESRF20240426_p1s9_grenadesfp_aimless_refmac7.ccp4 zone as #17, grid size 249,267,231, pixel 0.877,0.82,0.887, shown at level 0.12, step 1, values float32 Opened ESRF20240426_p1s9_grenadesfp_aimless_refmac7.ccp4 zone as #18, grid size 249,267,231, pixel 0.877,0.82,0.887, shown at level 0.12, step 1, values float32 Opened ESRF20240426_p1s9_grenadesfp_aimless_refmac7.ccp4 zone as #19, grid size 249,267,231, pixel 0.877,0.82,0.887, shown at level 0.12, step 1, values float32 Opened ESRF20240426_p1s9_grenadesfp_aimless_refmac7.ccp4 zone as #20, grid size 249,267,231, pixel 0.877,0.82,0.887, shown at level 0.12, step 1, values float32 > view name session-start opened ChimeraX session > close session > open ""/Users/SSVirdee/Library/CloudStorage/OneDrive- > UniversityofDundee/Mehmet Gundogdu (Staff)'s files - > MYCBP2_NMNAT2_manuscript/figures/raw_data/chimera_sessions/7_MYCBP2_FBXO45_SKP1_overall/7_chimera_figure_3.cxs"" > view name session-start opened ChimeraX session > cartoon tether scale 0 > hide #1.1 models > tuen y 180 Unknown command: tuen y 180 > turn y 180 > cartoon tether scale 0 > turn y 180 > save ""/Users/SSVirdee/OneDrive - University of Dundee/35575 home > backup/Documents/Projects/MYCBP2/SKP1-MYCBP2-FBXO45 Manuscript/Full > scale_single-0_degrees.png"" width 1922 height 1205 supersample 3 > turn y 180 > save ""/Users/SSVirdee/OneDrive - University of Dundee/35575 home > backup/Documents/Projects/MYCBP2/SKP1-MYCBP2-FBXO45 Manuscript/Full > scale_single-180_degrees.png"" width 1922 height 1205 supersample 3 > turn y 180 > save ""/Users/SSVirdee/OneDrive - University of Dundee/35575 home > backup/Documents/Projects/MYCBP2/SKP1-MYCBP2-FBXO45 Manuscript/Full > scale_single-0_degrees.png"" width 3000 height 1881 supersample 3 > turn y 180 > save ""/Users/SSVirdee/OneDrive - University of Dundee/35575 home > backup/Documents/Projects/MYCBP2/SKP1-MYCBP2-FBXO45 Manuscript/Full > scale_single-180_degrees.png"" width 3000 height 1881 supersample 3 > close session > open ""/Users/SSVirdee/Library/CloudStorage/OneDrive- > UniversityofDundee/Mehmet Gundogdu (Staff)'s files - > MYCBP2_NMNAT2_manuscript/figures/raw_data/chimera_sessions/7_MYCBP2_FBXO45_SKP1_overall/7_chimera_figure_3.cxs"" > format session > view name session-start opened ChimeraX session > turn y 180 ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.11.1 (2026-01-23) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 90.5 OpenGL renderer: Apple M2 Max OpenGL vendor: Apple Python: 3.11.9 Locale: en_US.UTF-8 Qt version: PyQt6 6.9.1, Qt 6.9.0 Qt runtime version: 6.9.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: Mac14,5 Model Number: MPHG3B/A Chip: Apple M2 Max Total Number of Cores: 12 (8 Performance and 4 Efficiency) Memory: 32 GB System Firmware Version: 13822.81.10 OS Loader Version: 13822.81.10 Software: System Software Overview: System Version: macOS 26.3.1 (a) (25D771280a) Kernel Version: Darwin 25.3.0 Time since boot: 4 days, 15 hours, 3 minutes Graphics/Displays: Apple M2 Max: Chipset Model: Apple M2 Max Type: GPU Bus: Built-In Total Number of Cores: 30 Vendor: Apple (0x106b) Metal Support: Metal 4 Displays: Color LCD: Display Type: Built-in Liquid Retina XDR Display Resolution: 3024 x 1964 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: aiohappyeyeballs: 2.6.1 aiohttp: 3.13.1 aiosignal: 1.4.0 alabaster: 1.0.0 annotated-types: 0.7.0 anyio: 4.12.1 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.1 attrs: 25.4.0 babel: 2.17.0 beautifulsoup4: 4.13.5 blockdiag: 3.0.0 blosc2: 3.12.2 build: 1.3.0 certifi: 2025.7.14 cftime: 1.6.5 charset-normalizer: 3.4.4 ChimeraX-AddCharge: 1.5.20 ChimeraX-AddH: 2.2.8 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 3.1.1 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Animations: 1.0 ChimeraX-Aniso: 1.3.2 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.61.4 ChimeraX-AtomicLibrary: 14.2.1 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.1 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.6.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3.0 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.11.1 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.4 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.3 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.4 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.7.3 ChimeraX-Label: 1.2 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.2 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.2.2 ChimeraX-MCopy: 1.0 ChimeraX-MCPServer: 0.1.0 ChimeraX-MDcrds: 2.17.2 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-Minimize: 1.3.2 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.22 ChimeraX-ModelPanel: 1.6 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0.1 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.15.2 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.12 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.5 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.4 ChimeraX-ProfileGrids: 1.4.2 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.5 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.3 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.2 ChimeraX-Scenes: 0.3.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.10 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.17.3 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.49.1 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDock: 1.5.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 click: 8.3.1 colorama: 0.4.6 comm: 0.2.3 contourpy: 1.3.3 coverage: 7.13.1 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.1.4 debugpy: 1.8.19 decorator: 5.2.1 docutils: 0.21.2 executing: 2.2.1 filelock: 3.19.1 fonttools: 4.61.1 frozenlist: 1.8.0 funcparserlib: 2.0.0a0 glfw: 2.10.0 grako: 3.16.5 h11: 0.16.0 h5py: 3.15.1 html2text: 2025.4.15 httpcore: 1.0.9 httpx: 0.28.1 httpx-sse: 0.4.3 idna: 3.11 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 1.4.1 iniconfig: 2.3.0 ipykernel: 6.30.1 ipython: 9.5.0 ipython_pygments_lexers: 1.1.1 ipywidgets: 8.1.8 jedi: 0.19.2 Jinja2: 3.1.6 jsonschema: 4.26.0 jsonschema-specifications: 2025.9.1 jupyter_client: 8.6.3 jupyter_core: 5.9.1 jupyterlab_widgets: 3.0.16 kiwisolver: 1.4.9 line_profiler: 5.0.0 lxml: 6.0.2 lz4: 4.3.2 Markdown: 3.8.2 MarkupSafe: 3.0.3 matplotlib: 3.10.7 matplotlib-inline: 0.2.1 mcp: 1.18.0 msgpack: 1.1.1 multidict: 6.7.0 ndindex: 1.10.1 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.14.1 numpy: 1.26.4 OpenMM: 8.2.0 openvr: 1.26.701 packaging: 25.0 ParmEd: 4.2.2 parso: 0.8.5 pep517: 0.13.1 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 11.3.0 pip: 25.2 pkginfo: 1.12.1.2 platformdirs: 4.5.1 pluggy: 1.6.0 prompt_toolkit: 3.0.52 propcache: 0.4.1 psutil: 7.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pybind11: 3.0.1 pycollada: 0.8 pydantic: 2.12.5 pydantic-settings: 2.12.0 pydantic_core: 2.41.5 pydicom: 2.4.4 Pygments: 2.18.0 pynmrstar: 3.3.6 pynrrd: 1.0.0 PyOpenGL: 3.1.10 PyOpenGL-accelerate: 3.1.10 pyopenxr: 1.1.4501 pyparsing: 3.3.2 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.9.1 PyQt6-Qt6: 6.9.2 PyQt6-WebEngine-commercial: 6.9.0 PyQt6-WebEngine-Qt6: 6.9.2 PyQt6_sip: 13.10.2 pytest: 9.0.2 pytest-cov: 7.0.0 python-dateutil: 2.9.0.post0 python-dotenv: 1.2.1 python-multipart: 0.0.21 pyzmq: 27.1.0 qtconsole: 5.7.0 QtPy: 2.4.3 qtshim: 1.2 RandomWords: 0.4.0 referencing: 0.37.0 requests: 2.32.5 roman-numerals: 4.1.0 roman-numerals-py: 4.1.0 rpds-py: 0.30.0 scipy: 1.14.0 setuptools: 80.9.0 sfftk-rw: 0.8.1 six: 1.17.0 snowballstemmer: 3.0.1 sortedcontainers: 2.4.0 soupsieve: 2.8.3 Sphinx: 8.2.3 sphinx-autodoc-typehints: 3.2.0 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 sse-starlette: 3.2.0 stack-data: 0.6.3 starlette: 0.52.1 superqt: 0.7.6 tables: 3.10.2 tcia_utils: 1.5.1 tifffile: 2025.3.13 tinyarray: 1.2.5 tornado: 6.5.4 traitlets: 5.14.3 typing-inspection: 0.4.2 typing_extensions: 4.15.0 urllib3: 2.6.3 uvicorn: 0.40.0 wcwidth: 0.3.2 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 widgetsnbextension: 4.0.15 yarl: 1.22.0 }}} " defect closed normal Graphics duplicate all ChimeraX