id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 20072 Crash in event loop chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-15.7.4-arm64-arm-64bit ChimeraX Version: 1.11.1 (2026-01-23 05:51:34 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Bus error Thread 0x00000003378c3000 (most recent call first): File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 579 in _handle_results File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x00000003368b7000 (most recent call first): File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 531 in _handle_tasks File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x00000003358ab000 (most recent call first): File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/selectors.py"", line 415 in select File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/connection.py"", line 948 in wait File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 502 in _wait_for_updates File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 522 in _handle_workers File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x000000033489f000 (most recent call first): File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x0000000333893000 (most recent call first): File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x0000000332887000 (most recent call first): File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x000000033187b000 (most recent call first): File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x000000033086f000 (most recent call first): File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x000000032f863000 (most recent call first): File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x000000032e857000 (most recent call first): File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x000000032d84b000 (most recent call first): File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x000000032c83f000 (most recent call first): File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Thread 0x000000032b833000 (most recent call first): File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 982 in run File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1045 in _bootstrap_inner File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1002 in _bootstrap Current thread 0x0000000205a2e240 (most recent call first): File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 414 in event_loop File ""/private/var/folders/8y/9q65ydv97sz3xjjt7_g_0qnr0000gp/T/AppTranslocation/0F067296-5C2E-459F-AECD-355EDBBB4C8A/d/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1064 in init File 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All rights reserved. How to cite UCSF ChimeraX > open ""/Users/sarah.stadlmayr/Library/CloudStorage/OneDrive- > KarolinskaInstitutet/Desktop/PostDoc/Erwin Schrödinger/Functionalized > Silk/Material Characterization/AlphaFold Prediction/His-TEV- > YIGSR-A3IA/fold_2026_03_12_15_28_model_0.cif"" Chain information for fold_2026_03_12_15_28_model_0.cif #1 --- Chain | Description A | . Computing secondary structure > open ""/Users/sarah.stadlmayr/Library/CloudStorage/OneDrive- > KarolinskaInstitutet/Desktop/PostDoc/Erwin Schrödinger/Functionalized > Silk/Material Characterization/AlphaFold > Prediction/YIGSR-A3IA/fold_2026_03_12_15_27_model_0.cif"" Chain information for fold_2026_03_12_15_27_model_0.cif #2 --- Chain | Description A | . Computing secondary structure > select add #1 2523 atoms, 2560 bonds, 370 residues, 1 model selected > select subtract #1 Nothing selected > select add #1 2523 atoms, 2560 bonds, 370 residues, 1 model selected > select add #2 4892 atoms, 4957 bonds, 722 residues, 2 models selected > matchmaker #1 to #2 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker fold_2026_03_12_15_27_model_0.cif, chain A (#2) with fold_2026_03_12_15_28_model_0.cif, chain A (#1), sequence alignment score = 1690.7 RMSD between 79 pruned atom pairs is 0.675 angstroms; (across all 352 pairs: 27.585) > select subtract #1 2369 atoms, 2397 bonds, 352 residues, 1 model selected > select subtract #2 Nothing selected > hide #1 models > hide #2 models > show #2 models > show #1 models ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.11.1 (2026-01-23) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 89.4 OpenGL renderer: Apple M4 OpenGL vendor: Apple Python: 3.11.9 Locale: en_US.UTF-8 Qt version: PyQt6 6.9.1, Qt 6.9.0 Qt runtime version: 6.9.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: Mac16,1 Model Number: MW2V3KS/A Chip: Apple M4 Total Number of Cores: 10 (4 performance and 6 efficiency) Memory: 16 GB System Firmware Version: 13822.81.10 OS Loader Version: 11881.140.96 Software: System Software Overview: System Version: macOS 15.7.4 (24G517) Kernel Version: Darwin 24.6.0 Time since boot: 22 days, 1 hour, 31 minutes Graphics/Displays: Apple M4: Chipset Model: Apple M4 Type: GPU Bus: Built-In Total Number of Cores: 10 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-in Liquid Retina XDR Display Resolution: 3024 x 1964 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal PHL 288P6L: Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition) UI Looks like: 1920 x 1080 @ 30.00Hz Mirror: Off Online: Yes Rotation: Supported Installed Packages: aiohappyeyeballs: 2.6.1 aiohttp: 3.13.1 aiosignal: 1.4.0 alabaster: 1.0.0 annotated-types: 0.7.0 anyio: 4.12.1 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.1 attrs: 25.4.0 babel: 2.17.0 beautifulsoup4: 4.13.5 blockdiag: 3.0.0 blosc2: 3.12.2 build: 1.3.0 certifi: 2025.7.14 cftime: 1.6.5 charset-normalizer: 3.4.4 ChimeraX-AddCharge: 1.5.20 ChimeraX-AddH: 2.2.8 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 3.1.1 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Animations: 1.0 ChimeraX-Aniso: 1.3.2 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.61.4 ChimeraX-AtomicLibrary: 14.2.1 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.1 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.6.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3.0 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.11.1 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.4 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.3 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.4 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.7.3 ChimeraX-Label: 1.2 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.2 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.2.2 ChimeraX-MCopy: 1.0 ChimeraX-MCPServer: 0.1.0 ChimeraX-MDcrds: 2.17.2 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-Minimize: 1.3.2 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.22 ChimeraX-ModelPanel: 1.6 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0.1 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.15.2 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.12 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.5 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.4 ChimeraX-ProfileGrids: 1.4.2 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.5 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.3 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.2 ChimeraX-Scenes: 0.3.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.10 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.17.3 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.1 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sphinx-autodoc-typehints: 3.2.0 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 sse-starlette: 3.2.0 stack-data: 0.6.3 starlette: 0.52.1 superqt: 0.7.6 tables: 3.10.2 tcia_utils: 1.5.1 tifffile: 2025.3.13 tinyarray: 1.2.5 tornado: 6.5.4 traitlets: 5.14.3 typing-inspection: 0.4.2 typing_extensions: 4.15.0 urllib3: 2.6.3 uvicorn: 0.40.0 wcwidth: 0.3.2 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 widgetsnbextension: 4.0.15 yarl: 1.22.0 }}} " defect closed normal Core can't reproduce Tom Goddard all ChimeraX