id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 20059 Crash in swap_buffers exposing status line during Mac wakeup, macOS 26 chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-26.3.1-arm64-arm-64bit ChimeraX Version: 1.11.1 (2026-01-23 05:51:34 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Bus error Current thread 0x00000001f34a7100 (most recent call first): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 248 in swap_buffers File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 561 in swap_buffers File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/statusbar.py"", line 166 in status File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/statusbar.py"", line 98 in _expose_event File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 414 in event_loop File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1064 in init File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1229 in File """", line 88 in _run_code File """", line 198 in _run_module_as_main Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, 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ChimeraX version: 1.11.1 (2026-01-23) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/todbutenschon/Desktop/Rieder Lab/AlphaFold/PRR and > WW/fold_2026_03_24_12_05_prr_ww_model_0.cif"" format mmcif Chain information for fold_2026_03_24_12_05_prr_ww_model_0.cif #1 --- Chain | Description A | . B | . Computing secondary structure > close > open ""/Users/todbutenschon/Desktop/Rieder Lab/AlphaFold/PRR and > WW/fold_2026_03_24_12_05_prr_ww_model_0.cif"" format mmcif Chain information for fold_2026_03_24_12_05_prr_ww_model_0.cif #1 --- Chain | Description A | . B | . Computing secondary structure > open ""/Users/todbutenschon/Desktop/Rieder Lab/AlphaFold/Mxc to > Prp40/fold_2026_03_24_11_30_mxc_prp40_summary_confidences_0.json"" Opening an AlphaFold PAE file requires first opening the predicted atomic model. Did not find an open atomic model from the same directory. If the atomic model is already open choose it using menu Tools / Structure Prediction / AlphaFold Error Plot or use the open command structure option, for example open /Users/todbutenschon/Desktop/Rieder Lab/AlphaFold/Mxc to Prp40/fold_2026_03_24_11_30_mxc_prp40_summary_confidences_0.json structure #1 If you are trying to open a JSON file that is not AlphaFold PAE data then you need to specify the specific JSON format such as open mole_channels.json format mole > close > open ""/Users/todbutenschon/Desktop/Rieder Lab/AlphaFold/Mxc to > Prp40/fold_2026_03_24_11_30_mxc_prp40_full_data_0_pae.json"" Opening an AlphaFold PAE file requires first opening the predicted atomic model. Did not find an open atomic model from the same directory. If the atomic model is already open choose it using menu Tools / Structure Prediction / AlphaFold Error Plot or use the open command structure option, for example open /Users/todbutenschon/Desktop/Rieder Lab/AlphaFold/Mxc to Prp40/fold_2026_03_24_11_30_mxc_prp40_full_data_0_pae.json structure #1 If you are trying to open a JSON file that is not AlphaFold PAE data then you need to specify the specific JSON format such as open mole_channels.json format mole > open ""/Users/todbutenschon/Desktop/Rieder Lab/AlphaFold/Mxc to > Prp40/fold_2026_03_24_11_30_mxc_prp40_model_0.cif"" Chain information for fold_2026_03_24_11_30_mxc_prp40_model_0.cif #1 --- Chain | Description A | . B | . Computing secondary structure > color bychain > open ""/Users/todbutenschon/Desktop/Rieder Lab/AlphaFold/Mxc to > Prp40/fold_2026_03_24_11_30_mxc_prp40_full_data_0_pae.json"" Opened AlphaFold PAE with values for 2643 residues and atoms > color /A:675-694 lime > color /B:358-433 magenta > color /A:1636 lime > color /B:166 magenta > hide #1 models > show #1 models > select add #1 20264 atoms, 20642 bonds, 2643 residues, 1 model selected > select subtract #1 Nothing selected > color bychain > alphafold contacts /A toAtoms /B distance 4.5 Found 524 residue or atom pairs within distance 4.5 > color /A:680-689 lime > color /B:353-454 magenta > color bychain > alphafold contacts /A toAtoms /B distance 8 Found 3071 residue or atom pairs within distance 8 > alphafold contacts /A toAtoms /B distance 10 Found 6273 residue or atom pairs within distance 10 > color bychain > hide #1.1 models > sequence chain #1/A Alignment identifier is 1/A > sequence chain #1/B Alignment identifier is 1/B > select > /A:7-20,24-33,35-45,55-78,81-89,92-102,117-131,140-146,152-163,170-182,187-196,199-202,204-214,220-238,240-257,262-282,284-297,300-305,309-328,342-354,364-377,382-399,402-411,417-426,428-433,435-437,440-444,449-466,472-487,489-494,498-500,503-520,522-536,539-561,564-580,582-585,589-596,601-635,643-656,662-665,669-672,675-708,714-742,751-766,771-791,798-826,828-855,857-874,877-900,906-925,930-952,961-985,989-998,1011-1023,1028-1044,1052-1067,1073-1100,1104-1135,1145-1169,1176-1200,1205-1216,1223-1231,1233-1258,1272-1290,1293-1295,1300-1303,1315-1329,1349-1352,1360-1375,1378-1397,1404-1425,1433-1453,1455-1464,1467-1474,1478-1499,1507-1519,1521-1527,1535-1552,1554-1558,1561-1587,1592-1597,1601-1609,1613-1626,1635-1649,1651-1669,1676-1688,1693-1708,1711-1741,1744-1768,1770-1773,1776-1813,1815-1836 10868 atoms, 10952 bonds, 1439 residues, 1 model selected > select /A:1340 7 atoms, 7 bonds, 1 residue, 1 model selected > select /A:1340-1362 159 atoms, 175 bonds, 23 residues, 1 model selected > color sel bychain > select add #1 20264 atoms, 20642 bonds, 6273 pseudobonds, 2643 residues, 2 models selected > select subtract #1 Nothing selected > ui tool show AlphaFold > alphafold match #1 Fetching compressed AlphaFold database settings from https://www.rbvi.ucsf.edu/chimerax/data/status/alphafold_database3.json Fetching compressed AlphaFold Q9W363 from https://alphafold.ebi.ac.uk/files/AF-Q9W363-F1-model_v6.cif Fetching compressed AlphaFold Q9VQK5 from https://alphafold.ebi.ac.uk/files/AF-Q9VQK5-F1-model_v6.cif 2 AlphaFold models found using sequence similarity searches: Q9W363 (chain A), Q9VQK5 (chain B) AlphaFold prediction matching fold_2026_03_24_11_30_mxc_prp40_model_0.cif --- Chain| UniProt Id| UniProt Name| RMSD| Length| Seen| % Id B | Q9VQK5 | Q9VQK5_DROME | 56.76 | 806 | 806 | 100 A | Q9W363 | Q9W363_DROME | 82.59 | 1837 | 1837 | 100 Opened 2 AlphaFold models > preset cartoons/nucleotides cylinders/stubs Using preset: Cartoons/Nucleotides / Cylinders/Stubs Changed 0 atom styles Preset expands to these ChimeraX commands: show nucleic hide protein|solvent|H surf hide style (protein|nucleic|solvent) & @@draw_mode=0 stick ~worm cartoon cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 cartoon style ~(nucleic|strand) x round cartoon style (nucleic|strand) x rect cartoon style protein modeh tube rad 2 sides 24 thick 0.6 cartoon style nucleic x round width 1.6 thick 1.6 nucleotides stubs > preset cartoons/nucleotides licorice/ovals Using preset: Cartoons/Nucleotides / Licorice/Ovals Changed 0 atom styles Preset expands to these ChimeraX commands: show nucleic hide protein|solvent|H surf hide style (protein|nucleic|solvent) & @@draw_mode=0 stick ~worm cartoon cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 cartoon style ~(nucleic|strand) x round cartoon style (nucleic|strand) x rect cartoon style protein modeh default arrows f x round width 1 thick 1 cartoon style nucleic x round width 1.6 thick 1.6 nucleotides tube/slab shape ellipsoid > preset cartoons/nucleotides ribbons/slabs Using preset: Cartoons/Nucleotides / Ribbons/Slabs Changed 0 atom styles Preset expands to these ChimeraX commands: show nucleic hide protein|solvent|H surf hide style (protein|nucleic|solvent) & @@draw_mode=0 stick ~worm cartoon cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 cartoon style ~(nucleic|strand) x round cartoon style (nucleic|strand) x rect nucleotides tube/slab shape box > hide #2.2 models > show #2.2 models > hide #2.2 models > hide #2.1 models > show #2.1 models > show #2.2 models > hide #2.2 models > show #2.2 models > hide #2.2 models > hide #2.1 models > show #2.1 models > show #2.2 models > hide #2.2 models > hide #2.1 models > show #2.1 models > show #2.2 models > hide #!2 models > hide #!1 models > show #!2 models > hide #!2 models > show #!2 models > hide #2.1 models > hide #2.2 models > show #2.2 models > show #2.1 models > hide #2.2 models > show #2.2 models > hide #2.2 models > show #2.2 models > hide #2.2 models > show #2.2 models > hide #2.2 models > show #2.2 models > hide #!2 models > show #!1 models > show #!2 models > hide #!1 models > hide #2.2 models > show #2.2 models > show #!1 models > hide #!1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > hide #2.1 models > show #2.1 models > color #2.1 lightgray > color #2.2 white > color #2.2 #d9d9d9ff > hide #2.2 models > show #!1 models > hide #2.1 models > show #2.2 models > color #2.1::c_alpha_distance>=5.0 red > show #2.1 models > hide #2.1 models > color #2.2::c_alpha_distance>=5.0 red Desktop color scheme is dark Unsupported scale factor (0.000000) detected on Display0 ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.11.1 (2026-01-23) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/todbutenschon/Desktop/Rieder Lab/AlphaFold/PRR and > WW/fold_2026_03_24_12_05_prr_ww_model_0.cif"" format mmcif Chain information for fold_2026_03_24_12_05_prr_ww_model_0.cif #1 --- Chain | Description A | . B | . Computing secondary structure > open ""/Users/todbutenschon/Desktop/Rieder Lab/AlphaFold/Mxc to > Prp40/fold_2026_03_24_11_30_mxc_prp40_model_0.cif"" Chain information for fold_2026_03_24_11_30_mxc_prp40_model_0.cif #2 --- Chain | Description A | . B | . Computing secondary structure > hide #1 models > ui autostart false ""Model Panel"" > close #1 > color bychain > select #2/A:1-1837 13848 atoms, 14105 bonds, 1837 residues, 1 model selected > select #2/B:1-806 6416 atoms, 6537 bonds, 806 residues, 1 model selected > select add #2 20264 atoms, 20642 bonds, 2643 residues, 1 model selected > select subtract #2 Nothing selected > select #2/A:1-1837 13848 atoms, 14105 bonds, 1837 residues, 1 model selected > select add #2 20264 atoms, 20642 bonds, 2643 residues, 1 model selected > select subtract #2 Nothing selected > sequence chain #2/A Alignment identifier is 2/A > sequence chain #2/B Alignment identifier is 2/B > select /A:1362-1363 16 atoms, 16 bonds, 2 residues, 1 model selected > select /A:1340-1363 168 atoms, 184 bonds, 24 residues, 1 model selected > select > /A:7-20,24-33,35-45,55-78,81-89,92-102,117-131,140-146,152-163,170-182,187-196,199-202,204-214,220-238,240-257,262-282,284-297,300-305,309-328,342-354,364-377,382-399,402-411,417-426,428-433,435-437,440-444,449-466,472-487,489-494,498-500,503-520,522-536,539-561,564-580,582-585,589-596,601-635,643-656,662-665,669-672,675-708,714-742,751-766,771-791,798-826,828-855,857-874,877-900,906-925,930-952,961-985,989-998,1011-1023,1028-1044,1052-1067,1073-1100,1104-1135,1145-1169,1176-1200,1205-1216,1223-1231,1233-1258,1272-1290,1293-1295,1300-1303,1315-1329,1349-1352,1360-1375,1378-1397,1404-1425,1433-1453,1455-1464,1467-1474,1478-1499,1507-1519,1521-1527,1535-1552,1554-1558,1561-1587,1592-1597,1601-1609,1613-1626,1635-1649,1651-1669,1676-1688,1693-1708,1711-1741,1744-1768,1770-1773,1776-1813,1815-1836 10868 atoms, 10952 bonds, 1439 residues, 1 model selected > select /A:1340-1363 168 atoms, 184 bonds, 24 residues, 1 model selected > select /A:1342 7 atoms, 7 bonds, 1 residue, 1 model selected > select /A:1342-1362 145 atoms, 160 bonds, 21 residues, 1 model selected > select /A:1342-1343 14 atoms, 15 bonds, 2 residues, 1 model selected > select /A:1342-1361 138 atoms, 152 bonds, 20 residues, 1 model selected > select /A:1342-1361 138 atoms, 152 bonds, 20 residues, 1 model selected OpenGL version: 4.1 Metal - 90.5 OpenGL renderer: Apple M3 OpenGL vendor: Apple Python: 3.11.9 Locale: en_US.UTF-8 Qt version: PyQt6 6.9.1, Qt 6.9.0 Qt runtime version: 6.9.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: Mac15,3 Model Number: MR7J3LL/A Chip: Apple M3 Total Number of Cores: 8 (4 Performance and 4 Efficiency) Memory: 8 GB System Firmware Version: 13822.81.10 OS Loader Version: 13822.81.10 Software: System Software Overview: System Version: macOS 26.3.1 (25D2128) Kernel Version: Darwin 25.3.0 Time since boot: 13 days, 20 hours, 22 minutes Graphics/Displays: Apple M3: Chipset Model: Apple M3 Type: GPU Bus: Built-In Total Number of Cores: 10 Vendor: Apple (0x106b) Metal Support: Metal 4 Displays: Color LCD: Display Type: Built-in Liquid Retina XDR Display Resolution: 3024 x 1964 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal DELL S2721QS: Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition) UI Looks like: 1920 x 1080 @ 60.00Hz Mirror: Off Online: Yes Rotation: Supported Installed Packages: aiohappyeyeballs: 2.6.1 aiohttp: 3.13.1 aiosignal: 1.4.0 alabaster: 1.0.0 annotated-types: 0.7.0 anyio: 4.12.1 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.1 attrs: 25.4.0 babel: 2.17.0 beautifulsoup4: 4.13.5 blockdiag: 3.0.0 blosc2: 3.12.2 build: 1.3.0 certifi: 2025.7.14 cftime: 1.6.5 charset-normalizer: 3.4.4 ChimeraX-AddCharge: 1.5.20 ChimeraX-AddH: 2.2.8 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 3.1.1 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Animations: 1.0 ChimeraX-Aniso: 1.3.2 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.61.4 ChimeraX-AtomicLibrary: 14.2.1 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.1 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.6.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3.0 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.11.1 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.4 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.3 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.4 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.7.3 ChimeraX-Label: 1.2 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.2 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.2.2 ChimeraX-MCopy: 1.0 ChimeraX-MCPServer: 0.1.0 ChimeraX-MDcrds: 2.17.2 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-Minimize: 1.3.2 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.22 ChimeraX-ModelPanel: 1.6 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0.1 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.15.2 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.12 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.5 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.4 ChimeraX-ProfileGrids: 1.4.2 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.5 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.3 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.2 ChimeraX-Scenes: 0.3.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.10 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.17.3 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.49.1 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDock: 1.5.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 click: 8.3.1 colorama: 0.4.6 comm: 0.2.3 contourpy: 1.3.3 coverage: 7.13.1 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.1.4 debugpy: 1.8.19 decorator: 5.2.1 docutils: 0.21.2 executing: 2.2.1 filelock: 3.19.1 fonttools: 4.61.1 frozenlist: 1.8.0 funcparserlib: 2.0.0a0 glfw: 2.10.0 grako: 3.16.5 h11: 0.16.0 h5py: 3.15.1 html2text: 2025.4.15 httpcore: 1.0.9 httpx: 0.28.1 httpx-sse: 0.4.3 idna: 3.11 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 1.4.1 iniconfig: 2.3.0 ipykernel: 6.30.1 ipython: 9.5.0 ipython_pygments_lexers: 1.1.1 ipywidgets: 8.1.8 jedi: 0.19.2 Jinja2: 3.1.6 jsonschema: 4.26.0 jsonschema-specifications: 2025.9.1 jupyter_client: 8.6.3 jupyter_core: 5.9.1 jupyterlab_widgets: 3.0.16 kiwisolver: 1.4.9 line_profiler: 5.0.0 lxml: 6.0.2 lz4: 4.3.2 Markdown: 3.8.2 MarkupSafe: 3.0.3 matplotlib: 3.10.7 matplotlib-inline: 0.2.1 mcp: 1.18.0 msgpack: 1.1.1 multidict: 6.7.0 ndindex: 1.10.1 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.14.1 numpy: 1.26.4 OpenMM: 8.2.0 openvr: 1.26.701 packaging: 25.0 ParmEd: 4.2.2 parso: 0.8.5 pep517: 0.13.1 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 11.3.0 pip: 25.2 pkginfo: 1.12.1.2 platformdirs: 4.5.1 pluggy: 1.6.0 prompt_toolkit: 3.0.52 propcache: 0.4.1 psutil: 7.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pybind11: 3.0.1 pycollada: 0.8 pydantic: 2.12.5 pydantic-settings: 2.12.0 pydantic_core: 2.41.5 pydicom: 2.4.4 Pygments: 2.18.0 pynmrstar: 3.3.6 pynrrd: 1.0.0 PyOpenGL: 3.1.10 PyOpenGL-accelerate: 3.1.10 pyopenxr: 1.1.4501 pyparsing: 3.3.2 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.9.1 PyQt6-Qt6: 6.9.2 PyQt6-WebEngine-commercial: 6.9.0 PyQt6-WebEngine-Qt6: 6.9.2 PyQt6_sip: 13.10.2 pytest: 9.0.2 pytest-cov: 7.0.0 python-dateutil: 2.9.0.post0 python-dotenv: 1.2.1 python-multipart: 0.0.21 pyzmq: 27.1.0 qtconsole: 5.7.0 QtPy: 2.4.3 qtshim: 1.2 RandomWords: 0.4.0 referencing: 0.37.0 requests: 2.32.5 roman-numerals: 4.1.0 roman-numerals-py: 4.1.0 rpds-py: 0.30.0 scipy: 1.14.0 setuptools: 80.9.0 sfftk-rw: 0.8.1 six: 1.17.0 snowballstemmer: 3.0.1 sortedcontainers: 2.4.0 soupsieve: 2.8.3 Sphinx: 8.2.3 sphinx-autodoc-typehints: 3.2.0 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 sse-starlette: 3.2.0 stack-data: 0.6.3 starlette: 0.52.1 superqt: 0.7.6 tables: 3.10.2 tcia_utils: 1.5.1 tifffile: 2025.3.13 tinyarray: 1.2.5 tornado: 6.5.4 traitlets: 5.14.3 typing-inspection: 0.4.2 typing_extensions: 4.15.0 urllib3: 2.6.3 uvicorn: 0.40.0 wcwidth: 0.3.2 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 widgetsnbextension: 4.0.15 yarl: 1.22.0 }}} " defect closed normal Window Toolkit duplicate all ChimeraX