id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 20058 Crash in swap_buffers exposing status line during Mac wakeup, macOS 26 chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-26.3.1-arm64-arm-64bit ChimeraX Version: 1.11.1 (2026-01-23 05:51:34 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Bus error Current thread 0x00000001f34a7100 (most recent call first): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 248 in swap_buffers File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 561 in swap_buffers File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/statusbar.py"", line 166 in status File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/statusbar.py"", line 98 in _expose_event File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 414 in event_loop File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1064 in init File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1229 in File """", line 88 in _run_code File """", line 198 in _run_module_as_main Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, 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REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= .note.gnu.proper 320 1 Accelerate framework 256K 2 Activity Tracing 256K 1 AttributeGraph Data 1024K 1 CG image 32K 2 ColorSync 128K 8 CoreAnimation 2352K 111 CoreGraphics 32K 2 CoreUI image data 3504K 28 Foundation 48K 2 Kernel Alloc Once 96K 2 MALLOC 384.9M 90 MALLOC guard page 3920K 4 Mach message 64K 3 OpenGL GLSL 256K 3 PROTECTED_MEMORY 16K 1 STACK GUARD 624K 39 Stack 215.8M 40 Stack Guard 56.0M 1 VM_ALLOCATE 194.7M 156 VM_ALLOCATE (reserved) 160.0M 1 reserved VM address space (unallocated) __AUTH 5847K 644 __AUTH_CONST 88.7M 1027 __CTF 824 1 __DATA 42.1M 1112 __DATA_CONST 59.2M 1160 __DATA_DIRTY 8389K 884 __FONT_DATA 2352 1 __GLSLBUILTINS 5176K 1 __INFO_FILTER 8 1 __LINKEDIT 618.6M 129 __OBJC_RO 78.4M 1 __OBJC_RW 2571K 1 __TEXT 1.5G 1169 __TEXT (graphics) 4672K 14 __TPRO_CONST 128K 2 dyld private memory 1584K 15 mapped file 636.0M 67 page table in kernel 1266K 1 shared memory 3280K 24 =========== ======= ======= TOTAL 4.0G 6752 TOTAL, minus reserved VM space 3.8G 6752 "", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""logWritingSignature"" : ""584b859b11ce2052e0befbe9d89f1ee6c7f31519"", ""bug_type"" : ""309"", ""roots_installed"" : 0, ""trmStatus"" : 1, ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""642da32dea3b2418c750f848"", ""factorPackIds"" : [ ""66d8b2f77cd4b62688efd2cf"" ], ""deploymentId"" : 240000011 }, { ""rolloutId"" : ""64b21a7351cbb02ce3442e4e"", ""factorPackIds"" : [ ""6647f0f7b6a75d3dc32993e7"" ], ""deploymentId"" : 240000042 } ], ""experiments"" : [ ] } } ===== Log before crash start ===== UCSF ChimeraX version: 1.11.1 (2026-01-23) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/todbutenschon/Desktop/Rieder Lab/AlphaFold/PRR and > WW/fold_2026_03_24_12_05_prr_ww_model_0.cif"" format mmcif Chain information for fold_2026_03_24_12_05_prr_ww_model_0.cif #1 --- Chain | Description A | . B | . Computing secondary structure > select /A:1-21 146 atoms, 161 bonds, 21 residues, 1 model selected > select /B:1-124 957 atoms, 999 bonds, 124 residues, 1 model selected > select /A:1-21 146 atoms, 161 bonds, 21 residues, 1 model selected > color bfactor #1 palette alphafold 1103 atoms, 145 residues, atom bfactor range 33.9 to 96.3 > select /A:1-21 146 atoms, 161 bonds, 21 residues, 1 model selected > select /B:1-124 957 atoms, 999 bonds, 124 residues, 1 model selected > select /A:1-21 146 atoms, 161 bonds, 21 residues, 1 model selected > alphafold contacts /A toAtoms /B distance 8 Structure fold_2026_03_24_12_05_prr_ww_model_0.cif #1 does not have PAE data opened > open ""/Users/todbutenschon/Desktop/Rieder Lab/AlphaFold/PRR and > WW/fold_2026_03_24_12_05_prr_ww_full_data_0.json"" Opened AlphaFold PAE with values for 145 residues and atoms > open ""/Users/todbutenschon/Desktop/Rieder Lab/AlphaFold/PRR and > WW/fold_2026_03_24_12_05_prr_ww_full_data_0.json"" format pae Opened AlphaFold PAE with values for 145 residues and atoms > alphafold contacts /A toAtoms /B distance 8 Found 145 residue or atom pairs within distance 8 > select /A:1-21 146 atoms, 161 bonds, 21 residues, 1 model selected > select /B:1-124 957 atoms, 999 bonds, 124 residues, 1 model selected > select /A:1-21 146 atoms, 161 bonds, 21 residues, 1 model selected > select /A:1-21 146 atoms, 161 bonds, 21 residues, 1 model selected > set bgColor white > set bgColor black > color /B:55-99 lime > color /A:1-15 lime > color /B:58-92 magenta > color /A:12-21/B:1 lime > color /B:95-123 magenta > color /A:19 lime > color /B:120 magenta > color /A:1-19 lime > color /B:95-121 magenta > color /A:11 lime > color /B:95 magenta > color /A:10-21 lime > color /B:96-122 magenta > color /A:2-15 lime > color /B:57-92 magenta > color /A:1-5 lime > color /B:95-122 magenta > alphafold contacts /A toAtoms /B distance 4 Found 29 residue or atom pairs within distance 4 > color /B:34 lime > color /B:75 magenta > alphafold contacts /A toAtoms /B distance 3 Found 3 residue or atom pairs within distance 3 > alphafold contacts /A toAtoms /B distance 4 Found 29 residue or atom pairs within distance 4 > set bgColor white > set bgColor black > color /A:1-14 lime > color /B:57-91 magenta > color /A:9-20 lime > color /B:96-121 magenta > color /B:56-81 lime > color /A:4-10 magenta > color /B:93-122 lime > color /A:15-21 magenta > color /A:4 lime > color /B:72 magenta > color /B:10 lime > color /B:66 magenta > color /A:11 lime > color /B:67 magenta > color /B:14 lime > color /B:65 magenta > select /B:1-124 957 atoms, 999 bonds, 124 residues, 1 model selected > select /A:1-21 146 atoms, 161 bonds, 21 residues, 1 model selected > select /B:1-124 957 atoms, 999 bonds, 124 residues, 1 model selected > hide #1.1 models > show #1.1 models > hide #1.1 models > show #1.1 models > hide #1.1 models > show #1.1 models > select add #1 1103 atoms, 1160 bonds, 29 pseudobonds, 145 residues, 2 models selected > select subtract #1 Nothing selected > select add #1 1103 atoms, 1160 bonds, 29 pseudobonds, 145 residues, 2 models selected > select subtract #1.1 1103 atoms, 1160 bonds, 145 residues, 1 model selected > select add #1.1 1103 atoms, 1160 bonds, 29 pseudobonds, 145 residues, 2 models selected > select subtract #1.1 1103 atoms, 1160 bonds, 145 residues, 1 model selected > color /A:1-16 lime > color /B:58-91 magenta > color /A:11-19 lime > color /B:96-120 magenta > color /B:5 lime > color /B:78 magenta > select /A:1-21 146 atoms, 161 bonds, 21 residues, 1 model selected > select /B:1-124 957 atoms, 999 bonds, 124 residues, 1 model selected > hide #!1 models > hide #1.1 models > open ""/Users/todbutenschon/Desktop/Rieder Lab/AlphaFold/PRR and > WW/fold_2026_03_24_12_05_prr_ww_model_0.cif"" Chain information for fold_2026_03_24_12_05_prr_ww_model_0.cif #2 --- Chain | Description A | . B | . Computing secondary structure > open ""/Users/todbutenschon/Desktop/Rieder Lab/AlphaFold/PRR and > WW/fold_2026_03_24_12_05_prr_ww_full_data_0.json"" Opening an AlphaFold PAE file requires first opening the predicted atomic model. Did not find an open atomic model from the same directory. If the atomic model is already open choose it using menu Tools / Structure Prediction / AlphaFold Error Plot or use the open command structure option, for example open /Users/todbutenschon/Desktop/Rieder Lab/AlphaFold/PRR and WW/fold_2026_03_24_12_05_prr_ww_full_data_0.json structure #1 If you are trying to open a JSON file that is not AlphaFold PAE data then you need to specify the specific JSON format such as open mole_channels.json format mole > show #!1 models > hide #!1 models > hide #2 models > close #2 > open ""/Users/todbutenschon/Desktop/Rieder Lab/AlphaFold/Bait and > Prp40/fold_2026_03_24_12_27_bait_prp40_model_0.cif"" Chain information for fold_2026_03_24_12_27_bait_prp40_model_0.cif #2 --- Chain | Description A | . B | . Computing secondary structure > open ""/Users/todbutenschon/Desktop/Rieder Lab/AlphaFold/Bait and > Prp40/fold_2026_03_24_12_27_bait_prp40_full_data_0.json"" Opened AlphaFold PAE with values for 1567 residues and atoms > color #2/A:31-56 lime > color #2/B:297-494 magenta > alphafold contacts /A toAtoms /B distance 4 Interface PAE pseudobonds can only be computed for a single structure, got 2. > select add #1 1103 atoms, 1160 bonds, 29 pseudobonds, 145 residues, 2 models selected > select subtract #1 Nothing selected > alphafold contacts /A toAtoms /B distance 4 Interface PAE pseudobonds can only be computed for a single structure, got 2. > select #2/A:1-761 5753 atoms, 5863 bonds, 761 residues, 1 model selected > select #2/B:1-806 6416 atoms, 6537 bonds, 806 residues, 1 model selected > select #2/A:1-761 5753 atoms, 5863 bonds, 761 residues, 1 model selected > select #2/A:1-761 5753 atoms, 5863 bonds, 761 residues, 1 model selected > select #2/B:1-806 6416 atoms, 6537 bonds, 806 residues, 1 model selected > select #2/A:1-761 5753 atoms, 5863 bonds, 761 residues, 1 model selected > select add #2 12169 atoms, 12400 bonds, 1567 residues, 1 model selected > color #2/A:28-64 lime > color #2/B:274-517 magenta > select subtract #2 Nothing selected > color #2/A:26-62 lime > color #2/B:278-532 magenta > alphafold contacts /A toAtoms /B distance 4 Interface PAE pseudobonds can only be computed for a single structure, got 2. > color #2/A:362 lime > color #2/B:417 magenta > color #2/A:364 lime > color #2/B:181 magenta > select add #2 12169 atoms, 12400 bonds, 1567 residues, 1 model selected > alphafold contacts /A toAtoms /B distance 4 Interface PAE pseudobonds can only be computed for a single structure, got 2. > select subtract #2 Nothing selected > open ""/Users/todbutenschon/Desktop/Rieder Lab/AlphaFold/Bait and > Prp40/fold_2026_03_24_12_27_bait_prp40_full_data_0.json"" Opened AlphaFold PAE with values for 1567 residues and atoms > color #2/A:28-56 lime > color #2/B:285-502 magenta > color #2/A:617-648 lime > color #2/B:58-143 magenta > alphafold contacts /A toAtoms /B distance 4 Interface PAE pseudobonds can only be computed for a single structure, got 2. > alphafold contacts /A toAtoms /B distance 8 Interface PAE pseudobonds can only be computed for a single structure, got 2. > hide #2 models > show #!1 models > color #1/A:2-14 lime > color #1/B:58-92 magenta > color #1/A:11 lime > color #1/B:75 magenta > alphafold contacts /A toAtoms /B distance 8 Interface PAE pseudobonds can only be computed for a single structure, got 2. > close #2 > close #1 > open ""/Users/todbutenschon/Desktop/Rieder Lab/AlphaFold/Bait and > Prp40/fold_2026_03_24_12_27_bait_prp40_model_0.cif"" format mmcif Chain information for fold_2026_03_24_12_27_bait_prp40_model_0.cif #1 --- Chain | Description A | . B | . Computing secondary structure > close > open ""/Users/todbutenschon/Desktop/Rieder Lab/AlphaFold/Bait and > Prp40/fold_2026_03_24_12_27_bait_prp40_full_data_0.json"" format pae Opening an AlphaFold PAE file requires first opening the predicted atomic model. Did not find an open atomic model from the same directory. If the atomic model is already open choose it using menu Tools / Structure Prediction / AlphaFold Error Plot or use the open command structure option, for example open /Users/todbutenschon/Desktop/Rieder Lab/AlphaFold/Bait and Prp40/fold_2026_03_24_12_27_bait_prp40_full_data_0.json structure #1 If you are trying to open a JSON file that is not AlphaFold PAE data then you need to specify the specific JSON format such as open mole_channels.json format mole > open ""/Users/todbutenschon/Desktop/Rieder Lab/AlphaFold/Bait and > Prp40/fold_2026_03_24_12_27_bait_prp40_model_0.cif"" format mmcif Chain information for fold_2026_03_24_12_27_bait_prp40_model_0.cif #1 --- Chain | Description A | . B | . Computing secondary structure > open ""/Users/todbutenschon/Desktop/Rieder Lab/AlphaFold/Bait and > Prp40/fold_2026_03_24_12_27_bait_prp40_full_data_0.json"" format pae Opened AlphaFold PAE with values for 1567 residues and atoms > open ""/Users/todbutenschon/Desktop/Rieder Lab/AlphaFold/Bait and > Prp40/fold_2026_03_24_12_27_bait_prp40_full_data_0.json"" format pae Opened AlphaFold PAE with values for 1567 residues and atoms > open ""/Users/todbutenschon/Desktop/Rieder Lab/AlphaFold/Bait and > Prp40/fold_2026_03_24_12_27_bait_prp40_model_0.cif"" format mmcif Chain information for fold_2026_03_24_12_27_bait_prp40_model_0.cif #2 --- Chain | Description A | . B | . Computing secondary structure > close #2 > color /A:28-56 lime > color /B:284-496 magenta > alphafold contacts /A toAtoms /B distance 8 Found 990 residue or atom pairs within distance 8 > alphafold contacts /A toAtoms /B distance 4 Found 148 residue or atom pairs within distance 4 > color /A:617-648 lime > color /B:59-142 magenta > alphafold contacts /A toAtoms /B distance 4 Found 148 residue or atom pairs within distance 4 > alphafold contacts /A toAtoms /B distance 8 Found 990 residue or atom pairs within distance 8 > color /B:56-151 lime > color /B:217-654 lime > color /A:26-56 lime > color /B:278-509 magenta > color /A:615-648 lime > color /B:63-139 magenta > alphafold contacts /A toAtoms /B distance 10 Found 1974 residue or atom pairs within distance 10 > alphafold contacts /A toAtoms /B distance 4.5 Found 190 residue or atom pairs within distance 4.5 > close > open ""/Users/todbutenschon/Desktop/Rieder Lab/AlphaFold/Bait and > Prp40/fold_2026_03_24_12_27_bait_prp40_full_data_0.json"" format pae Opening an AlphaFold PAE file requires first opening the predicted atomic model. Did not find an open atomic model from the same directory. If the atomic model is already open choose it using menu Tools / Structure Prediction / AlphaFold Error Plot or use the open command structure option, for example open /Users/todbutenschon/Desktop/Rieder Lab/AlphaFold/Bait and Prp40/fold_2026_03_24_12_27_bait_prp40_full_data_0.json structure #1 If you are trying to open a JSON file that is not AlphaFold PAE data then you need to specify the specific JSON format such as open mole_channels.json format mole Unsupported scale factor (0.000000) detected on Display0 ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.11.1 (2026-01-23) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 90.5 OpenGL renderer: Apple M3 OpenGL vendor: Apple Python: 3.11.9 Locale: en_US.UTF-8 Qt version: PyQt6 6.9.1, Qt 6.9.0 Qt runtime version: 6.9.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: Mac15,3 Model Number: MR7J3LL/A Chip: Apple M3 Total Number of Cores: 8 (4 Performance and 4 Efficiency) Memory: 8 GB System Firmware Version: 13822.81.10 OS Loader Version: 13822.81.10 Software: System Software Overview: System Version: macOS 26.3.1 (25D2128) Kernel Version: Darwin 25.3.0 Time since boot: 13 days, 19 hours, 35 minutes Graphics/Displays: Apple M3: Chipset Model: Apple M3 Type: GPU Bus: Built-In Total Number of Cores: 10 Vendor: Apple (0x106b) Metal Support: Metal 4 Displays: Color LCD: Display Type: Built-in Liquid Retina XDR Display Resolution: 3024 x 1964 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal DELL S2721QS: Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition) UI Looks like: 1920 x 1080 @ 60.00Hz Mirror: Off Online: Yes Rotation: Supported Installed Packages: aiohappyeyeballs: 2.6.1 aiohttp: 3.13.1 aiosignal: 1.4.0 alabaster: 1.0.0 annotated-types: 0.7.0 anyio: 4.12.1 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.1 attrs: 25.4.0 babel: 2.17.0 beautifulsoup4: 4.13.5 blockdiag: 3.0.0 blosc2: 3.12.2 build: 1.3.0 certifi: 2025.7.14 cftime: 1.6.5 charset-normalizer: 3.4.4 ChimeraX-AddCharge: 1.5.20 ChimeraX-AddH: 2.2.8 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 3.1.1 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Animations: 1.0 ChimeraX-Aniso: 1.3.2 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.61.4 ChimeraX-AtomicLibrary: 14.2.1 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.1 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.6.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3.0 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.11.1 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.4 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.3 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.4 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.7.3 ChimeraX-Label: 1.2 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.2 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.2.2 ChimeraX-MCopy: 1.0 ChimeraX-MCPServer: 0.1.0 ChimeraX-MDcrds: 2.17.2 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-Minimize: 1.3.2 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.22 ChimeraX-ModelPanel: 1.6 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0.1 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.15.2 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.12 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.5 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.4 ChimeraX-ProfileGrids: 1.4.2 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.5 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.3 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.2 ChimeraX-Scenes: 0.3.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.10 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.17.3 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.49.1 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDock: 1.5.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 click: 8.3.1 colorama: 0.4.6 comm: 0.2.3 contourpy: 1.3.3 coverage: 7.13.1 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.1.4 debugpy: 1.8.19 decorator: 5.2.1 docutils: 0.21.2 executing: 2.2.1 filelock: 3.19.1 fonttools: 4.61.1 frozenlist: 1.8.0 funcparserlib: 2.0.0a0 glfw: 2.10.0 grako: 3.16.5 h11: 0.16.0 h5py: 3.15.1 html2text: 2025.4.15 httpcore: 1.0.9 httpx: 0.28.1 httpx-sse: 0.4.3 idna: 3.11 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 1.4.1 iniconfig: 2.3.0 ipykernel: 6.30.1 ipython: 9.5.0 ipython_pygments_lexers: 1.1.1 ipywidgets: 8.1.8 jedi: 0.19.2 Jinja2: 3.1.6 jsonschema: 4.26.0 jsonschema-specifications: 2025.9.1 jupyter_client: 8.6.3 jupyter_core: 5.9.1 jupyterlab_widgets: 3.0.16 kiwisolver: 1.4.9 line_profiler: 5.0.0 lxml: 6.0.2 lz4: 4.3.2 Markdown: 3.8.2 MarkupSafe: 3.0.3 matplotlib: 3.10.7 matplotlib-inline: 0.2.1 mcp: 1.18.0 msgpack: 1.1.1 multidict: 6.7.0 ndindex: 1.10.1 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.14.1 numpy: 1.26.4 OpenMM: 8.2.0 openvr: 1.26.701 packaging: 25.0 ParmEd: 4.2.2 parso: 0.8.5 pep517: 0.13.1 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 11.3.0 pip: 25.2 pkginfo: 1.12.1.2 platformdirs: 4.5.1 pluggy: 1.6.0 prompt_toolkit: 3.0.52 propcache: 0.4.1 psutil: 7.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pybind11: 3.0.1 pycollada: 0.8 pydantic: 2.12.5 pydantic-settings: 2.12.0 pydantic_core: 2.41.5 pydicom: 2.4.4 Pygments: 2.18.0 pynmrstar: 3.3.6 pynrrd: 1.0.0 PyOpenGL: 3.1.10 PyOpenGL-accelerate: 3.1.10 pyopenxr: 1.1.4501 pyparsing: 3.3.2 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.9.1 PyQt6-Qt6: 6.9.2 PyQt6-WebEngine-commercial: 6.9.0 PyQt6-WebEngine-Qt6: 6.9.2 PyQt6_sip: 13.10.2 pytest: 9.0.2 pytest-cov: 7.0.0 python-dateutil: 2.9.0.post0 python-dotenv: 1.2.1 python-multipart: 0.0.21 pyzmq: 27.1.0 qtconsole: 5.7.0 QtPy: 2.4.3 qtshim: 1.2 RandomWords: 0.4.0 referencing: 0.37.0 requests: 2.32.5 roman-numerals: 4.1.0 roman-numerals-py: 4.1.0 rpds-py: 0.30.0 scipy: 1.14.0 setuptools: 80.9.0 sfftk-rw: 0.8.1 six: 1.17.0 snowballstemmer: 3.0.1 sortedcontainers: 2.4.0 soupsieve: 2.8.3 Sphinx: 8.2.3 sphinx-autodoc-typehints: 3.2.0 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 sse-starlette: 3.2.0 stack-data: 0.6.3 starlette: 0.52.1 superqt: 0.7.6 tables: 3.10.2 tcia_utils: 1.5.1 tifffile: 2025.3.13 tinyarray: 1.2.5 tornado: 6.5.4 traitlets: 5.14.3 typing-inspection: 0.4.2 typing_extensions: 4.15.0 urllib3: 2.6.3 uvicorn: 0.40.0 wcwidth: 0.3.2 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 widgetsnbextension: 4.0.15 yarl: 1.22.0 }}} " defect closed normal Window Toolkit duplicate all ChimeraX