id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 20048 Crash in NSAccessibility routines chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-15.7.4-x86_64-i386-64bit ChimeraX Version: 1.11.1 (2026-01-23 05:51:34 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Thread 0x0000700012a89000 (most recent call first): File ""/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 324 in wait File ""/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 622 in wait File ""/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1392 in run File ""/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Current thread 0x00007ff84cbea100 (most recent call first): File ""/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 368 in event_loop File ""/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1057 in init File ""/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1220 in File """", line 88 in _run_code File """", line 198 in _run_module_as_main Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, 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""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""logWritingSignature"" : ""51180383c84fa45c95c9035508ec5694c5cfed33"", ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""648cada15dbc71671bb3aa1b"", ""factorPackIds"" : { ""SIRI_EXPERIENCE_CAM"" : ""65a81173096f6a1f1ba46525"" }, ""deploymentId"" : 240000116 }, { ""rolloutId"" : ""645eb1d0417dab722a215927"", ""factorPackIds"" : { }, ""deploymentId"" : 240000005 } ], ""experiments"" : [ ] } } ===== Log before crash start ===== UCSF ChimeraX version: 1.10 (2025-06-26) © 2016-2025 Regents of the University of California. All rights reserved. > open /Users/zln/Desktop/Predicted_AF3_Human_RNase_MRP_hide_RNA.cxs Log from Sun Mar 22 19:39:27 2026UCSF ChimeraX version: 1.10 (2025-06-26) © 2016-2025 Regents of the University of California. All rights reserved. > open /Users/zln/Desktop/Predicted_AF3_Human_RNase_MRP_hide_RNA.cxs Log from Sun Mar 22 19:38:33 2026UCSF ChimeraX version: 1.10 (2025-06-26) © 2016-2025 Regents of the University of California. All rights reserved. > open /Users/zln/Desktop/Predicted_AF3_Human_RNase_MRP_hide_RNA.cxs Log from Sun Mar 22 19:37:03 2026UCSF ChimeraX version: 1.10 (2025-06-26) © 2016-2025 Regents of the University of California. All rights reserved. > open /Users/zln/Desktop/Predicted_AF3_Human_RNase_MRP_hide_RNA.cxs Log from Sun Mar 22 19:24:28 2026UCSF ChimeraX version: 1.10 (2025-06-26) © 2016-2025 Regents of the University of California. All rights reserved. > open /Users/zln/Desktop/Predicted_AF3_Human_RNase_MRP_hide_RNA.cxs Log from Sun Mar 22 19:23:49 2026UCSF ChimeraX version: 1.10 (2025-06-26) © 2016-2025 Regents of the University of California. All rights reserved. > open /Users/zln/Desktop/Predicted_AF3_Human_RNase_MRP_hide_RNA.cxs Log from Sun Mar 22 19:22:59 2026UCSF ChimeraX version: 1.10 (2025-06-26) © 2016-2025 Regents of the University of California. All rights reserved. > open /Users/zln/Desktop/Predicted_AF3_Human_RNase_MRP.cxs Log from Sun Mar 22 19:20:36 2026UCSF ChimeraX version: 1.10 (2025-06-26) © 2016-2025 Regents of the University of California. All rights reserved. > open /Users/zln/Desktop/Predicted_AF3_Human_RNase_MRP.cxs Log from Sun Mar 22 19:17:00 2026UCSF ChimeraX version: 1.10 (2025-06-26) © 2016-2025 Regents of the University of California. All rights reserved. > open /Users/zln/Desktop/Predicted_AF3_Human_RNase_MRP.cxs Log from Sun Mar 22 18:58:50 2026UCSF ChimeraX version: 1.10 (2025-06-26) © 2016-2025 Regents of the University of California. All rights reserved. > open /Users/zln/Desktop/Predicted_AF3_Human_RNase_MRP.cxs Log from Sun Mar 22 18:57:12 2026UCSF ChimeraX version: 1.10 (2025-06-26) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > /Users/zln/Documents/CEMCS/Chen_Lab/Projects/RNase/Structures_AF3_predicted/fold_human_rnase_mrp_predicted/fold_human_rnase_mrp_predicted_model_0.cif Chain information for fold_human_rnase_mrp_predicted_model_0.cif #1 --- Chain | Description A | . B | . C | . D | . E | . F | . G | . H I | . J | . K | . L | . > open > ""/Users/zln/Documents/CEMCS/Chen_Lab/Projects/RNase/Structures_published/7C79_yeast > RNase MRP alone.cif"" 7C79_yeast RNase MRP alone.cif title: Cryo-EM structure of yeast Ribonuclease MRP [more info...] Chain information for 7C79_yeast RNase MRP alone.cif #2 --- Chain | Description | UniProt A | Ribonuclease MRP RNA subunit NME1 | B | Ribonucleases P/MRP protein subunit POP1 | POP1_YEAST 1-875 C | Ribonucleases P/MRP protein subunit POP3 | POP3_YEAST 1-195 D | RNases MRP/P 32.9 kDa subunit | POP4_YEAST 1-279 E | Ribonuclease P/MRP protein subunit POP5 | POP5_YEAST 1-173 F | Ribonucleases P/MRP protein subunit POP6 | POP6_YEAST 1-158 G | Ribonucleases P/MRP protein subunit POP7 | POP7_YEAST 1-140 H | Ribonucleases P/MRP protein subunit POP8 | POP8_YEAST 1-133 I J | Ribonuclease P/MRP protein subunit RPP1 | RPP1_YEAST 1-293 K | Ribonuclease MRP protein subunit SNM1 | RMRP_YEAST 1-198 L | Ribonuclease MRP protein subunit RMP1 | RMP1_YEAST 1-201 Non-standard residues in 7C79_yeast RNase MRP alone.cif #2 --- MG — magnesium ion ZN — zinc ion > open > ""/Users/zln/Documents/CEMCS/Chen_Lab/Projects/RNase/Structures_published/6AHR_Atomic > model of human RNase P holoenzyme.cif"" 6AHR_Atomic model of human RNase P holoenzyme.cif title: Cryo-EM structure of human Ribonuclease P [more info...] Chain information for 6AHR_Atomic model of human RNase P holoenzyme.cif #3 --- Chain | Description | UniProt A | H1 RNA | B | Ribonucleases P/MRP protein subunit POP1 | POP1_HUMAN 1-1024 C | Ribonuclease P protein subunit p38 | RPP38_HUMAN 1-283 D | Ribonuclease P protein subunit p29 | RPP29_HUMAN 1-220 E | Ribonuclease P/MRP protein subunit POP5 | POP5_HUMAN 1-163 F | Ribonuclease P protein subunit p25 | RPP25_HUMAN 1-199 G | Ribonuclease P protein subunit p20 | POP7_HUMAN 1-140 H | Ribonuclease P protein subunit p14 | RPP14_HUMAN 1-124 I J | Ribonuclease P protein subunit p30 | RPP30_HUMAN 1-268 K | Ribonuclease P protein subunit p21 | RPP21_HUMAN 1-154 L | Ribonuclease P protein subunit p40 | RPP40_HUMAN 1-363 Non-standard residues in 6AHR_Atomic model of human RNase P holoenzyme.cif #3 --- ZN — zinc ion > show cartoons Computing secondary structure > hide atoms > view > ui tool show Matchmaker > matchmaker #!2 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker fold_human_rnase_mrp_predicted_model_0.cif, chain L (#1) with 7C79_yeast RNase MRP alone.cif, chain A (#2), sequence alignment score = 1136.5 RMSD between 27 pruned atom pairs is 1.213 angstroms; (across all 264 pairs: 36.419) > set bgColor white > graphics silhouettes true > save /Users/zln/Desktop/Predicted_AF3_Human_RNase_MRP.cxs ——— End of log from Sun Mar 22 18:57:12 2026 ——— > view name session-start opened ChimeraX session > ui tool show Matchmaker > matchmaker #!3 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker fold_human_rnase_mrp_predicted_model_0.cif, chain A (#1) with 6AHR_Atomic model of human RNase P holoenzyme.cif, chain B (#3), sequence alignment score = 4594.2 RMSD between 517 pruned atom pairs is 1.204 angstroms; (across all 774 pairs: 3.265) > color #1 white > color #3 #fffb00ff > color #2 #0096ffff > hide #!3 models > save /Users/zln/Desktop/Predicted_AF3_Human_RNase_MRP.cxs ——— End of log from Sun Mar 22 18:58:50 2026 ——— > view name session-start opened ChimeraX session > hide #!2 models > show #!3 models > open > /Users/zln/Documents/CEMCS/Chen_Lab/Projects/RNase/Structures_AF3_predicted/fold_human_rnase_p_predicted/fold_human_rnase_p_predicted_model_0.cif Chain information for fold_human_rnase_p_predicted_model_0.cif #4 --- Chain | Description A | . B | . C | . D | . E | . F | . G | . H | . I | . J | . K | . L | . > show #1,4#!3 cartoons Computing secondary structure > show #1,4#!3 cartoons > hide #1,4#!3 atoms > color #4 #d4fb79ff > color #4 #7a81ffff > save /Users/zln/Desktop/Predicted_AF3_Human_RNase_MRP.cxs ——— End of log from Sun Mar 22 19:17:00 2026 ——— > view name session-start opened ChimeraX session > open > ""/Users/zln/Documents/CEMCS/Chen_Lab/Projects/RNase/Structures_published/7C79_yeast > RNase MRP alone.cif"" 7C79_yeast RNase MRP alone.cif title: Cryo-EM structure of yeast Ribonuclease MRP [more info...] Chain information for 7C79_yeast RNase MRP alone.cif #5 --- Chain | Description | UniProt A | Ribonuclease MRP RNA subunit NME1 | B | Ribonucleases P/MRP protein subunit POP1 | POP1_YEAST 1-875 C | Ribonucleases P/MRP protein subunit POP3 | POP3_YEAST 1-195 D | RNases MRP/P 32.9 kDa subunit | POP4_YEAST 1-279 E | Ribonuclease P/MRP protein subunit POP5 | POP5_YEAST 1-173 F | Ribonucleases P/MRP protein subunit POP6 | POP6_YEAST 1-158 G | Ribonucleases P/MRP protein subunit POP7 | POP7_YEAST 1-140 H | Ribonucleases P/MRP protein subunit POP8 | POP8_YEAST 1-133 I J | Ribonuclease P/MRP protein subunit RPP1 | RPP1_YEAST 1-293 K | Ribonuclease MRP protein subunit SNM1 | RMRP_YEAST 1-198 L | Ribonuclease MRP protein subunit RMP1 | RMP1_YEAST 1-201 Non-standard residues in 7C79_yeast RNase MRP alone.cif #5 --- MG — magnesium ion ZN — zinc ion > color #5 #ff8ad8ff > show #1,4#!3,5 cartoons > hide #1,4#!3,5 atoms > ui tool show Matchmaker > matchmaker #!5 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker fold_human_rnase_mrp_predicted_model_0.cif, chain L (#1) with 7C79_yeast RNase MRP alone.cif, chain A (#5), sequence alignment score = 1136.5 RMSD between 27 pruned atom pairs is 1.213 angstroms; (across all 264 pairs: 36.419) > save /Users/zln/Desktop/Predicted_AF3_Human_RNase_MRP.cxs ——— End of log from Sun Mar 22 19:20:36 2026 ——— > view name session-start opened ChimeraX session > close #5 > save /Users/zln/Desktop/Predicted_AF3_Human_RNase_MRP.cxs > save /Users/zln/Desktop/Predicted_AF3_Human_RNase_MRP_hide_RNA.cxs ——— End of log from Sun Mar 22 19:22:59 2026 ——— > view name session-start opened ChimeraX session > hide #!3 models > hide #4 models > hide #1/L cartoons > save /Users/zln/Desktop/Predicted_AF3_Human_RNase_MRP_hide_RNA.cxs > hide #1 models > show #!2 models > hide #2/A cartoons > save /Users/zln/Desktop/Predicted_AF3_Human_RNase_MRP_hide_RNA.cxs ——— End of log from Sun Mar 22 19:23:49 2026 ——— > view name session-start opened ChimeraX session > show #!3 models > hide #!2 models > hide #3/A cartoons > save /Users/zln/Desktop/Predicted_AF3_Human_RNase_MRP_hide_RNA.cxs ——— End of log from Sun Mar 22 19:24:28 2026 ——— > view name session-start opened ChimeraX session > ui tool show Matchmaker > matchmaker #4 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker fold_human_rnase_mrp_predicted_model_0.cif, chain A (#1) with fold_human_rnase_p_predicted_model_0.cif, chain F (#4), sequence alignment score = 5190 RMSD between 728 pruned atom pairs is 0.610 angstroms; (across all 1024 pairs: 18.331) > hide #4/L cartoons > save /Users/zln/Desktop/Predicted_AF3_Human_RNase_MRP_hide_RNA.cxs ——— End of log from Sun Mar 22 19:37:03 2026 ——— > view name session-start opened ChimeraX session > open > ""/Users/zln/Documents/CEMCS/Chen_Lab/Projects/RNase/Structures_published/6AGB_Atomic > model of yeast Ribonuclease P.cif"" 6AGB_Atomic model of yeast Ribonuclease P.cif title: Cryo-EM structure of yeast Ribonuclease P [more info...] Chain information for 6AGB_Atomic model of yeast Ribonuclease P.cif #5 --- Chain | Description | UniProt A | Ribonuclease P RNA | B | Ribonucleases P/MRP protein subunit POP1 | POP1_YEAST 1-875 C | Ribonucleases P/MRP protein subunit POP3 | POP3_YEAST 1-195 D | RNases MRP/P 32.9 kDa subunit | POP4_YEAST 1-279 E | Ribonuclease P/MRP protein subunit POP5 | POP5_YEAST 1-173 F | Ribonucleases P/MRP protein subunit POP6 | POP6_YEAST 1-158 G | Ribonucleases P/MRP protein subunit POP7 | POP7_YEAST 1-140 H | Ribonucleases P/MRP protein subunit POP8 | POP8_YEAST 1-133 I J | Ribonuclease P/MRP protein subunit RPP1 | RPP1_YEAST 1-293 K | Ribonuclease P protein subunit RPR2 | RPR2_YEAST 1-144 Non-standard residues in 6AGB_Atomic model of yeast Ribonuclease P.cif #5 --- ZN — zinc ion > color #5 #ff8ad8ff > show #!3,5 cartoons > hide #!3,5 atoms > undo [Repeated 1 time(s)] > hide #!3 models > view > show #!5 cartoons > hide #!5 atoms > save /Users/zln/Desktop/Predicted_AF3_Human_RNase_MRP_hide_RNA.cxs ——— End of log from Sun Mar 22 19:38:33 2026 ——— > view name session-start opened ChimeraX session > hide #5/A cartoons > save /Users/zln/Desktop/Predicted_AF3_Human_RNase_MRP_hide_RNA.cxs ——— End of log from Sun Mar 22 19:39:27 2026 ——— > view name session-start opened ChimeraX session > ui tool show Matchmaker > matchmaker #!5 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker fold_human_rnase_mrp_predicted_model_0.cif, chain L (#1) with 6AGB_Atomic model of yeast Ribonuclease P.cif, chain A (#5), sequence alignment score = 1093.3 RMSD between 3 pruned atom pairs is 1.237 angstroms; (across all 265 pairs: 76.149) > show #1 models > ui tool show Matchmaker > matchmaker #!5 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker fold_human_rnase_mrp_predicted_model_0.cif, chain L (#1) with 6AGB_Atomic model of yeast Ribonuclease P.cif, chain A (#5), sequence alignment score = 1093.3 RMSD between 3 pruned atom pairs is 1.237 angstroms; (across all 265 pairs: 76.149) > view > select add #5 27190 atoms, 28468 bonds, 311 pseudobonds, 2774 residues, 4 models selected > ui mousemode right ""translate selected models"" > ui mousemode right ""rotate selected models"" > view matrix models > #5,-0.15905,-0.6674,-0.72752,219.67,-0.31736,0.73235,-0.60245,74.989,0.93487,0.13506,-0.32829,-137.69 > view matrix models > #5,0.46648,-0.88453,-0.00084201,26.91,-0.33422,-0.17538,-0.92603,278.17,0.81896,0.43226,-0.37744,-157.66 > view matrix models > #5,0.13569,0.58569,0.7991,-285.35,-0.8636,0.46523,-0.19434,146.01,-0.48558,-0.66373,0.56892,90.816 > view matrix models > #5,-0.12308,0.56332,0.81702,-239.77,-0.56463,0.63729,-0.52446,120.49,-0.81612,-0.52586,0.23963,179.94 > ui mousemode right ""translate selected models"" > view matrix models > #5,-0.12308,0.56332,0.81702,-212.33,-0.56463,0.63729,-0.52446,71.882,-0.81612,-0.52586,0.23963,195.75 > select subtract #5 Nothing selected ===== Log before crash end ===== Log: Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.11.1 (2026-01-23) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 INTEL-23.7.4 OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 655 OpenGL vendor: Intel Inc. Python: 3.11.9 Locale: en_US.UTF-8 Qt version: PyQt6 6.9.1, Qt 6.9.0 Qt runtime version: 6.9.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro15,2 Processor Name: Quad-Core Intel Core i7 Processor Speed: 2.8 GHz Number of Processors: 1 Total Number of Cores: 4 L2 Cache (per Core): 256 KB L3 Cache: 8 MB Hyper-Threading Technology: Enabled Memory: 16 GB System Firmware Version: 2094.80.5.0.0 (iBridge: 23.16.13120.0.0,0) OS Loader Version: 583~2317 Software: System Software Overview: System Version: macOS 15.7.4 (24G517) Kernel Version: Darwin 24.6.0 Time since boot: 20天11小时24分钟 Graphics/Displays: Intel Iris Plus Graphics 655: Chipset Model: Intel Iris Plus Graphics 655 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x3ea5 Revision ID: 0x0001 Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Framebuffer Depth: 24-Bit Color (ARGB8888) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: aiohappyeyeballs: 2.6.1 aiohttp: 3.13.1 aiosignal: 1.4.0 alabaster: 1.0.0 annotated-types: 0.7.0 anyio: 4.12.1 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.1 attrs: 25.4.0 babel: 2.17.0 beautifulsoup4: 4.13.5 blockdiag: 3.0.0 blosc2: 3.12.2 build: 1.3.0 certifi: 2025.7.14 cftime: 1.6.5 charset-normalizer: 3.4.4 ChimeraX-AddCharge: 1.5.20 ChimeraX-AddH: 2.2.8 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 3.1.1 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Animations: 1.0 ChimeraX-Aniso: 1.3.2 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.61.4 ChimeraX-AtomicLibrary: 14.2.1 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.1 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.6.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3.0 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.11.1 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.4 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.3 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.4 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.7.3 ChimeraX-Label: 1.2 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.2 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.2.2 ChimeraX-MCopy: 1.0 ChimeraX-MCPServer: 0.1.0 ChimeraX-MDcrds: 2.17.2 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-Minimize: 1.3.2 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.22 ChimeraX-ModelPanel: 1.6 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0.1 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.15.2 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.12 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.5 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.4 ChimeraX-ProfileGrids: 1.4.2 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.5 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.3 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.2 ChimeraX-Scenes: 0.3.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.10 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.17.3 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.49.1 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDock: 1.5.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 click: 8.3.1 colorama: 0.4.6 comm: 0.2.3 contourpy: 1.3.3 coverage: 7.13.1 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.1.4 debugpy: 1.8.19 decorator: 5.2.1 docutils: 0.21.2 executing: 2.2.1 filelock: 3.19.1 fonttools: 4.61.1 frozenlist: 1.8.0 funcparserlib: 2.0.0a0 glfw: 2.10.0 grako: 3.16.5 h11: 0.16.0 h5py: 3.15.1 html2text: 2025.4.15 httpcore: 1.0.9 httpx: 0.28.1 httpx-sse: 0.4.3 idna: 3.11 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 1.4.1 iniconfig: 2.3.0 ipykernel: 6.30.1 ipython: 9.5.0 ipython_pygments_lexers: 1.1.1 ipywidgets: 8.1.8 jedi: 0.19.2 Jinja2: 3.1.6 jsonschema: 4.26.0 jsonschema-specifications: 2025.9.1 jupyter_client: 8.6.3 jupyter_core: 5.9.1 jupyterlab_widgets: 3.0.16 kiwisolver: 1.4.9 line_profiler: 5.0.0 lxml: 6.0.2 lz4: 4.3.2 Markdown: 3.8.2 MarkupSafe: 3.0.3 matplotlib: 3.10.7 matplotlib-inline: 0.2.1 mcp: 1.18.0 msgpack: 1.1.1 multidict: 6.7.0 ndindex: 1.10.1 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.14.1 numpy: 1.26.4 OpenMM: 8.2.0 openvr: 1.26.701 packaging: 25.0 ParmEd: 4.2.2 parso: 0.8.5 pep517: 0.13.1 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 11.3.0 pip: 25.2 pkginfo: 1.12.1.2 platformdirs: 4.5.1 pluggy: 1.6.0 prompt_toolkit: 3.0.52 propcache: 0.4.1 psutil: 7.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pybind11: 3.0.1 pycollada: 0.8 pydantic: 2.12.5 pydantic-settings: 2.12.0 pydantic_core: 2.41.5 pydicom: 2.4.4 Pygments: 2.18.0 pynmrstar: 3.3.6 pynrrd: 1.0.0 PyOpenGL: 3.1.10 PyOpenGL-accelerate: 3.1.10 pyopenxr: 1.1.4501 pyparsing: 3.3.2 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.9.1 PyQt6-Qt6: 6.9.2 PyQt6-WebEngine-commercial: 6.9.0 PyQt6-WebEngine-Qt6: 6.9.2 PyQt6_sip: 13.10.2 pytest: 9.0.2 pytest-cov: 7.0.0 python-dateutil: 2.9.0.post0 python-dotenv: 1.2.1 python-multipart: 0.0.21 pyzmq: 27.1.0 qtconsole: 5.7.0 QtPy: 2.4.3 qtshim: 1.2 RandomWords: 0.4.0 referencing: 0.37.0 requests: 2.32.5 roman-numerals: 4.1.0 roman-numerals-py: 4.1.0 rpds-py: 0.30.0 scipy: 1.14.0 setuptools: 80.9.0 sfftk-rw: 0.8.1 six: 1.17.0 snowballstemmer: 3.0.1 sortedcontainers: 2.4.0 soupsieve: 2.8.3 Sphinx: 8.2.3 sphinx-autodoc-typehints: 3.2.0 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 sse-starlette: 3.2.0 stack-data: 0.6.3 starlette: 0.52.1 superqt: 0.7.6 tables: 3.10.2 tcia_utils: 1.5.1 tifffile: 2025.3.13 tinyarray: 1.2.5 tornado: 6.5.4 traitlets: 5.14.3 typing-inspection: 0.4.2 typing_extensions: 4.15.0 urllib3: 2.6.3 uvicorn: 0.40.0 wcwidth: 0.3.2 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 widgetsnbextension: 4.0.15 yarl: 1.22.0 }}} " defect closed normal Window Toolkit duplicate all ChimeraX