id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 1995 Crash in Pseudobond destructor papai@… Greg Couch "{{{ The following bug report has been submitted: Platform: Darwin-17.7.0-x86_64-i386-64bit ChimeraX Version: 0.91 (2019-06-01) Description Last time you used ChimeraX it crashed. I tried to show cartoons for a large structure Process: ChimeraX [85308] Path: /Users/USER/*/ChimeraX_Daily-030619.app/Contents/MacOS/ChimeraX Identifier: edu.ucsf.cgl.ChimeraX Version: 0.91.0 (0.91.0.0) Code Type: X86-64 (Native) Parent Process: ??? [1] Responsible: ChimeraX [85308] User ID: 1047 Date/Time: 2019-06-05 14:44:01.922 +0200 OS Version: Mac OS X 10.13.6 (17G7024) Report Version: 12 Anonymous UUID: 6B85E5B3-F91F-35AD-E3C0-B9736BF666FC Time Awake Since Boot: 790000 seconds System Integrity Protection: enabled Crashed Thread: 9 Chrome_IOThread Exception Type: EXC_BAD_ACCESS (SIGSEGV) Exception Codes: EXC_I386_GPFLT Exception Note: EXC_CORPSE_NOTIFY Thread 0:: CrBrowserMain Dispatch queue: com.apple.main-thread 0 libsystem_platform.dylib 0x00007fff55aca4c9 _platform_memmove$VARIANT$Nehalem + 201 1 libatomstruct.dylib 0x0000000118eac62c atomstruct::Pseudobond::~Pseudobond() + 156 2 libatomstruct.dylib 0x0000000118eacbae atomstruct::Pseudobond::~Pseudobond() + 14 3 libatomstruct.dylib 0x0000000118ea0bf2 atomstruct::PBGroup::_check_destroyed_atoms(std::__1::set, std::__1::allocator >&, std::__1::set, std::__1::allocator > const&) + 322 4 libatomstruct.dylib 0x0000000118ea0e85 atomstruct::StructurePBGroup::check_destroyed_atoms(std::__1::set, std::__1::allocator > const&) + 53 5 libatomstruct.dylib 0x0000000118ea9060 atomstruct::Proxy_PBGroup::check_destroyed_atoms(std::__1::set, std::__1::allocator > const&) + 32 6 libatomstruct.dylib 0x0000000118e65fa8 atomstruct::DestructionCoordinator::finalizing_destruction(void*) + 760 7 libatomstruct.dylib 0x0000000118edb1d7 atomstruct::Structure::delete_atoms(std::__1::vector > const&) + 503 8 libmolc.dylib 0x0000000118da3008 atom_delete + 424 9 _ctypes.cpython-37m-darwin.so 0x000000010b011ebf ffi_call_unix64 + 79 10 _ctypes.cpython-37m-darwin.so 0x000000010b01271a ffi_call + 858 11 _ctypes.cpython-37m-darwin.so 0x000000010b00d813 _ctypes_callproc + 787 12 _ctypes.cpython-37m-darwin.so 0x000000010b007583 PyCFuncPtr_call + 1043 13 org.python.python 0x00000001004f575f _PyObject_FastCallKeywords + 559 14 org.python.python 0x00000001005bf26a call_function + 714 15 org.python.python 0x00000001005b796b _PyEval_EvalFrameDefault + 5707 16 org.python.python 0x00000001004f5df3 function_code_fastcall + 195 17 org.python.python 0x00000001005bf271 call_function + 721 18 org.python.python 0x00000001005b78c0 _PyEval_EvalFrameDefault + 5536 19 org.python.python 0x00000001004f5df3 function_code_fastcall + 195 20 org.python.python 0x00000001005bf271 call_function + 721 21 org.python.python 0x00000001005b796b _PyEval_EvalFrameDefault + 5707 22 org.python.python 0x00000001005bfe81 _PyEval_EvalCodeWithName + 2721 23 org.python.python 0x00000001004f53d2 _PyFunction_FastCallDict + 450 24 org.python.python 0x00000001005b7c45 _PyEval_EvalFrameDefault + 6437 25 org.python.python 0x00000001005bfe81 _PyEval_EvalCodeWithName + 2721 26 org.python.python 0x00000001004f58f6 _PyFunction_FastCallKeywords + 230 27 org.python.python 0x00000001005bf271 call_function + 721 28 org.python.python 0x00000001005b78c0 _PyEval_EvalFrameDefault + 5536 29 org.python.python 0x00000001005bfe81 _PyEval_EvalCodeWithName + 2721 30 org.python.python 0x00000001004f53d2 _PyFunction_FastCallDict + 450 31 org.python.python 0x00000001004f6886 _PyObject_Call_Prepend + 150 32 org.python.python 0x00000001004f5a58 PyObject_Call + 136 33 QtCore.so 0x000000010e09c828 PyQtSlot::call(_object*, _object*) const + 40 34 QtCore.so 0x000000010e09c727 PyQtSlot::invoke(void**, _object*, void*, bool) const + 391 35 QtCore.so 0x000000010e09d268 PyQtSlotProxy::unislot(void**) + 88 36 QtCore.so 0x000000010e09d1da PyQtSlotProxy::qt_metacall(QMetaObject::Call, int, void**) + 58 37 QtCore 0x000000010dc043d6 QMetaObject::activate(QObject*, int, int, void**) + 2230 38 QtCore 0x000000010dc046aa QMetaObject::activate(QObject*, int, int, void**) + 2954 39 QtWidgets 0x000000010d0a712e QWidgetLineControl::processKeyEvent(QKeyEvent*) + 334 40 QtWidgets 0x000000010d09dd72 QLineEdit::keyPressEvent(QKeyEvent*) + 34 41 QtWidgets 0x000000010cf8acfb QWidget::event(QEvent*) + 587 42 QtWidgets 0x000000010d09d187 QLineEdit::event(QEvent*) + 599 43 QtWidgets 0x000000010d0651f6 QComboBox::keyPressEvent(QKeyEvent*) + 838 44 QtWidgets.so 0x000000010cc038f9 meth_QComboBox_keyPressEvent(_object*, _object*) + 137 45 org.python.python 0x00000001004f63ab _PyMethodDef_RawFastCallKeywords + 251 46 org.python.python 0x00000001004f593c _PyCFunction_FastCallKeywords + 44 47 org.python.python 0x00000001005bf209 call_function + 617 48 org.python.python 0x00000001005b78da _PyEval_EvalFrameDefault + 5562 49 org.python.python 0x00000001005bfe81 _PyEval_EvalCodeWithName + 2721 50 org.python.python 0x00000001004f53d2 _PyFunction_FastCallDict + 450 51 org.python.python 0x00000001004f6886 _PyObject_Call_Prepend + 150 52 org.python.python 0x00000001004f5a58 PyObject_Call + 136 53 sip.so 0x000000010df6c34a call_method + 76 54 sip.so 0x000000010df68284 sip_api_call_procedure_method + 152 55 QtWidgets.so 0x000000010cb086d7 sipQComboBox::keyPressEvent(QKeyEvent*) + 103 56 QtWidgets 0x000000010cf8acfb QWidget::event(QEvent*) + 587 57 QtWidgets 0x000000010d064b25 QComboBox::event(QEvent*) + 373 58 QtWidgets.so 0x000000010cb07be0 sipQComboBox::event(QEvent*) + 192 59 QtWidgets 0x000000010cf50b82 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 306 60 QtWidgets 0x000000010cf51feb QApplication::notify(QObject*, QEvent*) + 715 61 QtWidgets.so 0x000000010cb22f8a sipQApplication::notify(QObject*, QEvent*) + 234 62 QtCore 0x000000010dbd3a7f QCoreApplication::notifyInternal2(QObject*, QEvent*) + 159 63 QtWidgets 0x000000010cfa9c96 0x10cf3f000 + 437398 64 QtWidgets 0x000000010cf50b82 QApplicationPrivate::notify_helper(QObject*, QEvent*) + 306 65 QtWidgets 0x000000010cf51e9f QApplication::notify(QObject*, QEvent*) + 383 66 QtWidgets.so 0x000000010cb22f8a sipQApplication::notify(QObject*, QEvent*) + 234 67 QtCore 0x000000010dbd3a7f QCoreApplication::notifyInternal2(QObject*, QEvent*) + 159 68 QtGui 0x000000010d51cc35 QGuiApplicationPrivate::processKeyEvent(QWindowSystemInterfacePrivate::KeyEvent*) + 165 69 QtGui 0x000000010d50228b QWindowSystemInterface::sendWindowSystemEvents(QFlags) + 155 70 QtGui 0x000000010d4fe060 QWindowSystemInterface::flushWindowSystemEvents(QFlags) + 576 71 libqcocoa.dylib 0x00000001162747db 0x116253000 + 137179 72 libqcocoa.dylib 0x00000001162749a8 0x116253000 + 137640 73 com.apple.AppKit 0x00007fff2b6b943d -[NSWindow(NSEventRouting) _reallySendEvent:isDelayedEvent:] + 5040 74 com.apple.AppKit 0x00007fff2b6b7c70 -[NSWindow(NSEventRouting) sendEvent:] + 497 75 libqcocoa.dylib 0x0000000116262377 0x116253000 + 62327 76 libqcocoa.dylib 0x0000000116261c34 0x116253000 + 60468 77 com.apple.AppKit 0x00007fff2b519236 -[NSApplication(NSEvent) sendEvent:] + 2462 78 libqcocoa.dylib 0x000000011627dd5a 0x116253000 + 175450 79 com.apple.AppKit 0x00007fff2ad798b5 -[NSApplication run] + 812 80 libqcocoa.dylib 0x000000011627a53d 0x116253000 + 161085 81 QtCore 0x000000010dbcf742 QEventLoop::exec(QFlags) + 418 82 QtCore 0x000000010dbd4172 QCoreApplication::exec() + 402 83 QtWidgets.so 0x000000010cc10dc2 meth_QApplication_exec_(_object*, _object*) + 82 84 org.python.python 0x00000001004f63ab _PyMethodDef_RawFastCallKeywords + 251 85 org.python.python 0x00000001004f593c _PyCFunction_FastCallKeywords + 44 86 org.python.python 0x00000001005bf209 call_function + 617 87 org.python.python 0x00000001005b78da _PyEval_EvalFrameDefault + 5562 88 org.python.python 0x00000001004f5df3 function_code_fastcall + 195 89 org.python.python 0x00000001005bf271 call_function + 721 90 org.python.python 0x00000001005b78da _PyEval_EvalFrameDefault + 5562 91 org.python.python 0x00000001005bfe81 _PyEval_EvalCodeWithName + 2721 92 org.python.python 0x00000001004f58f6 _PyFunction_FastCallKeywords + 230 93 org.python.python 0x00000001005bf271 call_function + 721 94 org.python.python 0x00000001005b796b _PyEval_EvalFrameDefault + 5707 95 org.python.python 0x00000001005bfe81 _PyEval_EvalCodeWithName + 2721 96 org.python.python 0x00000001005b6280 PyEval_EvalCode + 48 97 org.python.python 0x00000001005b39c3 builtin_exec + 563 98 org.python.python 0x00000001004f655e _PyMethodDef_RawFastCallKeywords + 686 99 org.python.python 0x00000001004f593c _PyCFunction_FastCallKeywords + 44 100 org.python.python 0x00000001005bf209 call_function + 617 101 org.python.python 0x00000001005b796b _PyEval_EvalFrameDefault + 5707 102 org.python.python 0x00000001005bfe81 _PyEval_EvalCodeWithName + 2721 103 org.python.python 0x00000001004f58f6 _PyFunction_FastCallKeywords + 230 104 org.python.python 0x00000001005bf271 call_function + 721 105 org.python.python 0x00000001005b796b _PyEval_EvalFrameDefault + 5707 106 org.python.python 0x00000001005bfe81 _PyEval_EvalCodeWithName + 2721 107 org.python.python 0x00000001004f53d2 _PyFunction_FastCallDict + 450 108 org.python.python 0x00000001006144c3 pymain_run_module + 147 109 org.python.python 0x00000001006132d6 pymain_main + 4262 110 org.python.python 0x0000000100612223 Py_Main + 51 111 edu.ucsf.cgl.ChimeraX 0x00000001004c9dcb main + 587 112 libdyld.dylib 0x00007fff557bc015 start + 1 Thread 1:: com.apple.NSEventThread 0 libsystem_kernel.dylib 0x00007fff5590320a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff55902724 mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff2d7f5845 __CFRunLoopServiceMachPort + 341 3 com.apple.CoreFoundation 0x00007fff2d7f4b97 __CFRunLoopRun + 1783 4 com.apple.CoreFoundation 0x00007fff2d7f4207 CFRunLoopRunSpecific + 487 5 com.apple.AppKit 0x00007fff2aec1fc4 _NSEventThread + 184 6 libsystem_pthread.dylib 0x00007fff55ad4661 _pthread_body + 340 7 libsystem_pthread.dylib 0x00007fff55ad450d _pthread_start + 377 8 libsystem_pthread.dylib 0x00007fff55ad3bf9 thread_start + 13 Thread 2:: NetworkConfigWatcher 0 libsystem_kernel.dylib 0x00007fff5590e09a poll + 10 1 QtCore 0x000000010dc26b40 qt_safe_poll(pollfd*, unsigned int, timespec const*) + 544 2 QtCore 0x000000010dc281b9 QEventDispatcherUNIX::processEvents(QFlags) + 857 3 QtCore 0x000000010dbcf742 QEventLoop::exec(QFlags) + 418 4 QtWebEngineCore 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libsystem_pthread.dylib 0x00007fff55ad4661 _pthread_body + 340 9 libsystem_pthread.dylib 0x00007fff55ad450d _pthread_start + 377 10 libsystem_pthread.dylib 0x00007fff55ad3bf9 thread_start + 13 Thread 4:: Chrome_DBThread 0 libsystem_kernel.dylib 0x00007fff5590320a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff55902724 mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff2d7f5845 __CFRunLoopServiceMachPort + 341 3 com.apple.CoreFoundation 0x00007fff2d7f4b97 __CFRunLoopRun + 1783 4 com.apple.CoreFoundation 0x00007fff2d7f4207 CFRunLoopRunSpecific + 487 5 QtWebEngineCore 0x000000010fe0a90f 0x10f1ea000 + 12716303 6 QtWebEngineCore 0x000000010fe0a2a4 0x10f1ea000 + 12714660 7 QtWebEngineCore 0x000000010fe0710e 0x10f1ea000 + 12701966 8 QtWebEngineCore 0x000000010fe2b531 0x10f1ea000 + 12850481 9 QtWebEngineCore 0x000000010f4d7958 0x10f1ea000 + 3070296 10 QtWebEngineCore 0x000000010f4d7d1f 0x10f1ea000 + 3071263 11 QtWebEngineCore 0x000000010fe5f36b 0x10f1ea000 + 13063019 12 QtWebEngineCore 0x000000010fe58667 0x10f1ea000 + 13035111 13 libsystem_pthread.dylib 0x00007fff55ad4661 _pthread_body + 340 14 libsystem_pthread.dylib 0x00007fff55ad450d _pthread_start + 377 15 libsystem_pthread.dylib 0x00007fff55ad3bf9 thread_start + 13 Thread 5:: Chrome_FileThread 0 libsystem_kernel.dylib 0x00007fff5590dbea kevent + 10 1 QtWebEngineCore 0x0000000110318469 0x10f1ea000 + 18015337 2 QtWebEngineCore 0x000000011031575d 0x10f1ea000 + 18003805 3 QtWebEngineCore 0x000000010fe0999f 0x10f1ea000 + 12712351 4 QtWebEngineCore 0x000000010fe0710e 0x10f1ea000 + 12701966 5 QtWebEngineCore 0x000000010fe2b531 0x10f1ea000 + 12850481 6 QtWebEngineCore 0x000000010f4d79d8 0x10f1ea000 + 3070424 7 QtWebEngineCore 0x000000010f4d7d2f 0x10f1ea000 + 3071279 8 QtWebEngineCore 0x000000010fe5f36b 0x10f1ea000 + 13063019 9 QtWebEngineCore 0x000000010fe58667 0x10f1ea000 + 13035111 10 libsystem_pthread.dylib 0x00007fff55ad4661 _pthread_body + 340 11 libsystem_pthread.dylib 0x00007fff55ad450d _pthread_start + 377 12 libsystem_pthread.dylib 0x00007fff55ad3bf9 thread_start + 13 Thread 6:: Chrome_FileUserBlockingThread 0 libsystem_kernel.dylib 0x00007fff5590320a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff55902724 mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff2d7f5845 __CFRunLoopServiceMachPort + 341 3 com.apple.CoreFoundation 0x00007fff2d7f4b97 __CFRunLoopRun + 1783 4 com.apple.CoreFoundation 0x00007fff2d7f4207 CFRunLoopRunSpecific + 487 5 QtWebEngineCore 0x000000010fe0a90f 0x10f1ea000 + 12716303 6 QtWebEngineCore 0x000000010fe0a2a4 0x10f1ea000 + 12714660 7 QtWebEngineCore 0x000000010fe0710e 0x10f1ea000 + 12701966 8 QtWebEngineCore 0x000000010fe2b531 0x10f1ea000 + 12850481 9 QtWebEngineCore 0x000000010f4d7a58 0x10f1ea000 + 3070552 10 QtWebEngineCore 0x000000010f4d7d3f 0x10f1ea000 + 3071295 11 QtWebEngineCore 0x000000010fe5f36b 0x10f1ea000 + 13063019 12 QtWebEngineCore 0x000000010fe58667 0x10f1ea000 + 13035111 13 libsystem_pthread.dylib 0x00007fff55ad4661 _pthread_body + 340 14 libsystem_pthread.dylib 0x00007fff55ad450d _pthread_start + 377 15 libsystem_pthread.dylib 0x00007fff55ad3bf9 thread_start + 13 Thread 7:: Chrome_ProcessLauncherThread 0 libsystem_kernel.dylib 0x00007fff5590320a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff55902724 mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff2d7f5845 __CFRunLoopServiceMachPort + 341 3 com.apple.CoreFoundation 0x00007fff2d7f4b97 __CFRunLoopRun + 1783 4 com.apple.CoreFoundation 0x00007fff2d7f4207 CFRunLoopRunSpecific + 487 5 QtWebEngineCore 0x000000010fe0a90f 0x10f1ea000 + 12716303 6 QtWebEngineCore 0x000000010fe0a2a4 0x10f1ea000 + 12714660 7 QtWebEngineCore 0x000000010fe0710e 0x10f1ea000 + 12701966 8 QtWebEngineCore 0x000000010fe2b531 0x10f1ea000 + 12850481 9 QtWebEngineCore 0x000000010f4d7ad8 0x10f1ea000 + 3070680 10 QtWebEngineCore 0x000000010f4d7d4c 0x10f1ea000 + 3071308 11 QtWebEngineCore 0x000000010fe5f36b 0x10f1ea000 + 13063019 12 QtWebEngineCore 0x000000010fe58667 0x10f1ea000 + 13035111 13 libsystem_pthread.dylib 0x00007fff55ad4661 _pthread_body + 340 14 libsystem_pthread.dylib 0x00007fff55ad450d _pthread_start + 377 15 libsystem_pthread.dylib 0x00007fff55ad3bf9 thread_start + 13 Thread 8:: Chrome_CacheThread 0 libsystem_kernel.dylib 0x00007fff5590320a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff55902724 mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff2d7f5845 __CFRunLoopServiceMachPort + 341 3 com.apple.CoreFoundation 0x00007fff2d7f4b97 __CFRunLoopRun + 1783 4 com.apple.CoreFoundation 0x00007fff2d7f4207 CFRunLoopRunSpecific + 487 5 QtWebEngineCore 0x000000010fe0a90f 0x10f1ea000 + 12716303 6 QtWebEngineCore 0x000000010fe0a2a4 0x10f1ea000 + 12714660 7 QtWebEngineCore 0x000000010fe0710e 0x10f1ea000 + 12701966 8 QtWebEngineCore 0x000000010fe2b531 0x10f1ea000 + 12850481 9 QtWebEngineCore 0x000000010f4d7b58 0x10f1ea000 + 3070808 10 QtWebEngineCore 0x000000010f4d7d59 0x10f1ea000 + 3071321 11 QtWebEngineCore 0x000000010fe5f36b 0x10f1ea000 + 13063019 12 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BrowserBlockingWorker1/73475 0 libsystem_kernel.dylib 0x00007fff5590ca16 __psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff55ad5589 _pthread_cond_wait + 732 2 QtWebEngineCore 0x000000010fe59c1f 0x10f1ea000 + 13040671 3 QtWebEngineCore 0x000000010fe592e6 0x10f1ea000 + 13038310 4 QtWebEngineCore 0x000000010fe5d18d 0x10f1ea000 + 13054349 5 QtWebEngineCore 0x000000010fe58667 0x10f1ea000 + 13035111 6 libsystem_pthread.dylib 0x00007fff55ad4661 _pthread_body + 340 7 libsystem_pthread.dylib 0x00007fff55ad450d _pthread_start + 377 8 libsystem_pthread.dylib 0x00007fff55ad3bf9 thread_start + 13 Thread 11:: IndexedDB 0 libsystem_kernel.dylib 0x00007fff5590320a mach_msg_trap + 10 1 libsystem_kernel.dylib 0x00007fff55902724 mach_msg + 60 2 com.apple.CoreFoundation 0x00007fff2d7f5845 __CFRunLoopServiceMachPort + 341 3 com.apple.CoreFoundation 0x00007fff2d7f4b97 __CFRunLoopRun + 1783 4 com.apple.CoreFoundation 0x00007fff2d7f4207 CFRunLoopRunSpecific + 487 5 QtWebEngineCore 0x000000010fe0a90f 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0x7fff5445fffb libicucore.A.dylib (59181.0.1) /usr/lib/libicucore.A.dylib 0x7fff544ac000 - 0x7fff544adfff liblangid.dylib (128) /usr/lib/liblangid.dylib 0x7fff544ae000 - 0x7fff544c7ffb liblzma.5.dylib (10) /usr/lib/liblzma.5.dylib 0x7fff544c8000 - 0x7fff544deff7 libmarisa.dylib (9) /usr/lib/libmarisa.dylib 0x7fff544df000 - 0x7fff5458efff libmecab.1.0.0.dylib (779.7.6) /usr/lib/libmecab.1.0.0.dylib 0x7fff5458f000 - 0x7fff547b7ff7 libmecabra.dylib (779.7.6) /usr/lib/libmecabra.dylib 0x7fff5498f000 - 0x7fff54b0afff libnetwork.dylib (1229.70.2) /usr/lib/libnetwork.dylib 0x7fff54b91000 - 0x7fff54f823b7 libobjc.A.dylib (723) /usr/lib/libobjc.A.dylib 0x7fff54f83000 - 0x7fff54f84fff libodfde.dylib (24.50.1) /usr/lib/libodfde.dylib 0x7fff54f95000 - 0x7fff54f99fff libpam.2.dylib (22) /usr/lib/libpam.2.dylib 0x7fff54f9c000 - 0x7fff54fd0fff libpcap.A.dylib (79.20.1) /usr/lib/libpcap.A.dylib 0x7fff5504f000 - 0x7fff5506bffb libresolv.9.dylib (65) /usr/lib/libresolv.9.dylib 0x7fff5506d000 - 0x7fff550a6ff3 libsandbox.1.dylib (765.70.1) /usr/lib/libsandbox.1.dylib 0x7fff550a7000 - 0x7fff550b9fff libsasl2.2.dylib (211) /usr/lib/libsasl2.2.dylib 0x7fff550ba000 - 0x7fff550bbff3 libspindump.dylib (252) /usr/lib/libspindump.dylib 0x7fff550bc000 - 0x7fff55249ff7 libsqlite3.dylib (274.8.1) /usr/lib/libsqlite3.dylib 0x7fff552a5000 - 0x7fff552f8ffb libssl.35.dylib (22.50.3) /usr/lib/libssl.35.dylib 0x7fff553d0000 - 0x7fff55405fff libtidy.A.dylib (15.18.1) /usr/lib/libtidy.A.dylib 0x7fff5541d000 - 0x7fff5547dff3 libusrtcp.dylib (1229.70.2) /usr/lib/libusrtcp.dylib 0x7fff5547e000 - 0x7fff55481ffb libutil.dylib (51.20.1) /usr/lib/libutil.dylib 0x7fff55482000 - 0x7fff5548fff3 libxar.1.dylib (417.1) /usr/lib/libxar.1.dylib 0x7fff55493000 - 0x7fff5557afff libxml2.2.dylib (31.13) /usr/lib/libxml2.2.dylib 0x7fff5557b000 - 0x7fff555a3fff libxslt.1.dylib (15.12) /usr/lib/libxslt.1.dylib 0x7fff555a4000 - 0x7fff555b6ffb libz.1.dylib (70) /usr/lib/libz.1.dylib 0x7fff55652000 - 0x7fff55656ff7 libcache.dylib (80) /usr/lib/system/libcache.dylib 0x7fff55657000 - 0x7fff55661ff3 libcommonCrypto.dylib (60118.50.1) /usr/lib/system/libcommonCrypto.dylib 0x7fff55662000 - 0x7fff55669fff libcompiler_rt.dylib (62) /usr/lib/system/libcompiler_rt.dylib 0x7fff5566a000 - 0x7fff55673ffb libcopyfile.dylib (146.50.5) /usr/lib/system/libcopyfile.dylib 0x7fff55674000 - 0x7fff556f9ffb libcorecrypto.dylib (562.70.3) /usr/lib/system/libcorecrypto.dylib 0x7fff55781000 - 0x7fff557baff7 libdispatch.dylib (913.60.3) /usr/lib/system/libdispatch.dylib 0x7fff557bb000 - 0x7fff557d8ff7 libdyld.dylib (551.5) /usr/lib/system/libdyld.dylib 0x7fff557d9000 - 0x7fff557d9ffb libkeymgr.dylib (28) /usr/lib/system/libkeymgr.dylib 0x7fff557da000 - 0x7fff557e6ff3 libkxld.dylib (4570.71.45) /usr/lib/system/libkxld.dylib 0x7fff557e7000 - 0x7fff557e7ff7 liblaunch.dylib (1205.70.12) /usr/lib/system/liblaunch.dylib 0x7fff557e8000 - 0x7fff557ecffb libmacho.dylib (906) /usr/lib/system/libmacho.dylib 0x7fff557ed000 - 0x7fff557efff3 libquarantine.dylib (86) /usr/lib/system/libquarantine.dylib 0x7fff557f0000 - 0x7fff557f1ff3 libremovefile.dylib (45) /usr/lib/system/libremovefile.dylib 0x7fff557f2000 - 0x7fff55809fff libsystem_asl.dylib (356.70.1) /usr/lib/system/libsystem_asl.dylib 0x7fff5580a000 - 0x7fff5580afff libsystem_blocks.dylib (67) /usr/lib/system/libsystem_blocks.dylib 0x7fff5580b000 - 0x7fff55894ff7 libsystem_c.dylib (1244.50.9) /usr/lib/system/libsystem_c.dylib 0x7fff55895000 - 0x7fff55898ffb libsystem_configuration.dylib (963.50.9) /usr/lib/system/libsystem_configuration.dylib 0x7fff55899000 - 0x7fff5589cffb libsystem_coreservices.dylib (51) /usr/lib/system/libsystem_coreservices.dylib 0x7fff5589d000 - 0x7fff5589efff libsystem_darwin.dylib (1244.50.9) /usr/lib/system/libsystem_darwin.dylib 0x7fff5589f000 - 0x7fff558a5ff7 libsystem_dnssd.dylib (878.70.3) /usr/lib/system/libsystem_dnssd.dylib 0x7fff558a6000 - 0x7fff558efff7 libsystem_info.dylib (517.30.1) /usr/lib/system/libsystem_info.dylib 0x7fff558f0000 - 0x7fff55916ff7 libsystem_kernel.dylib (4570.71.45) /usr/lib/system/libsystem_kernel.dylib 0x7fff55917000 - 0x7fff55962fcb libsystem_m.dylib (3147.50.1) /usr/lib/system/libsystem_m.dylib 0x7fff55963000 - 0x7fff55982ff7 libsystem_malloc.dylib (140.50.7) /usr/lib/system/libsystem_malloc.dylib 0x7fff55983000 - 0x7fff55ab3ff7 libsystem_network.dylib (1229.70.2) /usr/lib/system/libsystem_network.dylib 0x7fff55ab4000 - 0x7fff55abeffb libsystem_networkextension.dylib (767.70.2) /usr/lib/system/libsystem_networkextension.dylib 0x7fff55abf000 - 0x7fff55ac8ff3 libsystem_notify.dylib (172) /usr/lib/system/libsystem_notify.dylib 0x7fff55ac9000 - 0x7fff55ad0ff7 libsystem_platform.dylib (161.50.1) /usr/lib/system/libsystem_platform.dylib 0x7fff55ad1000 - 0x7fff55adcfff libsystem_pthread.dylib (301.50.1) /usr/lib/system/libsystem_pthread.dylib 0x7fff55add000 - 0x7fff55ae0fff libsystem_sandbox.dylib (765.70.1) /usr/lib/system/libsystem_sandbox.dylib 0x7fff55ae1000 - 0x7fff55ae2ff3 libsystem_secinit.dylib (30) /usr/lib/system/libsystem_secinit.dylib 0x7fff55ae3000 - 0x7fff55aeaff7 libsystem_symptoms.dylib (820.60.3) /usr/lib/system/libsystem_symptoms.dylib 0x7fff55aeb000 - 0x7fff55afefff libsystem_trace.dylib (829.70.1) /usr/lib/system/libsystem_trace.dylib 0x7fff55b00000 - 0x7fff55b05ff7 libunwind.dylib (35.3) /usr/lib/system/libunwind.dylib 0x7fff55b06000 - 0x7fff55b33ff7 libxpc.dylib (1205.70.12) /usr/lib/system/libxpc.dylib External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 302 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 501392 thread_create: 0 thread_set_state: 0 VM Region Summary: ReadOnly portion of Libraries: Total=751.5M resident=0K(0%) swapped_out_or_unallocated=751.5M(100%) Writable regions: Total=2.9G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=2.9G(100%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 640K 6 Activity Tracing 256K 2 CG backing stores 19.1M 16 CG image 344K 50 CoreAnimation 992K 103 CoreGraphics 8K 2 CoreImage 216K 51 CoreUI image data 3552K 46 CoreUI image file 232K 7 Foundation 28K 3 Image IO 16K 2 Kernel Alloc Once 8K 2 MALLOC 2.3G 475 MALLOC guard page 48K 12 MALLOC_LARGE (reserved) 10.0M 4 reserved VM address space (unallocated) Memory Tag 242 12K 2 Memory Tag 251 92K 5 OpenGL GLSL 512K 7 STACK GUARD 56.1M 30 Stack 149.7M 32 VM_ALLOCATE 300.3M 540 VM_ALLOCATE (reserved) 128.0M 5 reserved VM address space (unallocated) __DATA 51.2M 561 __FONT_DATA 4K 2 __GLSLBUILTINS 2588K 2 __LINKEDIT 218.8M 173 __TEXT 532.7M 523 __UNICODE 560K 2 mapped file 130.5M 140 shared memory 1784K 20 =========== ======= ======= TOTAL 3.9G 2795 TOTAL, minus reserved VM space 3.7G 2795 Log: UCSF ChimeraX version: 0.91 (2019-06-01) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 ATI-1.68.22 OpenGL renderer: AMD Radeon HD 6770M OpenGL Engine OpenGL vendor: ATI Technologies Inc. }}} " defect closed normal Core duplicate all ChimeraX