id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 19914 Crash on Mac waking from sleep in OpenGL swap_buffers on status line expose event chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-26.3-arm64-arm-64bit ChimeraX Version: 1.11.1 (2026-01-23 05:51:34 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Bus error Current thread 0x00000001ed32f080 (most recent call first): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 248 in swap_buffers File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 561 in swap_buffers File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/statusbar.py"", line 166 in status File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/statusbar.py"", line 98 in _expose_event File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 414 in event_loop File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1064 in init File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1229 in File """", line 88 in _run_code File """", line 198 in _run_module_as_main Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, 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""fa4beac8-9a1e-3071-b669-bd2794e9fe3b"", ""path"" : ""\/System\/Library\/Frameworks\/Carbon.framework\/Versions\/A\/Frameworks\/HIToolbox.framework\/Versions\/A\/HIToolbox"", ""name"" : ""HIToolbox"" }, { ""source"" : ""P"", ""arch"" : ""arm64e"", ""base"" : 6455955456, ""size"" : 653076, ""uuid"" : ""bc4db5f4-1c64-3706-8006-73b78c3e1f1a"", ""path"" : ""\/usr\/lib\/dyld"", ""name"" : ""dyld"" }, { ""size"" : 0, ""source"" : ""A"", ""base"" : 0, ""uuid"" : ""00000000-0000-0000-0000-000000000000"" } ], ""sharedCache"" : { ""base"" : 6454870016, ""size"" : 5818417152, ""uuid"" : ""25ae5a2a-fe2a-3998-8d4e-f3c5c6e6ceb6"" }, ""vmSummary"" : ""ReadOnly portion of Libraries: Total=2.1G resident=0K(0%) swapped_out_or_unallocated=2.1G(100%) Writable regions: Total=1.5G written=103.7M(7%) resident=1590K(0%) swapped_out=102.2M(7%) unallocated=1.4G(93%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= .note.gnu.proper 320 1 Accelerate framework 256K 2 Activity Tracing 256K 1 AttributeGraph Data 1024K 1 CG image 176K 8 ColorSync 160K 10 CoreAnimation 1312K 73 CoreGraphics 32K 2 CoreUI image data 4912K 42 Foundation 32K 2 Kernel Alloc Once 32K 1 MALLOC 859.3M 187 MALLOC guard page 3664K 4 Mach message 64K 3 OpenGL GLSL 256K 3 PROTECTED_MEMORY 16K 1 STACK GUARD 576K 36 Stack 206.7M 37 Stack Guard 56.0M 1 VM_ALLOCATE 356.0M 273 VM_ALLOCATE (reserved) 128.0M 2 reserved VM address space (unallocated) __AUTH 5948K 654 __AUTH_CONST 90.4M 1040 __CTF 824 1 __DATA 42.9M 1135 __DATA_CONST 59.7M 1183 __DATA_DIRTY 8492K 898 __FONT_DATA 2352 1 __GLSLBUILTINS 5176K 1 __INFO_FILTER 8 1 __LINKEDIT 619.6M 139 __OBJC_RO 78.4M 1 __OBJC_RW 2571K 1 __TEXT 1.5G 1196 __TEXT (graphics) 1024K 9 __TPRO_CONST 128K 2 dyld private memory 1584K 15 mapped file 302.2M 59 page table in kernel 1590K 1 shared memory 3792K 24 =========== ======= ======= TOTAL 4.3G 7051 TOTAL, minus reserved VM space 4.2G 7051 "", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""logWritingSignature"" : ""fbc975933b2f3b0f8dfe0e9d179898076aaa97eb"", ""bug_type"" : ""309"", ""roots_installed"" : 0, ""trmStatus"" : 1, ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""60da5e84ab0ca017dace9abf"", ""factorPackIds"" : [ ], ""deploymentId"" : 240000008 }, { ""rolloutId"" : ""695fd05d8ca5554688521e5e"", ""factorPackIds"" : [ ""695fd08781fcd20ded79c1d3"", ""695fd0d28ca5554688521e5f"", ""695fd09c8774dc09015a80e9"", ""695fd0b18774dc09015a80ea"" ], ""deploymentId"" : 3 } ], ""experiments"" : [ ] } } ===== Log before crash start ===== UCSF ChimeraX version: 1.11.1 (2026-01-23) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/juandiegosuarezgamboa/Documents/Uniandes/Semestres/Octavo > semstre/Bioquimica de proteinas/Parcial_2.cxs"" format session > view name session-start opened ChimeraX session > hide #!1 models > delete /b,c,d > select > ::name=""FAD""::name=""FMN""::name=""HOH""::name=""NDP""::name=""SF4""::name=""URF"" 2489 atoms, 339 bonds, 2214 residues, 2 models selected > preset ""initial styles"" ""original look"" Using preset: Initial Styles / Original Look Preset implemented in Python; no expansion to individual ChimeraX commands available. > show #!1 models > hide #!2 models > show #!2 models > hide #!1 models > show #!1 models > hide #!1 models > hide #!2 models > show #!1 models > show #!2 models > hide #!1 models > hide #!2 models > show #!2 models > show #!1 models > hide #!1 models > hide #!2 models > show #!1 models > show #!2 models > hide #!1 models > hide #!2 models > open /Users/juandiegosuarezgamboa/Downloads/1H7X.cif 1H7X.cif title: Dihydropyrimidine dehydrogenase (DPD) from pig, ternary complex of a mutant enzyme (C671A), NADPH and 5-fluorouracil [more info...] Chain information for 1H7X.cif #3 --- Chain | Description | UniProt A B C D | DIHYDROPYRIMIDINE DEHYDROGENASE | DPYD_PIG 1-1025 Non-standard residues in 1H7X.cif #3 --- FAD — flavin-adenine dinucleotide FMN — flavin mononucleotide (riboflavin monophosphate) NDP — nadph dihydro-nicotinamide-adenine-dinucleotide phosphate SF4 — iron/sulfur cluster URF — 5-fluorouracil 1H7X.cif mmCIF Assemblies --- 1| author_and_software_defined_assembly 2| author_and_software_defined_assembly > delete /b,c,d > select > ::name=""FAD""::name=""FMN""::name=""HOH""::name=""NDP""::name=""SF4""::name=""URF"" 3714 atoms, 539 bonds, 3274 residues, 3 models selected > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!1 models > show #!1 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!1 models > select ::name=""URF"" 18 atoms, 18 bonds, 2 residues, 2 models selected > select > ::name=""FAD""::name=""FMN""::name=""HOH""::name=""NDP""::name=""SF4""::name=""URF"" 3714 atoms, 539 bonds, 3274 residues, 3 models selected > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!1 models > show #!1 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!1 models > show #!1 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > ui mousemode right select > select clear > select #3/A:1032@O3 1 atom, 1 residue, 1 model selected > select #3/A:1032@PA 1 atom, 1 residue, 1 model selected > hide #!1 models > select ligand 462 atoms, 539 bonds, 22 residues, 3 models selected > select #3/A:1027@S1 1 atom, 1 residue, 1 model selected > select ligand 462 atoms, 539 bonds, 22 residues, 3 models selected Drag select of 4 residues > ui mousemode right translate > select ligand 462 atoms, 539 bonds, 22 residues, 3 models selected > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!3 models > hide #!1 models > show #!1 models > show #!3 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!1 models > select ::name=""URF"" 18 atoms, 18 bonds, 2 residues, 2 models selected > show #!1 models > hide #!1 models > show #!1 models > hide #!3 models > show #!3 models > hide #!1 models > cofr sel > color (#!3 & sel) yellow > color sel & #!3 byhetero > color (#!3 & sel) lime > color sel & #!3 byhetero > combine #3 > rename #3 protein > rename #4 ligand > hide #!3 models > show #!3 models > hide #!4 models > hide #!3 models > show #!3 models > hide #!3 models > show #!4 models > show #!3 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > select clear > hide #!3 models > hide #!4 models > show #!4 models > show #!3 models > hide #!4 models > ui mousemode right select Drag select of 2 atoms, 9 residues, 4 bonds > select clear > ui mousemode right translate Drag select of 4 residues > select #3/A:549@CB 1 atom, 1 residue, 1 model selected > ui mousemode right select > ui mousemode right translate > select #3/A:827 8 atoms, 7 bonds, 1 residue, 1 model selected > select #3/A:827 8 atoms, 7 bonds, 1 residue, 1 model selected > ui mousemode right select > select #3/A:1033@C6 1 atom, 1 residue, 1 model selected > select #3/A:1033@C6 1 atom, 1 residue, 1 model selected > select #3/A:1033@C6 1 atom, 1 residue, 1 model selected > ui mousemode right translate > select up 2 atoms, 1 bond, 1 residue, 1 model selected > select up 9 atoms, 9 bonds, 1 residue, 1 model selected > select ~sel & ##selected 8965 atoms, 8101 bonds, 2075 residues, 1 model selected > delete atoms sel > delete bonds sel > show #!4 models > hide #!4 models > show #!4 models > hide #!3 models > show #!3 models > hide #!3 models > show #!3 models > hide #!4 models > show #!4 models > hide #!4 models > show #!4 models > hide #!3 models > select sel : show #!4 atoms > hide #!4 atoms > undo > show #!4 atoms > hide #!4 cartoons > undo > show #!4 atoms > view sel No objects specified. > show #!3 models > hide #!4 models > show #!4 models > select add #4 8974 atoms, 8110 bonds, 2076 residues, 1 model selected > select sel : style sel & #!3-4 stick Changed 8983 atom styles > style sel & #!3-4 stick Changed 8983 atom styles > undo > style sel & #!3-4 stick Changed 8983 atom styles > view sel > select subtract #1 17957 atoms, 16229 bonds, 4153 residues, 3 models selected > select subtract #2 8983 atoms, 8119 bonds, 2077 residues, 2 models selected > select subtract #3 8974 atoms, 8110 bonds, 2076 residues, 1 model selected > view sel > select clear > view sel No objects specified. > select add #4 8974 atoms, 8110 bonds, 2076 residues, 1 model selected > view sel > hide #!3 models > show #!2 models > hide #!2 models > show #!3 models > select add #3 8983 atoms, 8119 bonds, 2077 residues, 2 models selected > select subtract #4 9 atoms, 9 bonds, 1 residue, 1 model selected > select sel : view sel > style sel & #!3-4 stick Changed 128 atom styles > hbonds sel & #!3-4 reveal true 326 hydrogen bonds found > save /Users/juandiegosuarezgamboa/Desktop/image1.png supersample 3 > select protein 23248 atoms, 23731 bonds, 70 pseudobonds, 3048 residues, 4 models selected > hbonds sel & #!4 reveal true 9191 hydrogen bonds found > view > select clear > save /Users/juandiegosuarezgamboa/Desktop/image2.png supersample 3 > hbonds #!3-4 reveal true 23155 hydrogen bonds found > ~hbonds > show #!3-4 surfaces > save /Users/juandiegosuarezgamboa/Desktop/image3.png supersample 3 > coulombic #!3-4 Using Amber 20 recommended default charges and atom types for standard residues Assigning partial charges to residue URF (net charge +0) with am1-bcc method Running ANTECHAMBER command: /Applications/ChimeraX-1.11.1.app/Contents/bin/amber20/bin/antechamber -ek qm_theory='AM1', -i /var/folders/6f/n00z8p194j51b5fvfl3p_04w0000gn/T/tmp_3_nz8d3/ante.in.mol2 -fi mol2 -o /var/folders/6f/n00z8p194j51b5fvfl3p_04w0000gn/T/tmp_3_nz8d3/ante.out.mol2 -fo mol2 -c bcc -nc 0 -j 5 -s 2 -dr n (URF) `` (URF) `Welcome to antechamber 20.0: molecular input file processor.` (URF) `` (URF) `Info: Finished reading file (/var/folders/6f/n00z8p194j51b5fvfl3p_04w0000gn/T/tmp_3_nz8d3/ante.in.mol2); atoms read (12), bonds read (12).` (URF) `Info: Determining atomic numbers from atomic symbols which are case sensitive.` (URF) `Running: /Applications/ChimeraX-1.11.1.app/Contents/bin/amber20/bin/bondtype -j part -i ANTECHAMBER_BOND_TYPE.AC0 -o ANTECHAMBER_BOND_TYPE.AC -f ac` (URF) `` (URF) `` (URF) `Running: /Applications/ChimeraX-1.11.1.app/Contents/bin/amber20/bin/atomtype -i ANTECHAMBER_AC.AC0 -o ANTECHAMBER_AC.AC -p gaff` (URF) `Info: Total number of electrons: 66; net charge: 0` (URF) `` (URF) `Running: /Applications/ChimeraX-1.11.1.app/Contents/bin/amber20/bin/sqm -O -i sqm.in -o sqm.out` (URF) `` (URF) `Running: /Applications/ChimeraX-1.11.1.app/Contents/bin/amber20/bin/am1bcc -i ANTECHAMBER_AM1BCC_PRE.AC -o ANTECHAMBER_AM1BCC.AC -f ac -p /Applications/ChimeraX-1.11.1.app/Contents/bin/amber20/dat/antechamber/BCCPARM.DAT -s 2 -j 1` (URF) `` (URF) `Running: /Applications/ChimeraX-1.11.1.app/Contents/bin/amber20/bin/atomtype -f ac -p bcc -o ANTECHAMBER_AM1BCC.AC -i ANTECHAMBER_AM1BCC_PRE.AC` (URF) `` Charges for residue URF determined Coulombic values for protein_A SES surface #3.2: minimum, -2.93, mean 0.49, maximum 3.42 Coulombic values for ligand_A SES surface #4.2: minimum, -23.75, mean -3.10, maximum 17.02 To also show corresponding color key, enter the above coulombic command and add key true > hide #!4 models > show #!4 models > hide #!4 models > show #!4 models > hide #!4 models > show #!4 models > save /Users/juandiegosuarezgamboa/Desktop/image4.png supersample 3 > mlp #!3-4 Map values for surface ""ligand_A SES surface"": minimum -29.57, mean -4.891, maximum 24.29 To also show corresponding color key, enter the above mlp command and add key true > save /Users/juandiegosuarezgamboa/Desktop/image5.png supersample 3 Unsupported scale factor (0.000000) detected on Display0 ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.11.1 (2026-01-23) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 90.5 OpenGL renderer: Apple M1 Pro OpenGL vendor: Apple Python: 3.11.9 Locale: en_US.UTF-8 Qt version: PyQt6 6.9.1, Qt 6.9.0 Qt runtime version: 6.9.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro18,3 Model Number: MKGP3LL/A Chip: Apple M1 Pro Total Number of Cores: 8 (6 Performance and 2 Efficiency) Memory: 16 GB System Firmware Version: 13822.81.10 OS Loader Version: 13822.81.10 Software: System Software Overview: System Version: macOS 26.3 (25D125) Kernel Version: Darwin 25.3.0 Time since boot: 1 day, 23 minutes Graphics/Displays: Apple M1 Pro: Chipset Model: Apple M1 Pro Type: GPU Bus: Built-In Total Number of Cores: 14 Vendor: Apple (0x106b) Metal Support: Metal 4 Displays: Color LCD: Display Type: Built-in Liquid Retina XDR Display Resolution: 3024 x 1964 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal HP 524sh: Resolution: 1920 x 1080 (1080p FHD - Full High Definition) UI Looks like: 1920 x 1080 @ 100.00Hz Mirror: Off Online: Yes Rotation: Supported Sidecar Display: Resolution: 2360 x 1640 UI Looks like: 1180 x 820 @ 60.00Hz Framebuffer Depth: 24-Bit Color (ARGB8888) Mirror: Off Connection Type: AirPlay Virtual Device: Yes Installed Packages: aiohappyeyeballs: 2.6.1 aiohttp: 3.13.1 aiosignal: 1.4.0 alabaster: 1.0.0 annotated-types: 0.7.0 anyio: 4.12.1 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.1 attrs: 25.4.0 babel: 2.17.0 beautifulsoup4: 4.13.5 blockdiag: 3.0.0 blosc2: 3.12.2 build: 1.3.0 certifi: 2025.7.14 cftime: 1.6.5 charset-normalizer: 3.4.4 ChimeraX-AddCharge: 1.5.20 ChimeraX-AddH: 2.2.8 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 3.1.1 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Animations: 1.0 ChimeraX-Aniso: 1.3.2 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.61.4 ChimeraX-AtomicLibrary: 14.2.1 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.1 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.6.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3.0 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.11.1 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.4 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.3 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.4 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.7.3 ChimeraX-Label: 1.2 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.2 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.2.2 ChimeraX-MCopy: 1.0 ChimeraX-MCPServer: 0.1.0 ChimeraX-MDcrds: 2.17.2 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-Minimize: 1.3.2 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.22 ChimeraX-ModelPanel: 1.6 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0.1 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.15.2 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.12 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.5 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.4 ChimeraX-ProfileGrids: 1.4.2 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.5 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.3 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.2 ChimeraX-Scenes: 0.3.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.10 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.17.3 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.49.1 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDock: 1.5.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 click: 8.3.1 colorama: 0.4.6 comm: 0.2.3 contourpy: 1.3.3 coverage: 7.13.1 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.1.4 debugpy: 1.8.19 decorator: 5.2.1 docutils: 0.21.2 executing: 2.2.1 filelock: 3.19.1 fonttools: 4.61.1 frozenlist: 1.8.0 funcparserlib: 2.0.0a0 glfw: 2.10.0 grako: 3.16.5 h11: 0.16.0 h5py: 3.15.1 html2text: 2025.4.15 httpcore: 1.0.9 httpx: 0.28.1 httpx-sse: 0.4.3 idna: 3.11 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 1.4.1 iniconfig: 2.3.0 ipykernel: 6.30.1 ipython: 9.5.0 ipython_pygments_lexers: 1.1.1 ipywidgets: 8.1.8 jedi: 0.19.2 Jinja2: 3.1.6 jsonschema: 4.26.0 jsonschema-specifications: 2025.9.1 jupyter_client: 8.6.3 jupyter_core: 5.9.1 jupyterlab_widgets: 3.0.16 kiwisolver: 1.4.9 line_profiler: 5.0.0 lxml: 6.0.2 lz4: 4.3.2 Markdown: 3.8.2 MarkupSafe: 3.0.3 matplotlib: 3.10.7 matplotlib-inline: 0.2.1 mcp: 1.18.0 msgpack: 1.1.1 multidict: 6.7.0 ndindex: 1.10.1 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.14.1 numpy: 1.26.4 OpenMM: 8.2.0 openvr: 1.26.701 packaging: 25.0 ParmEd: 4.2.2 parso: 0.8.5 pep517: 0.13.1 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 11.3.0 pip: 25.2 pkginfo: 1.12.1.2 platformdirs: 4.5.1 pluggy: 1.6.0 prompt_toolkit: 3.0.52 propcache: 0.4.1 psutil: 7.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pybind11: 3.0.1 pycollada: 0.8 pydantic: 2.12.5 pydantic-settings: 2.12.0 pydantic_core: 2.41.5 pydicom: 2.4.4 Pygments: 2.18.0 pynmrstar: 3.3.6 pynrrd: 1.0.0 PyOpenGL: 3.1.10 PyOpenGL-accelerate: 3.1.10 pyopenxr: 1.1.4501 pyparsing: 3.3.2 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.9.1 PyQt6-Qt6: 6.9.2 PyQt6-WebEngine-commercial: 6.9.0 PyQt6-WebEngine-Qt6: 6.9.2 PyQt6_sip: 13.10.2 pytest: 9.0.2 pytest-cov: 7.0.0 python-dateutil: 2.9.0.post0 python-dotenv: 1.2.1 python-multipart: 0.0.21 pyzmq: 27.1.0 qtconsole: 5.7.0 QtPy: 2.4.3 qtshim: 1.2 RandomWords: 0.4.0 referencing: 0.37.0 requests: 2.32.5 roman-numerals: 4.1.0 roman-numerals-py: 4.1.0 rpds-py: 0.30.0 scipy: 1.14.0 setuptools: 80.9.0 sfftk-rw: 0.8.1 six: 1.17.0 snowballstemmer: 3.0.1 sortedcontainers: 2.4.0 soupsieve: 2.8.3 Sphinx: 8.2.3 sphinx-autodoc-typehints: 3.2.0 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 sse-starlette: 3.2.0 stack-data: 0.6.3 starlette: 0.52.1 superqt: 0.7.6 tables: 3.10.2 tcia_utils: 1.5.1 tifffile: 2025.3.13 tinyarray: 1.2.5 tornado: 6.5.4 traitlets: 5.14.3 typing-inspection: 0.4.2 typing_extensions: 4.15.0 urllib3: 2.6.3 uvicorn: 0.40.0 wcwidth: 0.3.2 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 widgetsnbextension: 4.0.15 yarl: 1.22.0 }}} " defect closed normal Window Toolkit duplicate all ChimeraX