id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 19895 Crash in swap_buffers exposing status line during Mac wakeup, macOS 26 chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-26.3-arm64-arm-64bit ChimeraX Version: 1.11.1 (2026-01-23 05:51:34 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Bus error Current thread 0x00000001f45e7080 (most recent call first): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 248 in swap_buffers File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 561 in swap_buffers File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/statusbar.py"", line 166 in status File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/statusbar.py"", line 98 in _expose_event File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 414 in event_loop File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1064 in init File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1229 in File """", line 88 in _run_code File """", line 198 in _run_module_as_main Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, 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}, ""logWritingSignature"" : ""23ff1397cd89a11375dc0d99c6bbcb1c33c0f186"", ""bug_type"" : ""309"", ""roots_installed"" : 0, ""trmStatus"" : 1, ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""6434420a89ec2e0a7a38bf5a"", ""factorPackIds"" : [ ], ""deploymentId"" : 240000011 }, { ""rolloutId"" : ""5fb4245a1bbfe8005e33a1e1"", ""factorPackIds"" : [ ], ""deploymentId"" : 240000021 } ], ""experiments"" : [ ] } } ===== Log before crash start ===== UCSF ChimeraX version: 1.11.1 (2026-01-23) © 2016-2025 Regents of the University of California. All rights reserved. > open ""/Users/baymax/Library/Mobile > Documents/com~apple~CloudDocs/重医/科研/CELF2/2025CELF2/2025发表/Figure1/5 > RRM3.cxs"" Log from Tue Feb 24 16:21:05 2026UCSF ChimeraX version: 1.11.1 (2026-01-23) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/baymax/Library/Mobile > Documents/com~apple~CloudDocs/重医/科研/CELF2/2025CELF2/2025发表/Figure1/5m8i.cif"" 5m8i.cif title: Solution structure of CUG-BP2 RRM3 in complex with 5'-UUUAA-3' RNA [more info...] Chain information for 5m8i.cif --- Chain | Description | UniProt 1.1/A 1.2/A 1.3/A 1.4/A 1.5/A 1.6/A 1.7/A 1.8/A 1.9/A 1.10/A 1.11/A 1.12/A 1.13/A 1.14/A 1.15/A 1.16/A 1.17/A 1.18/A 1.19/A 1.20/A | CUGBP Elav-like family member 2 | CELF2_HUMAN 22-114 1.1/B 1.2/B 1.3/B 1.4/B 1.5/B 1.6/B 1.7/B 1.8/B 1.9/B 1.10/B 1.11/B 1.12/B 1.13/B 1.14/B 1.15/B 1.16/B 1.17/B 1.18/B 1.19/B 1.20/B | RNA (5'-R(*UP*UP*UP*AP*A)-3') | Unsupported scale factor (0.000000) detected on Display0 [Repeated 4 time(s)] > hide #!1 models > show #!1 models > hide #1.2 models > hide #1.3 models > hide #1.4 models > hide #1.5 models > hide #1.6 models > hide #1.7 models > hide #1.9 models > hide #1.8 models > hide #1.10 models > hide #1.11 models > hide #1.12 models > hide #1.13 models > hide #1.14 models > hide #1.15 models > hide #1.16 models > hide #1.17 models > hide #1.18 models > hide #1.19 models > hide #1.20 models > select clear > ui windowfill toggle [Repeated 1 time(s)] > set bgColor white > set bgColor #ffffff00 > set bgColor black > set bgColor transparent > set bgColor white > set bgColor #ffffff00 > select clear > color protein #e6e6e6 > color /A #F5A623 > hide /B cartoons > show /B atoms > style /B stick Changed 3060 atom styles > color /B #FF4D4D > color /B byhetero > surface protein > color surfaces #e6e6e6 Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero', 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', 'fromcartoons', 'fromribbons', or 'random' or a keyword > color protein #e6e6e6 surfaces > transparency protein 50 surfaces > lighting soft > graphics silhouettes true width 2 > redo > transparency protein 50 surfaces Unsupported scale factor (0.000000) detected on Display0 [Repeated 3 time(s)] > save ""/Users/baymax/iCloud/重医/科研/CELF2/2025CELF2/2025发表/Figure1/5 RRM3.cxs"" ——— End of log from Tue Feb 24 16:21:05 2026 ——— > view name session-start opened ChimeraX session > save ""/Users/baymax/iCloud/重医/科研/CELF2/2025CELF2/2025发表/Figure1/5 RRM3.cxs"" > ~show :.A > hide :.A Expected a collection of one of 'atoms', 'bonds', 'cartoons', 'models', 'pbonds', 'pseudobonds', 'ribbons', or 'surfaces' or a keyword > ui windowfill toggle > ui tool show ""Show Sequence Viewer"" > hide protein Unsupported scale factor (0.000000) detected on Display0 > ui tool show ""Show Sequence Viewer"" > sequence chain #1.1/A #1.2/A #1.3/A #1.4/A #1.5/A #1.6/A #1.7/A #1.8/A > #1.9/A #1.10/A #1.11/A #1.12/A #1.13/A #1.14/A #1.15/A #1.16/A #1.17/A > #1.18/A #1.19/A #1.20/A Alignment identifier is 1 > ui tool show ""Show Sequence Viewer"" > sequence chain #1.1/B #1.2/B #1.3/B #1.4/B #1.5/B #1.6/B #1.7/B #1.8/B > #1.9/B #1.10/B #1.11/B #1.12/B #1.13/B #1.14/B #1.15/B #1.16/B #1.17/B > #1.18/B #1.19/B #1.20/B Alignment identifier is 2 > select #1.1/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.2/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.3/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.4/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.5/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.6/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.7/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.8/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.9/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.10/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.11/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.12/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.13/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.14/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.15/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.16/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.17/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.18/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.19/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.20/A:30-34,55-62,69-77,94-95,98-99,101-103 10040 atoms, 10040 bonds, 580 residues, 20 models selected > select #1.1/A:41-53,79-91 #1.2/A:41-53,79-91 #1.3/A:41-53,79-91 > #1.4/A:41-53,79-91 #1.5/A:41-53,79-91 #1.6/A:41-53,79-91 #1.7/A:41-53,79-91 > #1.8/A:41-53,79-91 #1.9/A:41-53,79-91 #1.10/A:41-53,79-91 > #1.11/A:41-53,79-91 #1.12/A:41-53,79-91 #1.13/A:41-53,79-91 > #1.14/A:41-53,79-91 #1.15/A:41-53,79-91 #1.16/A:41-53,79-91 > #1.17/A:41-53,79-91 #1.18/A:41-53,79-91 #1.19/A:41-53,79-91 > #1.20/A:41-53,79-91 7540 atoms, 7580 bonds, 520 residues, 20 models selected > select #1.1/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.2/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.3/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.4/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.5/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.6/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.7/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.8/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.9/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.10/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.11/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.12/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.13/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.14/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.15/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.16/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.17/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.18/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.19/A:30-34,55-62,69-77,94-95,98-99,101-103 > #1.20/A:30-34,55-62,69-77,94-95,98-99,101-103 10040 atoms, 10040 bonds, 580 residues, 20 models selected > select #1.1/A:1 #1.2/A:1 #1.3/A:1 #1.4/A:1 #1.5/A:1 #1.6/A:1 #1.7/A:1 > #1.8/A:1 #1.9/A:1 #1.10/A:1 #1.11/A:1 #1.12/A:1 #1.13/A:1 #1.14/A:1 > #1.15/A:1 #1.16/A:1 #1.17/A:1 #1.18/A:1 #1.19/A:1 #1.20/A:1 380 atoms, 360 bonds, 20 residues, 20 models selected > select #1.1/A:1-2 #1.2/A:1-2 #1.3/A:1-2 #1.4/A:1-2 #1.5/A:1-2 #1.6/A:1-2 > #1.7/A:1-2 #1.8/A:1-2 #1.9/A:1-2 #1.10/A:1-2 #1.11/A:1-2 #1.12/A:1-2 > #1.13/A:1-2 #1.14/A:1-2 #1.15/A:1-2 #1.16/A:1-2 #1.17/A:1-2 #1.18/A:1-2 > #1.19/A:1-2 #1.20/A:1-2 520 atoms, 500 bonds, 40 residues, 20 models selected CUGBP Elav-like Family Member 2 [ID: 1] region 20 chains [1-2] RMSD: 46.520 > select #1.1/A:1 #1.2/A:1 #1.3/A:1 #1.4/A:1 #1.5/A:1 #1.6/A:1 #1.7/A:1 > #1.8/A:1 #1.9/A:1 #1.10/A:1 #1.11/A:1 #1.12/A:1 #1.13/A:1 #1.14/A:1 > #1.15/A:1 #1.16/A:1 #1.17/A:1 #1.18/A:1 #1.19/A:1 #1.20/A:1 380 atoms, 360 bonds, 20 residues, 20 models selected > select #1.1/A:1-29 #1.2/A:1-29 #1.3/A:1-29 #1.4/A:1-29 #1.5/A:1-29 > #1.6/A:1-29 #1.7/A:1-29 #1.8/A:1-29 #1.9/A:1-29 #1.10/A:1-29 #1.11/A:1-29 > #1.12/A:1-29 #1.13/A:1-29 #1.14/A:1-29 #1.15/A:1-29 #1.16/A:1-29 > #1.17/A:1-29 #1.18/A:1-29 #1.19/A:1-29 #1.20/A:1-29 8220 atoms, 8380 bonds, 580 residues, 20 models selected CUGBP Elav-like Family Member 2 [ID: 1] region 20 chains [1-29] RMSD: 25.950 > select #1.1/A:104 #1.2/A:104 #1.3/A:104 #1.4/A:104 #1.5/A:104 #1.6/A:104 > #1.7/A:104 #1.8/A:104 #1.9/A:104 #1.10/A:104 #1.11/A:104 #1.12/A:104 > #1.13/A:104 #1.14/A:104 #1.15/A:104 #1.16/A:104 #1.17/A:104 #1.18/A:104 > #1.19/A:104 #1.20/A:104 380 atoms, 360 bonds, 20 residues, 20 models selected > select #1.1/A:104-114 #1.2/A:104-114 #1.3/A:104-114 #1.4/A:104-114 > #1.5/A:104-114 #1.6/A:104-114 #1.7/A:104-114 #1.8/A:104-114 #1.9/A:104-114 > #1.10/A:104-114 #1.11/A:104-114 #1.12/A:104-114 #1.13/A:104-114 > #1.14/A:104-114 #1.15/A:104-114 #1.16/A:104-114 #1.17/A:104-114 > #1.18/A:104-114 #1.19/A:104-114 #1.20/A:104-114 3900 atoms, 3940 bonds, 220 residues, 20 models selected CUGBP Elav-like Family Member 2 [ID: 1] region 20 chains [104-114] RMSD: 7.028 > select #1.1/A:1-29 #1.2/A:1-29 #1.3/A:1-29 #1.4/A:1-29 #1.5/A:1-29 > #1.6/A:1-29 #1.7/A:1-29 #1.8/A:1-29 #1.9/A:1-29 #1.10/A:1-29 #1.11/A:1-29 > #1.12/A:1-29 #1.13/A:1-29 #1.14/A:1-29 #1.15/A:1-29 #1.16/A:1-29 > #1.17/A:1-29 #1.18/A:1-29 #1.19/A:1-29 #1.20/A:1-29 8220 atoms, 8380 bonds, 580 residues, 20 models selected > delete sel Unsupported scale factor (0.000000) detected on Display0 Desktop color scheme is dark Desktop color scheme is light Unsupported scale factor (0.000000) detected on Display0 ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.11.1 (2026-01-23) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 90.5 OpenGL renderer: Apple M2 OpenGL vendor: Apple Python: 3.11.9 Locale: en_US.UTF-8 Qt version: PyQt6 6.9.1, Qt 6.9.0 Qt runtime version: 6.9.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Air Model Identifier: Mac14,2 Model Number: Z161000R3CH/A Chip: Apple M2 Total Number of Cores: 8 (4 Performance and 4 Efficiency) Memory: 24 GB System Firmware Version: 13822.81.10 OS Loader Version: 13822.81.10 Software: System Software Overview: System Version: macOS 26.3 (25D125) Kernel Version: Darwin 25.3.0 Time since boot: 1天34分钟 Graphics/Displays: Apple M2: Chipset Model: Apple M2 Type: GPU Bus: Built-In Total Number of Cores: 10 Vendor: Apple (0x106b) Metal Support: Metal 4 Displays: Color LCD: Display Type: Built-in Liquid Retina Display Resolution: 2560 x 1664 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: aiohappyeyeballs: 2.6.1 aiohttp: 3.13.1 aiosignal: 1.4.0 alabaster: 1.0.0 annotated-types: 0.7.0 anyio: 4.12.1 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.1 attrs: 25.4.0 babel: 2.17.0 beautifulsoup4: 4.13.5 blockdiag: 3.0.0 blosc2: 3.12.2 build: 1.3.0 certifi: 2025.7.14 cftime: 1.6.5 charset-normalizer: 3.4.4 ChimeraX-AddCharge: 1.5.20 ChimeraX-AddH: 2.2.8 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 3.1.1 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Animations: 1.0 ChimeraX-Aniso: 1.3.2 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.61.4 ChimeraX-AtomicLibrary: 14.2.1 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.1 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.6.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3.0 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.11.1 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.4 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.3 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.4 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.7.3 ChimeraX-Label: 1.2 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.2 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.2.2 ChimeraX-MCopy: 1.0 ChimeraX-MCPServer: 0.1.0 ChimeraX-MDcrds: 2.17.2 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-Minimize: 1.3.2 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.22 ChimeraX-ModelPanel: 1.6 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0.1 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.15.2 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.12 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.5 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.4 ChimeraX-ProfileGrids: 1.4.2 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.5 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.3 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.2 ChimeraX-Scenes: 0.3.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.10 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.17.3 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.49.1 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDock: 1.5.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 click: 8.3.1 colorama: 0.4.6 comm: 0.2.3 contourpy: 1.3.3 coverage: 7.13.1 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.1.4 debugpy: 1.8.19 decorator: 5.2.1 docutils: 0.21.2 executing: 2.2.1 filelock: 3.19.1 fonttools: 4.61.1 frozenlist: 1.8.0 funcparserlib: 2.0.0a0 glfw: 2.10.0 grako: 3.16.5 h11: 0.16.0 h5py: 3.15.1 html2text: 2025.4.15 httpcore: 1.0.9 httpx: 0.28.1 httpx-sse: 0.4.3 idna: 3.11 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 1.4.1 iniconfig: 2.3.0 ipykernel: 6.30.1 ipython: 9.5.0 ipython_pygments_lexers: 1.1.1 ipywidgets: 8.1.8 jedi: 0.19.2 Jinja2: 3.1.6 jsonschema: 4.26.0 jsonschema-specifications: 2025.9.1 jupyter_client: 8.6.3 jupyter_core: 5.9.1 jupyterlab_widgets: 3.0.16 kiwisolver: 1.4.9 line_profiler: 5.0.0 lxml: 6.0.2 lz4: 4.3.2 Markdown: 3.8.2 MarkupSafe: 3.0.3 matplotlib: 3.10.7 matplotlib-inline: 0.2.1 mcp: 1.18.0 msgpack: 1.1.1 multidict: 6.7.0 ndindex: 1.10.1 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.14.1 numpy: 1.26.4 OpenMM: 8.2.0 openvr: 1.26.701 packaging: 25.0 ParmEd: 4.2.2 parso: 0.8.5 pep517: 0.13.1 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 11.3.0 pip: 25.2 pkginfo: 1.12.1.2 platformdirs: 4.5.1 pluggy: 1.6.0 prompt_toolkit: 3.0.52 propcache: 0.4.1 psutil: 7.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pybind11: 3.0.1 pycollada: 0.8 pydantic: 2.12.5 pydantic-settings: 2.12.0 pydantic_core: 2.41.5 pydicom: 2.4.4 Pygments: 2.18.0 pynmrstar: 3.3.6 pynrrd: 1.0.0 PyOpenGL: 3.1.10 PyOpenGL-accelerate: 3.1.10 pyopenxr: 1.1.4501 pyparsing: 3.3.2 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.9.1 PyQt6-Qt6: 6.9.2 PyQt6-WebEngine-commercial: 6.9.0 PyQt6-WebEngine-Qt6: 6.9.2 PyQt6_sip: 13.10.2 pytest: 9.0.2 pytest-cov: 7.0.0 python-dateutil: 2.9.0.post0 python-dotenv: 1.2.1 python-multipart: 0.0.21 pyzmq: 27.1.0 qtconsole: 5.7.0 QtPy: 2.4.3 qtshim: 1.2 RandomWords: 0.4.0 referencing: 0.37.0 requests: 2.32.5 roman-numerals: 4.1.0 roman-numerals-py: 4.1.0 rpds-py: 0.30.0 scipy: 1.14.0 setuptools: 80.9.0 sfftk-rw: 0.8.1 six: 1.17.0 snowballstemmer: 3.0.1 sortedcontainers: 2.4.0 soupsieve: 2.8.3 Sphinx: 8.2.3 sphinx-autodoc-typehints: 3.2.0 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 sse-starlette: 3.2.0 stack-data: 0.6.3 starlette: 0.52.1 superqt: 0.7.6 tables: 3.10.2 tcia_utils: 1.5.1 tifffile: 2025.3.13 tinyarray: 1.2.5 tornado: 6.5.4 traitlets: 5.14.3 typing-inspection: 0.4.2 typing_extensions: 4.15.0 urllib3: 2.6.3 uvicorn: 0.40.0 wcwidth: 0.3.2 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 widgetsnbextension: 4.0.15 yarl: 1.22.0 }}} " defect closed normal Graphics duplicate all ChimeraX