id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 19851 Crash in swap_buffers when status line exposed chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-26.2-arm64-arm-64bit ChimeraX Version: 1.11.1 (2026-01-23 05:51:34 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Bus error Current thread 0x000000020c55ec40 (most recent call first): File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 248 in swap_buffers File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 561 in swap_buffers File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/statusbar.py"", line 166 in status File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/statusbar.py"", line 98 in _expose_event File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 122 in make_current File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 555 in make_current File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 584 in use_shared_context File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/sideview/tool.py"", line 316 in render File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/sideview/tool.py"", line 115 in _redraw File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py"", line 149 in invoke File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py"", line 248 in _activate File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py"", line 217 in activate File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/triggerset.py"", line 393 in activate_trigger File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py"", line 100 in draw_new_frame File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py"", line 169 in update_graphics_now File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/graphics.py"", line 153 in resizeEvent File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/graphics.py"", line 61 in event File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 414 in event_loop File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1064 in init File ""/Applications/ChimeraX-1.11.1.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1229 in File """", line 88 in _run_code File """", line 198 in _run_module_as_main Extension modules: chimerax.arrays._arrays, 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5653544960, ""uuid"" : ""acb998b6-263c-3634-b0a8-ae8270a116c2"" }, ""vmSummary"" : ""ReadOnly portion of Libraries: Total=2.1G resident=0K(0%) swapped_out_or_unallocated=2.1G(100%) Writable regions: Total=1.2G written=12.6M(1%) resident=1490K(0%) swapped_out=11.1M(1%) unallocated=1.2G(99%) VIRTUAL REGION REGION TYPE SIZE COUNT (non-coalesced) =========== ======= ======= Accelerate framework 128K 1 Activity Tracing 256K 1 AttributeGraph Data 1024K 1 CG image 992K 36 ColorSync 352K 22 CoreAnimation 42.8M 149 CoreGraphics 32K 2 CoreImage 128K 4 CoreServices 624K 2 CoreUI image data 5552K 42 Foundation 32K 2 Kernel Alloc Once 48K 2 MALLOC 519.9M 109 MALLOC guard page 3408K 4 Mach message 64K 2 OpenGL GLSL 256K 3 PROTECTED_MEMORY 16K 1 STACK GUARD 912K 57 STACK GUARD (graphics) 16K 1 Stack 233.4M 59 Stack Guard 56.0M 1 VM_ALLOCATE 227.5M 421 VM_ALLOCATE (reserved) 192.0M 1 reserved VM address space (unallocated) __AUTH 5935K 653 __AUTH_CONST 90.0M 1043 __CTF 824 1 __DATA 43.8M 1145 __DATA_CONST 59.6M 1190 __DATA_DIRTY 8784K 902 __FONT_DATA 2352 1 __GLSLBUILTINS 5176K 1 __INFO_FILTER 8 1 __LINKEDIT 622.4M 143 __OBJC_RO 78.4M 1 __OBJC_RW 2570K 1 __TEXT 1.5G 1209 __TEXT (graphics) 4096K 4 __TPRO_CONST 128K 2 dyld private memory 1712K 15 mapped file 833.7M 101 page table in kernel 1490K 1 shared memory 4304K 33 =========== ======= ======= TOTAL 4.4G 7370 TOTAL, minus reserved VM space 4.2G 7370 "", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""logWritingSignature"" : ""6c73b02aa4997489836c91a18f17d416acd8ebb0"", ""bug_type"" : ""309"", ""roots_installed"" : 0, ""trmStatus"" : 1, ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""5fb4245a1bbfe8005e33a1e1"", ""factorPackIds"" : [ ], ""deploymentId"" : 240000021 }, { ""rolloutId"" : ""6410af69ed1e1e7ab93ed169"", ""factorPackIds"" : [ ], ""deploymentId"" : 240000011 } ], ""experiments"" : [ ] } } ===== Log before crash start ===== UCSF ChimeraX version: 1.11.1 (2026-01-23) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/paulminges/Library/CloudStorage/OneDrive- > Personal/Documents/ResearchStuff/AG-Eder/2. Research/5. Endometriosis/1. > Target > Development/Structure_Analysis/MMP-10_01-476/AF-P09238-F1-model_v6.cif"" Chain information for AF-P09238-F1-model_v6.cif #1 --- Chain | Description | UniProt A | Stromelysin-2 | MMP10_HUMAN 1-476 Color AF-P09238-F1-model_v6.cif by residue attribute pLDDT_score > open ""/Users/paulminges/Library/CloudStorage/OneDrive- > Personal/Documents/ResearchStuff/AG-Eder/2. Research/5. Endometriosis/1. > Target > Development/Structure_Analysis/MMP-10_99-476/fold_2026_02_06_14_30_model_0.cif"" Chain information for fold_2026_02_06_14_30_model_0.cif #2 --- Chain | Description A | . Computing secondary structure > ui tool show Matchmaker > matchmaker #2 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker AF-P09238-F1-model_v6.cif, chain A (#1) with fold_2026_02_06_14_30_model_0.cif, chain A (#2), sequence alignment score = 1989.3 RMSD between 140 pruned atom pairs is 0.280 angstroms; (across all 378 pairs: 18.064) > color #1 bfactor palette alphafold Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero', 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', 'fromcartoons', 'fromribbons', or 'random' or a keyword > color byattribute bfactor palette alphafold 6887 atoms, 854 residues, atom bfactor range 20.2 to 98.9 > hide #1 models > show #1 models > hide #1 models > show #1 models > hide #2 models > hide #1 models > show #2 models > show :167 atoms > style :167 stick Changed 17 atom styles > style :169 stick Changed 13 atom styles > show :169 atoms > undo > show :69 atoms > show :71 atoms > show :83 atoms > show :97 atoms > show :119 atoms > show :120 atoms > show :123 atoms > show :129 atoms > show :191 atoms > show :378 atoms > ui tool show ""Build Structure"" > ui tool show ""Find Cavities"" pyKVFinder module not installed; fetching from PyPi repository... Errors may have occurred when running pip: pip standard error: \--- ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. nptyping 2.5.0 requires numpy=1.20.0; python_version >= ""3.8"", but you have numpy 2.4.2 which is incompatible. scipy 1.14.0 requires numpy=1.23.5, but you have numpy 2.4.2 which is incompatible. \--- pip standard output: \--- \--- pyKVFinder module installed from PyPi repository. > kvfinder #2 27 cavities found for fold_2026_02_06_14_30_model_0.cif #2 fold_2026_02_06_14_30_model_0.cif Cavities --- ID | | Volume | Area | Points | Maximum Depth | Average Depth 2.1.19 | | 1202.04 | 900.1 | 5565 | 5.63 | 1.65 2.1.12 | | 119.23 | 120.41 | 552 | 6.03 | 2.71 2.1.1 | | 41.9 | 54.14 | 194 | 1.2 | 0.38 2.1.7 | | 37.15 | 57.87 | 172 | 2.24 | 0.72 2.1.24 | | 31.32 | 42.28 | 145 | 2.16 | 0.82 2.1.23 | | 31.1 | 35.48 | 144 | 1.8 | 0.41 2.1.8 | | 30.67 | 46.66 | 142 | 0 | 0 2.1.13 | | 30.67 | 42.97 | 142 | 1.9 | 0.47 2.1.18 | | 28.08 | 38.21 | 130 | 1.8 | 0.36 2.1.11 | | 25.7 | 37.58 | 119 | 3 | 1.39 2.1.20 | | 24.19 | 55.39 | 112 | 0 | 0 2.1.3 | | 22.9 | 41.28 | 106 | 0 | 0 2.1.10 | | 21.38 | 30.86 | 99 | 1.34 | 0.34 2.1.2 | | 16.63 | 31.73 | 77 | 2.24 | 1.34 2.1.16 | | 16.63 | 31.34 | 77 | 2.68 | 1.49 2.1.9 | | 15.12 | 30.2 | 70 | 1.9 | 0.72 2.1.4 | | 14.69 | 21.65 | 68 | 0.6 | 0.2 2.1.5 | | 12.31 | 29.54 | 57 | 0 | 0 2.1.14 | | 12.31 | 29.54 | 57 | 0 | 0 2.1.17 | | 12.31 | 29.54 | 57 | 0 | 0 2.1.26 | | 12.1 | 28.58 | 56 | 2.16 | 1.25 2.1.22 | | 11.66 | 21.35 | 54 | 0.85 | 0.25 2.1.6 | | 11.23 | 25.38 | 52 | 1.8 | 0.89 2.1.25 | | 10.8 | 21.69 | 50 | 1.34 | 0.52 2.1.15 | | 5.18 | 11.03 | 24 | 0.6 | 0.12 2.1.21 | | 5.18 | 10.41 | 24 | 0.85 | 0.24 2.1.27 | | 5.18 | 11.35 | 24 | 0.85 | 0.3 Populating font family aliases took 34 ms. Replace uses of missing font family ""Times"" with one that exists to avoid this cost. > color #2.1.19 #ff40ff > color #2.1.12 #ff2600 > view #2.1.1 @ zoom 0.75 moved plane near -21.752435582755222 [ 0.59065753 -0.77190435 -0.23513262] moved plane far -21.752435582755222 [ 0.59065753 -0.77190435 -0.23513262] > surface #2.1.1-27 transparency 50 > ~surface #2.1 > surface #2.1.1 > show #!2/A:302,309,330-331,348,359,361,364 > view #!2.1.7 @ zoom 0.75 moved plane near -13.710346461062557 [-0.92443344 0.350093 0.15118761] moved plane far -13.710346461062557 [-0.92443344 0.350093 0.15118761] > ~surface #2.1 > surface #!2.1.7 > show #!2/A:245,247,250,254,256,261,273,275,279-280,312,314,317 > view #!2.1.7,24 @ zoom 0.75 moved plane near -71.73390792852253 [0.08976338 0.93453977 0.3443515 ] moved plane far -71.73390792852253 [0.08976338 0.93453977 0.3443515 ] > ~surface #2.1 > surface #!2.1.7,24 > show > #!2/A:107-108,112,115,141-145,147,245,247,250,254,256,261,273,275,279-280,312,314,317 > view #!2.1.7,23-24 @ zoom 0.75 moved plane near -77.44345474660477 [0.08976338 0.93453977 0.3443515 ] moved plane far -77.44345474660477 [0.08976338 0.93453977 0.3443515 ] > ~surface #2.1 > surface #!2.1.7,23-24 > show > #!2/A:41,44-45,107-108,112,114-115,141-145,147,150-152,245,247,250,254,256,261,273,275,279-280,312,314,317 > view #!2.1.1 @ zoom 0.75 moved plane near -25.69081191973434 [0.08976338 0.93453977 0.3443515 ] moved plane far -25.69081191973434 [0.08976338 0.93453977 0.3443515 ] > ~surface #2.1 > surface #!2.1.1 > show #!2/A:302,309,330-331,348,359,361,364 > view #!2.1.1,7 @ zoom 0.75 moved plane near -43.006016773335745 [0.08976338 0.93453977 0.3443515 ] moved plane far -43.006016773335745 [0.08976338 0.93453977 0.3443515 ] > ~surface #2.1 > surface #!2.1.1,7 > show > #!2/A:245,247,250,254,256,261,273,275,279-280,302,309,312,314,317,330-331,348,359,361,364 > view #!2.1.1,7,24 @ zoom 0.75 moved plane near -89.17790178593533 [0.08976338 0.93453977 0.3443515 ] moved plane far -89.17790178593533 [0.08976338 0.93453977 0.3443515 ] > ~surface #2.1 > surface #!2.1.1,7,24 > show > #!2/A:107-108,112,115,141-145,147,245,247,250,254,256,261,273,275,279-280,302,309,312,314,317,330-331,348,359,361,364 > view #!2.1.1,7,23-24 @ zoom 0.75 moved plane near -96.11064593109636 [0.08976338 0.93453977 0.3443515 ] moved plane far -96.11064593109636 [0.08976338 0.93453977 0.3443515 ] > ~surface #2.1 > surface #!2.1.1,7,23-24 > show > #!2/A:41,44-45,107-108,112,114-115,141-145,147,150-152,245,247,250,254,256,261,273,275,279-280,302,309,312,314,317,330-331,348,359,361,364 > view #!2.1.1,7,13,23-24 @ zoom 0.75 moved plane near -96.38713809328924 [0.08976338 0.93453977 0.3443515 ] moved plane far -96.38713809328924 [0.08976338 0.93453977 0.3443515 ] > ~surface #2.1 > surface #!2.1.1,7,13,23-24 > show > #!2/A:41,44-45,107-108,112,114-115,141-145,147,150-152,245-250,254,256,261,273,275,279-280,294-296,299-300,302,309,312,314,317,330-331,348,359,361,364 > view #!2.1.1,7-8,13,18,23-24 @ zoom 0.75 moved plane near -98.07428086281509 [0.08976338 0.93453977 0.3443515 ] moved plane far -98.07428086281509 [0.08976338 0.93453977 0.3443515 ] > ~surface #2.1 > surface #!2.1.1,7-8,13,18,23-24 > show > #!2/A:41,44-45,107-108,112,114-115,141-145,147,150-152,199-200,207,218-220,222-223,243-250,254,256,261,273,275,279-280,291-292,294-296,299-300,302,309,312,314,317,330-331,339-341,348,359,361,364,377 > view #!2.1.1,7-8,11,13,18,20,23-24 @ zoom 0.75 moved plane near -98.07428086281509 [0.08976338 0.93453977 0.3443515 ] moved plane far -98.07428086281509 [0.08976338 0.93453977 0.3443515 ] > ~surface #2.1 > surface #!2.1.1,7-8,11,13,18,20,23-24 > show > #!2/A:1-2,41,44-45,107-108,112,114-115,127-130,135,137,141-145,147,150-152,155-156,192-195,199-200,207,218-220,222-223,243-250,254,256,261,273,275,279-280,291-292,294-296,299-300,302,309,312,314,317,330-331,339-341,348,354,359,361,364,371-373,377 > view #!2.1.1,3,7-8,11,13,18,20,23-24 @ zoom 0.75 moved plane near -98.07428086281509 [0.08976338 0.93453977 0.3443515 ] moved plane far -98.07428086281509 [0.08976338 0.93453977 0.3443515 ] > ~surface #2.1 > surface #!2.1.1,3,7-8,11,13,18,20,23-24 > show > #!2/A:1-2,41,44-45,107-108,112,114-115,127-130,135,137,141-145,147,150-152,155-156,192-195,199-200,207,218-220,222-223,243-250,254,256,261,273,275,279-280,291-292,294-296,299-300,302,309,312,314,317,330-331,334-335,337-341,348,350-352,354,357,359,361,364,371-373,377 > view #!2.1.1,3,7-8,10-11,13,16,18,20,23-24 @ zoom 0.75 moved plane near -98.07428086281509 [0.08976338 0.93453977 0.3443515 ] moved plane far -98.07428086281509 [0.08976338 0.93453977 0.3443515 ] > ~surface #2.1 > surface #!2.1.1,3,7-8,10-11,13,16,18,20,23-24 > show > #!2/A:1-2,41,44-45,107-108,112,114-115,127-130,135,137,141-145,147,150-152,155-156,192-195,199-200,203-204,207,218-220,222-223,243-254,256,261,264-266,273,275,279-280,291-292,294-300,302,309,312,314,317,330-331,334-335,337-341,343,346,348,350-352,354,357,359,361,364,371-373,377 > view #!2.1.1-3,7-11,13,16,18,20,23-24 @ zoom 0.75 moved plane near -99.51619423592759 [0.08976338 0.93453977 0.3443515 ] moved plane far -99.51619423592759 [0.08976338 0.93453977 0.3443515 ] > ~surface #2.1 > surface #!2.1.1-3,7-11,13,16,18,20,23-24 > show > #!2/A:1-2,41,44-45,107-108,112,114-115,127-130,135,137,141-145,147,150-152,155-156,192-195,199-200,203-204,207,218-220,222-223,243-254,256,261,264-266,273,275,279-280,290-292,294-300,302,304-306,309,312,314,317,327,330-331,334-341,343,346,348-352,354,356-359,361,364,368-373,377 > view #!2.1.1-5,7-11,13-14,16-18,20,23-24 @ zoom 0.75 moved plane near -99.56419069638942 [0.08976338 0.93453977 0.3443515 ] moved plane far -99.56419069638942 [0.08976338 0.93453977 0.3443515 ] > ~surface #2.1 > surface #!2.1.1-5,7-11,13-14,16-18,20,23-24 > show > #!2/A:1-2,41,44-45,107-108,112,114-115,127-130,135,137,141-145,147,150-152,155-156,192-195,198-200,203-204,207,210-214,218-220,222-223,230,234,240-254,256,261,264-266,273,275,279-280,288-300,302,304-306,309,312,314,317,327,330-331,334-341,343,346,348-352,354,356-359,361,364,368-373,377 > view #!2.1.1-5,7-11,13-14,16-18,20,22-24,26 @ zoom 0.75 moved plane near -103.20599891138795 [0.08976338 0.93453977 0.3443515 ] moved plane far -103.20599891138795 [0.08976338 0.93453977 0.3443515 ] > ~surface #2.1 > surface #!2.1.1-5,7-11,13-14,16-18,20,22-24,26 > show > #!2/A:1-2,10,17,19,32,35-36,41,44-45,52,58-61,89,91,93,95,107-108,112,114-115,127-130,135,137,141-145,147,150-152,155-156,192-195,198-200,203-204,207,210-214,218-220,222-223,230,234,240-254,256,261,264-266,273,275,279-280,288-300,302,304-306,309,312,314,317,327,330-331,334-341,343,346,348-352,354,356-359,361,364,368-373,377 > view #!2.1.1-11,13-14,16-18,20,22-24,26 @ zoom 0.75 moved plane near -104.47141913339895 [0.08976338 0.93453977 0.3443515 ] moved plane far -104.47141913339895 [0.08976338 0.93453977 0.3443515 ] > ~surface #2.1 > surface #!2.1.1-11,13-14,16-18,20,22-24,26 > show > #!2/A:1-2,10,17,19,32,35-36,41,44-45,52,58-61,89,91,93,95,107-108,112,114-115,127-130,135,137,141-145,147,150-152,155-156,192-200,203-204,207,210-214,218-220,222-223,230,234,240-254,256,261,264-266,273,275,279-280,288-300,302,304-306,309,312,314,317,327,330-331,334-341,343,346,348-354,356-359,361,364,368-373,377 > view #!2.1.1-11,13-14,16-18,20,22-26 @ zoom 0.75 moved plane near -104.47141913339895 [0.08976338 0.93453977 0.3443515 ] moved plane far -104.47141913339895 [0.08976338 0.93453977 0.3443515 ] > ~surface #2.1 > surface #!2.1.1-11,13-14,16-18,20,22-26 > show > #!2/A:1-2,10,17,19,26,32,34-36,41,44-45,52,58-61,89,91,93,95,105-108,112-115,127-130,135,137,141-145,147,150-152,155-156,192-200,203-204,207,210-214,218-220,222-223,230,234,240-254,256,261,264-266,273,275,279-280,288-300,302,304-306,309,312,314,317,327,330-331,334-341,343,346,348-354,356-359,361,364,368-373,377 > view #!2.1.1-11,13-14,16-18,20-27 @ zoom 0.75 moved plane near -104.47141913339895 [0.08976338 0.93453977 0.3443515 ] moved plane far -104.47141913339895 [0.08976338 0.93453977 0.3443515 ] > ~surface #2.1 > surface #!2.1.1-11,13-14,16-18,20-27 > show > #!2/A:1-2,10,17-19,26,32,34-36,41,44-45,52-54,58-61,68-74,89,91,93,95,105-108,112-115,127-130,135,137,141-145,147,150-152,155-156,192-200,203-204,207,210-214,218-220,222-223,230,234,240-254,256,261,264-266,273,275,279-280,288-300,302,304-306,309,312,314,317,327,330-331,334-341,343,346,348-354,356-359,361,364,368-373,377 > view #!2.1.1-11,13-18,20-27 @ zoom 0.75 moved plane near -104.96791811060478 [0.08976338 0.93453977 0.3443515 ] moved plane far -104.96791811060478 [0.08976338 0.93453977 0.3443515 ] > ~surface #2.1 > surface #!2.1.1-11,13-18,20-27 > show > #!2/A:1-2,10,17-19,26,32,34-36,41,44-45,52-54,58-61,68-74,89,91,93,95,105-108,112-115,127-130,135,137,141-145,147,150-152,155-156,192-200,203-204,207,210-214,218-220,222-223,229-231,234,239-254,256,261,264-266,273,275,279-280,288-300,302,304-306,309,312,314,317,327,330-331,334-341,343,346,348-354,356-359,361,364,368-373,377 > color #2.1.12 #ffffff > color #2.1.1 #ffffff > color #2.1.7 #ffffff > color #2.1.24 #ffffff > color #2.1.23 #ffffff > color #2.1.13 #ffffff > hide > #!2/A:1-2,10,17-19,26,32,34-36,41,44-45,52-54,58-61,68-74,89,91,93,95,105-108,112-115,127-130,135,137,141-145,147,150-152,155-156,192-200,203-204,207,210-214,218-220,222-223,229-231,234,239-254,256,261,264-266,273,275,279-280,288-300,302,304-306,309,312,314,317,327,330-331,334-341,343,346,348-354,356-359,361,364,368-373,377 > show > #!2/A:1-2,10,17-19,26,32,34-36,41,44-45,52-54,58-61,68-74,89,91,93,95,105-108,112-115,127-130,135,137,141-145,147,150-152,155-156,192-200,203-204,207,210-214,218-220,222-223,229-231,234,239-254,256,261,264-266,273,275,279-280,288-300,302,304-306,309,312,314,317,327,330-331,334-341,343,346,348-354,356-359,361,364,368-373,377 > hide > #!2/A:1-2,10,17-19,26,32,34-36,41,44-45,52-54,58-61,68-74,89,91,93,95,105-108,112-115,127-130,135,137,141-145,147,150-152,155-156,192-200,203-204,207,210-214,218-220,222-223,229-231,234,239-254,256,261,264-266,273,275,279-280,288-300,302,304-306,309,312,314,317,327,330-331,334-341,343,346,348-354,356-359,361,364,368-373,377 > view #!2.1.19 @ zoom 0.75 moved plane near -66.85196856802646 [-0.92746716 0.35202427 0.12603003] moved plane far -66.85196856802646 [-0.92746716 0.35202427 0.12603003] > ~surface #2.1 > surface #!2.1.19 > color #2.1.19 #941751 > view #!2.1.12 @ zoom 0.75 moved plane near -27.30401751900054 [ 0.41664711 -0.83415078 -0.36138295] moved plane far -27.30401751900054 [ 0.41664711 -0.83415078 -0.36138295] > ~surface #2.1 > surface #!2.1.12 > show #!2/A:200-202,244-246,248,292-294,296,341-343 > view #!2.1.19 @ zoom 0.75 moved plane near -77.08884382566059 [-0.78084395 0.53449146 0.32342169] moved plane far -77.08884382566059 [-0.78084395 0.53449146 0.32342169] > ~surface #2.1 > surface #!2.1.19 > show > #!2/A:4-5,8,71-75,80-87,92-93,115-116,119-120,123,128-129,133-142,145,150-153,156,203-204,206,208,215,217-222,224-228,232-234,266-267 > view #!2.1.12 @ zoom 0.75 moved plane near -34.96102851020198 [-0.78084395 0.53449146 0.32342169] moved plane far -34.96102851020198 [-0.78084395 0.53449146 0.32342169] > ~surface #2.1 > surface #!2.1.12 > show #!2/A:200-202,244-246,248,292-294,296,341-343 > lighting full > hide #!2.1.3 models > hide #!2.1.4 models > hide #!2.1.5 models > hide #!2.1.6 models > hide #!2.1.9 models > hide #!2.1.10 models > hide #!2.1.11 models > hide #!2.1.12 models > hide #!2.1.13 models > hide #!2.1.14 models > hide #!2.1.15 models > hide #!2.1.16 models > hide #!2.1.17 models > hide #!2.1.19 models > hide #!2.1.20 models > hide #!2.1.21 models > hide #!2.1.22 models > hide #!2.1.23 models > hide #!2.1.26 models > hide #!2.1.25 models > hide #!2.1.24 models > hide #!2.1.27 models > hide #!2.1.18 models > hide #!2.1.7 models > hide #!2.1.8 models > ui favorite true ""Model Panel"" > select add #2.1 8369 atoms, 27 residues, 28 models selected > select subtract #2.1 27 models selected > select add #2.1 8369 atoms, 27 residues, 28 models selected > select subtract #2.1 27 models selected > lighting full > show #!2#!2.1.1-2 atoms > hide #!2#!2.1.1-2 atoms > undo > show sel & #!2.1.1-2 cartoons > rename #2 MMP10-Maturaed > show #!2.1.12 models > hide #!2.1.12 models > show #!2.1.11 models > hide #!2.1.11 models > show #!2.1.10 models > hide #!2.1.10 models > show #!2.1.22 models > hide #!2.1.22 models > show #!2.1.23 models > hide #!2.1.23 models > preset ""overall look"" ""publication 1 (silhouettes)"" Using preset: Overall Look / Publication 1 (Silhouettes) Preset expands to these ChimeraX commands: set bg white graphics silhouettes t lighting depthCue f > color byattribute a:kvfinder_depth #!2.1.1-2,4,6-7,9-13,15-16,18-19,21-27 7838 atoms, 21 residues, 21 surfaces, atom kvfinder_depth range 0 to 6.03 > toolshed show > preset ""overall look"" ""publication 2 (depth-cued)"" Using preset: Overall Look / Publication 2 (Depth-Cued) Preset expands to these ChimeraX commands: set bg white graphics silhouettes f lighting depthCue t > preset ""overall look"" ""publication 1 (silhouettes)"" Using preset: Overall Look / Publication 1 (Silhouettes) Preset expands to these ChimeraX commands: set bg white graphics silhouettes t lighting depthCue f > ui tool show ""Side View"" > lighting full > view orient > view #!2.1.16 @ zoom 0.75 moved plane near -23.8754916114606 [-0.85362759 -0.41623138 -0.31316351] moved plane far -23.8754916114606 [-0.85362759 -0.41623138 -0.31316351] > ~surface #2.1 > surface #!2.1.16 > show #!2/A:203-204,251-253,264-266 > ui tool show ""Side View"" > view #!2.1.19 @ zoom 0.75 moved plane near -71.46288334640842 [-0.85362759 -0.41623138 -0.31316351] moved plane far -71.46288334640842 [-0.85362759 -0.41623138 -0.31316351] > ~surface #2.1 > surface #!2.1.19 > show > #!2/A:4-5,8,71-75,80-87,92-93,115-116,119-120,123,128-129,133-142,145,150-153,156,203-204,206,208,215,217-222,224-228,232-234,266-267 > color #2.1.19 #941751 > show #!2.1.19 models > hide #!2.1.2 models > hide #!2.1.1 models > color #2.1.19 #941751fe > color #2.1.19 #941751fd > color #2.1.19 #941751f7 > color #2.1.19 #941751f5 > color #2.1.19 #941751ed > color #2.1.19 #941751e8 > color #2.1.19 #941751e1 > color #2.1.19 #941751db > color #2.1.19 #941751d6 > color #2.1.19 #941751d5 > color #2.1.19 #941751d4 > color #2.1.19 #941751d3 > color #2.1.19 #941751d1 > color #2.1.19 #941751d0 > color #2.1.19 #941751cf > color #2.1.19 #941751cd > color #2.1.19 #941751cc > color #2.1.19 #941751cb > color #2.1.19 #941751c5 > color #2.1.19 #941751c1 > color #2.1.19 #941751bb > color #2.1.19 #941751b3 > color #2.1.19 #941751b0 > color #2.1.19 #941751ae > color #2.1.19 #941751ad > color #2.1.19 #941751ac > color #2.1.19 #941751ab > color #2.1.19 #941751aa > color #2.1.19 #941751a9 > color #2.1.19 #941751a6 > color #2.1.19 #941751a5 > color #2.1.19 #941751a3 > color #2.1.19 #941751a2 > color #2.1.19 #941751a0 > color #2.1.19 #9417519f > color #2.1.19 #9417519d > color #2.1.19 #9417519c > color #2.1.19 #9417519b > color #2.1.19 #9417519a > color #2.1.19 #94175199 > color #2.1.19 #94175198 > color #2.1.19 #94175196 > color #2.1.19 #94175195 > color #2.1.19 #94175194 > color #2.1.19 #94175193 > color #2.1.19 #94175192 > color #2.1.19 #94175191 > color #2.1.19 #94175190 > color #2.1.19 #9417518f > color #2.1.19 #9417518d > color #2.1.19 #9417518c > color #2.1.19 #9417518a > color #2.1.19 #94175189 > color #2.1.19 #94175188 > color #2.1.19 #94175187 > color #2.1.19 #94175186 > color #2.1.19 #94175185 > color #2.1.19 #94175184 > color #2.1.19 #94175183 > color #2.1.19 #94175182 > color #2.1.19 #94175181 > color #2.1.19 #94175180 > show #1 models > hide #1 models > show sel & #!2.1.19 surfaces > surface (#!2.1.19 & sel) > open /Users/paulminges/Downloads/conservation.defattr Summary of feedback from opening /Users/paulminges/Downloads/conservation.defattr --- note | Assigned attribute 'conservation' to 783 residues using match mode: any > close #1 > open ""/Users/paulminges/Library/CloudStorage/OneDrive- > Personal/Documents/ResearchStuff/AG-Eder/2. Research/5. Endometriosis/1. > Target > Development/Structure_Analysis/MMP-10_99-476/fold_2026_02_06_14_30_model_0.cif"" Chain information for fold_2026_02_06_14_30_model_0.cif #1 --- Chain | Description A | . Computing secondary structure > ui tool show Matchmaker > matchmaker #!2 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker fold_2026_02_06_14_30_model_0.cif, chain A (#1) with MMP10-Maturaed, chain A (#2), sequence alignment score = 1989.3 RMSD between 378 pruned atom pairs is 0.000 angstroms; (across all 378 pairs: 0.000) > select add #2 11423 atoms, 3163 bonds, 405 residues, 57 models selected > select subtract #2 27 models selected > select add #2 11423 atoms, 3163 bonds, 405 residues, 30 models selected > select subtract #2 27 models selected > move x 50 models #2 > move x 10 models #2 > rename #2 MMP10-Maturaed_pLDDT > rename #2 MMP10-Maturated_pLDDT > rename #1 MMP10-Maturated_Cons > open conservation.defattr No such file/path: conservation.defattr > color #1 byattribute conservation palette red-white-blue Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero', 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', 'fromcartoons', 'fromribbons', or 'random' or a keyword > open conservation.defattr No such file/path: conservation.defattr > open ""/Users/paulminges/Library/CloudStorage/OneDrive- > Personal/Documents/ResearchStuff/AG-Eder/2. Research/5. Endometriosis/1. > Target Development/Structure_Analysis/MMP-10_99-476/conservation.defattr"" Summary of feedback from opening /Users/paulminges/Library/CloudStorage/OneDrive- Personal/Documents/ResearchStuff/AG-Eder/2. Research/5. Endometriosis/1. Target Development/Structure_Analysis/MMP-10_99-476/conservation.defattr --- note | Assigned attribute 'conservation' to 783 residues using match mode: any > color #2 byattribute conservation palette red-white-blue Expected a color or one of 'byatom', 'bychain', 'byelement', 'byhetero', 'byidentity', 'bymodel', 'bynucleotide', 'bypolymer', 'fromatoms', 'fromcartoons', 'fromribbons', or 'random' or a keyword > select add #1 3054 atoms, 3163 bonds, 378 residues, 1 model selected > ui tool show ""Render/Select by Attribute"" > info residues #1 attribute conservation residue id #1/A:1 conservation 0.2609 index 0 residue id #1/A:2 conservation 0.2174 index 1 residue id #1/A:3 conservation 0.1304 index 2 residue id #1/A:4 conservation 0.3043 index 3 residue id #1/A:5 conservation 0.4783 index 4 residue id #1/A:6 conservation 0.3478 index 5 residue id #1/A:7 conservation 0.0435 index 6 residue id #1/A:8 conservation 0.3913 index 7 residue id #1/A:9 conservation 0.6522 index 8 residue id #1/A:10 conservation 0.9565 index 9 residue id #1/A:11 conservation 0.2609 index 10 residue id #1/A:12 conservation 0.6087 index 11 residue id #1/A:13 conservation 0.2174 index 12 residue id #1/A:14 conservation 0.3478 index 13 residue id #1/A:15 conservation 0.6957 index 14 residue id #1/A:16 conservation 0.8696 index 15 residue id #1/A:17 conservation 0.7391 index 16 residue id #1/A:18 conservation 0.7826 index 17 residue id #1/A:19 conservation 0.8261 index 18 residue id #1/A:20 conservation 0.2174 index 19 residue id #1/A:21 conservation 0.6522 index 20 residue id #1/A:22 conservation 0.6522 index 21 residue id #1/A:23 conservation 0.6087 index 22 residue id #1/A:24 conservation 0.5217 index 23 residue id #1/A:25 conservation 0.4348 index 24 residue id #1/A:26 conservation 0.6522 index 25 residue id #1/A:27 conservation 0.3043 index 26 residue id #1/A:28 conservation 0.2174 index 27 residue id #1/A:29 conservation 0.1304 index 28 residue id #1/A:30 conservation 0.2609 index 29 residue id #1/A:31 conservation 0.6522 index 30 residue id #1/A:32 conservation 0.3913 index 31 residue id #1/A:33 conservation 0.087 index 32 residue id #1/A:34 conservation 0.7391 index 33 residue id #1/A:35 conservation 0.3913 index 34 residue id #1/A:36 conservation 0.1739 index 35 residue id #1/A:37 conservation 0.3043 index 36 residue id #1/A:38 conservation 0.9565 index 37 residue id #1/A:39 conservation 0.3478 index 38 residue id #1/A:40 conservation 0.2174 index 39 residue id #1/A:41 conservation 0.5217 index 40 residue id #1/A:42 conservation 1.0 index 41 residue id #1/A:43 conservation 0.1739 index 42 residue id #1/A:44 conservation 0.1304 index 43 residue id #1/A:45 conservation 0.6957 index 44 residue id #1/A:46 conservation 0.6522 index 45 residue id #1/A:47 conservation 0.913 index 46 residue id #1/A:48 conservation 0.9565 index 47 residue id #1/A:49 conservation 0.3913 index 48 residue id #1/A:50 conservation 1.0 index 49 residue id #1/A:51 conservation 0.1739 index 50 residue id #1/A:52 conservation 0.3043 index 51 residue id #1/A:53 conservation 0.1304 index 52 residue id #1/A:54 conservation 0.1304 index 53 residue id #1/A:55 conservation 0.2609 index 54 residue id #1/A:56 conservation 0.6087 index 55 residue id #1/A:57 conservation 0.3478 index 56 residue id #1/A:58 conservation 0.8261 index 57 residue id #1/A:59 conservation 1.0 index 58 residue id #1/A:60 conservation 0.9565 index 59 residue id #1/A:61 conservation 0.5217 index 60 residue id #1/A:62 conservation 0.7391 index 61 residue id #1/A:63 conservation 0.3043 index 62 residue id #1/A:64 conservation 1.0 index 63 residue id #1/A:65 conservation 0.4348 index 64 residue id #1/A:66 conservation 0.1304 index 65 residue id #1/A:67 conservation 0.087 index 66 residue id #1/A:68 conservation 0.2174 index 67 residue id #1/A:69 conservation 0.9565 index 68 residue id #1/A:70 conservation 0.6522 index 69 residue id #1/A:71 conservation 0.8696 index 70 residue id #1/A:72 conservation 0.1739 index 71 residue id #1/A:73 conservation 0.3913 index 72 residue id #1/A:74 conservation 0.0435 index 73 residue id #1/A:75 conservation 1.0 index 74 residue id #1/A:76 conservation 1.0 index 75 residue id #1/A:77 conservation 1.0 index 76 residue id #1/A:78 conservation 0.6087 index 77 residue id #1/A:79 conservation 0.6957 index 78 residue id #1/A:80 conservation 0.0435 index 79 residue id #1/A:81 conservation 0.0435 index 80 residue id #1/A:82 conservation 0.913 index 81 residue id #1/A:83 conservation 0.913 index 82 residue id #1/A:84 conservation 1.0 index 83 residue id #1/A:85 conservation 1.0 index 84 residue id #1/A:86 conservation 0.2609 index 85 residue id #1/A:87 conservation 0.1739 index 86 residue id #1/A:88 conservation 0.9565 index 87 residue id #1/A:89 conservation 0.7391 index 88 residue id #1/A:90 conservation 0.4348 index 89 residue id #1/A:91 conservation 0.6087 index 90 residue id #1/A:92 conservation 0.2174 index 91 residue id #1/A:93 conservation 0.0435 index 92 residue id #1/A:94 conservation 1.0 index 93 residue id #1/A:95 conservation 0.8261 index 94 residue id #1/A:96 conservation 0.1304 index 95 residue id #1/A:97 conservation 1.0 index 96 residue id #1/A:98 conservation 1.0 index 97 residue id #1/A:99 conservation 1.0 index 98 residue id #1/A:100 conservation 0.3913 index 99 residue id #1/A:101 conservation 0.7391 index 100 residue id #1/A:102 conservation 1.0 index 101 residue id #1/A:103 conservation 0.087 index 102 residue id #1/A:104 conservation 0.9565 index 103 residue id #1/A:105 conservation 0.8261 index 104 residue id #1/A:106 conservation 0.087 index 105 residue id #1/A:107 conservation 0.1304 index 106 residue id #1/A:108 conservation 0.0435 index 107 residue id #1/A:109 conservation 0.0435 index 108 residue id #1/A:110 conservation 0.8696 index 109 residue id #1/A:111 conservation 0.2609 index 110 residue id #1/A:112 conservation 0.5652 index 111 residue id #1/A:113 conservation 0.913 index 112 residue id #1/A:114 conservation 0.7391 index 113 residue id #1/A:115 conservation 0.5652 index 114 residue id #1/A:116 conservation 0.8696 index 115 residue id #1/A:117 conservation 0.9565 index 116 residue id #1/A:118 conservation 0.5652 index 117 residue id #1/A:119 conservation 1.0 index 118 residue id #1/A:120 conservation 1.0 index 119 residue id #1/A:121 conservation 0.3043 index 120 residue id #1/A:122 conservation 1.0 index 121 residue id #1/A:123 conservation 1.0 index 122 residue id #1/A:124 conservation 0.3478 index 123 residue id #1/A:125 conservation 0.913 index 124 residue id #1/A:126 conservation 1.0 index 125 residue id #1/A:127 conservation 0.9565 index 126 residue id #1/A:128 conservation 0.087 index 127 residue id #1/A:129 conservation 1.0 index 128 residue id #1/A:130 conservation 0.8696 index 129 residue id #1/A:131 conservation 0.1304 index 130 residue id #1/A:132 conservation 0.1739 index 131 residue id #1/A:133 conservation 0.1304 index 132 residue id #1/A:134 conservation 0.1304 index 133 residue id #1/A:135 conservation 0.8261 index 134 residue id #1/A:136 conservation 0.5652 index 135 residue id #1/A:137 conservation 1.0 index 136 residue id #1/A:138 conservation 0.3478 index 137 residue id #1/A:139 conservation 0.913 index 138 residue id #1/A:140 conservation 0.087 index 139 residue id #1/A:141 conservation 0.9565 index 140 residue id #1/A:142 conservation 0.0435 index 141 residue id #1/A:143 conservation 0.087 index 142 residue id #1/A:144 conservation 0.1739 index 143 residue id #1/A:145 conservation 0.2174 index 144 residue id #1/A:146 conservation 0.1739 index 145 residue id #1/A:147 conservation 0.087 index 146 residue id #1/A:148 conservation 0.0435 index 147 residue id #1/A:149 conservation 0.0435 index 148 residue id #1/A:150 conservation 0.6087 index 149 residue id #1/A:151 conservation 0.2174 index 150 residue id #1/A:152 conservation 1.0 index 151 residue id #1/A:153 conservation 0.4783 index 152 residue id #1/A:154 conservation 0.4348 index 153 residue id #1/A:155 conservation 0.913 index 154 residue id #1/A:156 conservation 0.9565 index 155 residue id #1/A:157 conservation 0.2609 index 156 residue id #1/A:158 conservation 0.1739 index 157 residue id #1/A:159 conservation 0.8261 index 158 residue id #1/A:160 conservation 0.7826 index 159 residue id #1/A:161 conservation 0.8696 index 160 residue id #1/A:162 conservation 0.2609 index 161 residue id #1/A:163 conservation 0.7826 index 162 residue id #1/A:164 conservation 1.0 index 163 residue id #1/A:165 conservation 1.0 index 164 residue id #1/A:166 conservation 0.3043 index 165 residue id #1/A:167 conservation 0.3478 index 166 residue id #1/A:168 conservation 0.2609 index 167 residue id #1/A:169 conservation 0.0435 index 168 residue id #1/A:170 conservation 0.2174 index 169 residue id #1/A:171 conservation 0.0435 index 170 residue id #1/A:172 conservation 0.1304 index 171 residue id #1/A:173 conservation 0.0435 index 172 residue id #1/A:174 conservation 0.1739 index 173 residue id #1/A:175 conservation 0.087 index 174 residue id #1/A:176 conservation 0.087 index 175 residue id #1/A:177 conservation 0.1739 index 176 residue id #1/A:178 conservation 0.2609 index 177 residue id #1/A:179 conservation 0.087 index 178 residue id #1/A:180 conservation 0.0435 index 179 residue id #1/A:181 conservation 0.087 index 180 residue id #1/A:182 conservation 0.6522 index 181 residue id #1/A:183 conservation 0.0435 index 182 residue id #1/A:184 conservation 0.2174 index 183 residue id #1/A:185 conservation 0.1304 index 184 residue id #1/A:186 conservation 0.087 index 185 residue id #1/A:187 conservation 0.0435 index 186 residue id #1/A:188 conservation 0.7391 index 187 residue id #1/A:189 conservation 0.1304 index 188 residue id #1/A:190 conservation 0.087 index 189 residue id #1/A:191 conservation 0.8696 index 190 residue id #1/A:192 conservation 0.5217 index 191 residue id #1/A:193 conservation 0.2609 index 192 residue id #1/A:194 conservation 0.087 index 193 residue id #1/A:195 conservation 0.3478 index 194 residue id #1/A:196 conservation 0.3043 index 195 residue id #1/A:197 conservation 0.7391 index 196 residue id #1/A:198 conservation 0.6957 index 197 residue id #1/A:199 conservation 0.5652 index 198 residue id #1/A:200 conservation 0.4348 index 199 residue id #1/A:201 conservation 0.1304 index 200 residue id #1/A:202 conservation 0.3043 index 201 residue id #1/A:203 conservation 0.3478 index 202 residue id #1/A:204 conservation 0.7391 index 203 residue id #1/A:205 conservation 0.6087 index 204 residue id #1/A:206 conservation 0.6522 index 205 residue id #1/A:207 conservation 0.0435 index 206 residue id #1/A:208 conservation 0.1739 index 207 residue id #1/A:209 conservation 0.4348 index 208 residue id #1/A:210 conservation 0.8696 index 209 residue id #1/A:211 conservation 0.8696 index 210 residue id #1/A:212 conservation 0.5217 index 211 residue id #1/A:213 conservation 0.5217 index 212 residue id #1/A:214 conservation 0.1739 index 213 residue id #1/A:215 conservation 0.5652 index 214 residue id #1/A:216 conservation 0.8261 index 215 residue id #1/A:217 conservation 0.6957 index 216 residue id #1/A:218 conservation 0.1304 index 217 residue id #1/A:219 conservation 0.2174 index 218 residue id #1/A:220 conservation 0.087 index 219 residue id #1/A:221 conservation 0.0435 index 220 residue id #1/A:222 conservation 0.087 index 221 residue id #1/A:223 conservation 0.1304 index 222 residue id #1/A:224 conservation 0.1739 index 223 residue id #1/A:225 conservation 0.1304 index 224 residue id #1/A:226 conservation 0.3043 index 225 residue id #1/A:227 conservation 0.087 index 226 residue id #1/A:228 conservation 0.087 index 227 residue id #1/A:229 conservation 0.3478 index 228 residue id #1/A:230 conservation 0.5652 index 229 residue id #1/A:231 conservation 0.3043 index 230 residue id #1/A:232 conservation 0.087 index 231 residue id #1/A:233 conservation 0.5652 index 232 residue id #1/A:234 conservation 0.8261 index 233 residue id #1/A:235 conservation 0.4783 index 234 residue id #1/A:236 conservation 0.2174 index 235 residue id #1/A:237 conservation 0.8261 index 236 residue id #1/A:238 conservation 0.8261 index 237 residue id #1/A:239 conservation 0.2174 index 238 residue id #1/A:240 conservation 0.0435 index 239 residue id #1/A:241 conservation 0.2609 index 240 residue id #1/A:242 conservation 0.5217 index 241 residue id #1/A:243 conservation 0.7391 index 242 residue id #1/A:244 conservation 0.6522 index 243 residue id #1/A:245 conservation 0.6522 index 244 residue id #1/A:246 conservation 0.6957 index 245 residue id #1/A:247 conservation 0.1304 index 246 residue id #1/A:248 conservation 0.0435 index 247 residue id #1/A:249 conservation 0.1739 index 248 residue id #1/A:250 conservation 0.3043 index 249 residue id #1/A:251 conservation 0.3043 index 250 residue id #1/A:252 conservation 0.1304 index 251 residue id #1/A:253 conservation 0.1739 index 252 residue id #1/A:254 conservation 0.2609 index 253 residue id #1/A:255 conservation 0.1304 index 254 residue id #1/A:256 conservation 0.8696 index 255 residue id #1/A:257 conservation 0.6087 index 256 residue id #1/A:258 conservation 0.7826 index 257 residue id #1/A:259 conservation 0.3043 index 258 residue id #1/A:260 conservation 0.087 index 259 residue id #1/A:261 conservation 0.2174 index 260 residue id #1/A:262 conservation 0.8696 index 261 residue id #1/A:263 conservation 0.2174 index 262 residue id #1/A:264 conservation 0.1739 index 263 residue id #1/A:265 conservation 0.2609 index 264 residue id #1/A:266 conservation 0.4348 index 265 residue id #1/A:267 conservation 0.1304 index 266 residue id #1/A:268 conservation 0.087 index 267 residue id #1/A:269 conservation 0.3043 index 268 residue id #1/A:270 conservation 0.087 index 269 residue id #1/A:271 conservation 0.087 index 270 residue id #1/A:272 conservation 0.6957 index 271 residue id #1/A:273 conservation 0.6087 index 272 residue id #1/A:274 conservation 0.8261 index 273 residue id #1/A:275 conservation 0.2609 index 274 residue id #1/A:276 conservation 0.087 index 275 residue id #1/A:277 conservation 0.4348 index 276 residue id #1/A:278 conservation 0.1739 index 277 residue id #1/A:279 conservation 0.1739 index 278 residue id #1/A:280 conservation 0.4783 index 279 residue id #1/A:281 conservation 0.7826 index 280 residue id #1/A:282 conservation 0.3478 index 281 residue id #1/A:283 conservation 0.5652 index 282 residue id #1/A:284 conservation 0.2174 index 283 residue id #1/A:285 conservation 0.1304 index 284 residue id #1/A:286 conservation 0.0435 index 285 residue id #1/A:287 conservation 0.1304 index 286 residue id #1/A:288 conservation 0.2609 index 287 residue id #1/A:289 conservation 0.5652 index 288 residue id #1/A:290 conservation 0.7391 index 289 residue id #1/A:291 conservation 0.6522 index 290 residue id #1/A:292 conservation 0.8261 index 291 residue id #1/A:293 conservation 0.2609 index 292 residue id #1/A:294 conservation 0.2609 index 293 residue id #1/A:295 conservation 0.1739 index 294 residue id #1/A:296 conservation 0.1304 index 295 residue id #1/A:297 conservation 0.1739 index 296 residue id #1/A:298 conservation 0.1304 index 297 residue id #1/A:299 conservation 0.1304 index 298 residue id #1/A:300 conservation 0.6522 index 299 residue id #1/A:301 conservation 0.6522 index 300 residue id #1/A:302 conservation 0.6087 index 301 residue id #1/A:303 conservation 0.6087 index 302 residue id #1/A:304 conservation 0.8261 index 303 residue id #1/A:305 conservation 0.087 index 304 residue id #1/A:306 conservation 0.087 index 305 residue id #1/A:307 conservation 0.3043 index 306 residue id #1/A:308 conservation 0.2174 index 307 residue id #1/A:309 conservation 0.6087 index 308 residue id #1/A:310 conservation 0.6957 index 309 residue id #1/A:311 conservation 0.7391 index 310 residue id #1/A:312 conservation 0.3478 index 311 residue id #1/A:313 conservation 0.5652 index 312 residue id #1/A:314 conservation 0.5652 index 313 residue id #1/A:315 conservation 0.087 index 314 residue id #1/A:316 conservation 0.0435 index 315 residue id #1/A:317 conservation 0.2609 index 316 residue id #1/A:318 conservation 0.1304 index 317 residue id #1/A:319 conservation 0.4783 index 318 residue id #1/A:320 conservation 0.2174 index 319 residue id #1/A:321 conservation 0.0435 index 320 residue id #1/A:322 conservation 0.5217 index 321 residue id #1/A:323 conservation 0.1739 index 322 residue id #1/A:324 conservation 0.8261 index 323 residue id #1/A:325 conservation 0.2174 index 324 residue id #1/A:326 conservation 0.1739 index 325 residue id #1/A:327 conservation 0.5652 index 326 residue id #1/A:328 conservation 0.1739 index 327 residue id #1/A:329 conservation 0.087 index 328 residue id #1/A:330 conservation 0.2609 index 329 residue id #1/A:331 conservation 0.4783 index 330 residue id #1/A:332 conservation 0.3478 index 331 residue id #1/A:333 conservation 0.7826 index 332 residue id #1/A:334 conservation 0.3043 index 333 residue id #1/A:335 conservation 0.087 index 334 residue id #1/A:336 conservation 0.1739 index 335 residue id #1/A:337 conservation 0.2609 index 336 residue id #1/A:338 conservation 0.2609 index 337 residue id #1/A:339 conservation 0.5217 index 338 residue id #1/A:340 conservation 0.4783 index 339 residue id #1/A:341 conservation 0.3913 index 340 residue id #1/A:342 conservation 0.087 index 341 residue id #1/A:343 conservation 0.2174 index 342 residue id #1/A:344 conservation 0.0435 index 343 residue id #1/A:345 conservation 0.087 index 344 residue id #1/A:346 conservation 0.5217 index 345 residue id #1/A:347 conservation 0.3043 index 346 residue id #1/A:348 conservation 0.2174 index 347 residue id #1/A:349 conservation 0.6957 index 348 residue id #1/A:350 conservation 0.8261 index 349 residue id #1/A:351 conservation 0.5652 index 350 residue id #1/A:352 conservation 0.1304 index 351 residue id #1/A:353 conservation 0.7826 index 352 residue id #1/A:354 conservation 0.1739 index 353 residue id #1/A:355 conservation 0.087 index 354 residue id #1/A:356 conservation 0.2609 index 355 residue id #1/A:357 conservation 0.1739 index 356 residue id #1/A:358 conservation 0.2174 index 357 residue id #1/A:359 conservation 0.4348 index 358 residue id #1/A:360 conservation 0.4783 index 359 residue id #1/A:361 conservation 0.1739 index 360 residue id #1/A:362 conservation 0.1304 index 361 residue id #1/A:363 conservation 0.1304 index 362 residue id #1/A:364 conservation 0.087 index 363 residue id #1/A:365 conservation 0.0435 index 364 residue id #1/A:366 conservation 0.2174 index 365 residue id #1/A:367 conservation 0.2174 index 366 residue id #1/A:368 conservation 0.087 index 367 residue id #1/A:369 conservation 0.087 index 368 residue id #1/A:370 conservation 0.1739 index 369 residue id #1/A:371 conservation 0.2174 index 370 residue id #1/A:372 conservation 0.2609 index 371 residue id #1/A:373 conservation 0.3043 index 372 residue id #1/A:374 conservation 0.2609 index 373 residue id #1/A:375 conservation 0.6522 index 374 residue id #1/A:376 conservation 0.3478 index 375 residue id #1/A:377 conservation 0.087 index 376 residue id #1/A:378 conservation 0.8261 index 377 > open /Users/paulminges/Downloads/conservation.defattr Summary of feedback from opening /Users/paulminges/Downloads/conservation.defattr --- note | Assigned attribute 'conservation' to 783 residues using match mode: any > open /Users/paulminges/Downloads/conservation.defattr Summary of feedback from opening /Users/paulminges/Downloads/conservation.defattr --- note | Assigned attribute 'conservation' to 783 residues using match mode: any > info residues #1 attribute conservation residue id #1/A:1 conservation 0.261 index 0 residue id #1/A:2 conservation 0.217 index 1 residue id #1/A:3 conservation 0.13 index 2 residue id #1/A:4 conservation 0.304 index 3 residue id #1/A:5 conservation 0.478 index 4 residue id #1/A:6 conservation 0.348 index 5 residue id #1/A:7 conservation 0.043 index 6 residue id #1/A:8 conservation 0.391 index 7 residue id #1/A:9 conservation 0.652 index 8 residue id #1/A:10 conservation 0.957 index 9 residue id #1/A:11 conservation 0.261 index 10 residue id #1/A:12 conservation 0.609 index 11 residue id #1/A:13 conservation 0.217 index 12 residue id #1/A:14 conservation 0.348 index 13 residue id #1/A:15 conservation 0.696 index 14 residue id #1/A:16 conservation 0.87 index 15 residue id #1/A:17 conservation 0.739 index 16 residue id #1/A:18 conservation 0.783 index 17 residue id #1/A:19 conservation 0.826 index 18 residue id #1/A:20 conservation 0.217 index 19 residue id #1/A:21 conservation 0.652 index 20 residue id #1/A:22 conservation 0.652 index 21 residue id #1/A:23 conservation 0.609 index 22 residue id #1/A:24 conservation 0.522 index 23 residue id #1/A:25 conservation 0.435 index 24 residue id #1/A:26 conservation 0.652 index 25 residue id #1/A:27 conservation 0.304 index 26 residue id #1/A:28 conservation 0.217 index 27 residue id #1/A:29 conservation 0.13 index 28 residue id #1/A:30 conservation 0.261 index 29 residue id #1/A:31 conservation 0.652 index 30 residue id #1/A:32 conservation 0.391 index 31 residue id #1/A:33 conservation 0.087 index 32 residue id #1/A:34 conservation 0.739 index 33 residue id #1/A:35 conservation 0.391 index 34 residue id #1/A:36 conservation 0.174 index 35 residue id #1/A:37 conservation 0.304 index 36 residue id #1/A:38 conservation 0.957 index 37 residue id #1/A:39 conservation 0.348 index 38 residue id #1/A:40 conservation 0.217 index 39 residue id #1/A:41 conservation 0.522 index 40 residue id #1/A:42 conservation 1.0 index 41 residue id #1/A:43 conservation 0.174 index 42 residue id #1/A:44 conservation 0.13 index 43 residue id #1/A:45 conservation 0.696 index 44 residue id #1/A:46 conservation 0.652 index 45 residue id #1/A:47 conservation 0.913 index 46 residue id #1/A:48 conservation 0.957 index 47 residue id #1/A:49 conservation 0.391 index 48 residue id #1/A:50 conservation 1.0 index 49 residue id #1/A:51 conservation 0.174 index 50 residue id #1/A:52 conservation 0.304 index 51 residue id #1/A:53 conservation 0.13 index 52 residue id #1/A:54 conservation 0.13 index 53 residue id #1/A:55 conservation 0.261 index 54 residue id #1/A:56 conservation 0.609 index 55 residue id #1/A:57 conservation 0.348 index 56 residue id #1/A:58 conservation 0.826 index 57 residue id #1/A:59 conservation 1.0 index 58 residue id #1/A:60 conservation 0.957 index 59 residue id #1/A:61 conservation 0.522 index 60 residue id #1/A:62 conservation 0.739 index 61 residue id #1/A:63 conservation 0.304 index 62 residue id #1/A:64 conservation 1.0 index 63 residue id #1/A:65 conservation 0.435 index 64 residue id #1/A:66 conservation 0.13 index 65 residue id #1/A:67 conservation 0.087 index 66 residue id #1/A:68 conservation 0.217 index 67 residue id #1/A:69 conservation 0.957 index 68 residue id #1/A:70 conservation 0.652 index 69 residue id #1/A:71 conservation 0.87 index 70 residue id #1/A:72 conservation 0.174 index 71 residue id #1/A:73 conservation 0.391 index 72 residue id #1/A:74 conservation 0.043 index 73 residue id #1/A:75 conservation 1.0 index 74 residue id #1/A:76 conservation 1.0 index 75 residue id #1/A:77 conservation 1.0 index 76 residue id #1/A:78 conservation 0.609 index 77 residue id #1/A:79 conservation 0.696 index 78 residue id #1/A:80 conservation 0.043 index 79 residue id #1/A:81 conservation 0.043 index 80 residue id #1/A:82 conservation 0.913 index 81 residue id #1/A:83 conservation 0.913 index 82 residue id #1/A:84 conservation 1.0 index 83 residue id #1/A:85 conservation 1.0 index 84 residue id #1/A:86 conservation 0.261 index 85 residue id #1/A:87 conservation 0.174 index 86 residue id #1/A:88 conservation 0.957 index 87 residue id #1/A:89 conservation 0.739 index 88 residue id #1/A:90 conservation 0.435 index 89 residue id #1/A:91 conservation 0.609 index 90 residue id #1/A:92 conservation 0.217 index 91 residue id #1/A:93 conservation 0.043 index 92 residue id #1/A:94 conservation 1.0 index 93 residue id #1/A:95 conservation 0.826 index 94 residue id #1/A:96 conservation 0.13 index 95 residue id #1/A:97 conservation 1.0 index 96 residue id #1/A:98 conservation 1.0 index 97 residue id #1/A:99 conservation 1.0 index 98 residue id #1/A:100 conservation 0.391 index 99 residue id #1/A:101 conservation 0.739 index 100 residue id #1/A:102 conservation 1.0 index 101 residue id #1/A:103 conservation 0.087 index 102 residue id #1/A:104 conservation 0.957 index 103 residue id #1/A:105 conservation 0.826 index 104 residue id #1/A:106 conservation 0.087 index 105 residue id #1/A:107 conservation 0.13 index 106 residue id #1/A:108 conservation 0.043 index 107 residue id #1/A:109 conservation 0.043 index 108 residue id #1/A:110 conservation 0.87 index 109 residue id #1/A:111 conservation 0.261 index 110 residue id #1/A:112 conservation 0.565 index 111 residue id #1/A:113 conservation 0.913 index 112 residue id #1/A:114 conservation 0.739 index 113 residue id #1/A:115 conservation 0.565 index 114 residue id #1/A:116 conservation 0.87 index 115 residue id #1/A:117 conservation 0.957 index 116 residue id #1/A:118 conservation 0.565 index 117 residue id #1/A:119 conservation 1.0 index 118 residue id #1/A:120 conservation 1.0 index 119 residue id #1/A:121 conservation 0.304 index 120 residue id #1/A:122 conservation 1.0 index 121 residue id #1/A:123 conservation 1.0 index 122 residue id #1/A:124 conservation 0.348 index 123 residue id #1/A:125 conservation 0.913 index 124 residue id #1/A:126 conservation 1.0 index 125 residue id #1/A:127 conservation 0.957 index 126 residue id #1/A:128 conservation 0.087 index 127 residue id #1/A:129 conservation 1.0 index 128 residue id #1/A:130 conservation 0.87 index 129 residue id #1/A:131 conservation 0.13 index 130 residue id #1/A:132 conservation 0.174 index 131 residue id #1/A:133 conservation 0.13 index 132 residue id #1/A:134 conservation 0.13 index 133 residue id #1/A:135 conservation 0.826 index 134 residue id #1/A:136 conservation 0.565 index 135 residue id #1/A:137 conservation 1.0 index 136 residue id #1/A:138 conservation 0.348 index 137 residue id #1/A:139 conservation 0.913 index 138 residue id #1/A:140 conservation 0.087 index 139 residue id #1/A:141 conservation 0.957 index 140 residue id #1/A:142 conservation 0.043 index 141 residue id #1/A:143 conservation 0.087 index 142 residue id #1/A:144 conservation 0.174 index 143 residue id #1/A:145 conservation 0.217 index 144 residue id #1/A:146 conservation 0.174 index 145 residue id #1/A:147 conservation 0.087 index 146 residue id #1/A:148 conservation 0.043 index 147 residue id #1/A:149 conservation 0.043 index 148 residue id #1/A:150 conservation 0.609 index 149 residue id #1/A:151 conservation 0.217 index 150 residue id #1/A:152 conservation 1.0 index 151 residue id #1/A:153 conservation 0.478 index 152 residue id #1/A:154 conservation 0.435 index 153 residue id #1/A:155 conservation 0.913 index 154 residue id #1/A:156 conservation 0.957 index 155 residue id #1/A:157 conservation 0.261 index 156 residue id #1/A:158 conservation 0.174 index 157 residue id #1/A:159 conservation 0.826 index 158 residue id #1/A:160 conservation 0.783 index 159 residue id #1/A:161 conservation 0.87 index 160 residue id #1/A:162 conservation 0.261 index 161 residue id #1/A:163 conservation 0.783 index 162 residue id #1/A:164 conservation 1.0 index 163 residue id #1/A:165 conservation 1.0 index 164 residue id #1/A:166 conservation 0.304 index 165 residue id #1/A:167 conservation 0.348 index 166 residue id #1/A:168 conservation 0.261 index 167 residue id #1/A:169 conservation 0.043 index 168 residue id #1/A:170 conservation 0.217 index 169 residue id #1/A:171 conservation 0.043 index 170 residue id #1/A:172 conservation 0.13 index 171 residue id #1/A:173 conservation 0.043 index 172 residue id #1/A:174 conservation 0.174 index 173 residue id #1/A:175 conservation 0.087 index 174 residue id #1/A:176 conservation 0.087 index 175 residue id #1/A:177 conservation 0.174 index 176 residue id #1/A:178 conservation 0.261 index 177 residue id #1/A:179 conservation 0.087 index 178 residue id #1/A:180 conservation 0.043 index 179 residue id #1/A:181 conservation 0.087 index 180 residue id #1/A:182 conservation 0.652 index 181 residue id #1/A:183 conservation 0.043 index 182 residue id #1/A:184 conservation 0.217 index 183 residue id #1/A:185 conservation 0.13 index 184 residue id #1/A:186 conservation 0.087 index 185 residue id #1/A:187 conservation 0.043 index 186 residue id #1/A:188 conservation 0.739 index 187 residue id #1/A:189 conservation 0.13 index 188 residue id #1/A:190 conservation 0.087 index 189 residue id #1/A:191 conservation 0.87 index 190 residue id #1/A:192 conservation 0.522 index 191 residue id #1/A:193 conservation 0.261 index 192 residue id #1/A:194 conservation 0.087 index 193 residue id #1/A:195 conservation 0.348 index 194 residue id #1/A:196 conservation 0.304 index 195 residue id #1/A:197 conservation 0.739 index 196 residue id #1/A:198 conservation 0.696 index 197 residue id #1/A:199 conservation 0.565 index 198 residue id #1/A:200 conservation 0.435 index 199 residue id #1/A:201 conservation 0.13 index 200 residue id #1/A:202 conservation 0.304 index 201 residue id #1/A:203 conservation 0.348 index 202 residue id #1/A:204 conservation 0.739 index 203 residue id #1/A:205 conservation 0.609 index 204 residue id #1/A:206 conservation 0.652 index 205 residue id #1/A:207 conservation 0.043 index 206 residue id #1/A:208 conservation 0.174 index 207 residue id #1/A:209 conservation 0.435 index 208 residue id #1/A:210 conservation 0.87 index 209 residue id #1/A:211 conservation 0.87 index 210 residue id #1/A:212 conservation 0.522 index 211 residue id #1/A:213 conservation 0.522 index 212 residue id #1/A:214 conservation 0.174 index 213 residue id #1/A:215 conservation 0.565 index 214 residue id #1/A:216 conservation 0.826 index 215 residue id #1/A:217 conservation 0.696 index 216 residue id #1/A:218 conservation 0.13 index 217 residue id #1/A:219 conservation 0.217 index 218 residue id #1/A:220 conservation 0.087 index 219 residue id #1/A:221 conservation 0.043 index 220 residue id #1/A:222 conservation 0.087 index 221 residue id #1/A:223 conservation 0.13 index 222 residue id #1/A:224 conservation 0.174 index 223 residue id #1/A:225 conservation 0.13 index 224 residue id #1/A:226 conservation 0.304 index 225 residue id #1/A:227 conservation 0.087 index 226 residue id #1/A:228 conservation 0.087 index 227 residue id #1/A:229 conservation 0.348 index 228 residue id #1/A:230 conservation 0.565 index 229 residue id #1/A:231 conservation 0.304 index 230 residue id #1/A:232 conservation 0.087 index 231 residue id #1/A:233 conservation 0.565 index 232 residue id #1/A:234 conservation 0.826 index 233 residue id #1/A:235 conservation 0.478 index 234 residue id #1/A:236 conservation 0.217 index 235 residue id #1/A:237 conservation 0.826 index 236 residue id #1/A:238 conservation 0.826 index 237 residue id #1/A:239 conservation 0.217 index 238 residue id #1/A:240 conservation 0.043 index 239 residue id #1/A:241 conservation 0.261 index 240 residue id #1/A:242 conservation 0.522 index 241 residue id #1/A:243 conservation 0.739 index 242 residue id #1/A:244 conservation 0.652 index 243 residue id #1/A:245 conservation 0.652 index 244 residue id #1/A:246 conservation 0.696 index 245 residue id #1/A:247 conservation 0.13 index 246 residue id #1/A:248 conservation 0.043 index 247 residue id #1/A:249 conservation 0.174 index 248 residue id #1/A:250 conservation 0.304 index 249 residue id #1/A:251 conservation 0.304 index 250 residue id #1/A:252 conservation 0.13 index 251 residue id #1/A:253 conservation 0.174 index 252 residue id #1/A:254 conservation 0.261 index 253 residue id #1/A:255 conservation 0.13 index 254 residue id #1/A:256 conservation 0.87 index 255 residue id #1/A:257 conservation 0.609 index 256 residue id #1/A:258 conservation 0.783 index 257 residue id #1/A:259 conservation 0.304 index 258 residue id #1/A:260 conservation 0.087 index 259 residue id #1/A:261 conservation 0.217 index 260 residue id #1/A:262 conservation 0.87 index 261 residue id #1/A:263 conservation 0.217 index 262 residue id #1/A:264 conservation 0.174 index 263 residue id #1/A:265 conservation 0.261 index 264 residue id #1/A:266 conservation 0.435 index 265 residue id #1/A:267 conservation 0.13 index 266 residue id #1/A:268 conservation 0.087 index 267 residue id #1/A:269 conservation 0.304 index 268 residue id #1/A:270 conservation 0.087 index 269 residue id #1/A:271 conservation 0.087 index 270 residue id #1/A:272 conservation 0.696 index 271 residue id #1/A:273 conservation 0.609 index 272 residue id #1/A:274 conservation 0.826 index 273 residue id #1/A:275 conservation 0.261 index 274 residue id #1/A:276 conservation 0.087 index 275 residue id #1/A:277 conservation 0.435 index 276 residue id #1/A:278 conservation 0.174 index 277 residue id #1/A:279 conservation 0.174 index 278 residue id #1/A:280 conservation 0.478 index 279 residue id #1/A:281 conservation 0.783 index 280 residue id #1/A:282 conservation 0.348 index 281 residue id #1/A:283 conservation 0.565 index 282 residue id #1/A:284 conservation 0.217 index 283 residue id #1/A:285 conservation 0.13 index 284 residue id #1/A:286 conservation 0.043 index 285 residue id #1/A:287 conservation 0.13 index 286 residue id #1/A:288 conservation 0.261 index 287 residue id #1/A:289 conservation 0.565 index 288 residue id #1/A:290 conservation 0.739 index 289 residue id #1/A:291 conservation 0.652 index 290 residue id #1/A:292 conservation 0.826 index 291 residue id #1/A:293 conservation 0.261 index 292 residue id #1/A:294 conservation 0.261 index 293 residue id #1/A:295 conservation 0.174 index 294 residue id #1/A:296 conservation 0.13 index 295 residue id #1/A:297 conservation 0.174 index 296 residue id #1/A:298 conservation 0.13 index 297 residue id #1/A:299 conservation 0.13 index 298 residue id #1/A:300 conservation 0.652 index 299 residue id #1/A:301 conservation 0.652 index 300 residue id #1/A:302 conservation 0.609 index 301 residue id #1/A:303 conservation 0.609 index 302 residue id #1/A:304 conservation 0.826 index 303 residue id #1/A:305 conservation 0.087 index 304 residue id #1/A:306 conservation 0.087 index 305 residue id #1/A:307 conservation 0.304 index 306 residue id #1/A:308 conservation 0.217 index 307 residue id #1/A:309 conservation 0.609 index 308 residue id #1/A:310 conservation 0.696 index 309 residue id #1/A:311 conservation 0.739 index 310 residue id #1/A:312 conservation 0.348 index 311 residue id #1/A:313 conservation 0.565 index 312 residue id #1/A:314 conservation 0.565 index 313 residue id #1/A:315 conservation 0.087 index 314 residue id #1/A:316 conservation 0.043 index 315 residue id #1/A:317 conservation 0.261 index 316 residue id #1/A:318 conservation 0.13 index 317 residue id #1/A:319 conservation 0.478 index 318 residue id #1/A:320 conservation 0.217 index 319 residue id #1/A:321 conservation 0.043 index 320 residue id #1/A:322 conservation 0.522 index 321 residue id #1/A:323 conservation 0.174 index 322 residue id #1/A:324 conservation 0.826 index 323 residue id #1/A:325 conservation 0.217 index 324 residue id #1/A:326 conservation 0.174 index 325 residue id #1/A:327 conservation 0.565 index 326 residue id #1/A:328 conservation 0.174 index 327 residue id #1/A:329 conservation 0.087 index 328 residue id #1/A:330 conservation 0.261 index 329 residue id #1/A:331 conservation 0.478 index 330 residue id #1/A:332 conservation 0.348 index 331 residue id #1/A:333 conservation 0.783 index 332 residue id #1/A:334 conservation 0.304 index 333 residue id #1/A:335 conservation 0.087 index 334 residue id #1/A:336 conservation 0.174 index 335 residue id #1/A:337 conservation 0.261 index 336 residue id #1/A:338 conservation 0.261 index 337 residue id #1/A:339 conservation 0.522 index 338 residue id #1/A:340 conservation 0.478 index 339 residue id #1/A:341 conservation 0.391 index 340 residue id #1/A:342 conservation 0.087 index 341 residue id #1/A:343 conservation 0.217 index 342 residue id #1/A:344 conservation 0.043 index 343 residue id #1/A:345 conservation 0.087 index 344 residue id #1/A:346 conservation 0.522 index 345 residue id #1/A:347 conservation 0.304 index 346 residue id #1/A:348 conservation 0.217 index 347 residue id #1/A:349 conservation 0.696 index 348 residue id #1/A:350 conservation 0.826 index 349 residue id #1/A:351 conservation 0.565 index 350 residue id #1/A:352 conservation 0.13 index 351 residue id #1/A:353 conservation 0.783 index 352 residue id #1/A:354 conservation 0.174 index 353 residue id #1/A:355 conservation 0.087 index 354 residue id #1/A:356 conservation 0.261 index 355 residue id #1/A:357 conservation 0.174 index 356 residue id #1/A:358 conservation 0.217 index 357 residue id #1/A:359 conservation 0.435 index 358 residue id #1/A:360 conservation 0.478 index 359 residue id #1/A:361 conservation 0.174 index 360 residue id #1/A:362 conservation 0.13 index 361 residue id #1/A:363 conservation 0.13 index 362 residue id #1/A:364 conservation 0.087 index 363 residue id #1/A:365 conservation 0.043 index 364 residue id #1/A:366 conservation 0.217 index 365 residue id #1/A:367 conservation 0.217 index 366 residue id #1/A:368 conservation 0.087 index 367 residue id #1/A:369 conservation 0.087 index 368 residue id #1/A:370 conservation 0.174 index 369 residue id #1/A:371 conservation 0.217 index 370 residue id #1/A:372 conservation 0.261 index 371 residue id #1/A:373 conservation 0.304 index 372 residue id #1/A:374 conservation 0.261 index 373 residue id #1/A:375 conservation 0.652 index 374 residue id #1/A:376 conservation 0.348 index 375 residue id #1/A:377 conservation 0.087 index 376 residue id #1/A:378 conservation 0.826 index 377 > ui tool show ""Render/Select by Attribute"" > color byattribute r:conservation #1 target cabs palette > 0.0455251,red:0.524025,white:1,blue 3054 atoms, 378 residues, atom conservation range 0.043 to 1 > ui tool show ""Scale Bar"" > scalebar > scalebar off > ui tool show ""Render/Select by Attribute"" > key accent-3 :0.04 :0.52 :1.00 showTool true > ui mousemode right ""color key"" > color byattribute r:conservation #1 target cabs palette > 0.043,#7fc97f:0.5215,#beaed4:1,#fdc086 3054 atoms, 378 residues, atom conservation range 0.043 to 1 > select subtract #1 Nothing selected > save ""/Users/paulminges/Library/CloudStorage/OneDrive- > Personal/Documents/ResearchStuff/AG-Eder/2. Research/5. Endometriosis/1. > Target Development/Structure_Analysis/MMP-10.cxs"" > select add #2 11423 atoms, 3163 bonds, 405 residues, 31 models selected > ui tool show ""Render/Select by Attribute"" > ui tool show ""Color Key"" > ui mousemode right ""color key"" > ui tool show ""Color Key"" > ui mousemode right ""color key"" > ui tool show ""Color Key"" > ui mousemode right ""color key"" > select subtract #2 27 models selected > select add #2 11423 atoms, 3163 bonds, 405 residues, 31 models selected > ui tool show ""Color Key"" > ui mousemode right ""color key"" > key accent-3 :0.04 :0.52 :1.00 > key pos 0.69000,0.08000 > key pos 0.68000,0.08000 > key pos 0.67000,0.08000 > key pos 0.66000,0.08000 > key pos 0.65000,0.08000 > key pos 0.64000,0.08000 > key pos 0.63000,0.08000 > key pos 0.62000,0.08000 > key pos 0.61000,0.08000 > key pos 0.60000,0.08000 > key pos 0.59000,0.08000 > key pos 0.58000,0.08000 > key pos 0.57000,0.08000 > key pos 0.56000,0.08000 > key pos 0.55000,0.08000 > key pos 0.54000,0.08000 > key pos 0.53000,0.08000 > key pos 0.52000,0.08000 > key pos 0.51000,0.08000 > key pos 0.50000,0.08000 > key pos 0.49000,0.08000 > key pos 0.48000,0.08000 > key pos 0.47000,0.08000 > key pos 0.46000,0.08000 > key pos 0.45000,0.08000 > key pos 0.44000,0.08000 > key pos 0.43000,0.08000 > key pos 0.42000,0.08000 > key pos 0.41000,0.08000 > key pos 0.40000,0.08000 > key pos 0.39000,0.08000 > key pos 0.38000,0.08000 > key pos 0.37000,0.08000 > key pos 0.36000,0.08000 > key pos 0.35000,0.08000 > key pos 0.34000,0.08000 > key pos 0.33000,0.08000 > key pos 0.32000,0.08000 > key pos 0.31000,0.08000 > key pos 0.30000,0.08000 > key pos 0.29000,0.08000 > key pos 0.28000,0.08000 > key pos 0.28000,0.07000 > key pos 0.28000,0.06000 > key pos 0.28000,0.05000 > key pos 0.28000,0.04000 > key pos 0.28000,0.05000 > key pos 0.28000,0.06000 > key pos 0.28000,0.07000 > key pos 0.28000,0.08000 > key pos 0.28000,0.09000 > key pos 0.28000,0.10000 > key pos 0.28000,0.09000 > select subtract #2 27 models selected ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.11.1 (2026-01-23) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 90.5 OpenGL renderer: Apple M4 OpenGL vendor: Apple Python: 3.11.9 Locale: en_US.UTF-8 Qt version: PyQt6 6.9.1, Qt 6.9.0 Qt runtime version: 6.9.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Air Model Identifier: Mac16,13 Model Number: MC6L4D/A Chip: Apple M4 Total Number of Cores: 10 (4 performance and 6 efficiency) Memory: 24 GB System Firmware Version: 13822.61.10 OS Loader Version: 13822.61.10 Software: System Software Overview: System Version: macOS 26.2 (25C56) Kernel Version: Darwin 25.2.0 Time since boot: 11 days, 17 hours, 40 minutes Graphics/Displays: Apple M4: Chipset Model: Apple M4 Type: GPU Bus: Built-In Total Number of Cores: 10 Vendor: Apple (0x106b) Metal Support: Metal 4 Displays: N27p: Resolution: 5120 x 2880 (5K/UHD+ - Ultra High Definition Plus) UI Looks like: 2560 x 1440 @ 60.00Hz Main Display: Yes Mirror: Off Online: Yes Rotation: Supported Automatically Adjust Brightness: No Color LCD: Display Type: Built-in Liquid Retina Display Resolution: 2880 x 1864 Retina Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: aiohappyeyeballs: 2.6.1 aiohttp: 3.13.1 aiosignal: 1.4.0 alabaster: 1.0.0 annotated-types: 0.7.0 anyio: 4.12.1 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.1 attrs: 25.4.0 babel: 2.17.0 beautifulsoup4: 4.13.5 blockdiag: 3.0.0 blosc2: 3.12.2 build: 1.3.0 certifi: 2025.7.14 cftime: 1.6.5 charset-normalizer: 3.4.4 ChimeraX-AddCharge: 1.5.20 ChimeraX-AddH: 2.2.8 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 3.1.1 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Animations: 1.0 ChimeraX-Aniso: 1.3.2 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.61.4 ChimeraX-AtomicLibrary: 14.2.1 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.1 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.6.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3.0 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.11.1 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.4 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.3 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.4 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.7.3 ChimeraX-Label: 1.2 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.2 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.2.2 ChimeraX-MCopy: 1.0 ChimeraX-MCPServer: 0.1.0 ChimeraX-MDcrds: 2.17.2 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-Minimize: 1.3.2 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.22 ChimeraX-ModelPanel: 1.6 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0.1 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.15.2 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.12 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.5 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.4 ChimeraX-ProfileGrids: 1.4.2 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.5 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.3 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.2 ChimeraX-Scenes: 0.3.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.10 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.17.3 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.49.1 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.2 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDock: 1.5.2 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 click: 8.3.1 colorama: 0.4.6 comm: 0.2.3 contourpy: 1.3.3 coverage: 7.13.1 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.1.4 debugpy: 1.8.19 decorator: 5.2.1 docutils: 0.21.2 executing: 2.2.1 filelock: 3.19.1 fonttools: 4.61.1 frozenlist: 1.8.0 funcparserlib: 2.0.0a0 glfw: 2.10.0 grako: 3.16.5 h11: 0.16.0 h5py: 3.15.1 html2text: 2025.4.15 httpcore: 1.0.9 httpx: 0.28.1 httpx-sse: 0.4.3 idna: 3.11 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 1.4.1 iniconfig: 2.3.0 ipykernel: 6.30.1 ipython: 9.5.0 ipython_pygments_lexers: 1.1.1 ipywidgets: 8.1.8 jedi: 0.19.2 Jinja2: 3.1.6 jsonschema: 4.26.0 jsonschema-specifications: 2025.9.1 jupyter_client: 8.6.3 jupyter_core: 5.9.1 jupyterlab_widgets: 3.0.16 kiwisolver: 1.4.9 line_profiler: 5.0.0 lxml: 6.0.2 lz4: 4.3.2 Markdown: 3.8.2 MarkupSafe: 3.0.3 matplotlib: 3.10.7 matplotlib-inline: 0.2.1 mcp: 1.18.0 msgpack: 1.1.1 multidict: 6.7.0 narwhals: 2.16.0 ndindex: 1.10.1 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.14.1 numpy: 2.4.2 numpy: 1.26.4 OpenMM: 8.2.0 openvr: 1.26.701 packaging: 25.0 ParmEd: 4.2.2 parso: 0.8.5 pep517: 0.13.1 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 11.3.0 pip: 25.2 pkginfo: 1.12.1.2 platformdirs: 4.5.1 plotly: 6.5.2 pluggy: 1.6.0 prompt_toolkit: 3.0.52 propcache: 0.4.1 psutil: 7.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pybind11: 3.0.1 pycollada: 0.8 pydantic: 2.12.5 pydantic-settings: 2.12.0 pydantic_core: 2.41.5 pydicom: 2.4.4 Pygments: 2.18.0 pyKVFinder: 0.9.0 pynmrstar: 3.3.6 pynrrd: 1.0.0 PyOpenGL: 3.1.10 PyOpenGL-accelerate: 3.1.10 pyopenxr: 1.1.4501 pyparsing: 3.3.2 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.9.1 PyQt6-Qt6: 6.9.2 PyQt6-WebEngine-commercial: 6.9.0 PyQt6-WebEngine-Qt6: 6.9.2 PyQt6_sip: 13.10.2 pytest: 9.0.2 pytest-cov: 7.0.0 python-dateutil: 2.9.0.post0 python-dotenv: 1.2.1 python-multipart: 0.0.21 pyzmq: 27.1.0 qtconsole: 5.7.0 QtPy: 2.4.3 qtshim: 1.2 RandomWords: 0.4.0 referencing: 0.37.0 requests: 2.32.5 roman-numerals: 4.1.0 roman-numerals-py: 4.1.0 rpds-py: 0.30.0 scipy: 1.14.0 setuptools: 80.9.0 sfftk-rw: 0.8.1 six: 1.17.0 snowballstemmer: 3.0.1 sortedcontainers: 2.4.0 soupsieve: 2.8.3 Sphinx: 8.2.3 sphinx-autodoc-typehints: 3.2.0 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 sse-starlette: 3.2.0 stack-data: 0.6.3 starlette: 0.52.1 superqt: 0.7.6 tables: 3.10.2 tcia_utils: 1.5.1 tifffile: 2025.3.13 tinyarray: 1.2.5 tomlkit: 0.14.0 tornado: 6.5.4 traitlets: 5.14.3 typing-inspection: 0.4.2 typing_extensions: 4.15.0 urllib3: 2.6.3 uvicorn: 0.40.0 wcwidth: 0.3.2 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 widgetsnbextension: 4.0.15 yarl: 1.22.0 }}} " defect closed normal Graphics nonchimerax all ChimeraX