id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 1945 An RGBA channel for a marker is negative victoria.ruiz.serra@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Linux-4.15.0-48-generic-x86_64-with-debian-buster-sid ChimeraX Version: 0.9 (2019-04-12) Description (Describe the actions that caused this problem to occur here) Log: Startup Messages --- warning | QXcbShmImage: shmget() failed (28: No queda espacio en el dispositivo) for size 7597300 (1853x1025) UCSF ChimeraX version: 0.9 (2019-04-12) © 2016-2019 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX QXcbShmImage: shmget() failed (28: No queda espacio en el dispositivo) for size 149100 (213x175) > help help:user Developer warnings in user commands index: * didn't expect href to be to tools/sequenceviewer.html on line 257 QXcbShmImage: shmget() failed (28: No queda espacio en el dispositivo) for size 2321280 (806x720) QXcbShmImage: shmget() failed (28: No queda espacio en el dispositivo) for size 30348 (281x27) QXcbClipboard: SelectionRequest too old QXcbClipboard: SelectionRequest too old QXcbClipboard: SelectionRequest too old QXcbClipboard: SelectionRequest too old QXcbClipboard: SelectionRequest too old QXcbClipboard: SelectionRequest too old QXcbClipboard: SelectionRequest too old QXcbClipboard: SelectionRequest too old QXcbClipboard: SelectionRequest too old QXcbClipboard: SelectionRequest too old QXcbClipboard: SelectionRequest too old QXcbClipboard: SelectionRequest too old QXcbClipboard: SelectionRequest too old QXcbClipboard: SelectionRequest too 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old QXcbClipboard: SelectionRequest too old QXcbClipboard: SelectionRequest too old QXcbClipboard: SelectionRequest too old QXcbClipboard: SelectionRequest too old QXcbShmImage: shmget() failed (28: No queda espacio en el dispositivo) for size 24200 (121x50) QXcbClipboard: SelectionRequest too old QXcbClipboard: SelectionRequest too old QXcbClipboard: SelectionRequest too old QXcbClipboard: SelectionRequest too old QXcbClipboard: SelectionRequest too old QXcbClipboard: SelectionRequest too old QXcbClipboard: SelectionRequest too old QXcbClipboard: SelectionRequest too old QXcbClipboard: SelectionRequest too old QXcbClipboard: SelectionRequest too old QXcbClipboard: SelectionRequest too old QXcbClipboard: SelectionRequest too old QXcbClipboard: SelectionRequest too old QXcbClipboard: SelectionRequest too old QXcbShmImage: shmget() failed (28: No queda espacio en el dispositivo) for size 126500 (253x125) QXcbShmImage: shmget() failed (28: No queda espacio en el dispositivo) for size 10212 (111x23) QXcbShmImage: shmget() failed (28: No queda espacio en el dispositivo) for size 1228800 (640x480) > open /home/vruizser/Descargas/chr5_OIS_D0_cl1.cmm Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/ui/gui.py"", line 552, in _qt_safe run(session, ""open "" + quote_if_necessary(paths[0])) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/core/commands/run.py"", line 31, in run results = command.run(text, log=log) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/core/commands/cli.py"", line 2628, in run result = ci.function(session, **kw_args) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/core/commands/open.py"", line 41, in open from_database=from_database, ignore_cache=ignore_cache, **kw)) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/core/commands/open.py"", line 117, in open models = handle_unknown_kw(session.models.open, paths, format=format, name=name, **kw) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/core/commands/open.py"", line 62, in handle_unknown_kw return f(*args, **kw) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/core/models.py"", line 598, in open session, filenames, format=format, name=name, **kw) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/core/io.py"", line 477, in open_multiple_data models, status = open_data(session, fspec, format=format, name=name, **kw) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/core/io.py"", line 433, in open_data models, status = open_func(*args, **kw) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/markers/__init__.py"", line 36, in open_file return cmmfiles.read_cmm(session, path) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/markers/cmmfiles.py"", line 7, in read_cmm msets = load_markerset_xml(session, f) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/markers/cmmfiles.py"", line 179, in load_markerset_xml msets = create_marker_sets(session, h.marker_set_tuples) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/markers/cmmfiles.py"", line 208, in create_marker_sets m = ms.create_marker((x,y,z), rgba, radius, id) File ""/usr/lib/ucsf-chimerax-daily/lib/python3.7/site- packages/chimerax/markers/markers.py"", line 24, in create_marker a.color = rgba # 0-255 values File ""cymol.pyx"", line 211, in chimerax.atomic.cymol.CyAtom.color.__set__ OverflowError: can't convert negative value to atomstruct::Rgba::Channel OverflowError: can't convert negative value to atomstruct::Rgba::Channel File ""cymol.pyx"", line 211, in chimerax.atomic.cymol.CyAtom.color.__set__ See log for complete Python traceback. QXcbShmImage: shmget() failed (28: No queda espacio en el dispositivo) for size 720000 (600x300) QXcbShmImage: shmget() failed (28: No queda espacio en el dispositivo) for size 1321992 (602x549) OpenGL version: 3.3 (Core Profile) Mesa 18.2.8 OpenGL renderer: llvmpipe (LLVM 7.0, 256 bits) OpenGL vendor: VMware, Inc. }}} " defect closed normal Volume Data fixed all ChimeraX