id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 19453 MemoryError saving session chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Windows-10-10.0.19045 ChimeraX Version: 1.10.1 (2025-07-24 20:15:27 UTC) Description Replace this text with list of actions that caused this problem to occur Log: UCSF ChimeraX version: 1.10.1 (2025-07-24) © 2016-2025 Regents of the University of California. All rights reserved. > open D:\Téléchargements\emd_3883.map~\80S.cxs format session Opened emd_3883.map as #2, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 4, values float32 Opened emd_3883.map 0 as #4.1, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Opened emd_3883.map 1 as #4.2, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Opened emd_3883.map 2 as #4.3, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Opened emd_3883.map 3 as #4.4, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Opened emd_3883.map 4 as #4.5, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Opened emd_3883.map 5 as #4.6, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Log from Fri Oct 24 17:20:34 2025UCSF ChimeraX version: 1.10.1 (2025-07-24) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open 6QZP format mmcif fromDatabase pdb 6qzp title: High-resolution cryo-EM structure of the human 80S ribosome [more info...] Chain information for 6qzp #1 --- Chain | Description | UniProt L5 | 28S rRNA (3773-MER) | L7 | 5S rRNA (120-MER) | L8 | 5.8S rRNA (156-MER) | LA | 60S ribosomal protein L8 | RL8_HUMAN 2-249 LB | 60S ribosomal protein L3 | RL3_HUMAN 2-403 LC | 60S ribosomal protein L4 | RL4_HUMAN 1-368 LD | 60S ribosomal protein L5 | RL5_HUMAN 2-294 LE | 60S ribosomal protein L6 | RL6_HUMAN 42-288 LF | 60S ribosomal protein L7 | RL7_HUMAN 24-248 LG | 60S ribosomal protein L7a | RL7A_HUMAN 26-266 LH | 60S ribosomal protein L9 | RL9_HUMAN 1-190 LI | 60S ribosomal protein L10-like | RL10L_HUMAN 2-214 LJ | 60S ribosomal protein L11 | RL11_HUMAN 3-178 LL | 60S ribosomal protein L13 | RL13_HUMAN 2-211 LM | 60S ribosomal protein L14 | RL14_HUMAN 2-140 LN | 60S ribosomal protein L15 | RL15_HUMAN 2-204 LO | 60S ribosomal protein L13a | RL13A_HUMAN 3-203 LP | 60S ribosomal protein L17 | RL17_HUMAN 2-154 LQ | 60S ribosomal protein L18 | RL18_HUMAN 2-188 LR | 60S ribosomal protein L19 | RL19_HUMAN 2-188 LS | 60S ribosomal protein L18a | RL18A_HUMAN 2-176 LT | 60S ribosomal protein L21 | RL21_HUMAN 2-160 LU | 60S ribosomal protein L22 | RL22_HUMAN 17-117 LV | 60S ribosomal protein L23 | RL23_HUMAN 10-140 LW | 60S ribosomal protein L24 | RL24_HUMAN 1-124 LX | 60S ribosomal protein L23a | RL23A_HUMAN 37-156 LY | 60S ribosomal protein L26 | RL26_HUMAN 1-134 LZ | 60S ribosomal protein L27 | RL27_HUMAN 2-136 La | 60S ribosomal protein L27a | RL27A_HUMAN 2-148 Lb | 60S ribosomal protein L29 | RL29_HUMAN 2-122 Lc | 60S ribosomal protein L30 | RL30_HUMAN 9-106 Ld | 60S ribosomal protein L31 | RL31_HUMAN 18-124 Le | 60S ribosomal protein L32 | RL32_HUMAN 2-129 Lf | 60S ribosomal protein L35a | RL35A_HUMAN 2-110 Lg | 60S ribosomal protein L34 | RL34_HUMAN 2-115 Lh | 60S ribosomal protein L35 | RL35_HUMAN 2-123 Li | 60S ribosomal protein L36 | RL36_HUMAN 2-103 Lj | 60S ribosomal protein L37 | RL37_HUMAN 2-87 Lk | 60S ribosomal protein L38 | RL38_HUMAN 2-70 Ll | 60S ribosomal protein L39 | RL39_HUMAN 2-51 Lm | Ubiquitin-60S ribosomal protein L40 | RL40_HUMAN 77-128 Ln | 60S ribosomal protein L41 | RL41_HUMAN 1-24 Lo | 60S ribosomal protein L36a | RL36A_HUMAN 2-106 Lp | 60S ribosomal protein L37a | RL37A_HUMAN 2-92 Lr | 60S ribosomal protein L28 | RL28_HUMAN 2-126 Lz | 60S ribosomal protein L10a | RL10A_HUMAN 1-217 S2 | 18S rRNA (1740-MER) | S6 | E site tRNA (75-MER) | SA | 40S ribosomal protein SA | RSSA_HUMAN 3-223 SB | 40S ribosomal protein S3a | RS3A_HUMAN 21-234 SC | 40S ribosomal protein S2 | RS2_HUMAN 59-280 SD | 40S ribosomal protein S3 | RS3_HUMAN 1-227 SE | 40S ribosomal protein S4, X isoform | RS4X_HUMAN 2-263 SF | 40S ribosomal protein S5 | RS5_HUMAN 16-204 SG | 40S ribosomal protein S6 | RS6_HUMAN 1-237 SH | 40S ribosomal protein S7 | RS7_HUMAN 5-193 SI | 40S ribosomal protein S8 | RS8_HUMAN 2-207 SJ | 40S ribosomal protein S9 | RS9_HUMAN 2-186 SK | 40S ribosomal protein S10 | RS10_HUMAN 1-98 SL | 40S ribosomal protein S11 | RS11_HUMAN 2-154 SM | 40S ribosomal protein S12 | RS12_HUMAN 11-132 SN | 40S ribosomal protein S13 | RS13_HUMAN 2-151 SO | 40S ribosomal protein S14 | RS14_HUMAN 12-151 SP | 40S ribosomal protein S15 | RS15_HUMAN 10-136 SQ | 40S ribosomal protein S16 | RS16_HUMAN 6-146 SR | 40S ribosomal protein S17 | RS17_HUMAN 1-135 SS | 40S ribosomal protein S18 | RS18_HUMAN 1-145 ST | 40S ribosomal protein S19 | RS19_HUMAN 2-144 SU | 40S ribosomal protein S20 | RS20_HUMAN 17-119 SV | 40S ribosomal protein S21 | RS21_HUMAN 1-83 SW | 40S ribosomal protein S15a | RS15A_HUMAN 2-130 SX | 40S ribosomal protein S23 | RS23_HUMAN 2-142 SY | 40S ribosomal protein S24 | RS24_HUMAN 2-132 SZ | 40S ribosomal protein S25 | RS25_HUMAN 41-115 Sa | 40S ribosomal protein S26 | RS26_HUMAN 2-103 Sb | 40S ribosomal protein S27 | RS27_HUMAN 2-84 Sc | 40S ribosomal protein S28 | RS28_HUMAN 5-68 Sd | 40S ribosomal protein S29 | RS29_HUMAN 2-56 Se | 40S ribosomal protein S30 | RS30_HUMAN 2-59 Sf | Ubiquitin-40S ribosomal protein S27a | RS27A_HUMAN 85-151 Sg | Receptor of activated protein C kinase 1 | RACK1_HUMAN 2-314 Non-standard residues in 6qzp #1 --- B8N — (2~{R})-2-azanyl-4-[5-[(2~{S},3~{R},4~{S},5~{R})-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)oxolan-2-yl]-3-methyl-2,6-bis(oxidanylidene)pyrimidin-1-yl]butanoic acid HMT — (3beta)-O~3~-[(2R)-2,6-dihydroxy-2-(2-methoxy-2-oxoethyl)-6-methylheptanoyl]cephalotaxine (Homoharringtonine; Cephalotaxine; [3(R)]-4-methyl 2-hydroxy-2-(4-hydroxy-4-methylpentyl)butanedioate) HYG — hygromycin B (hygromix; antihelmycin; hydromycin B; destomysin; antibiotic A-396-II) MG — magnesium ion ZN — zinc ion 64 atoms have alternate locations. Control/examine alternate locations with Altloc Explorer [start tool...] or the altlocs command. > open D:/Téléchargements/emd_3883.map~/emd_3883.map Opened emd_3883.map as #2, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 4, values float32 > color /LA /LB /LC /LD /LE /LF /LG /LH /LI /LJ /LL /LM /LN /LO /LP /LQ /LR > /LS /LT /LU /LV /LW /LX /LY /LZ /La /Lb /Lc /Ld /Le /Lf /Lg /Lh /Li /Lj /Lk > /Ll /Lm /Ln /Lo /Lp /Lr /Lz white > color > /SA /SB /SC /SD /SE /SF /SG /SH /SI /SJ /SK /SL /SM /SN /SO /SP /SQ /SR /SS > /ST /SU /SV /SW /SX /SY /SZ /Sa /Sb /Sc /Sd /Se blue Unknown command: /SA /SB /SC /SD /SE /SF /SG /SH /SI /SJ /SK /SL /SM /SN /SO /SP /SQ /SR /SS /ST /SU /SV /SW /SX /SY /SZ /Sa /Sb /Sc /Sd /Se blue > color /SA /SB /SC /SD /SE /SF /SG /SH /SI /SJ /SK /SL /SM /SN /SO /SP /SQ > /SR /SS /ST /SU /SV /SW /SX /SY /SZ /Sa /Sb /Sc /Sd /Se blue > color /LA /LB /LC orange > color /S2 red > color zone #2 near #1 distance 2.5 > volume splitbyzone #2 Opened emd_3883.map 0 as #3.1, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Opened emd_3883.map 1 as #3.2, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Opened emd_3883.map 2 as #3.3, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Opened emd_3883.map 3 as #3.4, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Opened emd_3883.map 4 as #3.5, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Opened emd_3883.map 5 as #3.6, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Opened emd_3883.map 6 as #3.7, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Opened emd_3883.map 7 as #3.8, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Opened emd_3883.map 8 as #3.9, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Opened emd_3883.map 9 as #3.10, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Opened emd_3883.map 10 as #3.11, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Opened emd_3883.map 11 as #3.12, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Opened emd_3883.map 12 as #3.13, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Opened emd_3883.map 13 as #3.14, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Opened emd_3883.map 14 as #3.15, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Opened emd_3883.map 15 as #3.16, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 > hide #!3.2 models > hide #!3.3 models > hide #!3.4 models > hide #!3.5 models > hide #!3.6 models > hide #!3.7 models > hide #!3.8 models > hide #!3.9 models > hide #!3.10 models > hide #!3.11 models > hide #!3.12 models > hide #!3.13 models > hide #!3.14 models > hide #!3.15 models > hide #!3.16 models > hide #!3 models > show #!3 models > hide #!1 models > hide #!3.1 models > show #!3.2 models > show #!3.3 models > hide #!3.3 models > show #!3.4 models > hide #!3.4 models > show #!3.5 models > hide #!3.5 models > show #!3.6 models > hide #!3.6 models > show #!3.6 models > show #!3.8 models > hide #!3.8 models > show #!3.8 models > hide #!3.8 models > show #!3.9 models > close #♥3 Expected a models specifier or a keyword > close #3 > color /LA /LB /LC /LD /LE /LF /LG /LH /LI /LJ /LL /LM /LN /LO /LP /LQ /LR > /LS /LT /LU /LV /LW /LX /LY /LZ /La /Lb /Lc /Ld /Le /Lf /Lg /Lh /Li /Lj /Lk > /Ll /Lm /Ln /Lo /Lp /Lr /Lz white > show #!1 models > save D:/Téléchargements/emd_3883.map~/80S.cxs > color /SA /SB /SC /SD /SE /SF /SG /SH /SI /SJ /SK /SL /SM /SN /SO /SP /SQ > /SR /SS /ST /SU /SV /SW /SX /SY /SZ /Sa /Sb /Sc /Sd /Se /Sf /Sg blue > color /L5 /L7 /L8 black > hide atoms > show cartoons > save D:/Téléchargements/emd_3883.map~/80S.cxs > color zone #2 near #1 distance 2.5 > volume splitbyzone #2 Opened emd_3883.map 0 as #3.1, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Opened emd_3883.map 1 as #3.2, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Opened emd_3883.map 2 as #3.3, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Opened emd_3883.map 3 as #3.4, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Opened emd_3883.map 4 as #3.5, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Opened emd_3883.map 5 as #3.6, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 > hide #!3.3 models > show #!3.3 models > hide #!3.2 models > hide #!3.1 models > hide #!3.4 models > hide #!3.5 models > hide #!3.6 models > hide #!3.3 models > show #!3.3 models > hide #!3.3 models > show #!3.3 models > hide #!1 models > show #!3.1 models > hide #!3.1 models > show #!3.2 models > hide #!3.2 models > show #!3.4 models > show #!3.5 models > show #!3.6 models > show #!3.1 models > hide #!3.1 models > show #!3.2 models > show #!1 models > hide #!1 models > set bgColor white > set bgColor #ffffff00 > hide #!3 models > show #!1 models > set bgColor black > set bgColor transparent > show #!3 models > show #!3.1 models > color #3.1 #aa0000ff models > hide #!3.1 models > show #!3.1 models > hide #!3.2 models > hide #!3.3 models > hide #!3.4 models > hide #!3.5 models > hide #!3.6 models > hide #!1 models > close 3 Expected a models specifier or a keyword > close #3 > color zone #2 near #1 distance 3.2 > volume splitbyzone #2 Opened emd_3883.map 0 as #3.1, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Opened emd_3883.map 1 as #3.2, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Opened emd_3883.map 2 as #3.3, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Opened emd_3883.map 3 as #3.4, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Opened emd_3883.map 4 as #3.5, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Opened emd_3883.map 5 as #3.6, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 > hide #!3.2 models > hide #!3.3 models > hide #!3.4 models > hide #!3.5 models > hide #!3.6 models > color zone #2 near #1 distance 5 > volume splitbyzone #2 Opened emd_3883.map 0 as #4.1, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Opened emd_3883.map 1 as #4.2, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Opened emd_3883.map 2 as #4.3, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Opened emd_3883.map 3 as #4.4, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Opened emd_3883.map 4 as #4.5, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 Opened emd_3883.map 5 as #4.6, grid size 640,640,640, pixel 0.85, shown at level 0.0235, step 1, values float32 > hide #!4.1 models > hide #!4.2 models > hide #!4.3 models > hide #!4.4 models > hide #!4.5 models > hide #!4.6 models > hide #!3.1 models > show #!3.1 models > hide #!4 models > show #!4 models > hide #!3.1 models > show #!3.1 models > show #!4.1 models > hide #!3.1 models > show #!3.1 models > show #!3.6 models > show #!1 models > hide #!3.6 models > hide #!4 models > close #3 > show #!4.2 models > show #!4.3 models > show #!4.4 models > show #!4.5 models > show #!4.6 models > set bgColor white > set bgColor #ffffff00 > hide atoms > select all 219463 atoms, 235341 bonds, 5578 pseudobonds, 18069 residues, 18 models selected > hide sel atoms > show sel cartoons > hide #!4 models > show #!4 models > hide #!4 models > show #!4 models > hide #!4.1 models > show #!4.1 models > color #4.1 #b2b2b250 models > color #4.1 #b2b2b20a models > color #4.1 #b2b2b232 models > color #4.1 #8fa8b232 models > color #4.1 #9eb2a332 models > color #4.1 #a1b2a532 models > color #4.2 #225687ff models > color #4.2 #232387ff models > color #4.2 #354487ff models > color #4.2 #008087ff models > color #4.2 #107187ff models > color #4.3 #29d1ffff models > color #4.2 #29d1ffff models > color #4.4 #00aa00ff models > color #4.5 #00aa00ff models > color #4.6 #00aa00ff models > hide #!4 models > color /LA /LB /LC /LD /LE /LF /LG /LH /LI /LJ /LL /LM /LN /LO /LP /LQ /LR > /LS /LT /LU /LV /LW /LX /LY /LZ /La /Lb /Lc /Ld /Le /Lf /Lg /Lh /Li /Lj /Lk > /Ll /Lm /Ln /Lo /Lp /Lr /Lz turquoise > color /L5 /L7 /L8 turquoise > color /L5 /L7 /L8 #29d1ff > select clear > show #!4 models > hide #!4.1 models > show #!4.1 models > color #4.4 #28aa05ff models > color #4.4 #5caa02ff models > color #4.4 #6faa01ff models > color #4.5 #6faa01ff models > color #4.6 #6faa01ff models > hide #!4 models > color /SA /SB /SC /SD /SE /SF /SG /SH /SI /SJ /SK /SL /SM /SN /SO /SP /SQ > /SR /SS /ST /SU /SV /SW /SX /SY /SZ /Sa /Sb /Sc /Sd /Se /Sf /Sg #6faa01 > color /S2 #6faa01 > show #!4 models > color #4.2 #29d1ff78 models > color #4.2 #29d1ff32 models > color #4.3 #29d1ff32 models > color #4.4 #6faa0132 models > color #4.5 #6faa0132 models > color #4.6 #6faa0132 models > color #4.1 #a1b2a54b models > color #4.1 #a1b2a57d models > volume splitbyzone #1 > split bycolor #1 Expected a structures specifier or a keyword > split bycolor #1 Expected a structures specifier or a keyword > split bycolor #1 Expected a structures specifier or a keyword > split bycolor Expected a structures specifier or a keyword > split bycolor Expected a structures specifier or a keyword > split #1 bycolor Expected a keyword > volume splitbycolor #1 Expected a density maps specifier or a keyword > split Split 6qzp (#1) into 81 models Chain information for 6qzp L5 #1.1 --- Chain | Description L5 | No description available Chain information for 6qzp L7 #1.2 --- Chain | Description L7 | No description available Chain information for 6qzp L8 #1.3 --- Chain | Description L8 | No description available Chain information for 6qzp LA #1.4 --- Chain | Description LA | No description available Chain information for 6qzp LB #1.5 --- Chain | Description LB | No description available Chain information for 6qzp LC #1.6 --- Chain | Description LC | No description available Chain information for 6qzp LD #1.7 --- Chain | Description LD | No description available Chain information for 6qzp LE #1.8 --- Chain | Description LE | No description available Chain information for 6qzp LF #1.9 --- Chain | Description LF | No description available Chain information for 6qzp LG #1.10 --- Chain | Description LG | No description available Chain information for 6qzp LH #1.11 --- Chain | Description LH | No description available Chain information for 6qzp LI #1.12 --- Chain | Description LI | No description available Chain information for 6qzp LJ #1.13 --- Chain | Description LJ | No description available Chain information for 6qzp LL #1.14 --- Chain | Description LL | No description available Chain information for 6qzp LM #1.15 --- Chain | Description LM | No description available Chain information for 6qzp LN #1.16 --- Chain | Description LN | No description available Chain information for 6qzp LO #1.17 --- Chain | Description LO | No description available Chain information for 6qzp LP #1.18 --- Chain | Description LP | No description available Chain information for 6qzp LQ #1.19 --- Chain | Description LQ | No description available Chain information for 6qzp LR #1.20 --- Chain | Description LR | No description available Chain information for 6qzp LS #1.21 --- Chain | Description LS | No description available Chain information for 6qzp LT #1.22 --- Chain | Description LT | No description available Chain information for 6qzp LU #1.23 --- Chain | Description LU | No description available Chain information for 6qzp LV #1.24 --- Chain | Description LV | No description available Chain information for 6qzp LW #1.25 --- Chain | Description LW | No description available Chain information for 6qzp LX #1.26 --- Chain | Description LX | No description available Chain information for 6qzp LY #1.27 --- Chain | Description LY | No description available Chain information for 6qzp LZ #1.28 --- Chain | Description LZ | No description available Chain information for 6qzp La #1.29 --- Chain | Description La | No description available Chain information for 6qzp Lb #1.30 --- Chain | Description Lb | No description available Chain information for 6qzp Lc #1.31 --- Chain | Description Lc | No description available Chain information for 6qzp Ld #1.32 --- Chain | Description Ld | No description available Chain information for 6qzp Le #1.33 --- Chain | Description Le | No description available Chain information for 6qzp Lf #1.34 --- Chain | Description Lf | No description available Chain information for 6qzp Lg #1.35 --- Chain | Description Lg | No description available Chain information for 6qzp Lh #1.36 --- Chain | Description Lh | No description available Chain information for 6qzp Li #1.37 --- Chain | Description Li | No description available Chain information for 6qzp Lj #1.38 --- Chain | Description Lj | No description available Chain information for 6qzp Lk #1.39 --- Chain | Description Lk | No description available Chain information for 6qzp Ll #1.40 --- Chain | Description Ll | No description available Chain information for 6qzp Lm #1.41 --- Chain | Description Lm | No description available Chain information for 6qzp Ln #1.42 --- Chain | Description Ln | No description available Chain information for 6qzp Lo #1.43 --- Chain | Description Lo | No description available Chain information for 6qzp Lp #1.44 --- Chain | Description Lp | No description available Chain information for 6qzp Lr #1.45 --- Chain | Description Lr | No description available Chain information for 6qzp Lz #1.46 --- Chain | Description Lz | No description available Chain information for 6qzp S2 #1.47 --- Chain | Description S2 | No description available Chain information for 6qzp S6 #1.48 --- Chain | Description S6 | No description available Chain information for 6qzp SA #1.49 --- Chain | Description SA | No description available Chain information for 6qzp SB #1.50 --- Chain | Description SB | No description available Chain information for 6qzp SC #1.51 --- Chain | Description SC | No description available Chain information for 6qzp SD #1.52 --- Chain | Description SD | No description available Chain information for 6qzp SE #1.53 --- Chain | Description SE | No description available Chain information for 6qzp SF #1.54 --- Chain | Description SF | No description available Chain information for 6qzp SG #1.55 --- Chain | Description SG | No description available Chain information for 6qzp SH #1.56 --- Chain | Description SH | No description available Chain information for 6qzp SI #1.57 --- Chain | Description SI | No description available Chain information for 6qzp SJ #1.58 --- Chain | Description SJ | No description available Chain information for 6qzp SK #1.59 --- Chain | Description SK | No description available Chain information for 6qzp SL #1.60 --- Chain | Description SL | No description available Chain information for 6qzp SM #1.61 --- Chain | Description SM | No description available Chain information for 6qzp SN #1.62 --- Chain | Description SN | No description available Chain information for 6qzp SO #1.63 --- Chain | Description SO | No description available Chain information for 6qzp SP #1.64 --- Chain | Description SP | No description available Chain information for 6qzp SQ #1.65 --- Chain | Description SQ | No description available Chain information for 6qzp SR #1.66 --- Chain | Description SR | No description available Chain information for 6qzp SS #1.67 --- Chain | Description SS | No description available Chain information for 6qzp ST #1.68 --- Chain | Description ST | No description available Chain information for 6qzp SU #1.69 --- Chain | Description SU | No description available Chain information for 6qzp SV #1.70 --- Chain | Description SV | No description available Chain information for 6qzp SW #1.71 --- Chain | Description SW | No description available Chain information for 6qzp SX #1.72 --- Chain | Description SX | No description available Chain information for 6qzp SY #1.73 --- Chain | Description SY | No description available Chain information for 6qzp SZ #1.74 --- Chain | Description SZ | No description available Chain information for 6qzp Sa #1.75 --- Chain | Description Sa | No description available Chain information for 6qzp Sb #1.76 --- Chain | Description Sb | No description available Chain information for 6qzp Sc #1.77 --- Chain | Description Sc | No description available Chain information for 6qzp Sd #1.78 --- Chain | Description Sd | No description available Chain information for 6qzp Se #1.79 --- Chain | Description Se | No description available Chain information for 6qzp Sf #1.80 --- Chain | Description Sf | No description available Chain information for 6qzp Sg #1.81 --- Chain | Description Sg | No description available > split bycolor Expected a structures specifier or a keyword > split bycolor #1 Expected a structures specifier or a keyword > color #1.1 #2f7fffff > color /L7 #2f7fff > color /L8 #2f7fff > color #1.48 #6faa01ff > color #1.47 #5aaa1dff > color #1.47 #65aa37ff > color #1.47 #37aa31ff > color #1.48 #37aa31ff > color #1.81 #4162aaff > undo > ui tool show ""Color Zone"" > ui tool show ""Volume Viewer"" > ui tool show ""Show Volume Menu"" > volume > combine #1.1 #1.2 #1.3 LrRNA Expected a keyword > combine #1.1,#1.2,#1.3 LrRNA Expected a keyword > combine models #1.1,#1.2,#1.3 LrRNA Expected a keyword > combine models #1.1,#1.2,#1.3 Expected a keyword > combine models #1.1,#1.2,#1.3 Expected a keyword > combine models #1.1 #1.2 #1.3 Expected a keyword > combine #1.1 #1.2 #1.3 > select add #1.1 80530 atoms, 89711 bonds, 3556 pseudobonds, 4064 residues, 3 models selected > select subtract #1.1 Nothing selected > combine #1.1 #1.2 #1.3 name 80S > combine #1.1 #1.2 #1.3 name 80S id #1.82 Expected a keyword > hide #!1 models > hide #!4 models > show #!4 models > combine #1.1 #1.2 #1.3 name L_rRNA > close #5 > combine models > #1.4,#1.5,#1.6,#1.7,#1.8,#1.9,#1.10,#1.11,#1.12,#1.13,#1.14,#1.15,#1.16,#1.17,#1.18,#1.19,#1.20,#1.21,#1.22,#1.23,#1.24,#1.25,#1.26,#1.27,#1.28,#1.29,#1.30,#1.31,#1.32,#1.33,#1.34,#1.35,#1.36 > name L_prot Expected a keyword > combine models #1.4 #1.5 #1.6 #1.7 #1.8 #1.9 #1.10 #1.11 #1.12 #1.13 #1.14 > #1.15 #1.16 #1.17 #1.18 #1.19 #1.20 #1.21 #1.22 #1.23 #1.24 #1.25 #1.26 > #1.27 #1.28 #1.29 #1.30 #1.31 #1.32 #1.33 #1.34 #1.35 #1.36 name L_prot Expected a keyword > combine #1.4 #1.5 #1.6 #1.7 #1.8 #1.9 #1.10 #1.11 #1.12 #1.13 #1.14 #1.15 > #1.16 #1.17 #1.18 #1.19 #1.20 #1.21 #1.22 #1.23 #1.24 #1.25 #1.26 #1.27 > #1.28 #1.29 #1.30 #1.31 #1.32 #1.33 #1.34 #1.35 #1.36 name L_prot > close #5 > combine #1.4 #1.5 #1.6 #1.7 #1.8 #1.9 #1.10 #1.11 #1.12 #1.13 #1.14 #1.15 > #1.16 #1.17 #1.18 #1.19 #1.20 #1.21 #1.22 #1.23 #1.24 #1.25 #1.26 #1.27 > #1.28 #1.29 #1.30 #1.31 #1.32 #1.33 #1.34 #1.35 #1.36 #1.37 #1.38 #1.39 > #1.40 #1.41 #1.42 #1.43 #1.44 #1.45 #1.46 L_prot Expected a keyword > combine #1.4 #1.5 #1.6 #1.7 #1.8 #1.9 #1.10 #1.11 #1.12 #1.13 #1.14 #1.15 > #1.16 #1.17 #1.18 #1.19 #1.20 #1.21 #1.22 #1.23 #1.24 #1.25 #1.26 #1.27 > #1.28 #1.29 #1.30 #1.31 #1.32 #1.33 #1.34 #1.35 #1.36 #1.37 #1.38 #1.39 > #1.40 #1.41 #1.42 #1.43 #1.44 #1.45 #1.46 name L_prot > hide #!1.48 models > show #!1.48 models > hide #!1.47 models > show #!1.47 models > hide #!1.48 models > show #!1.48 models > hide #!1.48 models > show #!1.48 models > combine #1.47 #1.48 name S_rRNA > combine #1.49 #1.50 #1.51 #1.52 #1.53 #1.54 #1.55 #1.56 #1.57 #1.58 #1.59 > #1.60 #1.61 #1.62 #1.63 #1.64 #1.65 #1.66 #1.67 #1.68 #1.69 #1.70 #1.71 > #1.72 #1.73 #1.74 #1.75 #1.76 #1.77 #1.78 #1.79 #1.80 #1.81 > name S_prot ""S_prot"" is not defined > hide #!1 models > color #7 #8faa8fff > color #7 #7daa7aff > color #7 #03aa46ff > save D:/Téléchargements/emd_3883.map~/80S.cxs ——— End of log from Fri Oct 24 17:20:34 2025 ——— > view name session-start opened ChimeraX session > combine #1.49 #1.50 #1.51 #1.52 #1.53 #1.54 #1.55 #1.56 #1.57 #1.58 #1.59 > #1.60 #1.61 #1.62 #1.63 #1.64 #1.65 #1.66 #1.67 #1.68 #1.69 #1.70 #1.71 > #1.72 #1.73 #1.74 #1.75 #1.76 #1.77 #1.78 #1.79 #1.80 #1.81 name S_prot > hide #!4 models > show #!2 models > hide #!2 models > vop zone #2 near #5 cutoff 3 model #50 name L_prot_map > volume zone #2 nearAtoms #5 cutoff 3 model #50 name L_prot_map Expected a keyword > volume zone #2 nearAtoms #5 range 3 modelId #50 name L_prot_map Expected '.' or a keyword > volume zone #2 nearAtoms #5 > volume zone #2 nearAtoms #5 range 3 newMap true Opened emd_3883.map zone as #10, grid size 640,640,640, pixel 0.85, shown at step 1, values float32 > volume zone #2 nearAtoms #6 range 3 newMap true Opened emd_3883.map zone as #11, grid size 640,640,640, pixel 0.85, shown at step 1, values float32 > volume zone #2 nearAtoms #7 range 3 newMap true Opened emd_3883.map zone as #12, grid size 640,640,640, pixel 0.85, shown at step 1, values float32 > volume zone #2 nearAtoms #9 range 3 newMap true Opened emd_3883.map zone as #13, grid size 640,640,640, pixel 0.85, shown at step 1, values float32 > save C:/Users/benja/Desktop/80S.cxs Traceback (most recent call last): File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\core\session.py"", line 1058, in save session.save(output, version=version, include_maps=include_maps) File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\core\session.py"", line 746, in save fserialize(stream, data) File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\core\serialize.py"", line 76, in msgpack_serialize stream.write(packer.pack(obj)) ^^^^^^^^^^^^^^^^ File ""msgpack\\\\_packer.pyx"", line 283, in msgpack._cmsgpack.Packer.pack MemoryError MemoryError File ""msgpack\\\\_packer.pyx"", line 283, in msgpack._cmsgpack.Packer.pack See log for complete Python traceback. Traceback (most recent call last): File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\save_command\dialog.py"", line 127, in lambda *args, ses=session: show_save_file_dialog(ses), tool_tip=""Save output file"", ^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\save_command\dialog.py"", line 138, in show_save_file_dialog _dlg.display(session, **kw) File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\save_command\dialog.py"", line 62, in display run(session, cmd) File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\core\commands\run.py"", line 49, in run results = command.run(text, log=log, return_json=return_json) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\core\commands\cli.py"", line 3221, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\save_command\cmd.py"", line 86, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\core\commands\cli.py"", line 3221, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\save_command\cmd.py"", line 101, in provider_save saver_info.save(session, path, **provider_kw) File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\core_formats\\__init__.py"", line 95, in save return cxs_save(session, path, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\core\session.py"", line 1058, in save session.save(output, version=version, include_maps=include_maps) File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\core\session.py"", line 746, in save fserialize(stream, data) File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\core\serialize.py"", line 76, in msgpack_serialize stream.write(packer.pack(obj)) ^^^^^^^^^^^^^^^^ File ""msgpack\\\\_packer.pyx"", line 283, in msgpack._cmsgpack.Packer.pack MemoryError MemoryError File ""msgpack\\\\_packer.pyx"", line 283, in msgpack._cmsgpack.Packer.pack See log for complete Python traceback. > save C:/Users/benja/Desktop/80S.cxs Traceback (most recent call last): File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\core\session.py"", line 1058, in save session.save(output, version=version, include_maps=include_maps) File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\core\session.py"", line 746, in save fserialize(stream, data) File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\core\serialize.py"", line 76, in msgpack_serialize stream.write(packer.pack(obj)) ^^^^^^^^^^^^^^^^ File ""msgpack\\\\_packer.pyx"", line 283, in msgpack._cmsgpack.Packer.pack MemoryError MemoryError File ""msgpack\\\\_packer.pyx"", line 283, in msgpack._cmsgpack.Packer.pack See log for complete Python traceback. Traceback (most recent call last): File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\save_command\dialog.py"", line 127, in lambda *args, ses=session: show_save_file_dialog(ses), tool_tip=""Save output file"", ^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\save_command\dialog.py"", line 138, in show_save_file_dialog _dlg.display(session, **kw) File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\save_command\dialog.py"", line 62, in display run(session, cmd) File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\core\commands\run.py"", line 49, in run results = command.run(text, log=log, return_json=return_json) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\core\commands\cli.py"", line 3221, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\save_command\cmd.py"", line 86, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\core\commands\cli.py"", line 3221, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\save_command\cmd.py"", line 101, in provider_save saver_info.save(session, path, **provider_kw) File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\core_formats\\__init__.py"", line 95, in save return cxs_save(session, path, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\core\session.py"", line 1058, in save session.save(output, version=version, include_maps=include_maps) File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\core\session.py"", line 746, in save fserialize(stream, data) File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\core\serialize.py"", line 76, in msgpack_serialize stream.write(packer.pack(obj)) ^^^^^^^^^^^^^^^^ File ""msgpack\\\\_packer.pyx"", line 283, in msgpack._cmsgpack.Packer.pack MemoryError MemoryError File ""msgpack\\\\_packer.pyx"", line 283, in msgpack._cmsgpack.Packer.pack See log for complete Python traceback. > save C:/Users/benja/Desktop/80S-1.cxs Traceback (most recent call last): File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\core\session.py"", line 1058, in save session.save(output, version=version, include_maps=include_maps) File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\core\session.py"", line 746, in save fserialize(stream, data) File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\core\serialize.py"", line 76, in msgpack_serialize stream.write(packer.pack(obj)) ^^^^^^^^^^^^^^^^ File ""msgpack\\\\_packer.pyx"", line 283, in msgpack._cmsgpack.Packer.pack MemoryError MemoryError File ""msgpack\\\\_packer.pyx"", line 283, in msgpack._cmsgpack.Packer.pack See log for complete Python traceback. Traceback (most recent call last): File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\save_command\dialog.py"", line 127, in lambda *args, ses=session: show_save_file_dialog(ses), tool_tip=""Save output file"", ^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\save_command\dialog.py"", line 138, in show_save_file_dialog _dlg.display(session, **kw) File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\save_command\dialog.py"", line 62, in display run(session, cmd) File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\core\commands\run.py"", line 49, in run results = command.run(text, log=log, return_json=return_json) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\core\commands\cli.py"", line 3221, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\save_command\cmd.py"", line 86, in cmd_save Command(session, registry=registry).run(provider_cmd_text, log=log) File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\core\commands\cli.py"", line 3221, in run result = ci.function(session, **kw_args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\save_command\cmd.py"", line 101, in provider_save saver_info.save(session, path, **provider_kw) File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\core_formats\\__init__.py"", line 95, in save return cxs_save(session, path, **kw) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\core\session.py"", line 1058, in save session.save(output, version=version, include_maps=include_maps) File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\core\session.py"", line 746, in save fserialize(stream, data) File ""D:\Program Files\ChimeraX 1.10.1\bin\Lib\site- packages\chimerax\core\serialize.py"", line 76, in msgpack_serialize stream.write(packer.pack(obj)) ^^^^^^^^^^^^^^^^ File ""msgpack\\\\_packer.pyx"", line 283, in msgpack._cmsgpack.Packer.pack MemoryError MemoryError File ""msgpack\\\\_packer.pyx"", line 283, in msgpack._cmsgpack.Packer.pack See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 527.56 OpenGL renderer: NVIDIA GeForce GTX 960M/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Python: 3.11.4 Locale: fr_FR.cp1252 Qt version: PyQt6 6.8.1, Qt 6.8.2 Qt runtime version: 6.8.2 Qt platform: windows Manufacturer: ASUSTeK COMPUTER INC. Model: N501VW OS: Microsoft Windows 10 Professionnel (Build 19045) Memory: 17,070,321,664 MaxProcessMemory: 137,438,953,344 CPU: 8 Intel(R) Core(TM) i7-6700HQ CPU @ 2.60GHz OSLanguage: fr-FR Installed Packages: alabaster: 1.0.0 appdirs: 1.4.4 asttokens: 3.0.0 babel: 2.17.0 beautifulsoup4: 4.13.3 blockdiag: 3.0.0 blosc2: 3.6.1 build: 1.2.2.post1 certifi: 2025.7.14 cftime: 1.6.4.post1 charset-normalizer: 3.4.2 ChimeraX-AddCharge: 1.5.19 ChimeraX-AddH: 2.2.7 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.20.2 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Aniso: 1.1.4 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.60.7 ChimeraX-AtomicLibrary: 14.1.19 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.0 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.5.1 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.10.1 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.4 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.1 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.3 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.6.2 ChimeraX-Label: 1.1.14 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.2.2 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.10.1 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.19 ChimeraX-ModelPanel: 1.5.1 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.14.1 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.10 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.3 ChimeraX-ProfileGrids: 1.1.3 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.3 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.7 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.17.1 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.45.2 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 comtypes: 1.4.10 contourpy: 1.3.2 coverage: 7.10.0 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.0.12 debugpy: 1.8.15 decorator: 5.2.1 docutils: 0.21.2 executing: 2.2.0 filelock: 3.18.0 fonttools: 4.59.0 funcparserlib: 2.0.0a0 glfw: 2.9.0 grako: 3.16.5 h5py: 3.14.0 html2text: 2024.2.26 idna: 3.10 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 1.4.1 iniconfig: 2.1.0 ipykernel: 6.29.5 ipython: 8.26.0 ipywidgets: 8.1.7 jedi: 0.19.1 Jinja2: 3.1.6 jupyter_client: 8.6.3 jupyter_core: 5.8.1 jupyterlab_widgets: 3.0.15 kiwisolver: 1.4.8 line_profiler: 4.2.0 lxml: 5.3.1 lz4: 4.3.2 MarkupSafe: 3.0.2 matplotlib: 3.10.1 matplotlib-inline: 0.1.7 msgpack: 1.1.0 ndindex: 1.10.0 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.11.0 numpy: 1.26.4 nvidia-nvjitlink-cu12: 12.9.86 OpenMM: 8.2.0 OpenMM-CUDA-12: 8.2.0 openvr: 1.26.701 packaging: 24.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pickleshare: 0.7.5 pillow: 10.4.0 pip: 25.0.1 pkginfo: 1.11.1 platformdirs: 4.3.8 pluggy: 1.6.0 prompt_toolkit: 3.0.51 psutil: 7.0.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 Pygments: 2.18.0 pynmrstar: 3.3.5 pynrrd: 1.0.0 PyOpenGL: 3.1.9 PyOpenGL-accelerate: 3.1.9 pyopenxr: 1.1.4501 pyparsing: 3.2.3 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.8.1 PyQt6-Qt6: 6.8.2 PyQt6-WebEngine-commercial: 6.8.0 PyQt6-WebEngine-Qt6: 6.8.2 PyQt6_sip: 13.10.0 pytest: 8.4.1 pytest-cov: 6.2.1 python-dateutil: 2.9.0.post0 pytz: 2025.2 pywin32: 310 pyzmq: 27.0.0 qtconsole: 5.5.2 QtPy: 2.4.3 qtshim: 1.1 RandomWords: 0.4.0 requests: 2.32.3 roman-numerals-py: 3.1.0 scipy: 1.14.0 setuptools: 78.1.0 sfftk-rw: 0.8.1 six: 1.16.0 snowballstemmer: 3.0.1 sortedcontainers: 2.4.0 soupsieve: 2.7 Sphinx: 8.2.3 sphinx-autodoc-typehints: 3.1.0 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 stack-data: 0.6.3 superqt: 0.7.1 tables: 3.10.2 tcia_utils: 1.5.1 tifffile: 2025.3.13 tinyarray: 1.2.4 tornado: 6.5.1 traitlets: 5.14.3 typing_extensions: 4.14.1 tzdata: 2025.2 urllib3: 2.5.0 wcwidth: 0.2.13 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 widgetsnbextension: 4.0.14 WMI: 1.5.1 }}} " defect closed normal Sessions fixed Greg Couch all ChimeraX