id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 18998 Crash in graphics driver during Qt drawing chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-26.0.1-arm64-arm-64bit ChimeraX Version: 1.10 (2025-06-26 08:57:52 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Aborted Current thread 0x00000001f7534800 (most recent call first): File ""/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 368 in event_loop File ""/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1057 in init File ""/Applications/ChimeraX-1.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1220 in File """", line 88 in _run_code File """", line 198 in _run_module_as_main Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, 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\nshared memory 3680K 26 \n=========== ======= ======= \nTOTAL 4.3G 6950 \nTOTAL, minus reserved VM space 4.2G 6950 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"" } }, ""logWritingSignature"" : ""f10d918b0bee1f221312f46c230ac2d604e9a09d"", ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""60186475825c62000ccf5450"", ""factorPackIds"" : [ ], ""deploymentId"" : 240000083 }, { ""rolloutId"" : ""5ffde50ce2aacd000d47a95f"", ""factorPackIds"" : [ ], ""deploymentId"" : 240000496 } ], ""experiments"" : [ { ""treatmentId"" : ""28060e10-d4e5-4163-aa2b-d8bd088d5cbf"", ""experimentId"" : ""6685b283afc7c17197d69eec"", ""deploymentId"" : 400000012 } ] } } ===== Log before crash start ===== UCSF ChimeraX version: 1.10 (2025-06-26) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/chen/Downloads/8WSJ.cif 8WSJ.cif title: Crystal structure of SARS-Cov-2 main protease, pH=6.5 [more info...] Chain information for 8WSJ.cif #1 --- Chain | Description | UniProt A | 3C-like proteinase nsp5 | R1A_SARS2 4-298 B | 3C-like proteinase nsp5 | R1A_SARS2 3-301 > set bgColor white > graphics silhouettes true > lighting shadows true > graphics silhouettes false > lighting flat > lighting full > lighting flat > select /A:4-298 2217 atoms, 2266 bonds, 295 residues, 1 model selected > color sel orange red > select /B:3-301 2176 atoms, 2226 bonds, 299 residues, 1 model selected > color sel orange > lighting shadows true intensity 0.5 > select add #1 4617 atoms, 4492 bonds, 818 residues, 1 model selected > select subtract #1 Nothing selected > select add #1 4617 atoms, 4492 bonds, 818 residues, 1 model selected > lighting flat > select subtract #1 Nothing selected > surface > lighting shadows true intensity 0.5 > lighting full > sequence chain #1/A Alignment identifier is 1/A > select /A:292 7 atoms, 6 bonds, 1 residue, 1 model selected > select /A:292-298 52 atoms, 53 bonds, 7 residues, 1 model selected > transparency (#!1 & sel) 60 > select add #1 4617 atoms, 4492 bonds, 818 residues, 2 models selected > sequence chain #1/B Alignment identifier is 1/B > select /B:56 5 atoms, 4 bonds, 1 residue, 1 model selected > select /B:56-62 46 atoms, 45 bonds, 7 residues, 1 model selected > select /B:292-293 14 atoms, 14 bonds, 2 residues, 1 model selected > select /B:292-301 69 atoms, 70 bonds, 10 residues, 1 model selected > transparency (#!1 & sel) 60 > select add #1 4617 atoms, 4492 bonds, 818 residues, 2 models selected > select subtract #1 2 models selected > select /B:296 7 atoms, 6 bonds, 1 residue, 1 model selected > select /B:296 7 atoms, 6 bonds, 1 residue, 1 model selected > select /B:296 7 atoms, 6 bonds, 1 residue, 1 model selected > color sel white > color sel black > select /B:292-293 14 atoms, 14 bonds, 2 residues, 1 model selected > select /B:292-301 69 atoms, 70 bonds, 10 residues, 1 model selected > transparency (#!1 & sel) 80 > select add #1 4617 atoms, 4492 bonds, 818 residues, 2 models selected > select /A:4-298 2217 atoms, 2266 bonds, 295 residues, 1 model selected > color (#!1 & sel) #ffffffff > color (#!1 & sel) #fff7ffff > color (#!1 & sel) #ffe4ffff > color (#!1 & sel) #ffdbffff > color (#!1 & sel) #ffd1ffff > color (#!1 & sel) #ffceffff > color (#!1 & sel) #ffcdffff > color (#!1 & sel) #ffccffff > color (#!1 & sel) #ffcaffff > color (#!1 & sel) #ffc9ffff > color (#!1 & sel) #ffc8ffff > color (#!1 & sel) #ffc2ffff > color (#!1 & sel) #ffb1ffff > color (#!1 & sel) #ffa6ffff > color (#!1 & sel) #ffa5ffff > color (#!1 & sel) #ffa4ffff > color (#!1 & sel) #ffa2ffff > color (#!1 & sel) #ff9dffff > color (#!1 & sel) #ff9affff > color (#!1 & sel) #ff99ffff > color (#!1 & sel) #ff9cffff > color (#!1 & sel) #ffa6ffff > color (#!1 & sel) #ffb6ffff > color (#!1 & sel) #ffc1ffff > color (#!1 & sel) #ffc4ffff > select /B:3-301 2176 atoms, 2226 bonds, 299 residues, 1 model selected > select /B:3-301 2176 atoms, 2226 bonds, 299 residues, 1 model selected > select /A:4-298 2217 atoms, 2266 bonds, 295 residues, 1 model selected > select /A:4-298 2217 atoms, 2266 bonds, 295 residues, 1 model selected > select add #1 4617 atoms, 4492 bonds, 818 residues, 2 models selected > select /B:3-301 2176 atoms, 2226 bonds, 299 residues, 1 model selected > color (#!1 & sel) #ffc4feff > color (#!1 & sel) #ffc4f5ff > color (#!1 & sel) #ffc4d8ff > color (#!1 & sel) #ffc4c5ff > color (#!1 & sel) #ffc4b5ff > color (#!1 & sel) #ffc4b2ff > color (#!1 & sel) #ffc4afff > color (#!1 & sel) #ffc4aeff > color (#!1 & sel) #ffc4a9ff > color (#!1 & sel) #ffc49fff > color (#!1 & sel) #ffc49cff > color (#!1 & sel) #ffc49aff > color (#!1 & sel) #ffc499ff > color (#!1 & sel) #ffc497ff > color (#!1 & sel) #ffc48bff > color (#!1 & sel) #ffc489ff > color (#!1 & sel) #ffc48aff > color (#!1 & sel) #ffc48dff > color (#!1 & sel) #ffc48fff > color (#!1 & sel) #ffc491ff > color (#!1 & sel) #ffc492ff > color (#!1 & sel) #ffc493ff > color (#!1 & sel) #ffc593ff > color (#!1 & sel) #ffcd93ff > color (#!1 & sel) #ffda93ff > color (#!1 & sel) #ffdb93ff > color (#!1 & sel) #ffdc93ff > color (#!1 & sel) #ffda93ff > color (#!1 & sel) #ffd793ff > color (#!1 & sel) #ffd693ff > color (#!1 & sel) #ffd593ff > color (#!1 & sel) #ffd493ff > color (#!1 & sel) #ffd393ff > color (#!1 & sel) #ffd093ff > color (#!1 & sel) #ffca93ff > color (#!1 & sel) #ffc693ff > color (#!1 & sel) #ffc393ff > color (#!1 & sel) #ffc093ff > color (#!1 & sel) #ffbe93ff > color (#!1 & sel) #ffbb93ff > color (#!1 & sel) #ffb493ff > color (#!1 & sel) #ffb093ff > color (#!1 & sel) #ffb193ff > color (#!1 & sel) #ffb293ff > color (#!1 & sel) #ffb393ff > color (#!1 & sel) #ffb593ff > color (#!1 & sel) #ffb793ff > select add #1 4617 atoms, 4492 bonds, 818 residues, 2 models selected > select subtract #1 2 models selected > select /A:292 7 atoms, 6 bonds, 1 residue, 1 model selected > select /A:292-298 52 atoms, 53 bonds, 7 residues, 1 model selected > select /B:292-293 14 atoms, 14 bonds, 2 residues, 1 model selected > select /B:292-301 69 atoms, 70 bonds, 10 residues, 1 model selected > transparency (#!1 & sel) 70 > select /A:292 7 atoms, 6 bonds, 1 residue, 1 model selected > select /A:292-298 52 atoms, 53 bonds, 7 residues, 1 model selected > transparency (#!1 & sel) 70 > select /A:295-296 15 atoms, 14 bonds, 2 residues, 1 model selected > select /A:295-297 22 atoms, 21 bonds, 3 residues, 1 model selected > select /A:296 7 atoms, 6 bonds, 1 residue, 1 model selected > select /A:296 7 atoms, 6 bonds, 1 residue, 1 model selected > color (#!1 & sel) black > transparency (#!1 & sel) 0 > select /B:296 7 atoms, 6 bonds, 1 residue, 1 model selected > select /B:296 7 atoms, 6 bonds, 1 residue, 1 model selected > color sel black > transparency sel 0 > select /B:41 10 atoms, 10 bonds, 1 residue, 1 model selected > select /B:41-146 759 atoms, 775 bonds, 106 residues, 1 model selected > color (#!1 & sel) white > select add #1 4617 atoms, 4492 bonds, 818 residues, 2 models selected > select subtract #1 2 models selected > select /B:41 10 atoms, 10 bonds, 1 residue, 1 model selected > select /B:41-149 776 atoms, 792 bonds, 109 residues, 1 model selected > undo > select /A:233-234 12 atoms, 11 bonds, 2 residues, 1 model selected > select /A:233-237 41 atoms, 41 bonds, 5 residues, 1 model selected > select /B:41 10 atoms, 10 bonds, 1 residue, 1 model selected > select /B:41-149 776 atoms, 792 bonds, 109 residues, 1 model selected > color (#!1 & sel) #ffdcb1ff > select /B:3-301 2176 atoms, 2226 bonds, 299 residues, 1 model selected > color (#!1 & sel) #fdb692ff > select /B:76 5 atoms, 4 bonds, 1 residue, 1 model selected > select /B:76-81 40 atoms, 40 bonds, 6 residues, 1 model selected > select /B:140 8 atoms, 7 bonds, 1 residue, 1 model selected > select /B:140-143 31 atoms, 31 bonds, 4 residues, 1 model selected ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.10 (2025-06-26) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 90.5 OpenGL renderer: Apple M2 OpenGL vendor: Apple Python: 3.11.4 Locale: en_US.UTF-8 Qt version: PyQt6 6.8.1, Qt 6.8.2 Qt runtime version: 6.8.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Air Model Identifier: Mac14,2 Model Number: Z160001B0J/A Chip: Apple M2 Total Number of Cores: 8 (4 performance and 4 efficiency) Memory: 16 GB System Firmware Version: 13822.1.2 OS Loader Version: 13822.1.2 Software: System Software Overview: System Version: macOS 26.0.1 (25A362) Kernel Version: Darwin 25.0.0 Time since boot: 5小时34分钟 Graphics/Displays: Apple M2: Chipset Model: Apple M2 Type: GPU Bus: Built-In Total Number of Cores: 8 Vendor: Apple (0x106b) Metal Support: Metal 4 Displays: Color LCD: Display Type: Built-in Liquid Retina Display Resolution: 2560 x 1664 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal DELL S2721Q: Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition) UI Looks like: 1920 x 1080 @ 60.00Hz Mirror: Off Online: Yes Rotation: Supported Installed Packages: alabaster: 1.0.0 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.0 auditwheel: 6.4.0 babel: 2.17.0 beautifulsoup4: 4.13.3 blockdiag: 3.0.0 blosc2: 3.5.0 build: 1.2.2.post1 certifi: 2023.11.17 cftime: 1.6.4.post1 charset-normalizer: 3.4.2 ChimeraX-AddCharge: 1.5.19 ChimeraX-AddH: 2.2.7 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.20.2 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Aniso: 1.1.4 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.60.7 ChimeraX-AtomicLibrary: 14.1.18 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.0 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.5.1 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.10 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.4 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.1 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.3 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.6.2 ChimeraX-Label: 1.1.14 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.2.2 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.10.1 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.19 ChimeraX-ModelPanel: 1.5.1 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.14.1 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.10 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.3 ChimeraX-ProfileGrids: 1.1.2 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.3 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.7 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.17.1 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.45.2 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.3.2 coverage: 7.9.1 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.0.12 debugpy: 1.8.14 decorator: 5.2.1 docutils: 0.21.2 executing: 2.2.0 filelock: 3.18.0 fonttools: 4.58.4 funcparserlib: 2.0.0a0 glfw: 2.9.0 grako: 3.16.5 h5py: 3.14.0 html2text: 2024.2.26 idna: 3.10 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 1.4.1 iniconfig: 2.1.0 ipykernel: 6.29.5 ipython: 8.26.0 ipywidgets: 8.1.7 jedi: 0.19.1 Jinja2: 3.1.6 jupyter_client: 8.6.3 jupyter_core: 5.8.1 jupyterlab_widgets: 3.0.15 kiwisolver: 1.4.8 line_profiler: 4.2.0 lxml: 5.3.1 lz4: 4.4.4 MarkupSafe: 3.0.2 matplotlib: 3.10.1 matplotlib-inline: 0.1.7 msgpack: 1.1.0 narwhals: 2.5.0 ndindex: 1.10.0 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.11.0 numpy: 2.3.3 numpy: 1.26.4 OpenMM: 8.2.0 openvr: 1.26.701 packaging: 24.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 10.4.0 pip: 25.0.1 pkginfo: 1.11.1 platformdirs: 4.3.8 plotly: 6.3.0 pluggy: 1.6.0 prompt_toolkit: 3.0.51 psutil: 7.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 pyelftools: 0.32 Pygments: 2.18.0 pyKVFinder: 0.8.3 pynmrstar: 3.3.5 pynrrd: 1.0.0 PyOpenGL: 3.1.9 PyOpenGL-accelerate: 3.1.9 pyopenxr: 1.1.4501 pyparsing: 3.2.3 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.8.1 PyQt6-Qt6: 6.8.2 PyQt6-WebEngine-commercial: 6.8.0 PyQt6-WebEngine-Qt6: 6.8.2 PyQt6_sip: 13.10.0 pytest: 8.4.1 pytest-cov: 6.2.1 python-dateutil: 2.9.0.post0 pytz: 2025.2 pyzmq: 27.0.0 qtconsole: 5.5.2 QtPy: 2.4.3 qtshim: 1.1 RandomWords: 0.4.0 requests: 2.32.3 roman-numerals-py: 3.1.0 scipy: 1.14.0 setuptools: 78.1.0 sfftk-rw: 0.8.1 six: 1.16.0 snowballstemmer: 3.0.1 sortedcontainers: 2.4.0 soupsieve: 2.7 Sphinx: 8.2.3 sphinx-autodoc-typehints: 3.1.0 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 stack-data: 0.6.3 superqt: 0.7.1 tables: 3.10.2 tcia_utils: 1.5.1 tifffile: 2025.3.13 tinyarray: 1.2.4 tomlkit: 0.13.3 tornado: 6.5.1 traitlets: 5.14.3 typing_extensions: 4.14.0 tzdata: 2025.2 urllib3: 2.5.0 wcwidth: 0.2.13 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 widgetsnbextension: 4.0.14 }}} " defect closed normal Window Toolkit can't reproduce Tom Goddard all ChimeraX