id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 1895 Problem deleting from command history chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: Linux-4.15.0-46-generic-x86_64-with-debian-stretch-sid ChimeraX Version: 0.8 (2018-12-17) Description (Describe the actions that caused this problem to occur here) Log: Startup Messages --- notes | Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/core/toolshed/__init__.py"", line 338, in __init__ self.init_available_from_cache(logger) File ""/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/core/toolshed/__init__.py"", line 445, in init_available_from_cache abc.load_from_cache() File ""/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/core/toolshed/available.py"", line 61, in load_from_cache b = _build_bundle(d) File ""/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/core/toolshed/available.py"", line 242, in _build_bundle keywords = _extract_extra_keywords(keywords) File ""/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/core/toolshed/installed.py"", line 270, in _extract_extra_keywords all_kwds = [k.strip() for k in kwds.split(',')] AttributeError: 'list' object has no attribute 'split' Updating list of available bundles failed: 'list' object has no attribute 'split' UCSF ChimeraX version: 0.8 (2018-12-17) How to cite UCSF ChimeraX > open /home/ricardo/veronica/dock_files/wt/ConSurf_tipi_wt_I_pdb_RUN_1556284240.chimerax Unrecognized file suffix '.chimerax' Unrecognized file suffix '.chimerax' Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/cmd_line/tool.py"", line 334, in but.clicked.connect(lambda arg, txt=but_name: self.button_clicked(txt)) File ""/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/cmd_line/tool.py"", line 421, in button_clicked if self.typed_only and not h[1]: NameError: name 'h' is not defined NameError: name 'h' is not defined File ""/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/cmd_line/tool.py"", line 421, in button_clicked if self.typed_only and not h[1]: See log for complete Python traceback. Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/cmd_line/tool.py"", line 334, in but.clicked.connect(lambda arg, txt=but_name: self.button_clicked(txt)) File ""/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/cmd_line/tool.py"", line 421, in button_clicked if self.typed_only and not h[1]: NameError: name 'h' is not defined NameError: name 'h' is not defined File ""/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/cmd_line/tool.py"", line 421, in button_clicked if self.typed_only and not h[1]: See log for complete Python traceback. Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/cmd_line/tool.py"", line 334, in but.clicked.connect(lambda arg, txt=but_name: self.button_clicked(txt)) File ""/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/cmd_line/tool.py"", line 421, in button_clicked if self.typed_only and not h[1]: NameError: name 'h' is not defined NameError: name 'h' is not defined File ""/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/cmd_line/tool.py"", line 421, in button_clicked if self.typed_only and not h[1]: See log for complete Python traceback. Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/cmd_line/tool.py"", line 334, in but.clicked.connect(lambda arg, txt=but_name: self.button_clicked(txt)) File ""/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/cmd_line/tool.py"", line 421, in button_clicked if self.typed_only and not h[1]: NameError: name 'h' is not defined NameError: name 'h' is not defined File ""/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/cmd_line/tool.py"", line 421, in button_clicked if self.typed_only and not h[1]: See log for complete Python traceback. Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/cmd_line/tool.py"", line 334, in but.clicked.connect(lambda arg, txt=but_name: self.button_clicked(txt)) File ""/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/cmd_line/tool.py"", line 421, in button_clicked if self.typed_only and not h[1]: NameError: name 'h' is not defined NameError: name 'h' is not defined File ""/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/cmd_line/tool.py"", line 421, in button_clicked if self.typed_only and not h[1]: See log for complete Python traceback. Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/cmd_line/tool.py"", line 334, in but.clicked.connect(lambda arg, txt=but_name: self.button_clicked(txt)) File ""/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/cmd_line/tool.py"", line 421, in button_clicked if self.typed_only and not h[1]: NameError: name 'h' is not defined NameError: name 'h' is not defined File ""/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/cmd_line/tool.py"", line 421, in button_clicked if self.typed_only and not h[1]: See log for complete Python traceback. Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/cmd_line/tool.py"", line 334, in but.clicked.connect(lambda arg, txt=but_name: self.button_clicked(txt)) File ""/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/cmd_line/tool.py"", line 421, in button_clicked if self.typed_only and not h[1]: NameError: name 'h' is not defined NameError: name 'h' is not defined File ""/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/cmd_line/tool.py"", line 421, in button_clicked if self.typed_only and not h[1]: See log for complete Python traceback. Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/cmd_line/tool.py"", line 334, in but.clicked.connect(lambda arg, txt=but_name: self.button_clicked(txt)) File ""/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/cmd_line/tool.py"", line 421, in button_clicked if self.typed_only and not h[1]: NameError: name 'h' is not defined NameError: name 'h' is not defined File ""/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/cmd_line/tool.py"", line 421, in button_clicked if self.typed_only and not h[1]: See log for complete Python traceback. Traceback (most recent call last): File ""/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/cmd_line/tool.py"", line 334, in but.clicked.connect(lambda arg, txt=but_name: self.button_clicked(txt)) File ""/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/cmd_line/tool.py"", line 421, in button_clicked if self.typed_only and not h[1]: NameError: name 'h' is not defined NameError: name 'h' is not defined File ""/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/cmd_line/tool.py"", line 421, in button_clicked if self.typed_only and not h[1]: See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 384.130 OpenGL renderer: Quadro K4000/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation }}} " defect closed normal Command Line duplicate all ChimeraX