id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 18892 Crash closing tool with in-window status bar with PySide 6.9.2 chimerax-bug-report@… Zach Pearson "{{{ The following bug report has been submitted: Platform: macOS-15.6.1-arm64-arm-64bit ChimeraX Version: 1.11.dev202508202216 (2025-08-20 22:16:28 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. 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1.5 > arrowScale 1.5; cartoon style helix xsection oval thickness 0.2 width 1.7; > cartoon style coil xsection oval thickness 0.2; size sidechain stickRadius > 0.12 > alias residues show atoms; del H; color byhetero > alias interactions contacts resSeparation 5 intraMol false > ignoreHiddenModels true select true color #ffffff radius 0.025 reveal true > log true; del H; color byhetero; sel clear > alias cofron cofr centerofview showpivot tru > alias cofroff cofr centerofview showpivot false > alias symclip cofr centerofview; clip near -$1 far $1 position cofr > alias cootmode set bgColor black; surface cap false; surface style solid; > lighting flat; graphics silhouettes false; style stick; ~rib; color > ##num_residues gold; color byhet ; disp; ~disp @H*; style ions ball; style > solvent ball; size ballscale 0.2; size stickradius 0.07; transparency 70; > cofr centerofview; clip near -10 far 10 position cofr; color ##~num_residues > cornflower blue > alias cootmode_mesh surface cap false; surface style mesh; lighting flat; > graphics silhouettes false; style stick; ~rib; color ##num_residues gold; > color byhet ; disp; ~disp @H*; style solvent ball; style ions ball; size > ballscale 0.2; size stickradius 0.07; cofr centerofview; clip near -10 far > 10 position cofr; color ##~num_residues #3d60ffff; transparency 50 > alias ca_and_sidechains ~rib $1; ~surf $1; ~disp $1; disp @CA&protein&$1; > disp @P&nucleic&$1; style $1 stick; disp sidechain&$1; disp > ~backbone&nucleic&$1; size stickradius 0.1; size pseudobondradius 0.1 > alias ca_trace ~rib $1; ~surf $1; ~disp $1; disp @CA&protein&$1; disp > @P&nucleic&$1; style $1 stick; size stickradius 0.1; size pseudobondradius > 0.1 > alias map_sphere_15 surface unzone ##~num_residues; sel; close #10000; > marker #10000 position cofr; sel ~sel; surface zone ##~num_residues > nearAtoms sel distance 15; close #10000 > alias map_unsphere surface unzone ##~num_residues > alias default_mol_display ~disp; rib; rainbow chain palette Set2-7; lighting > soft > alias hidemaps surface unzone ##~num_residues; sel; close #10000; marker > #10000 position cofr; sel ~sel; surface zone ##~num_residues nearAtoms sel > distance 0; close #10000 > alias showmaps surface unzone ##~num_residues > alias caps_off surface cap false > alias caps_on surface cap true > alias selbetween ks ri > alias helix setattr $1 res is_helix true > alias strand setattr $1 res is_strand true > alias coil setattr $1 res is_strand false; setattr $1 res is_helix false > alias rock_movie cofr showpivot false; movie record; rock y 30; wait 136; > movie encode ~/Desktop/rock_movie.mp4; stop > alias open_vseries ""open browse vseries true"" > buttonpanel Shortcuts rows 3 columns 4 > buttonpanel Shortcuts add Prettify command prettify > buttonpanel Shortcuts add Contacts command interactions > buttonpanel Shortcuts add Residues command residues > buttonpanel Shortcuts add default_disp command default_mol_display > buttonpanel Shortcuts add map_sphere command map_sphere_15 > buttonpanel Shortcuts add map_unsphere command map_unsphere > buttonpanel Shortcuts add cofron command cofron > buttonpanel Shortcuts add cofroff command cofroff > buttonpanel Shortcuts add cootmode command cootmode > buttonpanel Shortcuts add mark_cofr command ""marker #20000 position cofr"" > buttonpanel Shortcuts add hidemaps command hidemaps > buttonpanel Shortcuts add showmaps command showmaps UCSF ChimeraX version: 1.11.dev202508202216 (2025-08-20) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/valkove2/Downloads/cryosparc_P31_J51_class_02_00800_volume.mrc Opened cryosparc_P31_J51_class_02_00800_volume.mrc as #1, grid size 128,128,128, pixel 1.62, shown at level 0.103, step 1, values float32 > volume #1 level 0.1205 > open /Users/valkove2/Downloads/6LXD.cif 6LXD.cif title: Pri-miRNA bound DROSHA-DGCR8 complex [more info...] Chain information for 6LXD.cif #2 --- Chain | Description | UniProt A | Ribonuclease 3 | RNC_HUMAN 391-1374 B C | Microprocessor complex subunit DGCR8 | DGCR8_HUMAN 1-773 D | RNA (102-mer) | Non-standard residues in 6LXD.cif #2 --- ZN — zinc ion 5612 atoms have anisotropic B-factors. Depict anisotropic information with Thermal Ellipsoids [start tool...] or the aniso command. > default_mol_display > ui mousemode right ""rotate selected models"" > select add #2 9435 atoms, 9805 bonds, 75 pseudobonds, 1037 residues, 5 models selected > view matrix models #2,1,0,0,-30.236,0,1,0,-12.885,0,0,1,-33.773 > view matrix models > #2,0.99879,0.028666,-0.039948,-28.783,-0.032004,0.99582,-0.085582,1.7118,0.037328,0.086757,0.99553,-48.238 > view matrix models > #2,0.99879,0.028666,-0.039948,7.2646,-0.032004,0.99582,-0.085582,-9.7859,0.037328,0.086757,0.99553,-22.785 > view matrix models > #2,0.36077,0.45253,0.81551,-67.96,0.11017,0.8476,-0.51907,42.382,-0.92612,0.27711,0.25593,159.76 > view matrix models > #2,0.36077,0.45253,0.81551,-99.539,0.11017,0.8476,-0.51907,54.367,-0.92612,0.27711,0.25593,153.47 > view matrix models > #2,-0.53077,0.21197,0.82058,37.45,-0.75237,0.32788,-0.57135,228.28,-0.39016,-0.92063,-0.01455,264.66 > view matrix models > #2,-0.53077,0.21197,0.82058,41.482,-0.75237,0.32788,-0.57135,224.55,-0.39016,-0.92063,-0.01455,266.17 > view matrix models > #2,-0.53077,0.21197,0.82058,44.283,-0.75237,0.32788,-0.57135,225.03,-0.39016,-0.92063,-0.01455,264.74 > view matrix models > #2,-0.56893,0.30793,0.76256,44.284,-0.71522,0.27243,-0.64362,235.79,-0.40594,-0.91157,0.065244,256.06 > view matrix models > #2,-0.36885,0.49082,0.78933,-5.3099,-0.64606,0.47516,-0.59736,197.44,-0.66825,-0.73029,0.14184,257.06 > view matrix models > #2,-0.36885,0.49082,0.78933,-2.8087,-0.64606,0.47516,-0.59736,189.1,-0.66825,-0.73029,0.14184,260.28 > view matrix models > #2,-0.36885,0.49082,0.78933,-1.9542,-0.64606,0.47516,-0.59736,195.55,-0.66825,-0.73029,0.14184,257.8 > view matrix models > #2,-0.27529,0.31545,0.90813,-6.3807,-0.71673,0.56222,-0.41256,171.67,-0.64071,-0.76446,0.071322,266.96 > view matrix models > #2,-0.51942,0.1224,0.84571,54.051,-0.76699,0.36954,-0.52456,214.34,-0.37673,-0.92112,-0.098065,273.85 > fitmap #2 inMap #1 Fit molecule 6LXD.cif (#2) to map cryosparc_P31_J51_class_02_00800_volume.mrc (#1) using 9435 atoms average map value = 0.1082, steps = 124 shifted from previous position = 15.7 rotated from previous position = 23.7 degrees atoms outside contour = 6417, contour level = 0.12046 Position of 6LXD.cif (#2) relative to cryosparc_P31_J51_class_02_00800_volume.mrc (#1) coordinates: Matrix rotation and translation -0.49386298 0.38925515 0.77754730 13.87347200 -0.82738709 0.06467391 -0.55789597 271.04577004 -0.26745090 -0.91885675 0.29012463 212.34016147 Axis -0.21957080 0.63566763 -0.74007792 Axis point 68.61642087 220.86575393 0.00000000 Rotation angle (degrees) 124.71761233 Shift along axis 12.10054953 > open /Users/valkove2/Downloads/9ASO.cif 9ASO.cif title: Human Drosha and DGCR8 in complex with Pri-let-7a2 [more info...] Chain information for 9ASO.cif #3 --- Chain | Description | UniProt A | Isoform 4 of Drosha | RNC_HUMAN 38-1374 B C | Microprocessor complex subunit DGCR8 | DGCR8_HUMAN 1-773 E | Pri-let-7a2 | Non-standard residues in 9ASO.cif #3 --- CA — calcium ion ZN — zinc ion > default_mol_display > view matrix models > #2,-0.38731,0.15754,0.90839,13.217,-0.78764,0.45555,-0.41484,202.08,-0.47917,-0.87616,-0.052358,273.79 > select subtract #2 Nothing selected > select add #3 9426 atoms, 9784 bonds, 84 pseudobonds, 1043 residues, 5 models selected > view matrix models > #3,0.97462,-0.22248,0.024765,41.922,0.21557,0.90296,-0.37174,46.373,0.060342,0.36764,0.92801,-66.994 > view matrix models > #3,0.19953,0.56784,-0.79859,188.96,0.97134,-0.22203,0.084814,33.087,-0.12915,-0.79263,-0.59587,465.79 > view matrix models > #3,0.19953,0.56784,-0.79859,93.252,0.97134,-0.22203,0.084814,37.876,-0.12915,-0.79263,-0.59587,411.24 > view matrix models > #3,0.25296,0.46437,-0.84875,111.94,0.88659,-0.46243,0.011238,112.26,-0.38727,-0.75533,-0.52868,439.91 > view matrix models > #3,0.65165,0.18187,-0.73639,70.173,0.71646,-0.46637,0.51883,51.441,-0.24908,-0.86569,-0.43421,417.57 > view matrix models > #3,0.65165,0.18187,-0.73639,78.708,0.71646,-0.46637,0.51883,-41.849,-0.24908,-0.86569,-0.43421,411.57 > view matrix models > #3,-0.51744,0.090155,-0.85096,334.39,-0.85347,-0.12641,0.50558,188.78,-0.061989,0.98787,0.14235,-76.928 > view matrix models > #3,-0.51744,0.090155,-0.85096,339.04,-0.85347,-0.12641,0.50558,193.36,-0.061989,0.98787,0.14235,-103.42 > select subtract #3 Nothing selected > hide #!2 models > select add #3 9426 atoms, 9784 bonds, 84 pseudobonds, 1043 residues, 5 models selected > view matrix models > #3,-0.2121,0.62479,0.75144,-112.31,-0.67451,0.46281,-0.57519,247.95,-0.70714,-0.62885,0.32326,286.74 > view matrix models > #3,-0.2121,0.62479,0.75144,-124.45,-0.67451,0.46281,-0.57519,253.23,-0.70714,-0.62885,0.32326,288.15 > hide #!3 models > sequence chain #3/A Alignment identifier is 3/A > sequence chain #3/B,C Alignment identifier is 1 > sequence chain #3/E Alignment identifier is 3/E ===== Log before crash end ===== Log: > camera ortho > cofr centerOfView > mousemode rightMode clip > mousemode alt rightMode ""contour level"" > mousemode alt leftMode ""translate selected models"" > mousemode shift leftMode ""rotate selected models"" > mousemode alt control leftMode ""pick blobs"" > alias prettify cartoon style strand xsection oval thickness 0.2 width 1.5 > arrowScale 1.5; cartoon style helix xsection oval thickness 0.2 width 1.7; > cartoon style coil xsection oval thickness 0.2; size sidechain stickRadius > 0.12 > alias residues show atoms; del H; color byhetero > alias interactions contacts resSeparation 5 intraMol false > ignoreHiddenModels true select true color #ffffff radius 0.025 reveal true > log true; del H; color byhetero; sel clear > alias cofron cofr centerofview showpivot tru > alias cofroff cofr centerofview showpivot false > alias symclip cofr centerofview; clip near -$1 far $1 position cofr > alias cootmode set bgColor black; surface cap false; surface style solid; > lighting flat; graphics silhouettes false; style stick; ~rib; color > ##num_residues gold; color byhet ; disp; ~disp @H*; style ions ball; style > solvent ball; size ballscale 0.2; size stickradius 0.07; transparency 70; > cofr centerofview; clip near -10 far 10 position cofr; color ##~num_residues > cornflower blue > alias cootmode_mesh surface cap false; surface style mesh; lighting flat; > graphics silhouettes false; style stick; ~rib; color ##num_residues gold; > color byhet ; disp; ~disp @H*; style solvent ball; style ions ball; size > ballscale 0.2; size stickradius 0.07; cofr centerofview; clip near -10 far > 10 position cofr; color ##~num_residues #3d60ffff; transparency 50 > alias ca_and_sidechains ~rib $1; ~surf $1; ~disp $1; disp @CA&protein&$1; > disp @P&nucleic&$1; style $1 stick; disp sidechain&$1; disp > ~backbone&nucleic&$1; size stickradius 0.1; size pseudobondradius 0.1 > alias ca_trace ~rib $1; ~surf $1; ~disp $1; disp @CA&protein&$1; disp > @P&nucleic&$1; style $1 stick; size stickradius 0.1; size pseudobondradius > 0.1 > alias map_sphere_15 surface unzone ##~num_residues; sel; close #10000; > marker #10000 position cofr; sel ~sel; surface zone ##~num_residues > nearAtoms sel distance 15; close #10000 > alias map_unsphere surface unzone ##~num_residues > alias default_mol_display ~disp; rib; rainbow chain palette Set2-7; lighting > soft > alias hidemaps surface unzone ##~num_residues; sel; close #10000; marker > #10000 position cofr; sel ~sel; surface zone ##~num_residues nearAtoms sel > distance 0; close #10000 > alias showmaps surface unzone ##~num_residues > alias caps_off surface cap false > alias caps_on surface cap true > alias selbetween ks ri > alias helix setattr $1 res is_helix true > alias strand setattr $1 res is_strand true > alias coil setattr $1 res is_strand false; setattr $1 res is_helix false > alias rock_movie cofr showpivot false; movie record; rock y 30; wait 136; > movie encode ~/Desktop/rock_movie.mp4; stop > alias open_vseries ""open browse vseries true"" > buttonpanel Shortcuts rows 3 columns 4 > buttonpanel Shortcuts add Prettify command prettify > buttonpanel Shortcuts add Contacts command interactions > buttonpanel Shortcuts add Residues command residues > buttonpanel Shortcuts add default_disp command default_mol_display > buttonpanel Shortcuts add map_sphere command map_sphere_15 > buttonpanel Shortcuts add map_unsphere command map_unsphere > buttonpanel Shortcuts add cofron command cofron > buttonpanel Shortcuts add cofroff command cofroff > buttonpanel Shortcuts add cootmode command cootmode > buttonpanel Shortcuts add mark_cofr command ""marker #20000 position cofr"" > buttonpanel Shortcuts add hidemaps command hidemaps > buttonpanel Shortcuts add showmaps command showmaps UCSF ChimeraX version: 1.11.dev202508202216 (2025-08-20) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 89.4 OpenGL renderer: Apple M4 OpenGL vendor: Apple Python: 3.11.9 Locale: en_US.UTF-8 Qt version: PySide6 6.9.1, Qt 6.9.1 Qt runtime version: 6.9.1 Qt platform: cocoa Hardware: Hardware Overview: Model Name: Mac mini Model Identifier: Mac16,10 Model Number: Z1JX0000XLL/A Chip: Apple M4 Total Number of Cores: 10 (4 performance and 6 efficiency) Memory: 24 GB System Firmware Version: 11881.140.96 OS Loader Version: 11881.140.96 Software: System Software Overview: System Version: macOS 15.6.1 (24G90) Kernel Version: Darwin 24.6.0 Time since boot: 5 hours, 24 minutes Graphics/Displays: Apple M4: Chipset Model: Apple M4 Type: GPU Bus: Built-In Total Number of Cores: 10 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Studio Display: Display Type: Retina LCD Resolution: 5120 x 2880 Retina Display Serial Number: JTV5V9N671 Display Firmware Version: Version 17.0 (Build 21A329) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Installed Packages: alabaster: 1.0.0 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.0 babel: 2.17.0 beautifulsoup4: 4.13.4 blockdiag: 3.0.0 blosc2: 3.7.2 build: 1.2.2.post1 certifi: 2025.7.14 cftime: 1.6.4.post1 charset-normalizer: 3.4.3 ChimeraX-AddCharge: 1.5.19 ChimeraX-AddH: 2.2.7 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 3.0.1 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Aniso: 1.3.2 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.60.13 ChimeraX-AtomicLibrary: 14.1.22 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.1 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.6.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3.0 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.11.dev202508202216 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.4 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.3 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.4 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.7.1 ChimeraX-Label: 1.1.14 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.2 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.2.2 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.17.1 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-Minimize: 1.2 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.22 ChimeraX-ModelPanel: 1.5.1 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0.1 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.15.1 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.10 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.3 ChimeraX-ProfileGrids: 1.3 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.4 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.2 ChimeraX-Scenes: 0.2.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.7 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.17.2 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.48.2 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDock: 1.3 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.3 contourpy: 1.3.3 coverage: 7.10.6 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.1.2 debugpy: 1.8.16 decorator: 5.2.1 docutils: 0.21.2 executing: 2.2.0 filelock: 3.18.0 fonttools: 4.59.2 funcparserlib: 2.0.0a0 glfw: 2.9.0 grako: 3.16.5 h5py: 3.14.0 html2text: 2024.2.26 idna: 3.10 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 1.4.1 iniconfig: 2.1.0 ipykernel: 6.30.1 ipython: 9.5.0 ipython_pygments_lexers: 1.1.1 ipywidgets: 8.1.7 jedi: 0.19.2 Jinja2: 3.1.6 jupyter_client: 8.6.3 jupyter_core: 5.8.1 jupyterlab_widgets: 3.0.15 kiwisolver: 1.4.9 line_profiler: 5.0.0 lxml: 5.3.1 lz4: 4.3.2 Markdown: 3.8.2 MarkupSafe: 3.0.2 matplotlib: 3.10.1 matplotlib-inline: 0.1.7 msgpack: 1.1.0 ndindex: 1.10.0 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.11.0 numpy: 1.26.4 OpenMM: 8.2.0 openvr: 1.26.701 packaging: 25.0 ParmEd: 4.2.2 parso: 0.8.5 pep517: 0.13.1 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 10.4.0 pip: 25.2 pkginfo: 1.12.1.2 platformdirs: 4.4.0 pluggy: 1.6.0 prompt_toolkit: 3.0.52 psutil: 7.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pybind11: 3.0.0 pycollada: 0.8 pydicom: 2.4.4 Pygments: 2.18.0 pynmrstar: 3.3.5 pynrrd: 1.0.0 PyOpenGL: 3.1.10 PyOpenGL-accelerate: 3.1.10 pyopenxr: 1.1.4501 pyparsing: 3.2.3 pyproject_hooks: 1.2.0 PySide6: 6.9.1 PySide6_Addons: 6.9.1 PySide6_Essentials: 6.9.1 pytest: 8.4.1 pytest-cov: 6.2.1 python-dateutil: 2.9.0.post0 pytz: 2025.2 pyzmq: 27.0.2 qtconsole: 5.6.1 QtPy: 2.4.3 qtshim: 1.2 RandomWords: 0.4.0 requests: 2.32.4 roman-numerals-py: 3.1.0 scipy: 1.14.0 setuptools: 80.9.0 sfftk-rw: 0.8.1 shiboken6: 6.9.1 six: 1.17.0 snowballstemmer: 3.0.1 sortedcontainers: 2.4.0 soupsieve: 2.8 Sphinx: 8.2.3 sphinx-autodoc-typehints: 3.1.0 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 stack-data: 0.6.3 superqt: 0.7.5 tables: 3.10.2 tcia_utils: 1.5.1 tifffile: 2025.3.13 tinyarray: 1.2.5 tornado: 6.5.2 traitlets: 5.14.3 typing_extensions: 4.15.0 tzdata: 2025.2 urllib3: 2.5.0 wcwidth: 0.2.13 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 widgetsnbextension: 4.0.14 }}} " defect closed normal Window Toolkit duplicate all ChimeraX