id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
18848	Crash on Mac waking from sleep	chimerax-bug-report@…	Tom Goddard	"{{{
The following bug report has been submitted:
Platform:        macOS-15.7-x86_64-i386-64bit
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
The program was not actively being used at the time, and had a session open with 2 models and 2 maps.
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===== Log before crash start =====
UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> open ""/Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/Papers/AM237:BTD/ChimeraX sessions/Just
> N_BTD.cxs""

Opened nano_BTD_denmod_map_.ccp4 as #3, grid size 185,185,199, pixel 0.74,
shown at level 1.54, step 1, values float32  
Log from Thu Sep 18 15:16:59 2025UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> open ""/Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/Papers/AM237:BTD/ChimeraX
> sessions/AM_BTD_nano session.cxs""

Opened AM237_nano_denmod_map.ccp4 as #2, grid size 167,167,197, pixel 0.74,
shown at level 1.4, step 1, values float32  
Opened nano_BTD_denmod_map_.ccp4 as #3, grid size 185,185,199, pixel 0.74,
shown at level 1.54, step 1, values float32  
Log from Wed Aug 27 11:40:08 2025UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open ""/Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/EM/Model_Building/For AB paper/AM237
> N/Ref_starting_model_real_space_refined_001.pdb""

Chain information for Ref_starting_model_real_space_refined_001.pdb #1  
---  
Chain | Description  
A B C D | No description available  
  

> open ""/Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/EM/Model_Building/For AB paper/AM237
> N/AM237_nano_denmod_map.ccp4""

Opened AM237_nano_denmod_map.ccp4 as #2, grid size 167,167,197, pixel 0.74,
shown at level 4.75, step 1, values float32  

> close #1

> open ""/Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/EM/Model_Building/For AB paper/AM237
> N/NanoAM237_addingligands_AM_2.pdb""

Summary of feedback from opening
/Users/bs18klrh/Library/CloudStorage/OneDrive-
UniversityofLeeds/Research_Postgrad/EM/Model_Building/For AB paper/AM237
N/NanoAM237_addingligands_AM_2.pdb  
---  
warnings | Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
16783 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ASN (500 )  
Cannot find LINK/SSBOND residue TRP (315 )  
Cannot find LINK/SSBOND residue ASN (500 )  
Cannot find LINK/SSBOND residue ZN (751 )  
Cannot find LINK/SSBOND residue ZN (751 )  
18 messages similar to the above omitted  
  
Chain information for NanoAM237_addingligands_AM_2.pdb #1  
---  
Chain | Description  
A B C D | No description available  
  

> volume #2 level 1.462

> set bgColor white

> open ""/Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/EM/Model_Building/For AB paper/BTD
> N/BTDNano_Model_1_ligands_010.pdb""

Summary of feedback from opening
/Users/bs18klrh/Library/CloudStorage/OneDrive-
UniversityofLeeds/Research_Postgrad/EM/Model_Building/For AB paper/BTD
N/BTDNano_Model_1_ligands_010.pdb  
---  
warnings | Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
17089 messages similar to the above omitted  
  
Chain information for BTDNano_Model_1_ligands_010.pdb #3  
---  
Chain | Description  
A B C D | No description available  
  

> open ""/Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/EM/Model_Building/For AB paper/BTD
> N/BTDNano_Model_1_ligands.pdb""

Summary of feedback from opening
/Users/bs18klrh/Library/CloudStorage/OneDrive-
UniversityofLeeds/Research_Postgrad/EM/Model_Building/For AB paper/BTD
N/BTDNano_Model_1_ligands.pdb  
---  
warning | Cannot find LINK/SSBOND residue Y01 (798 )  
  
Chain information for BTDNano_Model_1_ligands.pdb #4  
---  
Chain | Description  
A B C D | No description available  
  

> hide #!2 models

> hide #!1 models

> hide #!3 models

> hide #!4 models

> show #!2 models

> show #!1 models

> volume #2 level 1.13

> open
> /Users/bs18klrh/Desktop/BTD_nano/RealSpaceRefine_11/BTDNano_Model_1_ligands_real_space_refined_010-coot-0_real_space_refined_011.pdb

Chain information for
BTDNano_Model_1_ligands_real_space_refined_010-coot-0_real_space_refined_011.pdb
#5  
---  
Chain | Description  
A B C D | No description available  
  

> hide #!2 models

> hide #!1 models

> dssp

> open
> /Users/bs18klrh/Desktop/BTD_nano/RealSpaceRefine_10/BTDNano_Model_1_ligands_real_space_refined_010.pdb

Chain information for BTDNano_Model_1_ligands_real_space_refined_010.pdb #6  
---  
Chain | Description  
A B C D | No description available  
  

> dssp

> hide #!5 models

> show #!5 models

> hide #!6 models

> open
> /Users/bs18klrh/Desktop/BTD_nano/BTDNano_Model_1_ligands_real_space_refined_010-coot-1.pdb

Summary of feedback from opening
/Users/bs18klrh/Desktop/BTD_nano/BTDNano_Model_1_ligands_real_space_refined_010-coot-1.pdb  
---  
warnings | Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
17089 messages similar to the above omitted  
  
Chain information for
BTDNano_Model_1_ligands_real_space_refined_010-coot-1.pdb #7  
---  
Chain | Description  
A B C D | No description available  
  

> hide #!5 models

> dssp

> hide #!7 models

> open
> /Users/bs18klrh/Desktop/BTD_nano/RealSpaceRefine_12/BTDNano_Model_1_ligands_real_space_refined_010-coot-1_real_space_refined_012.pdb

Chain information for
BTDNano_Model_1_ligands_real_space_refined_010-coot-1_real_space_refined_012.pdb
#8  
---  
Chain | Description  
A B C D | No description available  
  

> dssp

> close #3-7

> show #!1 models

> open
> /Users/bs18klrh/Desktop/BTD_nano/ResolveCryoEM_7/nano_BTD_denmod_map_.ccp4

Opened nano_BTD_denmod_map_.ccp4 as #3, grid size 185,185,199, pixel 0.74,
shown at level 4.9, step 1, values float32  

> close #8

> open ""/Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/EM/Model_Building/For AB paper/BTD
> N/BTDNano_Model_2.pdb""

Chain information for BTDNano_Model_2.pdb #4  
---  
Chain | Description  
A B C D | No description available  
  

> select add #3

2 models selected  

> select add #4

22792 atoms, 23328 bonds, 32 pseudobonds, 2716 residues, 5 models selected  

> ui mousemode right ""rotate selected models""

> view matrix models
> #3,-0.90341,0.42462,-0.059581,292.24,0.42708,0.90346,-0.036842,-55.125,0.038186,-0.058729,-0.99754,410.06,#4,-0.90341,0.42462,-0.059581,292.24,0.42708,0.90346,-0.036842,-55.125,0.038186,-0.058729,-0.99754,410.06

> ui mousemode right ""translate selected models""

> view matrix models
> #3,-0.90341,0.42462,-0.059581,289.96,0.42708,0.90346,-0.036842,-53.26,0.038186,-0.058729,-0.99754,383.45,#4,-0.90341,0.42462,-0.059581,289.96,0.42708,0.90346,-0.036842,-53.26,0.038186,-0.058729,-0.99754,383.45

> view matrix models
> #3,-0.90341,0.42462,-0.059581,290.08,0.42708,0.90346,-0.036842,-56.025,0.038186,-0.058729,-0.99754,383.68,#4,-0.90341,0.42462,-0.059581,290.08,0.42708,0.90346,-0.036842,-56.025,0.038186,-0.058729,-0.99754,383.68

> view matrix models
> #3,-0.90341,0.42462,-0.059581,290.96,0.42708,0.90346,-0.036842,-52.864,0.038186,-0.058729,-0.99754,385.21,#4,-0.90341,0.42462,-0.059581,290.96,0.42708,0.90346,-0.036842,-52.864,0.038186,-0.058729,-0.99754,385.21

> view matrix models
> #3,-0.90341,0.42462,-0.059581,290.78,0.42708,0.90346,-0.036842,-54.831,0.038186,-0.058729,-0.99754,385.2,#4,-0.90341,0.42462,-0.059581,290.78,0.42708,0.90346,-0.036842,-54.831,0.038186,-0.058729,-0.99754,385.2

> view matrix models
> #3,-0.90341,0.42462,-0.059581,292.56,0.42708,0.90346,-0.036842,-54.636,0.038186,-0.058729,-0.99754,385.17,#4,-0.90341,0.42462,-0.059581,292.56,0.42708,0.90346,-0.036842,-54.636,0.038186,-0.058729,-0.99754,385.17

> select subtract #3

22792 atoms, 23328 bonds, 32 pseudobonds, 2716 residues, 3 models selected  

> select subtract #4

Nothing selected  

> ui tool show ""Fit in Map""

> show #!2 models

> fitmap #4 inMap #2

Fit molecule BTDNano_Model_2.pdb (#4) to map AM237_nano_denmod_map.ccp4 (#2)
using 22792 atoms  
average map value = 3.157, steps = 92  
shifted from previous position = 2.1  
rotated from previous position = 4.14 degrees  
atoms outside contour = 4544, contour level = 1.1304  
  
Position of BTDNano_Model_2.pdb (#4) relative to AM237_nano_denmod_map.ccp4
(#2) coordinates:  
Matrix rotation and translation  
-0.89703356 0.44196244 0.00003946 275.64068818  
0.44196244 0.89703355 0.00004569 -64.22831046  
-0.00001520 0.00005842 -1.00000000 379.79764870  
Axis 0.22689971 0.97391813 0.00003005  
Axis point 145.30491249 0.00000000 189.89782990  
Rotation angle (degrees) 179.99839228  
Shift along axis 0.00109055  
  

> fitmap #4 inMap #2

Fit molecule BTDNano_Model_2.pdb (#4) to map AM237_nano_denmod_map.ccp4 (#2)
using 22792 atoms  
average map value = 3.157, steps = 40  
shifted from previous position = 0.0132  
rotated from previous position = 0.00613 degrees  
atoms outside contour = 4549, contour level = 1.1304  
  
Position of BTDNano_Model_2.pdb (#4) relative to AM237_nano_denmod_map.ccp4
(#2) coordinates:  
Matrix rotation and translation  
-0.89703071 0.44196822 -0.00006693 275.65955990  
0.44196822 0.89703071 0.00003607 -64.22646289  
0.00007598 0.00000278 -1.00000000 379.80412711  
Axis -0.22690207 -0.97391758 -0.00000870  
Axis point 145.30432644 0.00000000 189.90754198  
Rotation angle (degrees) 179.99579636  
Shift along axis 0.00025303  
  

> fitmap #3 inMap #2

Fit map nano_BTD_denmod_map_.ccp4 in map AM237_nano_denmod_map.ccp4 using
68086 points  
correlation = 0.9806, correlation about mean = 0.6791, overlap = 2.264e+06  
steps = 84, shift = 2.39, angle = 4.14 degrees  
  
Position of nano_BTD_denmod_map_.ccp4 (#3) relative to
AM237_nano_denmod_map.ccp4 (#2) coordinates:  
Matrix rotation and translation  
-0.89717553 0.44167415 0.00006373 275.71792953  
0.44167416 0.89717553 0.00004592 -64.20037306  
-0.00003690 0.00006935 -1.00000000 379.82753939  
Axis 0.22674297 0.97395463 0.00003140  
Axis point 145.33713347 0.00000000 189.91114835  
Rotation angle (degrees) 179.99704004  
Shift along axis 0.00077624  
  

> volume #3 level 1.424

> hide #!2 models

> hide #!3 models

> show atoms

> hide atoms

> dssp

> hide #!4 models

> show #!2 models

> hide #!2 models

> select ::name=""AM2""

148 atoms, 160 bonds, 4 residues, 1 model selected  

> select
> ::name=""AM2""::name=""CA""::name=""POV""::name=""PTY""::name=""UNL""::name=""Y01""::name=""YZY""::name=""ZN""

1520 atoms, 1536 bonds, 52 residues, 2 models selected  

> show (#!1 & sel) target ab

> select clear

> select #1/A

5596 atoms, 5728 bonds, 3 pseudobonds, 674 residues, 2 models selected  

> color (#!1 & sel) #d783ffff

> select #1/B

5596 atoms, 5728 bonds, 3 pseudobonds, 674 residues, 2 models selected  

> color (#!1 & sel) #7a81ffff

> color (#!1 & sel) #d783ffff

> select #1/C

5596 atoms, 5728 bonds, 3 pseudobonds, 674 residues, 2 models selected  

> color (#!1 & sel) #ca8df8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #c98df8ff

> color (#!1 & sel) #c88df8ff

> color (#!1 & sel) #c78ff8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #c690f8ff

> color (#!1 & sel) #c590f8ff

> color (#!1 & sel) #c490f8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #c390f8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #c190f8ff

> color (#!1 & sel) #bf90f8ff

> color (#!1 & sel) #be90f8ff

> color (#!1 & sel) #bc90f8ff

> color (#!1 & sel) #ba8ff8ff

> color (#!1 & sel) #b88ff8ff

> color (#!1 & sel) #b790f8ff

> color (#!1 & sel) #b590f8ff

> color (#!1 & sel) #b490f8ff

> color (#!1 & sel) #b391f8ff

> color (#!1 & sel) #b491f8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #b695f8ff

> color (#!1 & sel) #b494f8ff

> color (#!1 & sel) #b295f8ff

> color (#!1 & sel) #b097f8ff

> color (#!1 & sel) #ae98f8ff

> color (#!1 & sel) #ac98f8ff

> color (#!1 & sel) #a898f8ff

> color (#!1 & sel) #a598f8ff

> color (#!1 & sel) #a298f8ff

> color (#!1 & sel) #a197f8ff

> color (#!1 & sel) #9e97f8ff

> color (#!1 & sel) #9c97f8ff

> color (#!1 & sel) #9a98f8ff

> color (#!1 & sel) #9898f8ff

> color (#!1 & sel) #9899f8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #999af8ff

> color (#!1 & sel) #b0a1f8ff

> color (#!1 & sel) #b8a5f8ff

> color (#!1 & sel) #bfa8f8ff

> color (#!1 & sel) #c4aaf8ff

> color (#!1 & sel) #c7abf8ff

> color (#!1 & sel) #ccacf8ff

> color (#!1 & sel) #d0adf8ff

> color (#!1 & sel) #d2adf8ff

> color (#!1 & sel) #d5adf8ff

> color (#!1 & sel) #d7adf8ff

> color (#!1 & sel) #daaef8ff

> color (#!1 & sel) #dcaef8ff

> color (#!1 & sel) #ddaef8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #e0aef8ff

> color (#!1 & sel) #e0aff8ff

> color (#!1 & sel) #e1aff8ff

> color (#!1 & sel) #e1b1f8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #e0b1f8ff

> color (#!1 & sel) #dfb0f8ff

> color (#!1 & sel) #d9a7f8ff

> color (#!1 & sel) #d6a2f8ff

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> color (#!1 & sel) #d49ef8ff

> color (#!1 & sel) #d39cf8ff

> color (#!1 & sel) #d29bf8ff

> color (#!1 & sel) #d199f8ff

[Repeated 1 time(s)]

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[Repeated 1 time(s)]

> color (#!1 & sel) #d097f8ff

> color (#!1 & sel) #cf97f8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #d09cf8ff

> color (#!1 & sel) #d19ff8ff

> color (#!1 & sel) #d1a2f8ff

> color (#!1 & sel) #d1a5f8ff

> color (#!1 & sel) #d1a9f8ff

> color (#!1 & sel) #d1acf8ff

> color (#!1 & sel) #d1adf8ff

> color (#!1 & sel) #d1aef8ff

> color (#!1 & sel) #d1aff8ff

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> color (#!1 & sel) #cfacf8ff

> color (#!1 & sel) #cea8f8ff

> color (#!1 & sel) #cea7f8ff

[Repeated 1 time(s)]

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[Repeated 1 time(s)]

> color (#!1 & sel) #cea5f8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #cfa5f8ff

> color (#!1 & sel) #cfa7f8ff

> color (#!1 & sel) #cfa8f8ff

> color (#!1 & sel) #cfa9f8ff

> color (#!1 & sel) #cfaaf8ff

> color (#!1 & sel) #cfabf8ff

> color (#!1 & sel) #cfacf8ff

> color (#!1 & sel) #cfadf8ff

> color (#!1 & sel) #cfaef8ff

> color (#!1 & sel) #cfaff8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #cfb0f8ff

> color (#!1 & sel) #ceb0f8ff

> color (#!1 & sel) #cfb1f8ff

> color (#!1 & sel) #cfb2f8ff

> color (#!1 & sel) #ceb2f8ff

> color (#!1 & sel) #cfb3f8ff

> color (#!1 & sel) #ceb4f8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #cdb4f8ff

> color (#!1 & sel) #cbb3f8ff

> color (#!1 & sel) #cab1f8ff

> color (#!1 & sel) #c9b0f8ff

> color (#!1 & sel) #c8aef8ff

> color (#!1 & sel) #c8adf8ff

> color (#!1 & sel) #c8abf8ff

> color (#!1 & sel) #c8aaf8ff

> color (#!1 & sel) #c8a9f8ff

> color (#!1 & sel) #c8a8f8ff

> color (#!1 & sel) #c8a6f8ff

> color (#!1 & sel) #c7a6f8ff

> color (#!1 & sel) #c7a5f8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #c7a4f8ff

> color (#!1 & sel) #c7a3f8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #c7a2f8ff

> color (#!1 & sel) #c7a1f8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #c7a0f8ff

> color (#!1 & sel) #c4a5f8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #c4a6f8ff

> color (#!1 & sel) #c4a7f8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #c5aaf8ff

> color (#!1 & sel) #c6abf8ff

> color (#!1 & sel) #c7aef8ff

> color (#!1 & sel) #c8b0f8ff

> color (#!1 & sel) #c9b2f8ff

> color (#!1 & sel) #cab4f8ff

> color (#!1 & sel) #cbb6f8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #cbb7f8ff

> color (#!1 & sel) #cbb8f8ff

> color (#!1 & sel) #ccb9f8ff

> color (#!1 & sel) #ccbbf8ff

> color (#!1 & sel) #ccbcf8ff

> color (#!1 & sel) #ccbef8ff

> color (#!1 & sel) #ccbdf8ff

> color (#!1 & sel) #cbb7f8ff

> color (#!1 & sel) #cab3f8ff

> color (#!1 & sel) #cab1f8ff

> color (#!1 & sel) #c9aff8ff

> color (#!1 & sel) #c9aef8ff

> color (#!1 & sel) #c8aaf8ff

> color (#!1 & sel) #c7a9f8ff

> color (#!1 & sel) #c6a7f8ff

> color (#!1 & sel) #c6a5f8ff

> color (#!1 & sel) #c5a3f8ff

> color (#!1 & sel) #c5a1f8ff

> color (#!1 & sel) #c49ff8ff

> color (#!1 & sel) #c49df8ff

> color (#!1 & sel) #c49cf8ff

> color (#!1 & sel) #c39cf8ff

> color (#!1 & sel) #c49bf8ff

> color (#!1 & sel) #c49cf8ff

> color (#!1 & sel) #c9a6f8ff

> color (#!1 & sel) #caabf8ff

> color (#!1 & sel) #cbadf8ff

> color (#!1 & sel) #cbaff8ff

> color (#!1 & sel) #cbb1f8ff

> color (#!1 & sel) #cbb3f8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #ccb4f8ff

> select #1/D

5596 atoms, 5728 bonds, 3 pseudobonds, 674 residues, 2 models selected  

> color (#!1 & sel) #ccb4f8ff

> select add #1

22384 atoms, 22912 bonds, 12 pseudobonds, 2696 residues, 2 models selected  

> select subtract #1

Nothing selected  

> select ::name=""AM2""

148 atoms, 160 bonds, 4 residues, 1 model selected  

> color sel #ff2f92ff

> select add #1

22384 atoms, 22912 bonds, 12 pseudobonds, 2696 residues, 2 models selected  

> select subtract #1

Nothing selected  

> color #1 byhetero

> color #2 #d783ffff models

> show #!2 models

> color #2 #f9caebff models

> color #2 #f9caeb66 models

> color #2 #c7caf566 models

> show #!1 atoms

> lighting soft

> ui tool show ""Side View""

> lighting simple

> color #2 #f4cbe666 models

> color #2 #d5bdf466 models

> hide #!1 atoms

> show #!3 models

> show #!4 models

> hide #!2 models

> hide #!1 models

> hide #!3 models

> select #4/A

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) #0096ffff

> color (#!4 & sel) #76d6ffff

> color (#!4 & sel) #0096ffff

> color (#!4 & sel) #3d93f7ff

> color (#!4 & sel) #3f94f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #4196f7ff

> color (#!4 & sel) #4498f7ff

> color (#!4 & sel) #469bf7ff

> color (#!4 & sel) #4a9ff7ff

> color (#!4 & sel) #4ca4f7ff

> color (#!4 & sel) #4ea8f7ff

> color (#!4 & sel) #50acf7ff

> color (#!4 & sel) #51adf7ff

> color (#!4 & sel) #52adf7ff

> color (#!4 & sel) #53aff7ff

> color (#!4 & sel) #54b0f7ff

> color (#!4 & sel) #56b2f7ff

> color (#!4 & sel) #56b3f7ff

> color (#!4 & sel) #58b4f7ff

> color (#!4 & sel) #5ab6f7ff

> color (#!4 & sel) #5bb7f7ff

> color (#!4 & sel) #5cb9f7ff

> color (#!4 & sel) #5dbaf7ff

> color (#!4 & sel) #5ebbf7ff

> color (#!4 & sel) #5ebcf7ff

> color (#!4 & sel) #61bff7ff

> color (#!4 & sel) #62c0f7ff

> color (#!4 & sel) #63c0f7ff

> color (#!4 & sel) #64c0f7ff

> color (#!4 & sel) #65c0f7ff

> color (#!4 & sel) #64bff7ff

> color (#!4 & sel) #60bcf7ff

> color (#!4 & sel) #5fbaf7ff

> color (#!4 & sel) #5eb8f7ff

> color (#!4 & sel) #5cb7f7ff

> color (#!4 & sel) #5cb6f7ff

> color (#!4 & sel) #5cb5f7ff

> color (#!4 & sel) #5bb4f7ff

> color (#!4 & sel) #5bb3f7ff

> color (#!4 & sel) #5ab2f7ff

> color (#!4 & sel) #59aff7ff

> color (#!4 & sel) #57acf7ff

> color (#!4 & sel) #55a8f7ff

> color (#!4 & sel) #55a7f7ff

> color (#!4 & sel) #53a4f7ff

> color (#!4 & sel) #519ff7ff

> color (#!4 & sel) #4e96f7ff

> color (#!4 & sel) #4e91f7ff

> color (#!4 & sel) #4e90f7ff

> color (#!4 & sel) #4e8ff7ff

> color (#!4 & sel) #4e8cf7ff

> color (#!4 & sel) #4d8bf7ff

> color (#!4 & sel) #4d89f7ff

> color (#!4 & sel) #4d87f7ff

> color (#!4 & sel) #4d86f7ff

> color (#!4 & sel) #4c84f7ff

> color (#!4 & sel) #4c82f7ff

> color (#!4 & sel) #4a7ff7ff

> color (#!4 & sel) #4a7df7ff

> color (#!4 & sel) #497df7ff

> color (#!4 & sel) #487bf7ff

> color (#!4 & sel) #477af7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #4477f7ff

> color (#!4 & sel) #4273f7ff

> color (#!4 & sel) #406df7ff

> color (#!4 & sel) #3e67f7ff

> color (#!4 & sel) #3d60f7ff

> color (#!4 & sel) #3d5cf7ff

> color (#!4 & sel) #3d59f7ff

> color (#!4 & sel) #3d56f7ff

> color (#!4 & sel) #3d55f7ff

> color (#!4 & sel) #3d54f7ff

> color (#!4 & sel) #3c54f7ff

> color (#!4 & sel) #3b52f7ff

> color (#!4 & sel) #3c50f7ff

> color (#!4 & sel) #3e4ef7ff

> color (#!4 & sel) #424df7ff

> color (#!4 & sel) #434cf7ff

> color (#!4 & sel) #444bf7ff

> color (#!4 & sel) #454cf7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #454df7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #434df7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #4352f7ff

> color (#!4 & sel) #496af7ff

> color (#!4 & sel) #4d79f7ff

> color (#!4 & sel) #5286f7ff

> color (#!4 & sel) #5790f7ff

> color (#!4 & sel) #5995f7ff

> color (#!4 & sel) #5a98f7ff

> color (#!4 & sel) #5b9af7ff

> color (#!4 & sel) #5b9bf7ff

> color (#!4 & sel) #5a9bf7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #589ef7ff

> color (#!4 & sel) #56a0f7ff

> color (#!4 & sel) #55a1f7ff

> color (#!4 & sel) #54a1f7ff

> color (#!4 & sel) #51a1f7ff

> color (#!4 & sel) #4da2f7ff

> color (#!4 & sel) #49a2f7ff

> color (#!4 & sel) #47a3f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #46a3f7ff

> color (#!4 & sel) #46a4f7ff

> color (#!4 & sel) #46a5f7ff

> color (#!4 & sel) #46a6f7ff

> color (#!4 & sel) #46a5f7ff

> color (#!4 & sel) #4aa0f7ff

> color (#!4 & sel) #528df7ff

> color (#!4 & sel) #5481f7ff

> color (#!4 & sel) #5377f7ff

> color (#!4 & sel) #516ff7ff

> color (#!4 & sel) #506af7ff

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> color (#!4 & sel) #5f83f7ff

> color (#!4 & sel) #668ff7ff

> color (#!4 & sel) #6b95f7ff

> color (#!4 & sel) #6e98f7ff

> color (#!4 & sel) #709af7ff

> color (#!4 & sel) #729af7ff

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> color (#!4 & sel) #7496f7ff

> color (#!4 & sel) #7492f7ff

> color (#!4 & sel) #738ff7ff

> color (#!4 & sel) #728cf7ff

> color (#!4 & sel) #728bf7ff

> color (#!4 & sel) #728af7ff

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> color (#!4 & sel) #7188f7ff

> color (#!4 & sel) #7187f7ff

> color (#!4 & sel) #7186f7ff

> color (#!4 & sel) #7084f7ff

> color (#!4 & sel) #6f81f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #6e80f7ff

> color (#!4 & sel) #6e7ff7ff

> color (#!4 & sel) #6d7ef7ff

> color (#!4 & sel) #6d7df7ff

> color (#!4 & sel) #6b7bf7ff

> color (#!4 & sel) #6b7af7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #6a78f7ff

> color (#!4 & sel) #6977f7ff

> color (#!4 & sel) #6874f7ff

> color (#!4 & sel) #6873f7ff

> color (#!4 & sel) #6772f7ff

> color (#!4 & sel) #656df7ff

> color (#!4 & sel) #656cf7ff

> color (#!4 & sel) #646bf7ff

> color (#!4 & sel) #636bf7ff

> color (#!4 & sel) #636af7ff

> color (#!4 & sel) #6267f7ff

> color (#!4 & sel) #6163f7ff

> color (#!4 & sel) #5f61f7ff

> color (#!4 & sel) #5e5ff7ff

> color (#!4 & sel) #5e5ef7ff

> color (#!4 & sel) #5d5df7ff

> color (#!4 & sel) #5d5cf7ff

> color (#!4 & sel) #5e5cf7ff

> color (#!4 & sel) #5e5bf7ff

> select #4/B

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) #5e5bf7ff

> color (#!4 & sel) #5e64f7ff

> color (#!4 & sel) #5e6ff7ff

> color (#!4 & sel) #5e70f7ff

> color (#!4 & sel) #5e72f7ff

> color (#!4 & sel) #5e80f7ff

> color (#!4 & sel) #5e8af7ff

> color (#!4 & sel) #5e8ef7ff

> color (#!4 & sel) #5e90f7ff

> color (#!4 & sel) #5e92f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #5e8ef7ff

> color (#!4 & sel) #5e82f7ff

> color (#!4 & sel) #5e73f7ff

> color (#!4 & sel) #5e6ff7ff

> color (#!4 & sel) #5e6cf7ff

> color (#!4 & sel) #5e66f7ff

> color (#!4 & sel) #5e60f7ff

> color (#!4 & sel) #5e5cf7ff

> color (#!4 & sel) #5e5af7ff

> color (#!4 & sel) #5e56f7ff

> color (#!4 & sel) #5e54f7ff

> color (#!4 & sel) #5e51f7ff

> color (#!4 & sel) #5e4cf7ff

> color (#!4 & sel) #5e4af7ff

> color (#!4 & sel) #5e47f7ff

> color (#!4 & sel) #5e45f7ff

> color (#!4 & sel) #5e43f7ff

> color (#!4 & sel) #5e5cf7ff

> color (#!4 & sel) #5e75f7ff

> color (#!4 & sel) #5e76f7ff

> color (#!4 & sel) #5e6bf7ff

> color (#!4 & sel) #5e65f7ff

> color (#!4 & sel) #5e62f7ff

> color (#!4 & sel) #5e61f7ff

> color (#!4 & sel) #5e60f7ff

> color (#!4 & sel) #5e61f7ff

> color (#!4 & sel) #5e6bf7ff

> color (#!4 & sel) #5e71f7ff

> color (#!4 & sel) #5e74f7ff

> color (#!4 & sel) #5e76f7ff

> color (#!4 & sel) #5e79f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #5e7bf7ff

> color (#!4 & sel) #5e7df7ff

> color (#!4 & sel) #5e7ff7ff

> color (#!4 & sel) #5e80f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #5d80f7ff

> color (#!4 & sel) #5b80f7ff

> color (#!4 & sel) #5880f7ff

> color (#!4 & sel) #5680f7ff

> color (#!4 & sel) #5480f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #5380f7ff

> color (#!4 & sel) #5180f7ff

> color (#!4 & sel) #4f80f7ff

> color (#!4 & sel) #4d80f7ff

> color (#!4 & sel) #4c80f7ff

> color (#!4 & sel) #4b80f7ff

> color (#!4 & sel) #4a80f7ff

> color (#!4 & sel) #4b80f7ff

> color (#!4 & sel) #6780f7ff

> color (#!4 & sel) #6b80f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #7180f7ff

> color (#!4 & sel) #7680f7ff

> color (#!4 & sel) #7d80f7ff

> color (#!4 & sel) #8080f7ff

> color (#!4 & sel) #8880f7ff

> color (#!4 & sel) #8b80f7ff

> color (#!4 & sel) #8c80f7ff

> color (#!4 & sel) #8d80f7ff

[Repeated 2 time(s)]

> color (#!4 & sel) #8c80f7ff

[Repeated 2 time(s)]

> color (#!4 & sel) #8b80f7ff

> color (#!4 & sel) #8a80f7ff

> color (#!4 & sel) #8680f7ff

> color (#!4 & sel) #7e80f7ff

> color (#!4 & sel) #7180f7ff

> color (#!4 & sel) #6c80f7ff

> color (#!4 & sel) #6480f7ff

> color (#!4 & sel) #6180f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #6080f7ff

> color (#!4 & sel) #5f80f7ff

> color (#!4 & sel) #5d80f7ff

> color (#!4 & sel) #5b80f7ff

> color (#!4 & sel) #5a80f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #5980f7ff

> color (#!4 & sel) #5386f7ff

> color (#!4 & sel) #5586f7ff

> color (#!4 & sel) #5986f7ff

> color (#!4 & sel) #5f86f7ff

> color (#!4 & sel) #6186f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #6386f7ff

> color (#!4 & sel) #6486f7ff

> color (#!4 & sel) #6786f7ff

> color (#!4 & sel) #6985f7ff

> color (#!4 & sel) #6a85f7ff

> color (#!4 & sel) #6c85f7ff

> color (#!4 & sel) #6e84f7ff

> color (#!4 & sel) #6f84f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #6f83f7ff

> color (#!4 & sel) #7083f7ff

[Repeated 2 time(s)]

> color (#!4 & sel) #7183f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #7182f7ff

> color (#!4 & sel) #7181f7ff

> color (#!4 & sel) #7081f7ff

> color (#!4 & sel) #7080f7ff

> color (#!4 & sel) #707ff7ff

> color (#!4 & sel) #6f7df7ff

> color (#!4 & sel) #6f7cf7ff

> color (#!4 & sel) #6f7af7ff

> color (#!4 & sel) #7078f7ff

> color (#!4 & sel) #7277f7ff

> color (#!4 & sel) #7377f7ff

> color (#!4 & sel) #7477f7ff

> color (#!4 & sel) #7476f7ff

> color (#!4 & sel) #7577f7ff

> color (#!4 & sel) #7677f7ff

> color (#!4 & sel) #7678f7ff

> color (#!4 & sel) #7779f7ff

> color (#!4 & sel) #797bf7ff

> color (#!4 & sel) #7c7ef7ff

> color (#!4 & sel) #7e80f7ff

> color (#!4 & sel) #7f80f7ff

> color (#!4 & sel) #8081f7ff

> color (#!4 & sel) #8182f7ff

> color (#!4 & sel) #8282f7ff

> color (#!4 & sel) #8382f7ff

> color (#!4 & sel) #8383f7ff

> color (#!4 & sel) #8483f7ff

> color (#!4 & sel) #8586f7ff

> color (#!4 & sel) #858ef7ff

> color (#!4 & sel) #8297f7ff

> color (#!4 & sel) #819bf7ff

> color (#!4 & sel) #7f9cf7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #7e9cf7ff

> color (#!4 & sel) #7c9df7ff

> color (#!4 & sel) #799bf7ff

> color (#!4 & sel) #7296f7ff

> color (#!4 & sel) #6b90f7ff

> color (#!4 & sel) #6487f7ff

> color (#!4 & sel) #6183f7ff

> color (#!4 & sel) #5c7ef7ff

> color (#!4 & sel) #5a7bf7ff

> color (#!4 & sel) #5979f7ff

> color (#!4 & sel) #5778f7ff

> color (#!4 & sel) #5677f7ff

> color (#!4 & sel) #5475f7ff

> color (#!4 & sel) #5273f7ff

> color (#!4 & sel) #4f73f7ff

> color (#!4 & sel) #4d74f7ff

> color (#!4 & sel) #4c74f7ff

> color (#!4 & sel) #4c75f7ff

> color (#!4 & sel) #4b75f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #4772f7ff

> color (#!4 & sel) #446ff7ff

> color (#!4 & sel) #416bf7ff

> color (#!4 & sel) #4069f7ff

> color (#!4 & sel) #3e66f7ff

> color (#!4 & sel) #3c63f7ff

> color (#!4 & sel) #3b61f7ff

> color (#!4 & sel) #3a5cf7ff

> color (#!4 & sel) #395bf7ff

> color (#!4 & sel) #3959f7ff

> color (#!4 & sel) #3958f7ff

> color (#!4 & sel) #3957f7ff

> color (#!4 & sel) #3958f7ff

> undo

[Repeated 2 time(s)]

> select #4/A

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) #3f69f7ff

> color (#!4 & sel) #436af7ff

> color (#!4 & sel) #466cf7ff

> color (#!4 & sel) #5987f7ff

> color (#!4 & sel) #7ab4f7ff

> color (#!4 & sel) #81bef7ff

> color (#!4 & sel) #84c0f7ff

> color (#!4 & sel) #85c0f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #86bff7ff

> color (#!4 & sel) #87bef7ff

> color (#!4 & sel) #88bdf7ff

> color (#!4 & sel) #88bbf7ff

> color (#!4 & sel) #88b8f7ff

> color (#!4 & sel) #86b4f7ff

> color (#!4 & sel) #85b1f7ff

> color (#!4 & sel) #82aef7ff

> color (#!4 & sel) #80abf7ff

> color (#!4 & sel) #7ca7f7ff

> color (#!4 & sel) #79a3f7ff

> color (#!4 & sel) #77a1f7ff

> color (#!4 & sel) #759ff7ff

> color (#!4 & sel) #749ef7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #749df7ff

> color (#!4 & sel) #739cf7ff

> color (#!4 & sel) #729bf7ff

> color (#!4 & sel) #709af7ff

> color (#!4 & sel) #6f9af7ff

> color (#!4 & sel) #6e99f7ff

> color (#!4 & sel) #6d99f7ff

[Repeated 2 time(s)]

> color (#!4 & sel) #70a7f7ff

> color (#!4 & sel) #71adf7ff

> color (#!4 & sel) #72b0f7ff

> color (#!4 & sel) #72b2f7ff

> color (#!4 & sel) #73b3f7ff

> color (#!4 & sel) #73b6f7ff

> color (#!4 & sel) #73b9f7ff

> color (#!4 & sel) #73bbf7ff

> color (#!4 & sel) #73bef7ff

> color (#!4 & sel) #71c1f7ff

[Repeated 2 time(s)]

> color (#!4 & sel) #72c0f7ff

> color (#!4 & sel) #73bef7ff

> color (#!4 & sel) #74bbf7ff

> color (#!4 & sel) #76b8f7ff

> color (#!4 & sel) #77b2f7ff

> color (#!4 & sel) #75a8f7ff

> color (#!4 & sel) #72a2f7ff

> color (#!4 & sel) #719ef7ff

> color (#!4 & sel) #719df7ff

> color (#!4 & sel) #709bf7ff

> color (#!4 & sel) #7099f7ff

> color (#!4 & sel) #7097f7ff

> color (#!4 & sel) #7195f7ff

> color (#!4 & sel) #7494f7ff

> color (#!4 & sel) #7694f7ff

> color (#!4 & sel) #7892f7ff

> color (#!4 & sel) #7a92f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #7b92f7ff

> color (#!4 & sel) #7c91f7ff

> color (#!4 & sel) #7d91f7ff

> color (#!4 & sel) #7e90f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #7e91f7ff

> color (#!4 & sel) #7e92f7ff

> color (#!4 & sel) #7d93f7ff

> color (#!4 & sel) #7c93f7ff

> color (#!4 & sel) #7a93f7ff

> color (#!4 & sel) #7893f7ff

> color (#!4 & sel) #7793f7ff

> color (#!4 & sel) #7391f7ff

> color (#!4 & sel) #7090f7ff

> color (#!4 & sel) #6d8ef7ff

> color (#!4 & sel) #6b8cf7ff

> color (#!4 & sel) #6a8cf7ff

> color (#!4 & sel) #688bf7ff

> color (#!4 & sel) #678af7ff

> color (#!4 & sel) #668af7ff

> color (#!4 & sel) #6589f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #6389f7ff

> color (#!4 & sel) #6189f7ff

> color (#!4 & sel) #6089f7ff

> color (#!4 & sel) #5e88f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #5d89f7ff

> color (#!4 & sel) #5c89f7ff

> color (#!4 & sel) #5b89f7ff

> color (#!4 & sel) #5989f7ff

> color (#!4 & sel) #5889f7ff

> color (#!4 & sel) #568af7ff

> color (#!4 & sel) #558af7ff

> color (#!4 & sel) #548af7ff

> color (#!4 & sel) #528af7ff

> color (#!4 & sel) #508af7ff

> color (#!4 & sel) #4e8bf7ff

> color (#!4 & sel) #4d8bf7ff

> color (#!4 & sel) #4c8bf7ff

> color (#!4 & sel) #4b8bf7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #4a8bf7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #4a8cf7ff

> color (#!4 & sel) #4a8df7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #498ef7ff

> color (#!4 & sel) #4a8df7ff

> color (#!4 & sel) #4a8cf7ff

> color (#!4 & sel) #498bf7ff

> color (#!4 & sel) #498af7ff

> color (#!4 & sel) #4989f7ff

> color (#!4 & sel) #4988f7ff

> color (#!4 & sel) #4986f7ff

> color (#!4 & sel) #4c81f7ff

> color (#!4 & sel) #517df7ff

> color (#!4 & sel) #577bf7ff

> color (#!4 & sel) #5a78f7ff

> color (#!4 & sel) #5c77f7ff

> color (#!4 & sel) #5e75f7ff

> color (#!4 & sel) #6371f7ff

> color (#!4 & sel) #666df7ff

> color (#!4 & sel) #686bf7ff

> color (#!4 & sel) #6d6af7ff

> color (#!4 & sel) #736af7ff

> color (#!4 & sel) #786cf7ff

> color (#!4 & sel) #816bf7ff

> color (#!4 & sel) #8768f7ff

> color (#!4 & sel) #8c64f7ff

> color (#!4 & sel) #8e61f7ff

> color (#!4 & sel) #8d5ff7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #8562f7ff

> color (#!4 & sel) #6769f7ff

> color (#!4 & sel) #6575f7ff

> color (#!4 & sel) #6178f7ff

> color (#!4 & sel) #5d79f7ff

> color (#!4 & sel) #5778f7ff

> color (#!4 & sel) #5376f7ff

> color (#!4 & sel) #5075f7ff

> color (#!4 & sel) #4c73f7ff

> color (#!4 & sel) #4873f7ff

> color (#!4 & sel) #4271f7ff

> color (#!4 & sel) #1e6ef7ff

> color (#!4 & sel) #0071f7ff

> color (#!4 & sel) #0074f7ff

> color (#!4 & sel) #0071f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #006ff7ff

> color (#!4 & sel) #016ff7ff

> color (#!4 & sel) #026ff7ff

> color (#!4 & sel) #0470f7ff

> color (#!4 & sel) #0471f7ff

> color (#!4 & sel) #0672f7ff

> color (#!4 & sel) #0974f7ff

> color (#!4 & sel) #0b75f7ff

> color (#!4 & sel) #0f78f7ff

> color (#!4 & sel) #1078f7ff

> color (#!4 & sel) #137bf7ff

> color (#!4 & sel) #157df7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #1780f7ff

> color (#!4 & sel) #1883f7ff

> color (#!4 & sel) #1985f7ff

> color (#!4 & sel) #1b89f7ff

> color (#!4 & sel) #1d8cf7ff

> color (#!4 & sel) #1e8ff7ff

> color (#!4 & sel) #1d8ff7ff

> color (#!4 & sel) #1e91f7ff

> color (#!4 & sel) #1f93f7ff

> color (#!4 & sel) #1f94f7ff

> color (#!4 & sel) #1f98f7ff

> color (#!4 & sel) #2099f7ff

[Repeated 2 time(s)]

> color (#!4 & sel) #2197f7ff

> color (#!4 & sel) #2295f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #2294f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #2293f7ff

> color (#!4 & sel) #2292f7ff

> color (#!4 & sel) #2191f7ff

> color (#!4 & sel) #2091f7ff

> color (#!4 & sel) #2090f7ff

> color (#!4 & sel) #1f8ff7ff

> color (#!4 & sel) #1e8ef7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #1d8df7ff

> color (#!4 & sel) #1c8cf7ff

> color (#!4 & sel) #1c8bf7ff

> color (#!4 & sel) #1b8af7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #1b88f7ff

> color (#!4 & sel) #1a88f7ff

> color (#!4 & sel) #1a87f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #1a86f7ff

> color (#!4 & sel) #1986f7ff

> color (#!4 & sel) #1985f7ff

> color (#!4 & sel) #1884f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #1783f7ff

> color (#!4 & sel) #1681f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #1680f7ff

> color (#!4 & sel) #157ef7ff

> color (#!4 & sel) #167df7ff

> color (#!4 & sel) #167cf7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #157bf7ff

> color (#!4 & sel) #1579f7ff

> color (#!4 & sel) #1678f7ff

> color (#!4 & sel) #1677f7ff

> color (#!4 & sel) #1675f7ff

> color (#!4 & sel) #1774f7ff

> color (#!4 & sel) #1873f7ff

> color (#!4 & sel) #1972f7ff

> color (#!4 & sel) #1a72f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #1c73f7ff

> color (#!4 & sel) #217bf7ff

> color (#!4 & sel) #237ef7ff

> color (#!4 & sel) #2584f7ff

> color (#!4 & sel) #2685f7ff

> color (#!4 & sel) #2787f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #2888f7ff

> color (#!4 & sel) #2783efff

[Repeated 1 time(s)]

> color (#!4 & sel) #2683eeff

> color (#!4 & sel) #2681eaff

> color (#!4 & sel) #2580e8ff

> color (#!4 & sel) #257ee5ff

> color (#!4 & sel) #247ce2ff

> color (#!4 & sel) #247adeff

> color (#!4 & sel) #2479ddff

> color (#!4 & sel) #2378daff

> color (#!4 & sel) #2376d7ff

> color (#!4 & sel) #2375d6ff

> color (#!4 & sel) #2275d4ff

> color (#!4 & sel) #2274d4ff

> color (#!4 & sel) #2273d2ff

> color (#!4 & sel) #2273d1ff

> color (#!4 & sel) #2272d0ff

> color (#!4 & sel) #2171ceff

> color (#!4 & sel) #216fcaff

> color (#!4 & sel) #206cc4ff

> color (#!4 & sel) #1e68bcff

> color (#!4 & sel) #1e64b7ff

> color (#!4 & sel) #1d62b3ff

> color (#!4 & sel) #1d61b1ff

> color (#!4 & sel) #1c61b0ff

> color (#!4 & sel) #1c60afff

> color (#!4 & sel) #1c5fadff

> color (#!4 & sel) #1b5ba6ff

> color (#!4 & sel) #174e8eff

> color (#!4 & sel) #134074ff

> color (#!4 & sel) #103866ff

> color (#!4 & sel) #0f345fff

> color (#!4 & sel) #0f3560ff

> color (#!4 & sel) #113867ff

> color (#!4 & sel) #14437aff

> color (#!4 & sel) #1e65b8ff

> color (#!4 & sel) #2889faff

> color (#!4 & sel) #298cffff

> color (#!4 & sel) #75fbf6ff

[Repeated 2 time(s)]

> color (#!4 & sel) #74faf7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #74faf6ff

[Repeated 1 time(s)]

> color (#!4 & sel) #74f9f4ff

> color (#!4 & sel) #74faf4ff

> color (#!4 & sel) #74faf5ff

> color (#!4 & sel) #74faf4ff

> color (#!4 & sel) #76faeeff

> color (#!4 & sel) #76f1faff

> color (#!4 & sel) #75e7faff

> color (#!4 & sel) #71d3faff

> color (#!4 & sel) #66b7faff

> color (#!4 & sel) #5ea8faff

> color (#!4 & sel) #559afaff

> color (#!4 & sel) #4387faff

> color (#!4 & sel) #3c81faff

> color (#!4 & sel) #367efaff

> color (#!4 & sel) #347dfaff

> color (#!4 & sel) #327bfaff

> color (#!4 & sel) #2f7afaff

> color (#!4 & sel) #2d79faff

> color (#!4 & sel) #2c79faff

> color (#!4 & sel) #2b78faff

> color (#!4 & sel) #2978faff

[Repeated 1 time(s)]

> color (#!4 & sel) #297afaff

> color (#!4 & sel) #2e80faff

> color (#!4 & sel) #3187faff

> color (#!4 & sel) #338cfaff

> color (#!4 & sel) #3592faff

> color (#!4 & sel) #3695faff

> color (#!4 & sel) #3797faff

> color (#!4 & sel) #3697faff

[Repeated 1 time(s)]

> color (#!4 & sel) #3596faff

> color (#!4 & sel) #3394faff

> color (#!4 & sel) #3293faff

> color (#!4 & sel) #3191faff

> color (#!4 & sel) #2f8ffaff

> color (#!4 & sel) #2e8dfaff

> color (#!4 & sel) #2c8bfaff

> color (#!4 & sel) #2c8afaff

> color (#!4 & sel) #2c89faff

> color (#!4 & sel) #2b88faff

> color (#!4 & sel) #2b87faff

> select #4/C

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) #2b88faff

> color (#!4 & sel) #2b8dfaff

> color (#!4 & sel) #2b8ffaff

> color (#!4 & sel) #2b91faff

> color (#!4 & sel) #2b93faff

> color (#!4 & sel) #2b95faff

> color (#!4 & sel) #2b96faff

> color (#!4 & sel) #2b97faff

> color (#!4 & sel) #2b9afaff

> color (#!4 & sel) #2b9dfaff

> color (#!4 & sel) #2ba0faff

> color (#!4 & sel) #2ba3faff

> color (#!4 & sel) #2ba7faff

> color (#!4 & sel) #2ba9faff

> color (#!4 & sel) #2babfaff

> color (#!4 & sel) #2baefaff

> color (#!4 & sel) #2baffaff

> color (#!4 & sel) #2bb1faff

> color (#!4 & sel) #2bb3faff

> color (#!4 & sel) #2bb5faff

> color (#!4 & sel) #2bb7faff

> color (#!4 & sel) #2bb9faff

> color (#!4 & sel) #2bbcfaff

> color (#!4 & sel) #2bbefaff

> color (#!4 & sel) #2bc0faff

> color (#!4 & sel) #2bc2faff

> color (#!4 & sel) #2bc4faff

> color (#!4 & sel) #2bc6faff

> color (#!4 & sel) #2bc8faff

> color (#!4 & sel) #2bc9faff

[Repeated 1 time(s)]

> color (#!4 & sel) #2bcafaff

> color (#!4 & sel) #2bcbfaff

[Repeated 2 time(s)]

> color (#!4 & sel) #2bcafaff

> color (#!4 & sel) #2bc9faff

> color (#!4 & sel) #2bc7faff

> color (#!4 & sel) #2bc6faff

> color (#!4 & sel) #2bc4faff

> color (#!4 & sel) #2bc1faff

> color (#!4 & sel) #2bbefaff

> color (#!4 & sel) #2bbbfaff

> color (#!4 & sel) #2bb8faff

> color (#!4 & sel) #2bb6faff

> color (#!4 & sel) #2bb4faff

> color (#!4 & sel) #2bb3faff

[Repeated 2 time(s)]

> color (#!4 & sel) #2bb4faff

> color (#!4 & sel) #2bb6faff

> color (#!4 & sel) #2bb8faff

> color (#!4 & sel) #2bbafaff

> color (#!4 & sel) #2bbcfaff

> color (#!4 & sel) #2bbdfaff

> color (#!4 & sel) #2bbefaff

> color (#!4 & sel) #2bbffaff

> color (#!4 & sel) #2bc1faff

[Repeated 1 time(s)]

> color (#!4 & sel) #2bc2faff

[Repeated 1 time(s)]

> color (#!4 & sel) #2bc3faff

> color (#!4 & sel) #2bc4faff

[Repeated 1 time(s)]

> color (#!4 & sel) #2cc4faff

> color (#!4 & sel) #2dc4faff

> color (#!4 & sel) #2fc4faff

> color (#!4 & sel) #30c4faff

> color (#!4 & sel) #32c4faff

> color (#!4 & sel) #34c4faff

> color (#!4 & sel) #36c4faff

> color (#!4 & sel) #37c4faff

> color (#!4 & sel) #38c4faff

> color (#!4 & sel) #39c4faff

> color (#!4 & sel) #3ac4faff

[Repeated 1 time(s)]

> color (#!4 & sel) #3cc4faff

> color (#!4 & sel) #3ec4faff

[Repeated 1 time(s)]

> color (#!4 & sel) #3fc4faff

> color (#!4 & sel) #41c4faff

> color (#!4 & sel) #42c4faff

> color (#!4 & sel) #43c4faff

[Repeated 1 time(s)]

> color (#!4 & sel) #45c4faff

[Repeated 1 time(s)]

> color (#!4 & sel) #46c4faff

> color (#!4 & sel) #48c4faff

> color (#!4 & sel) #49c4faff

> color (#!4 & sel) #4bc4faff

> color (#!4 & sel) #4cc4faff

> color (#!4 & sel) #4ec4faff

> color (#!4 & sel) #50c4faff

> color (#!4 & sel) #52c4faff

> color (#!4 & sel) #54c4faff

> color (#!4 & sel) #55c4faff

> color (#!4 & sel) #57c4faff

> color (#!4 & sel) #5ac4faff

> color (#!4 & sel) #5bc4faff

> color (#!4 & sel) #5dc4faff

> color (#!4 & sel) #60c4faff

> color (#!4 & sel) #62c4faff

> color (#!4 & sel) #64c4faff

> color (#!4 & sel) #67c4faff

> color (#!4 & sel) #69c4faff

> color (#!4 & sel) #6bc4faff

> color (#!4 & sel) #6cc4faff

> color (#!4 & sel) #6dc4faff

> color (#!4 & sel) #6cc4faff

> color (#!4 & sel) #6ac4faff

> color (#!4 & sel) #68c4faff

> color (#!4 & sel) #65c4faff

> color (#!4 & sel) #60c4faff

> color (#!4 & sel) #50c4faff

> color (#!4 & sel) #49c4faff

> color (#!4 & sel) #45c4faff

> color (#!4 & sel) #42c4faff

> color (#!4 & sel) #41c4faff

> color (#!4 & sel) #3ec4faff

> color (#!4 & sel) #3cc4faff

> color (#!4 & sel) #39c4faff

> color (#!4 & sel) #37c4faff

> color (#!4 & sel) #36c4faff

> color (#!4 & sel) #35c4faff

> color (#!4 & sel) #33c4faff

> color (#!4 & sel) #30c4faff

> color (#!4 & sel) #2ec4faff

[Repeated 1 time(s)]

> color (#!4 & sel) #30c4faff

> color (#!4 & sel) #34c4faff

> color (#!4 & sel) #35c4faff

> color (#!4 & sel) #38c4faff

> color (#!4 & sel) #39c4faff

> color (#!4 & sel) #3ac4faff

[Repeated 1 time(s)]

> color (#!4 & sel) #3cc4faff

> color (#!4 & sel) #3ec4faff

> color (#!4 & sel) #3fc4faff

> color (#!4 & sel) #42c4faff

> color (#!4 & sel) #45c4faff

> color (#!4 & sel) #46c4faff

> color (#!4 & sel) #48c4faff

> color (#!4 & sel) #4ac4faff

> color (#!4 & sel) #4dc4faff

[Repeated 1 time(s)]

> color (#!4 & sel) #4ec4faff

> color (#!4 & sel) #50c4faff

> color (#!4 & sel) #4fc3faff

> color (#!4 & sel) #4fc3f9ff

> color (#!4 & sel) #4ec1f7ff

> color (#!4 & sel) #4dbff5ff

> color (#!4 & sel) #4dbef4ff

> color (#!4 & sel) #4cbdf2ff

> color (#!4 & sel) #4bbbefff

> color (#!4 & sel) #4bbaeeff

> color (#!4 & sel) #4ab8ecff

> color (#!4 & sel) #4ab6eaff

> color (#!4 & sel) #49b5e8ff

> color (#!4 & sel) #49b4e7ff

> color (#!4 & sel) #48b2e4ff

> color (#!4 & sel) #47b0e2ff

> color (#!4 & sel) #47afe0ff

> color (#!4 & sel) #46aedfff

> color (#!4 & sel) #46addeff

> color (#!4 & sel) #45acdcff

> color (#!4 & sel) #45aadaff

> color (#!4 & sel) #44a8d7ff

> color (#!4 & sel) #43a7d5ff

> color (#!4 & sel) #43a5d4ff

> color (#!4 & sel) #42a3d1ff

> color (#!4 & sel) #41a2cfff

> color (#!4 & sel) #40a0cdff

> color (#!4 & sel) #409fcbff

> color (#!4 & sel) #409ecbff

> select add #4

22792 atoms, 23328 bonds, 32 pseudobonds, 2716 residues, 3 models selected  

> select subtract #4

Nothing selected  

> select #4/D

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) #409ecbff

> color (#!4 & sel) #2b87faff

> select #4/C

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) #2d97faff

> color (#!4 & sel) #2e97faff

> color (#!4 & sel) #2e98faff

> color (#!4 & sel) #2f98faff

> color (#!4 & sel) #3198faff

> color (#!4 & sel) #3398faff

> color (#!4 & sel) #3598faff

> color (#!4 & sel) #3898faff

> color (#!4 & sel) #3b98faff

> color (#!4 & sel) #3e98faff

> color (#!4 & sel) #3f98faff

> color (#!4 & sel) #4199faff

> color (#!4 & sel) #4299faff

> color (#!4 & sel) #479bfaff

> color (#!4 & sel) #4b9cfaff

> color (#!4 & sel) #4d9dfaff

> color (#!4 & sel) #4f9efaff

> color (#!4 & sel) #52a0faff

> color (#!4 & sel) #54a1faff

> color (#!4 & sel) #56a2faff

[Repeated 1 time(s)]

> color (#!4 & sel) #57a2faff

> color (#!4 & sel) #58a3faff

> color (#!4 & sel) #5aa5faff

> color (#!4 & sel) #5ba5faff

> color (#!4 & sel) #5ca5faff

> color (#!4 & sel) #5ea6faff

> color (#!4 & sel) #61a8faff

> color (#!4 & sel) #66aafaff

> color (#!4 & sel) #67aafaff

[Repeated 1 time(s)]

> color (#!4 & sel) #69acfaff

> color (#!4 & sel) #6aadfaff

> color (#!4 & sel) #6badfaff

> color (#!4 & sel) #6caefaff

> color (#!4 & sel) #6caffaff

> color (#!4 & sel) #6daffaff

> color (#!4 & sel) #6fb0faff

> color (#!4 & sel) #6fb1faff

> color (#!4 & sel) #71b2faff

> color (#!4 & sel) #74b4faff

> color (#!4 & sel) #76b4faff

> color (#!4 & sel) #78b5faff

> color (#!4 & sel) #7ab6faff

> color (#!4 & sel) #7bb7faff

[Repeated 1 time(s)]

> color (#!4 & sel) #7cb7faff

> color (#!4 & sel) #7eb8faff

> select #4/C

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) #7eb8faff

[Repeated 3 time(s)]

> color (#!4 & sel) #7eb8fafd

> color (#!4 & sel) #7eb8fafb

[Repeated 1 time(s)]

> color (#!4 & sel) #7eb8fafe

> color (#!4 & sel) #7eb8faff

> select #4/A

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> select #4/C

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> select #4/B

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) #7eb8faff

> color (#!4 & sel) #7eb8fafe

> color (#!4 & sel) #7eb8fafb

> color (#!4 & sel) #7eb8faff

> select add #4

22792 atoms, 23328 bonds, 32 pseudobonds, 2716 residues, 3 models selected  

> select subtract #4

Nothing selected  

> select ::name=""UNL""

260 atoms, 276 bonds, 4 residues, 1 model selected  

> color sel #73fcd6ff

> select
> ::name=""AM2""::name=""CA""::name=""POV""::name=""PTY""::name=""UNL""::name=""Y01""::name=""YZY""::name=""ZN""

1520 atoms, 1536 bonds, 52 residues, 2 models selected  

> show (#!4 & sel) target ab

> select add #4

23424 atoms, 23968 bonds, 32 pseudobonds, 2740 residues, 4 models selected  

> select subtract #4

632 atoms, 640 bonds, 24 residues, 1 model selected  

> color #4 byhetero

> select #4/A

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) light sea green

> color (#!4 & sel) #009193ff

> select #4/D

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) #009193ff

> color (#!4 & sel) #009193fb

[Repeated 1 time(s)]

> color (#!4 & sel) #009193ff

> select #4/B

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) #409091ff

[Repeated 1 time(s)]

> color (#!4 & sel) #418f91ff

> color (#!4 & sel) #418d91ff

> color (#!4 & sel) #418b91ff

> color (#!4 & sel) #418a91ff

> color (#!4 & sel) #418991ff

> color (#!4 & sel) #418891ff

> color (#!4 & sel) #418791ff

> color (#!4 & sel) #418591ff

> color (#!4 & sel) #418491ff

[Repeated 1 time(s)]

> color (#!4 & sel) #418391ff

[Repeated 1 time(s)]

> color (#!4 & sel) #418291ff

[Repeated 1 time(s)]

> color (#!4 & sel) #418391ff

> color (#!4 & sel) #428891ff

> color (#!4 & sel) #418c91ff

> color (#!4 & sel) #408e91ff

> color (#!4 & sel) #409091ff

> color (#!4 & sel) #3f9191ff

> color (#!4 & sel) #3f9190ff

> color (#!4 & sel) #3e918fff

> color (#!4 & sel) #3d918eff

> color (#!4 & sel) #3c918dff

> color (#!4 & sel) #3c918bff

> color (#!4 & sel) #3c9189ff

[Repeated 1 time(s)]

> color (#!4 & sel) #3c9188ff

> color (#!4 & sel) #3c9187ff

[Repeated 1 time(s)]

> color (#!4 & sel) #3b9186ff

> color (#!4 & sel) #3b9185ff

> color (#!4 & sel) #3b9184ff

> color (#!4 & sel) #3b9183ff

> color (#!4 & sel) #3b9182ff

> color (#!4 & sel) #3a9180ff

> color (#!4 & sel) #3a917eff

> color (#!4 & sel) #3a917dff

> color (#!4 & sel) #39917dff

> color (#!4 & sel) #39917cff

> color (#!4 & sel) #38917bff

> color (#!4 & sel) #37917aff

> color (#!4 & sel) #369179ff

[Repeated 1 time(s)]

> color (#!4 & sel) #359179ff

> color (#!4 & sel) #349179ff

[Repeated 1 time(s)]

> color (#!4 & sel) #339179ff

[Repeated 1 time(s)]

> color (#!4 & sel) #329179ff

[Repeated 1 time(s)]

> color (#!4 & sel) #319179ff

[Repeated 1 time(s)]

> color (#!4 & sel) #309179ff

> color (#!4 & sel) #2e9178ff

> color (#!4 & sel) #2d9178ff

[Repeated 2 time(s)]

> color (#!4 & sel) #2c9177ff

> color (#!4 & sel) #2b9177ff

> color (#!4 & sel) #299175ff

> color (#!4 & sel) #279174ff

> color (#!4 & sel) #269173ff

[Repeated 2 time(s)]

> color (#!4 & sel) #259172ff

> color (#!4 & sel) #249171ff

[Repeated 2 time(s)]

> color (#!4 & sel) #249176ff

> color (#!4 & sel) #25917cff

> color (#!4 & sel) #279182ff

> color (#!4 & sel) #299186ff

> color (#!4 & sel) #2b918aff

> color (#!4 & sel) #2c918cff

> color (#!4 & sel) #2c918dff

> color (#!4 & sel) #2c918eff

> color (#!4 & sel) #2d918fff

> color (#!4 & sel) #2d9190ff

> color (#!4 & sel) #2d9191ff

> color (#!4 & sel) #2e9091ff

> color (#!4 & sel) #2e8f91ff

[Repeated 1 time(s)]

> color (#!4 & sel) #2e8e91ff

> color (#!4 & sel) #2e8e92ff

> color (#!4 & sel) #2f8f92ff

> color (#!4 & sel) #2f9194ff

> color (#!4 & sel) #309397ff

> color (#!4 & sel) #319699ff

> color (#!4 & sel) #32999dff

> color (#!4 & sel) #339ca0ff

> color (#!4 & sel) #339ea1ff

> color (#!4 & sel) #349fa2ff

> color (#!4 & sel) #349fa3ff

> color (#!4 & sel) #34a0a4ff

> color (#!4 & sel) #34a1a5ff

> color (#!4 & sel) #35a2a5ff

[Repeated 1 time(s)]

> color (#!4 & sel) #35a2a6ff

> color (#!4 & sel) #36a5a8ff

> color (#!4 & sel) #36a7abff

> color (#!4 & sel) #37a9acff

> color (#!4 & sel) #37a9adff

> color (#!4 & sel) #37aaaeff

> color (#!4 & sel) #38acb0ff

> color (#!4 & sel) #38adb1ff

> color (#!4 & sel) #39aeb2ff

> color (#!4 & sel) #39afb3ff

> color (#!4 & sel) #39b0b4ff

> color (#!4 & sel) #3ab1b5ff

> color (#!4 & sel) #3ab3b7ff

> color (#!4 & sel) #3bb5b9ff

> color (#!4 & sel) #3bb6baff

[Repeated 1 time(s)]

> color (#!4 & sel) #3bb6bbff

> color (#!4 & sel) #3cbabbff

> color (#!4 & sel) #3dbabbff

> color (#!4 & sel) #3ebabbff

> color (#!4 & sel) #40b9bbff

> color (#!4 & sel) #42b9bbff

> color (#!4 & sel) #45b8bbff

> color (#!4 & sel) #47b8bbff

> color (#!4 & sel) #4bb8bbff

> color (#!4 & sel) #4cb8bbff

> color (#!4 & sel) #4db8bbff

> color (#!4 & sel) #4fb8bbff

> color (#!4 & sel) #51b8bbff

> color (#!4 & sel) #52b7bbff

> color (#!4 & sel) #53b7bbff

> color (#!4 & sel) #54b7bbff

> color (#!4 & sel) #55b6bbff

[Repeated 1 time(s)]

> color (#!4 & sel) #56b6bbff

> color (#!4 & sel) #57b5bbff

> color (#!4 & sel) #58b5bbff

> color (#!4 & sel) #59b4bbff

> color (#!4 & sel) #5ab3bbff

> color (#!4 & sel) #5bb3bbff

> color (#!4 & sel) #5cb3bbff

> color (#!4 & sel) #5eb3bbff

> color (#!4 & sel) #62b2bbff

> color (#!4 & sel) #66b2bbff

> color (#!4 & sel) #69b2bbff

> color (#!4 & sel) #6ab2bbff

> color (#!4 & sel) #6bb2bbff

> color (#!4 & sel) #6cb2bbff

> color (#!4 & sel) #6cb1bbff

> color (#!4 & sel) #6dafbbff

> color (#!4 & sel) #6caebbff

> color (#!4 & sel) #6cacbbff

> color (#!4 & sel) #6baabbff

> color (#!4 & sel) #6ba6bbff

> color (#!4 & sel) #6ba4bbff

> color (#!4 & sel) #6ba2bbff

> color (#!4 & sel) #6ba1bbff

[Repeated 1 time(s)]

> color (#!4 & sel) #6aa0bbff

> color (#!4 & sel) #6b9fbbff

[Repeated 2 time(s)]

> color (#!4 & sel) #6ba6bbff

> color (#!4 & sel) #69abbbff

> color (#!4 & sel) #68adbbff

> color (#!4 & sel) #67b0bbff

> color (#!4 & sel) #66b1bbff

> color (#!4 & sel) #66b2bbff

> color (#!4 & sel) #64b4bbff

> color (#!4 & sel) #63b6bbff

> color (#!4 & sel) #62b8bbff

> color (#!4 & sel) #61b9bbff

> color (#!4 & sel) #60babbff

> color (#!4 & sel) #5fbbbaff

[Repeated 1 time(s)]

> color (#!4 & sel) #5ebbb9ff

> color (#!4 & sel) #5dbbb8ff

> color (#!4 & sel) #5cbbb8ff

> color (#!4 & sel) #59bbb8ff

> color (#!4 & sel) #57bbb8ff

> color (#!4 & sel) #55bbb8ff

> color (#!4 & sel) #53bbb8ff

> color (#!4 & sel) #52bbb9ff

[Repeated 1 time(s)]

> color (#!4 & sel) #51bbb9ff

[Repeated 1 time(s)]

> color (#!4 & sel) #50bbb8ff

[Repeated 1 time(s)]

> color (#!4 & sel) #4fbbb9ff

> color (#!4 & sel) #4ebbb9ff

> color (#!4 & sel) #4dbbbaff

[Repeated 2 time(s)]

> color (#!4 & sel) #4bbbbaff

> color (#!4 & sel) #4abbb9ff

> color (#!4 & sel) #4abbb8ff

> color (#!4 & sel) #49bbb8ff

[Repeated 1 time(s)]

> color (#!4 & sel) #48bbb7ff

> color (#!4 & sel) #47bbb6ff

[Repeated 1 time(s)]

> color (#!4 & sel) #46bbb5ff

> color (#!4 & sel) #45bbb4ff

[Repeated 1 time(s)]

> color (#!4 & sel) #44bbb4ff

> color (#!4 & sel) #44bbb3ff

[Repeated 1 time(s)]

> color (#!4 & sel) #43bbb2ff

[Repeated 1 time(s)]

> color (#!4 & sel) #43bab1ff

> color (#!4 & sel) #41b4acff

> color (#!4 & sel) #40b2a9ff

> select add #4

22792 atoms, 23328 bonds, 32 pseudobonds, 2716 residues, 3 models selected  

> select subtract #4

Nothing selected  

> select add #4

22792 atoms, 23328 bonds, 32 pseudobonds, 2716 residues, 3 models selected  

> select subtract #4

Nothing selected  

> select #4/C

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) #40b2a9ff

> color (#!4 & sel) #40b2a9fb

> color (#!4 & sel) #40b2a9ef

[Repeated 1 time(s)]

> color (#!4 & sel) #40b2a9f2

[Repeated 1 time(s)]

> color (#!4 & sel) #40b2a9ff

> select add #4

22792 atoms, 23328 bonds, 32 pseudobonds, 2716 residues, 3 models selected  

> select subtract #4

Nothing selected  

> select
> ::name=""AM2""::name=""CA""::name=""POV""::name=""PTY""::name=""UNL""::name=""Y01""::name=""YZY""::name=""ZN""

1520 atoms, 1536 bonds, 52 residues, 2 models selected  

> select clear

> color #4 byhetero

> select ::name=""UNL""

260 atoms, 276 bonds, 4 residues, 1 model selected  

> color sel #73fcd6ff

> color sel byhetero

> select add #4

22792 atoms, 23328 bonds, 32 pseudobonds, 2716 residues, 3 models selected  

> select subtract #4

Nothing selected  

> color #3 #009193ff models

> show #!3 models

> color #3 #43a1a3ff models

> color #3 #5bdddfff models

> color #3 #5bdddf66 models

> color #3 #92d0df66 models

> show #!2 models

> show #!1 models

> save ""/Users/bs18klrh/OneDrive - University of
> Leeds/Research_Postgrad/Papers/AM237:BTD/ChimeraX sessions/AM_BTD_nano
> session.cxs""

> select
> ::name=""AM2""::name=""CA""::name=""POV""::name=""PTY""::name=""UNL""::name=""Y01""::name=""YZY""::name=""ZN""

1520 atoms, 1536 bonds, 52 residues, 2 models selected  

> show sel target ab

> select add #4

23424 atoms, 23968 bonds, 32 pseudobonds, 2740 residues, 4 models selected  

> select subtract #4

632 atoms, 640 bonds, 24 residues, 1 model selected  

> select add #1

22384 atoms, 22912 bonds, 12 pseudobonds, 2696 residues, 2 models selected  

> select subtract #1

Nothing selected  

> hide #!3 models

> show #!3 models

> hide #!4 models

> show #!4 models

> hide #!3 models

> hide #!4 models

> volume #2 level 0.9812

> show #!3 models

> show #!4 models

> hide #!2 models

> hide #!1 models

> show #!2 models

> show #!1 models

> ui tool show ""Side View""

> hide #!3 models

> show #!3 models

> volume #3 level 0.6068

> volume #3 level 1.545

> volume #2 level 1.399

> lighting soft

> save ""/Users/bs18klrh/OneDrive - University of
> Leeds/Research_Postgrad/Papers/AM237:BTD/ChimeraX sessions/AM_BTD_nano
> session.cxs""

——— End of log from Wed Aug 27 11:40:08 2025 ———

opened ChimeraX session  

> close #1

> close #2

> color #3 silver models

> color #3 #c0c0c080 models

> view orient

> ui tool show ""Side View""

> view orient

The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.  

> ui tool show ""Hide Dust""

> surface dust #3 size 4.44

> save ""/Users/bs18klrh/OneDrive - University of
> Leeds/Research_Postgrad/Papers/AM237:BTD/ChimeraX sessions/Just N_BTD.cxs""

——— End of log from Thu Sep 18 15:16:59 2025 ———

opened ChimeraX session  

> hide #!3 models

> select /B

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) #40b2a9ff

> color (#!4 & sel) #40b2a5ff

> color (#!4 & sel) #40b2a1ff

> color (#!4 & sel) #39b2a1ff

> color (#!4 & sel) #39b29eff

> color (#!4 & sel) #39b29bff

> color (#!4 & sel) #39b292ff

> color (#!4 & sel) #39b28eff

> color (#!4 & sel) #39b28dff

> color (#!4 & sel) #39b28eff

> color (#!4 & sel) #39b2a0ff

> color (#!4 & sel) #39b2a1ff

> color (#!4 & sel) #39b2b2ff

> color (#!4 & sel) #39b2b9ff

> color (#!4 & sel) #39b2baff

> color (#!4 & sel) #39b2bcff

> color (#!4 & sel) #39b2c5ff

> color (#!4 & sel) #39b2c8ff

> color (#!4 & sel) #39b2c9ff

> color (#!4 & sel) #39b2c2ff

> color (#!4 & sel) #39b2a7ff

> color (#!4 & sel) #39b29fff

> color (#!4 & sel) #39b291ff

> color (#!4 & sel) #39b286ff

> color (#!4 & sel) #39b284ff

> color (#!4 & sel) #39b282ff

> color (#!4 & sel) #39b281ff

> color (#!4 & sel) #39b280ff

> color (#!4 & sel) #39b275ff

> color (#!4 & sel) #39b274ff

> color (#!4 & sel) #39b276ff

> color (#!4 & sel) #39b277ff

> color (#!4 & sel) #39b278ff

> color (#!4 & sel) #39b27aff

> color (#!4 & sel) #39b27eff

> color (#!4 & sel) #39b280ff

> color (#!4 & sel) #39b289ff

> color (#!4 & sel) #39b28bff

> color (#!4 & sel) #39b28cff

> color (#!4 & sel) #39ab8cff

> color (#!4 & sel) #39a88cff

> color (#!4 & sel) #39a68cff

> color (#!4 & sel) #39a38cff

> color (#!4 & sel) #39a18cff

> color (#!4 & sel) #399c8cff

> color (#!4 & sel) #399b8cff

> color (#!4 & sel) #399c8cff

> color (#!4 & sel) #39a68cff

> color (#!4 & sel) #39a78cff

> color (#!4 & sel) #39aa8cff

> color (#!4 & sel) #39af8cff

> color (#!4 & sel) #39b68cff

> color (#!4 & sel) #39bb8cff

> color (#!4 & sel) #39be8cff

> color (#!4 & sel) #39c08cff

> color (#!4 & sel) #39c18cff

> color (#!4 & sel) #39bf8cff

> color (#!4 & sel) #39bd8cff

> color (#!4 & sel) #39bb8cff

> color (#!4 & sel) #39b88cff

> color (#!4 & sel) #39b58cff

> color (#!4 & sel) #39b48cff

> color (#!4 & sel) #39b38cff

> color (#!4 & sel) #39b28cff

> color (#!4 & sel) #3bb28cff

> color (#!4 & sel) #3eb28cff

> color (#!4 & sel) #3fb28cff

> color (#!4 & sel) #42b28cff

> color (#!4 & sel) #43b28cff

> color (#!4 & sel) #49b28cff

> color (#!4 & sel) #4cb28cff

> color (#!4 & sel) #4db28cff

> color (#!4 & sel) #50b28cff

> color (#!4 & sel) #51b28cff

> color (#!4 & sel) #53b28cff

> color (#!4 & sel) #53af8cff

> color (#!4 & sel) #53a98cff

> color (#!4 & sel) #539d8cff

> color (#!4 & sel) #53978cff

> color (#!4 & sel) #53958cff

> color (#!4 & sel) #53938cff

> color (#!4 & sel) #53918cff

> color (#!4 & sel) #53908cff

> color (#!4 & sel) #538d8cff

> color (#!4 & sel) #538c8cff

> color (#!4 & sel) #538b8cff

> color (#!4 & sel) #538a8cff

> color (#!4 & sel) #53888cff

> color (#!4 & sel) #53878cff

> color (#!4 & sel) #53818cff

> color (#!4 & sel) #53808cff

> color (#!4 & sel) #53768cff

> color (#!4 & sel) #53748cff

> color (#!4 & sel) #53728cff

> color (#!4 & sel) #536d8cff

> color (#!4 & sel) #536c8cff

> color (#!4 & sel) #536b8cff

> color (#!4 & sel) #536a8cff

> color (#!4 & sel) #536d8cff

> color (#!4 & sel) #53708cff

> color (#!4 & sel) #53738cff

> color (#!4 & sel) #53768cff

> color (#!4 & sel) #53788cff

> color (#!4 & sel) #53798cff

> color (#!4 & sel) #537b8cff

> color (#!4 & sel) #537c8cff

> color (#!4 & sel) #53818cff

> color (#!4 & sel) #53848cff

> color (#!4 & sel) #538488ff

> color (#!4 & sel) #538487ff

> color (#!4 & sel) #538485ff

> color (#!4 & sel) #538484ff

> color (#!4 & sel) #538483ff

> color (#!4 & sel) #538480ff

> color (#!4 & sel) #538476ff

> color (#!4 & sel) #528476ff

> color (#!4 & sel) #4f8476ff

> color (#!4 & sel) #4c8476ff

> color (#!4 & sel) #478476ff

> color (#!4 & sel) #448476ff

> color (#!4 & sel) #428476ff

> color (#!4 & sel) #408476ff

> color (#!4 & sel) #3c8476ff

> color (#!4 & sel) #3a8476ff

> color (#!4 & sel) #398476ff

> color (#!4 & sel) #388476ff

> color (#!4 & sel) #368476ff

> color (#!4 & sel) #348476ff

> color (#!4 & sel) #328476ff

> color (#!4 & sel) #318476ff

> color (#!4 & sel) #308476ff

> color (#!4 & sel) #318476ff

> color (#!4 & sel) #428476ff

> color (#!4 & sel) #568476ff

> color (#!4 & sel) #628476ff

> color (#!4 & sel) #668476ff

> color (#!4 & sel) #6b8476ff

> color (#!4 & sel) #6f8476ff

> color (#!4 & sel) #708476ff

> color (#!4 & sel) #698476ff

> color (#!4 & sel) #5f8476ff

> color (#!4 & sel) #588476ff

> color (#!4 & sel) #568476ff

> color (#!4 & sel) #548476ff

> color (#!4 & sel) #009051ff

> color (#!4 & sel) #005493ff

> color (#!4 & sel) #005491ff

> color (#!4 & sel) #00548fff

> color (#!4 & sel) #00548dff

> color (#!4 & sel) #00548bff

> color (#!4 & sel) #005487ff

> color (#!4 & sel) #005480ff

> color (#!4 & sel) #005475ff

> color (#!4 & sel) #005471ff

> color (#!4 & sel) #00546eff

> color (#!4 & sel) #00546cff

> color (#!4 & sel) #00546bff

> color (#!4 & sel) #00546aff

> color (#!4 & sel) #005470ff

> color (#!4 & sel) #005472ff

> color (#!4 & sel) #005473ff

> select add #4

22792 atoms, 23328 bonds, 32 pseudobonds, 2716 residues, 3 models selected  

> select subtract #4

Nothing selected  

> color #4 #005473ff

> color #4 #005673ff

> color #4 #005873ff

> color #4 #005973ff

> color #4 #005d73ff

> color #4 #006773ff

> color #4 #006873ff

> color #4 #006b73ff

> color #4 #006c73ff

> color #4 #006d73ff

> color #4 #006f73ff

> color #4 #007273ff

> color #4 #007473ff

> color #4 #007573ff

> color #4 #007673ff

> color #4 #007873ff

> color #4 #007a73ff

> undo

The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.  

> undo

> color #4 #009193ff

> select /B

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) #009193ff

> color (#!4 & sel) #009194ff

> color (#!4 & sel) #009196ff

> color (#!4 & sel) #009195ff

> color (#!4 & sel) #009194ff

> color (#!4 & sel) #009193ff

> color (#!4 & sel) #009191ff

> color (#!4 & sel) #00918fff

> color (#!4 & sel) #00918dff

> color (#!4 & sel) #00918aff

> color (#!4 & sel) #009188ff

> color (#!4 & sel) #009185ff

> color (#!4 & sel) #009184ff

> color (#!4 & sel) #009183ff

> color (#!4 & sel) #009181ff

> color (#!4 & sel) #00917eff

> color (#!4 & sel) #00917bff

> color (#!4 & sel) #009178ff

> color (#!4 & sel) #009177ff

> color (#!4 & sel) #009176ff

> color (#!4 & sel) #009175ff

> color (#!4 & sel) #009174ff

> color (#!4 & sel) #009171ff

> color (#!4 & sel) #00916fff

> color (#!4 & sel) #00916eff

> color (#!4 & sel) #008e6eff

> color (#!4 & sel) #008a6eff

> color (#!4 & sel) #00866eff

> color (#!4 & sel) #00826eff

> color (#!4 & sel) #00806eff

> color (#!4 & sel) #00806fff

> color (#!4 & sel) #00807eff

> color (#!4 & sel) #008082ff

> color (#!4 & sel) #008084ff

> color (#!4 & sel) #008089ff

> color (#!4 & sel) #008092ff

> color (#!4 & sel) #008097ff

> color (#!4 & sel) #00809aff

> color (#!4 & sel) #00809cff

> color (#!4 & sel) #00809dff

> color (#!4 & sel) #00809eff

> color (#!4 & sel) #0080a3ff

> color (#!4 & sel) #0080a6ff

> color (#!4 & sel) #0080a7ff

> color (#!4 & sel) #0080a8ff

> color (#!4 & sel) #0080a9ff

> color (#!4 & sel) #0080abff

> color (#!4 & sel) #0080adff

> color (#!4 & sel) #0080aeff

> color (#!4 & sel) #0080afff

> color (#!4 & sel) #0080b0ff

> color (#!4 & sel) #0080b1ff

> color (#!4 & sel) #0080b0ff

> color (#!4 & sel) #0080acff

> color (#!4 & sel) #0080a4ff

> color (#!4 & sel) #008098ff

> color (#!4 & sel) #00808cff

> color (#!4 & sel) #008089ff

> color (#!4 & sel) #008085ff

> color (#!4 & sel) #008083ff

> color (#!4 & sel) #008081ff

> color (#!4 & sel) #00807cff

> color (#!4 & sel) #008079ff

> color (#!4 & sel) #008077ff

> color (#!4 & sel) #008076ff

> color (#!4 & sel) #008074ff

> color (#!4 & sel) #008073ff

> color (#!4 & sel) #008072ff

> color (#!4 & sel) #008071ff

> color (#!4 & sel) #00806fff

> color (#!4 & sel) #00806eff

> color (#!4 & sel) #00806cff

> color (#!4 & sel) #00806bff

> color (#!4 & sel) #00806aff

> color (#!4 & sel) #007f6aff

> color (#!4 & sel) #007e6aff

> color (#!4 & sel) #007d6aff

> color (#!4 & sel) #00796aff

> color (#!4 & sel) #00736aff

> color (#!4 & sel) #006f6aff

> color (#!4 & sel) #006d6aff

> select add #4

22792 atoms, 23328 bonds, 32 pseudobonds, 2716 residues, 3 models selected  

> select subtract #4

Nothing selected  

> select /B

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) #2d6b6aff

> color (#!4 & sel) #2d6c6bff

> color (#!4 & sel) #2e6d6cff

> color (#!4 & sel) #2f706fff

> color (#!4 & sel) #307372ff

> color (#!4 & sel) #347b7aff

> color (#!4 & sel) #378281ff

> color (#!4 & sel) #398786ff

> color (#!4 & sel) #3b8b8aff

> color (#!4 & sel) #3d918fff

> color (#!4 & sel) #3e9493ff

> color (#!4 & sel) #419998ff

> color (#!4 & sel) #429c9aff

> color (#!4 & sel) #439e9dff

> color (#!4 & sel) #44a19fff

> color (#!4 & sel) #45a3a2ff

> color (#!4 & sel) #46a5a3ff

> color (#!4 & sel) #47a8a7ff

> color (#!4 & sel) #48aaa8ff

> color (#!4 & sel) #49adacff

> color (#!4 & sel) #49aeacff

> color (#!4 & sel) #4aafadff

> color (#!4 & sel) #4ab0aeff

> color (#!4 & sel) #4ab0afff

> color (#!4 & sel) #4cb3b1ff

> color (#!4 & sel) #4db7b5ff

> color (#!4 & sel) #4db8b6ff

> color (#!4 & sel) #4eb8b6ff

> color (#!4 & sel) #4eb9b7ff

> color (#!4 & sel) #4fbbb9ff

> color (#!4 & sel) #4fbcbbff

> color (#!4 & sel) #50bdbbff

> color (#!4 & sel) #51c0beff

> color (#!4 & sel) #52c1c0ff

> color (#!4 & sel) #52c2c0ff

> color (#!4 & sel) #50bdbcff

> color (#!4 & sel) #4db8b6ff

> color (#!4 & sel) #4bb2b1ff

> color (#!4 & sel) #4bb1b0ff

> color (#!4 & sel) #49aeacff

> color (#!4 & sel) #44a09fff

> color (#!4 & sel) #398786ff

> color (#!4 & sel) #388685ff

> color (#!4 & sel) #378381ff

> color (#!4 & sel) #36807eff

> color (#!4 & sel) #398685ff

> color (#!4 & sel) #398887ff

> color (#!4 & sel) #3a8a89ff

> color (#!4 & sel) #3b8b8aff

> color (#!4 & sel) #3a8a89ff

> color (#!4 & sel) #36807eff

> color (#!4 & sel) #337978ff

> color (#!4 & sel) #337877ff

> color (#!4 & sel) #327776ff

> color (#!4 & sel) #317372ff

> color (#!4 & sel) #307170ff

> color (#!4 & sel) #307271ff

> color (#!4 & sel) #307372ff

> color (#!4 & sel) #317574ff

> color (#!4 & sel) #327877ff

> color (#!4 & sel) #337a79ff

> color (#!4 & sel) #317a77ff

> color (#!4 & sel) #317a76ff

> color (#!4 & sel) #317a74ff

> color (#!4 & sel) #317a72ff

> color (#!4 & sel) #317a71ff

> color (#!4 & sel) #317a6fff

> color (#!4 & sel) #317a6eff

> color (#!4 & sel) #307a6dff

> color (#!4 & sel) #307a6cff

> color (#!4 & sel) #2f7a6aff

> color (#!4 & sel) #2f7a69ff

> color (#!4 & sel) #2f7a68ff

> color (#!4 & sel) #2e7a67ff

> color (#!4 & sel) #2e7a66ff

> color (#!4 & sel) #2e7a65ff

> color (#!4 & sel) #2d7a64ff

> color (#!4 & sel) #2d7a63ff

> color (#!4 & sel) #2d7a62ff

> color (#!4 & sel) #2d7a61ff

> color (#!4 & sel) #2c7a61ff

> color (#!4 & sel) #2c7a60ff

> color (#!4 & sel) #2c7a5fff

> color (#!4 & sel) #2b7a5eff

> color (#!4 & sel) #2b7a5dff

> color (#!4 & sel) #2c7d60ff

> color (#!4 & sel) #2d8062ff

> color (#!4 & sel) #2f8667ff

> color (#!4 & sel) #318c6bff

> color (#!4 & sel) #328d6cff

> color (#!4 & sel) #328f6dff

> color (#!4 & sel) #33906eff

> select add #4

22792 atoms, 23328 bonds, 32 pseudobonds, 2716 residues, 3 models selected  

> select subtract #4

Nothing selected  

> color #4 #56c3c7ff

> color #4 #48a4a7ff

> color #4 #54bfc3ff

> color #4 #51c3abff

> color #4 #51c3aaff

> select /B

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) #51c3aaff

> color (#!4 & sel) #51c1aaff

> color (#!4 & sel) #51b9aaff

> color (#!4 & sel) #51b0aaff

> color (#!4 & sel) #51a9aaff

> color (#!4 & sel) #51a8aaff

> color (#!4 & sel) #519faaff

> color (#!4 & sel) #519baaff

> color (#!4 & sel) #5196aaff

> color (#!4 & sel) #5191aaff

> color (#!4 & sel) #518eaaff

> color (#!4 & sel) #518daaff

> color (#!4 & sel) #5189aaff

> color (#!4 & sel) #5185aaff

> color (#!4 & sel) #5184aaff

> color (#!4 & sel) #518baaff

> color (#!4 & sel) #518ba9ff

> color (#!4 & sel) #518ba2ff

> color (#!4 & sel) #518b9dff

> color (#!4 & sel) #518b9aff

> color (#!4 & sel) #518b98ff

> color (#!4 & sel) #518b92ff

> color (#!4 & sel) #518b8bff

> color (#!4 & sel) #518b89ff

> color (#!4 & sel) #518b88ff

> color (#!4 & sel) #518b86ff

> color (#!4 & sel) #518b85ff

> color (#!4 & sel) #518b82ff

> color (#!4 & sel) #518b80ff

> color (#!4 & sel) #518280ff

> color (#!4 & sel) #518080ff

> color (#!4 & sel) #517680ff

> color (#!4 & sel) #517380ff

> color (#!4 & sel) #516f80ff

> color (#!4 & sel) #518080ff

> color (#!4 & sel) #508080ff

> color (#!4 & sel) #4b8080ff

> color (#!4 & sel) #488080ff

> color (#!4 & sel) #468080ff

> color (#!4 & sel) #438080ff

> color (#!4 & sel) #3f8080ff

> color (#!4 & sel) #3c8080ff

> color (#!4 & sel) #3a8080ff

> color (#!4 & sel) #398080ff

> color (#!4 & sel) #388080ff

> color (#!4 & sel) #378080ff

> color (#!4 & sel) #358080ff

> color (#!4 & sel) #348080ff

> color (#!4 & sel) #328080ff

> color (#!4 & sel) #308080ff

> color (#!4 & sel) #2f8080ff

> color (#!4 & sel) #2e8080ff

> color (#!4 & sel) #2d8080ff

> color (#!4 & sel) #2c8080ff

> color (#!4 & sel) #2a8080ff

> color (#!4 & sel) #298080ff

> color (#!4 & sel) #288080ff

> color (#!4 & sel) #268080ff

> color (#!4 & sel) #248080ff

> color (#!4 & sel) #228080ff

> color (#!4 & sel) #208080ff

> color (#!4 & sel) #1e8080ff

> color (#!4 & sel) #1d8080ff

> color (#!4 & sel) #1c8080ff

> select /C

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) #1c7f7fff

> select add #4

22792 atoms, 23328 bonds, 32 pseudobonds, 2716 residues, 3 models selected  

> select subtract #4

Nothing selected  

> color #4 byhetero

> select ::name=""UNL""

260 atoms, 276 bonds, 4 residues, 1 model selected  

> color sel #73fcd6ff

> color sel #73fa79ff

> color sel #7a81ffff

> color sel #00fdffff

> color sel #00fa92ff

> color sel #0096ffff

> color sel #7a81ffff

> color sel byhetero

> select add #4

22792 atoms, 23328 bonds, 32 pseudobonds, 2716 residues, 3 models selected  

> select subtract #4

Nothing selected  

> select ::name=""UNL""

260 atoms, 276 bonds, 4 residues, 1 model selected  

> color sel #73fdffff

> color sel #97f9fdff

> color sel #98f9feff

> color sel #98faffff

> color sel #9cfff2ff

> color sel #9dfff2ff

> color sel #9ffff3ff

> color sel #a0fff3ff

> color sel #a1fff3ff

> color sel #a5fff3ff

> color sel #a7fff3ff

> color sel #a8fff3ff

> color sel #b1fff3ff

> color sel #b5fff3ff

> color sel #b6fff3ff

> color sel #b7fff4ff

> color sel #b8fff4ff

> color sel #b9fff4ff

> color sel #bbfff3ff

> color sel #bcfff3ff

> color sel #bdfff2ff

> color sel #73fdffff

> color sel #93f1f5ff

> color sel #93f1f6ff

> color sel #93f1f5ff

> color sel #92eff4ff

> color sel #90ecf1ff

> color sel #8be4e8ff

> color sel #7ac8cbff

> color sel #79c6caff

> color sel #72bcbfff

> color sel #6db3b7ff

> color sel #69adb0ff

> color sel #67a9acff

> color sel #65a6a9ff

> color sel #65a5a9ff

> color sel #66a8abff

> color sel #6eb5b8ff

> color sel #81d4d8ff

> color sel #98faffff

> color sel #93ffdcff

> color sel #94ffddff

> color sel #94ffdfff

> color sel #95ffe3ff

> color sel #96ffe6ff

> color sel #96ffeaff

> color sel #95fff3ff

> color sel #94fff4ff

> color sel #94fff5ff

> color sel #94fff6ff

> color sel #94feffff

> color sel #94fcffff

> color sel #94f9ffff

> color sel #93f8ffff

> color sel #92f3ffff

> color sel #92f1ffff

> color sel #91f0ffff

> color sel #90e9ffff

> color sel #8fe8ffff

> color sel #8ee7ffff

> color sel #8ee6ffff

> color sel #8ee5ffff

> color sel #8ce1ffff

> color sel #8bdeffff

> color sel #8addffff

> color sel #88d9ffff

> color sel #87d7ffff

> color sel #86d6ffff

> color sel #85d3ffff

> color sel #86d2ffff

> color sel #86d1ffff

> color sel #85ceffff

> color sel #86cdffff

> color sel #86cbffff

> color sel #87caffff

> color sel #86caffff

> color sel #84caffff

> color sel #83caffff

> color sel #80caffff

> color sel #7ecaffff

> color sel #7ccaffff

> color sel #7bcbffff

> color sel #7acbffff

> color sel #7accffff

> color sel #7acdffff

> color sel #75cfffff

> color sel #74d0ffff

> color sel #71d0ffff

> color sel #70d0ffff

> color sel #6fd0ffff

> color sel #6bd0ffff

> color sel #6ad0ffff

> color sel #67d0ffff

> color sel #65d0ffff

> color sel #61d0ffff

> color sel #5fd0ffff

> color sel #5ed0ffff

> color sel #5cd0ffff

> color sel #5bd0ffff

> color sel #5ad0ffff

> color sel #57d0ffff

> color sel #56d0ffff

> color sel #55d0ffff

> color sel #53d0ffff

> color sel #52d0ffff

> color sel #51d0ffff

> color sel #4cd0ffff

> color sel #4bd0ffff

> color sel #4ad0ffff

> color sel #48d0ffff

> color sel #47d0ffff

> color sel #46d0ffff

> color sel #45d0ffff

> color sel #44d0ffff

> color sel #43d0ffff

> color sel #43cfffff

> color sel #42cfffff

> color sel #40cfffff

> color sel #3fceffff

> color sel #3eceffff

> color sel #3bcfffff

> color sel #3bd1ffff

> color sel #3cd2ffff

> color sel #3ad9ffff

> color sel #39daffff

> color sel #38dcffff

> color sel #37dfffff

> color sel #36e2ffff

> color sel #36e3ffff

> color sel #34e6ffff

> color sel #34e7ffff

> color sel #34e8ffff

> color sel #33e8ffff

> color sel #31edffff

> color sel #30edffff

> color sel #2cefffff

> color sel #2befffff

> color sel #2aefffff

> color sel #29f0ffff

> color sel #27f0ffff

> color sel #24f1ffff

> color sel #24f2ffff

> color sel #23f2ffff

> color sel #22f2ffff

> color sel #21f2ffff

> color sel #21f3ffff

> color sel #1ff3ffff

> color sel #1ff3f3ff

> color sel #1ff3efff

> color sel #1ff3ecff

> color sel #1ff3ebff

> color sel #1ff3e2ff

> color sel #1ff3dfff

> color sel #1ff3dcff

> color sel #1ff3daff

> color sel #1ff3d5ff

> color sel #1ff3d0ff

> color sel #1ff3ceff

> color sel #1ff3cbff

> color sel #1ff3caff

> color sel #1ff3c8ff

> color sel #1ff3c6ff

> color sel #1ff3c5ff

> color sel #1ff3c4ff

> color sel #7a81ffff

> undo

> color sel #76d6ffff

> color sel #7a81ffff

> color sel byhetero

> select add #4

22792 atoms, 23328 bonds, 32 pseudobonds, 2716 residues, 3 models selected  

> select subtract #4

Nothing selected  

> lighting soft

> ui tool show ""Side View""

> save ""/Users/bs18klrh/OneDrive - University of
> Leeds/Research_Postgrad/Papers/AM237:BTD/Figures/N_BTD_side.png"" width 2019
> height 1441 supersample 3 transparentBackground true

> show #!3 models

> save ""/Users/bs18klrh/OneDrive - University of
> Leeds/Research_Postgrad/Papers/AM237:BTD/Figures/N_BTD_side_withmap.png""
> width 2019 height 1441 supersample 3

> hide #!3 models

> save ""/Users/bs18klrh/OneDrive - University of
> Leeds/Research_Postgrad/Papers/AM237:BTD/Figures/N_BTD_top.png"" width 2019
> height 1441 supersample 3 transparentBackground true

> show #!3 models

> save ""/Users/bs18klrh/OneDrive - University of
> Leeds/Research_Postgrad/Papers/AM237:BTD/Figures/N_BTD_side_withmap.png""
> width 2019 height 1441 supersample 3

> hide #!3 models

> save ""/Users/bs18klrh/OneDrive - University of
> Leeds/Research_Postgrad/Papers/AM237:BTD/Figures/N_BTD_bottom.png"" width
> 2019 height 1441 supersample 3 transparentBackground true

> show #!3 models

> save ""/Users/bs18klrh/OneDrive - University of
> Leeds/Research_Postgrad/Papers/AM237:BTD/Figures/N_BTD_bottom_withmap.png""
> width 2019 height 1441 supersample 3

> hide #!4 models

> hide #!3 models

> show #!4 models

> save ""/Users/bs18klrh/OneDrive - University of
> Leeds/Research_Postgrad/Papers/AM237:BTD/ChimeraX sessions/Just N_BTD.cxs""

> open ""/Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/Papers/AM237:BTD/ChimeraX
> sessions/AM_BTD_nano session.cxs""

Opened AM237_nano_denmod_map.ccp4 as #2, grid size 167,167,197, pixel 0.74,
shown at level 1.4, step 1, values float32  
Opened nano_BTD_denmod_map_.ccp4 as #3, grid size 185,185,199, pixel 0.74,
shown at level 1.54, step 1, values float32  
opened ChimeraX session  

> hide #!3 models

> hide #!4 models

> hide #!2 models

> show #!2 models

> hide #!1 models

> hide #!2 models

> show #!3 models

> show #!4 models

> hide #!4 models

> show #!4 models

> show #!2 models

> hide #!3 models

> hide #!2 models

> select #4/A

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) #51c3aaff

> select #4/D

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) byhetero

> select #4/B

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) #1c7f7fff

> select #4/C

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> select add #4

22792 atoms, 23328 bonds, 32 pseudobonds, 2716 residues, 3 models selected  

> select subtract #4

Nothing selected  

> color #4 #1c7f7fcc

> color #4 #1c7f7fff

> select #4/A

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) #51c3aaff

> select #4/D

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) #52c3aaff

> select add #4

22792 atoms, 23328 bonds, 32 pseudobonds, 2716 residues, 3 models selected  

> select subtract #4

Nothing selected  

> color #4 byhetero

> select ::name=""UNL""

260 atoms, 276 bonds, 4 residues, 1 model selected  

> color sel #7a81ffff

> color sel byhetero

> select add #4

22792 atoms, 23328 bonds, 32 pseudobonds, 2716 residues, 3 models selected  

> select subtract #4

Nothing selected  

> show #!3 models

> show #!2 models

> show #!1 models

> hide #!2 models

> hide #!4 models

> show #!4 models

> hide #!3 models

> show atoms

> lighting simple

> show #!3 models

> show #!2 models

> hide #!3 models

> hide #!2 models

> lighting soft

> show #!2 models

> show #!3 models

> color #3 #96e4d966 models

> color #3 #009193ff models

> color #3 #00919341 models

> color #3 #0091934a models

> color #3 #0091934e models

> color #3 #00919365 models

> color #3 #0091935a models

> color #3 #00919359 models

> lighting simple

> lighting soft

> volume #3 level 1.851

> save ""/Users/bs18klrh/OneDrive - University of
> Leeds/Research_Postgrad/Papers/AM237:BTD/Figures/N_AM_overBTD_521.png"" width
> 2019 height 1441 supersample 3

> lighting simple

> lighting soft

> save ""/Users/bs18klrh/OneDrive - University of
> Leeds/Research_Postgrad/Papers/AM237:BTD/Figures/N_AM_overBTD_520.png"" width
> 2019 height 1441 supersample 3

> hide #!4 models

> show #!4 models

> lighting simple

> lighting soft

> save ""/Users/bs18klrh/OneDrive - University of
> Leeds/Research_Postgrad/Papers/AM237:BTD/Figures/N_AM_overBTD_519.png"" width
> 2019 height 1441 supersample 3

> open ""/Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/EM/Model_Building/For AB paper/AM237
> N/NanoAM237_addingligands_AM_2.pdb""

Summary of feedback from opening
/Users/bs18klrh/Library/CloudStorage/OneDrive-
UniversityofLeeds/Research_Postgrad/EM/Model_Building/For AB paper/AM237
N/NanoAM237_addingligands_AM_2.pdb  
---  
warnings | Cannot find LINK/SSBOND residue POV (498 )  
Cannot find LINK/SSBOND residue POV (313 )  
Cannot find LINK/SSBOND residue POV (498 )  
Cannot find LINK/SSBOND residue HIS (170 )  
Cannot find LINK/SSBOND atom ZN in residue AM2 /C:749  
14 messages similar to the above omitted  
  
Chain information for NanoAM237_addingligands_AM_2.pdb #5  
---  
Chain | Description  
A B C D | No description available  
  

> hide #!1 models

> show #!4-5 atoms

> hide #!4 models

> hide #!3 models

> close #1

> color #5 #000a5aff

> color #5 #a5a5ffff

> color #5 #5e97faff

> color #5 #ccb4f8ff

> select #4/A

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color #5 #d783ffff

> undo

> show #!4 models

> hide #!5 models

> hide #!2 models

> show #!5 models

> hide #!4 models

> select add #4

22792 atoms, 23328 bonds, 32 pseudobonds, 2716 residues, 3 models selected  

> select subtract #4

Nothing selected  

> select #5/A

5596 atoms, 5729 bonds, 3 pseudobonds, 674 residues, 2 models selected  

> color (#!5 & sel) #7a81ffff

> color (#!5 & sel) #d783ffff

> select #5/B

5596 atoms, 5729 bonds, 3 pseudobonds, 674 residues, 2 models selected  

> color (#!5 & sel) #ff85ffff

> color (#!5 & sel) #d783ffff

> select ::name=""AM2""

148 atoms, 160 bonds, 4 residues, 1 model selected  

> color sel #ff2f92ff

> select add #5

22384 atoms, 22916 bonds, 12 pseudobonds, 2696 residues, 2 models selected  

> select subtract #5

Nothing selected  

> color #5 byhetero

> show #!2 models

> show #!3 models

> show #!4 models

> save ""/Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/Papers/AM237:BTD/ChimeraX
> sessions/AM_BTD_nano session.cxs""

> lighting simple

> lighting soft

> save /Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/Papers/AM237:BTD/Figures/N_AM_overBTD_522.png
> width 2019 height 1441 supersample 3

> hide #!3 models

> hide #!2 models

> show #!3 models

> show #!2 models

> save /Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/Papers/AM237:BTD/Figures/N_AM_overBTD_518.png
> width 2019 height 1441 supersample 3

> lighting simple

> lighting soft

> save /Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/Papers/AM237:BTD/Figures/N_AM_overBTD_517.png
> width 2019 height 1441 supersample 3

> volume #3 level 1.392

> save /Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/Papers/AM237:BTD/Figures/N_AM_overBTD_516.png
> width 2019 height 1441 supersample 3

> lighting simple

> lighting soft

> save /Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/Papers/AM237:BTD/Figures/N_AM_overBTD_515.png
> width 2019 height 1441 supersample 3

> lighting simple

> lighting soft

> hide #!2 models

> show #!2 models

> save /Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/Papers/AM237:BTD/Figures/N_AM_overBTD_514.png
> width 2019 height 1441 supersample 3

> lighting simple

> lighting soft

> save /Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/Papers/AM237:BTD/Figures/N_AM_overBTD_512_631.png
> width 2019 height 1441 supersample 3

> lighting simple

> lighting soft

> volume #3 level 1.576

> ui tool show ""Hide Dust""

> surface dust #3 size 4.44

> save /Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/Papers/AM237:BTD/Figures/N_AM_overBTD_510_619.png
> width 2019 height 1441 supersample 3

> lighting soft

> lighting simple

> hide #!2 models

> show #!2 models

> lighting soft

> save /Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/Papers/AM237:BTD/Figures/N_AM_overBTD_509.png
> width 2019 height 1441 supersample 3

> lighting simple

> lighting soft

> lighting simple

> lighting soft

> hide #!2 models

> show #!2 models

> save /Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/Papers/AM237:BTD/Figures/N_AM_overBTD_508.png
> width 2019 height 1441 supersample 3

> lighting simple

> lighting soft

> save /Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/Papers/AM237:BTD/Figures/N_AM_overBTD_507.png
> width 2019 height 1441 supersample 3

> lighting simple

> lighting soft

> hide #!2 models

> show #!2 models

> save /Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/Papers/AM237:BTD/Figures/N_AM_overBTD_506.png
> width 936 height 668 supersample 3

> save /Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/Papers/AM237:BTD/Figures/N_AM_overBTD_506.png
> width 2019 height 1441 supersample 3

> lighting simple

> lighting soft

> hide #!2 models

> show #!2 models

> save /Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/Papers/AM237:BTD/Figures/N_AM_overBTD_496.png
> width 2019 height 1441 supersample 3

> hide #!2 models

> hide #!3 models

> lighting simple

> select #5/C

5596 atoms, 5729 bonds, 3 pseudobonds, 674 residues, 2 models selected  

> select ~sel & ##selected

16788 atoms, 17187 bonds, 9 pseudobonds, 2022 residues, 2 models selected  

> hide (#!5 & sel) target a

> cartoon hide (#!5 & sel)

> select #4/B

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> select ~sel & ##selected

17094 atoms, 17496 bonds, 24 pseudobonds, 2037 residues, 3 models selected  

> hide (#!4 & sel) target a

> cartoon hide (#!4 & sel)

> select : 503-533

1968 atoms, 2000 bonds, 248 residues, 2 models selected  

> select ~sel

43208 atoms, 44228 bonds, 44 pseudobonds, 5164 residues, 9 models selected  

> hide (#!4-5 & sel) target a

> cartoon hide (#!4-5 & sel)

> lighting soft

> save /Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/Papers/AM237:BTD/Figures/N_AM_overBTD_S5.png
> width 2019 height 1441 supersample 3 transparentBackground true

> select add #5

44192 atoms, 45236 bonds, 44 pseudobonds, 5288 residues, 9 models selected  

> select subtract #5

21808 atoms, 22320 bonds, 32 pseudobonds, 2592 residues, 7 models selected  

> select add #4

22792 atoms, 23328 bonds, 32 pseudobonds, 2716 residues, 7 models selected  

> select subtract #4

4 models selected  

> select subtract #3

2 models selected  

> select subtract #2

Nothing selected  

> select add #5

22384 atoms, 22916 bonds, 12 pseudobonds, 2696 residues, 2 models selected  

> select add #4

45176 atoms, 46244 bonds, 44 pseudobonds, 5412 residues, 5 models selected  

> show (#!4-5 & sel) target ab

> cartoon (#!4-5 & sel)

> select subtract #5

22792 atoms, 23328 bonds, 32 pseudobonds, 2716 residues, 3 models selected  

> select subtract #4

Nothing selected  

> ui tool show ""Side View""

> lighting simple

> show #!2 models

> show #!3 models

> lighting soft

> save /Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/Papers/AM237:BTD/Figures/N_AM_overBTD_AM_521.png
> width 2019 height 1441 supersample 3

> ui tool show Distances

> select add #5/C:749@CL02

1 atom, 1 residue, 1 model selected  

> select add #4/B:521@CD1

2 atoms, 2 residues, 2 models selected  

> select subtract #5/C:749@CL02

1 atom, 1 residue, 1 model selected  

> select add #5/C:749@CL02

2 atoms, 2 residues, 2 models selected  

> distance #4/B:521@CD1 #5/C:749@CL02

Distance between BTDNano_Model_2.pdb #4/B LEU 521 CD1 and
NanoAM237_addingligands_AM_2.pdb #5/C AM2 749 CL02: 2.182Å  

> select subtract #5/C:749@CL02

1 atom, 1 residue, 1 model selected  

> select subtract #4/B:521@CD1

Nothing selected  

> select add #5/C:749@CL02

1 atom, 1 residue, 1 model selected  

> select add #5/C:521@CD1

2 atoms, 2 residues, 1 model selected  

> distance #5/C:749@CL02 #5/C:521@CD1

Distance between NanoAM237_addingligands_AM_2.pdb #5/C AM2 749 CL02 and LEU
521 CD1: 3.870Å  


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> open ""/Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/Papers/AM237:BTD/ChimeraX
> sessions/AM_BTD_nano session.cxs""

Opened AM237_nano_denmod_map.ccp4 as #2, grid size 167,167,197, pixel 0.74,
shown at level 1.4, step 1, values float32  
Opened nano_BTD_denmod_map_.ccp4 as #3, grid size 185,185,199, pixel 0.74,
shown at level 1.85, step 1, values float32  
Log from Mon Sep 22 14:29:23 2025UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> open ""/Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/Papers/AM237:BTD/ChimeraX
> sessions/AM_BTD_nano session.cxs""

Opened AM237_nano_denmod_map.ccp4 as #2, grid size 167,167,197, pixel 0.74,
shown at level 1.4, step 1, values float32  
Opened nano_BTD_denmod_map_.ccp4 as #3, grid size 185,185,199, pixel 0.74,
shown at level 1.54, step 1, values float32  
Log from Wed Aug 27 11:40:08 2025UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open ""/Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/EM/Model_Building/For AB paper/AM237
> N/Ref_starting_model_real_space_refined_001.pdb""

Chain information for Ref_starting_model_real_space_refined_001.pdb #1  
---  
Chain | Description  
A B C D | No description available  
  

> open ""/Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/EM/Model_Building/For AB paper/AM237
> N/AM237_nano_denmod_map.ccp4""

Opened AM237_nano_denmod_map.ccp4 as #2, grid size 167,167,197, pixel 0.74,
shown at level 4.75, step 1, values float32  

> close #1

> open ""/Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/EM/Model_Building/For AB paper/AM237
> N/NanoAM237_addingligands_AM_2.pdb""

Summary of feedback from opening
/Users/bs18klrh/Library/CloudStorage/OneDrive-
UniversityofLeeds/Research_Postgrad/EM/Model_Building/For AB paper/AM237
N/NanoAM237_addingligands_AM_2.pdb  
---  
warnings | Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
16783 messages similar to the above omitted  
Cannot find LINK/SSBOND residue ASN (500 )  
Cannot find LINK/SSBOND residue TRP (315 )  
Cannot find LINK/SSBOND residue ASN (500 )  
Cannot find LINK/SSBOND residue ZN (751 )  
Cannot find LINK/SSBOND residue ZN (751 )  
18 messages similar to the above omitted  
  
Chain information for NanoAM237_addingligands_AM_2.pdb #1  
---  
Chain | Description  
A B C D | No description available  
  

> volume #2 level 1.462

> set bgColor white

> open ""/Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/EM/Model_Building/For AB paper/BTD
> N/BTDNano_Model_1_ligands_010.pdb""

Summary of feedback from opening
/Users/bs18klrh/Library/CloudStorage/OneDrive-
UniversityofLeeds/Research_Postgrad/EM/Model_Building/For AB paper/BTD
N/BTDNano_Model_1_ligands_010.pdb  
---  
warnings | Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
17089 messages similar to the above omitted  
  
Chain information for BTDNano_Model_1_ligands_010.pdb #3  
---  
Chain | Description  
A B C D | No description available  
  

> open ""/Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/EM/Model_Building/For AB paper/BTD
> N/BTDNano_Model_1_ligands.pdb""

Summary of feedback from opening
/Users/bs18klrh/Library/CloudStorage/OneDrive-
UniversityofLeeds/Research_Postgrad/EM/Model_Building/For AB paper/BTD
N/BTDNano_Model_1_ligands.pdb  
---  
warning | Cannot find LINK/SSBOND residue Y01 (798 )  
  
Chain information for BTDNano_Model_1_ligands.pdb #4  
---  
Chain | Description  
A B C D | No description available  
  

> hide #!2 models

> hide #!1 models

> hide #!3 models

> hide #!4 models

> show #!2 models

> show #!1 models

> volume #2 level 1.13

> open
> /Users/bs18klrh/Desktop/BTD_nano/RealSpaceRefine_11/BTDNano_Model_1_ligands_real_space_refined_010-coot-0_real_space_refined_011.pdb

Chain information for
BTDNano_Model_1_ligands_real_space_refined_010-coot-0_real_space_refined_011.pdb
#5  
---  
Chain | Description  
A B C D | No description available  
  

> hide #!2 models

> hide #!1 models

> dssp

> open
> /Users/bs18klrh/Desktop/BTD_nano/RealSpaceRefine_10/BTDNano_Model_1_ligands_real_space_refined_010.pdb

Chain information for BTDNano_Model_1_ligands_real_space_refined_010.pdb #6  
---  
Chain | Description  
A B C D | No description available  
  

> dssp

> hide #!5 models

> show #!5 models

> hide #!6 models

> open
> /Users/bs18klrh/Desktop/BTD_nano/BTDNano_Model_1_ligands_real_space_refined_010-coot-1.pdb

Summary of feedback from opening
/Users/bs18klrh/Desktop/BTD_nano/BTDNano_Model_1_ligands_real_space_refined_010-coot-1.pdb  
---  
warnings | Duplicate atom serial number found: 1  
Duplicate atom serial number found: 2  
Duplicate atom serial number found: 3  
Duplicate atom serial number found: 4  
Duplicate atom serial number found: 5  
17089 messages similar to the above omitted  
  
Chain information for
BTDNano_Model_1_ligands_real_space_refined_010-coot-1.pdb #7  
---  
Chain | Description  
A B C D | No description available  
  

> hide #!5 models

> dssp

> hide #!7 models

> open
> /Users/bs18klrh/Desktop/BTD_nano/RealSpaceRefine_12/BTDNano_Model_1_ligands_real_space_refined_010-coot-1_real_space_refined_012.pdb

Chain information for
BTDNano_Model_1_ligands_real_space_refined_010-coot-1_real_space_refined_012.pdb
#8  
---  
Chain | Description  
A B C D | No description available  
  

> dssp

> close #3-7

> show #!1 models

> open
> /Users/bs18klrh/Desktop/BTD_nano/ResolveCryoEM_7/nano_BTD_denmod_map_.ccp4

Opened nano_BTD_denmod_map_.ccp4 as #3, grid size 185,185,199, pixel 0.74,
shown at level 4.9, step 1, values float32  

> close #8

> open ""/Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/EM/Model_Building/For AB paper/BTD
> N/BTDNano_Model_2.pdb""

Chain information for BTDNano_Model_2.pdb #4  
---  
Chain | Description  
A B C D | No description available  
  

> select add #3

2 models selected  

> select add #4

22792 atoms, 23328 bonds, 32 pseudobonds, 2716 residues, 5 models selected  

> ui mousemode right ""rotate selected models""

> view matrix models
> #3,-0.90341,0.42462,-0.059581,292.24,0.42708,0.90346,-0.036842,-55.125,0.038186,-0.058729,-0.99754,410.06,#4,-0.90341,0.42462,-0.059581,292.24,0.42708,0.90346,-0.036842,-55.125,0.038186,-0.058729,-0.99754,410.06

> ui mousemode right ""translate selected models""

> view matrix models
> #3,-0.90341,0.42462,-0.059581,289.96,0.42708,0.90346,-0.036842,-53.26,0.038186,-0.058729,-0.99754,383.45,#4,-0.90341,0.42462,-0.059581,289.96,0.42708,0.90346,-0.036842,-53.26,0.038186,-0.058729,-0.99754,383.45

> view matrix models
> #3,-0.90341,0.42462,-0.059581,290.08,0.42708,0.90346,-0.036842,-56.025,0.038186,-0.058729,-0.99754,383.68,#4,-0.90341,0.42462,-0.059581,290.08,0.42708,0.90346,-0.036842,-56.025,0.038186,-0.058729,-0.99754,383.68

> view matrix models
> #3,-0.90341,0.42462,-0.059581,290.96,0.42708,0.90346,-0.036842,-52.864,0.038186,-0.058729,-0.99754,385.21,#4,-0.90341,0.42462,-0.059581,290.96,0.42708,0.90346,-0.036842,-52.864,0.038186,-0.058729,-0.99754,385.21

> view matrix models
> #3,-0.90341,0.42462,-0.059581,290.78,0.42708,0.90346,-0.036842,-54.831,0.038186,-0.058729,-0.99754,385.2,#4,-0.90341,0.42462,-0.059581,290.78,0.42708,0.90346,-0.036842,-54.831,0.038186,-0.058729,-0.99754,385.2

> view matrix models
> #3,-0.90341,0.42462,-0.059581,292.56,0.42708,0.90346,-0.036842,-54.636,0.038186,-0.058729,-0.99754,385.17,#4,-0.90341,0.42462,-0.059581,292.56,0.42708,0.90346,-0.036842,-54.636,0.038186,-0.058729,-0.99754,385.17

> select subtract #3

22792 atoms, 23328 bonds, 32 pseudobonds, 2716 residues, 3 models selected  

> select subtract #4

Nothing selected  

> ui tool show ""Fit in Map""

> show #!2 models

> fitmap #4 inMap #2

Fit molecule BTDNano_Model_2.pdb (#4) to map AM237_nano_denmod_map.ccp4 (#2)
using 22792 atoms  
average map value = 3.157, steps = 92  
shifted from previous position = 2.1  
rotated from previous position = 4.14 degrees  
atoms outside contour = 4544, contour level = 1.1304  
  
Position of BTDNano_Model_2.pdb (#4) relative to AM237_nano_denmod_map.ccp4
(#2) coordinates:  
Matrix rotation and translation  
-0.89703356 0.44196244 0.00003946 275.64068818  
0.44196244 0.89703355 0.00004569 -64.22831046  
-0.00001520 0.00005842 -1.00000000 379.79764870  
Axis 0.22689971 0.97391813 0.00003005  
Axis point 145.30491249 0.00000000 189.89782990  
Rotation angle (degrees) 179.99839228  
Shift along axis 0.00109055  
  

> fitmap #4 inMap #2

Fit molecule BTDNano_Model_2.pdb (#4) to map AM237_nano_denmod_map.ccp4 (#2)
using 22792 atoms  
average map value = 3.157, steps = 40  
shifted from previous position = 0.0132  
rotated from previous position = 0.00613 degrees  
atoms outside contour = 4549, contour level = 1.1304  
  
Position of BTDNano_Model_2.pdb (#4) relative to AM237_nano_denmod_map.ccp4
(#2) coordinates:  
Matrix rotation and translation  
-0.89703071 0.44196822 -0.00006693 275.65955990  
0.44196822 0.89703071 0.00003607 -64.22646289  
0.00007598 0.00000278 -1.00000000 379.80412711  
Axis -0.22690207 -0.97391758 -0.00000870  
Axis point 145.30432644 0.00000000 189.90754198  
Rotation angle (degrees) 179.99579636  
Shift along axis 0.00025303  
  

> fitmap #3 inMap #2

Fit map nano_BTD_denmod_map_.ccp4 in map AM237_nano_denmod_map.ccp4 using
68086 points  
correlation = 0.9806, correlation about mean = 0.6791, overlap = 2.264e+06  
steps = 84, shift = 2.39, angle = 4.14 degrees  
  
Position of nano_BTD_denmod_map_.ccp4 (#3) relative to
AM237_nano_denmod_map.ccp4 (#2) coordinates:  
Matrix rotation and translation  
-0.89717553 0.44167415 0.00006373 275.71792953  
0.44167416 0.89717553 0.00004592 -64.20037306  
-0.00003690 0.00006935 -1.00000000 379.82753939  
Axis 0.22674297 0.97395463 0.00003140  
Axis point 145.33713347 0.00000000 189.91114835  
Rotation angle (degrees) 179.99704004  
Shift along axis 0.00077624  
  

> volume #3 level 1.424

> hide #!2 models

> hide #!3 models

> show atoms

> hide atoms

> dssp

> hide #!4 models

> show #!2 models

> hide #!2 models

> select ::name=""AM2""

148 atoms, 160 bonds, 4 residues, 1 model selected  

> select
> ::name=""AM2""::name=""CA""::name=""POV""::name=""PTY""::name=""UNL""::name=""Y01""::name=""YZY""::name=""ZN""

1520 atoms, 1536 bonds, 52 residues, 2 models selected  

> show (#!1 & sel) target ab

> select clear

> select #1/A

5596 atoms, 5728 bonds, 3 pseudobonds, 674 residues, 2 models selected  

> color (#!1 & sel) #d783ffff

> select #1/B

5596 atoms, 5728 bonds, 3 pseudobonds, 674 residues, 2 models selected  

> color (#!1 & sel) #7a81ffff

> color (#!1 & sel) #d783ffff

> select #1/C

5596 atoms, 5728 bonds, 3 pseudobonds, 674 residues, 2 models selected  

> color (#!1 & sel) #ca8df8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #c98df8ff

> color (#!1 & sel) #c88df8ff

> color (#!1 & sel) #c78ff8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #c690f8ff

> color (#!1 & sel) #c590f8ff

> color (#!1 & sel) #c490f8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #c390f8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #c190f8ff

> color (#!1 & sel) #bf90f8ff

> color (#!1 & sel) #be90f8ff

> color (#!1 & sel) #bc90f8ff

> color (#!1 & sel) #ba8ff8ff

> color (#!1 & sel) #b88ff8ff

> color (#!1 & sel) #b790f8ff

> color (#!1 & sel) #b590f8ff

> color (#!1 & sel) #b490f8ff

> color (#!1 & sel) #b391f8ff

> color (#!1 & sel) #b491f8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #b695f8ff

> color (#!1 & sel) #b494f8ff

> color (#!1 & sel) #b295f8ff

> color (#!1 & sel) #b097f8ff

> color (#!1 & sel) #ae98f8ff

> color (#!1 & sel) #ac98f8ff

> color (#!1 & sel) #a898f8ff

> color (#!1 & sel) #a598f8ff

> color (#!1 & sel) #a298f8ff

> color (#!1 & sel) #a197f8ff

> color (#!1 & sel) #9e97f8ff

> color (#!1 & sel) #9c97f8ff

> color (#!1 & sel) #9a98f8ff

> color (#!1 & sel) #9898f8ff

> color (#!1 & sel) #9899f8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #999af8ff

> color (#!1 & sel) #b0a1f8ff

> color (#!1 & sel) #b8a5f8ff

> color (#!1 & sel) #bfa8f8ff

> color (#!1 & sel) #c4aaf8ff

> color (#!1 & sel) #c7abf8ff

> color (#!1 & sel) #ccacf8ff

> color (#!1 & sel) #d0adf8ff

> color (#!1 & sel) #d2adf8ff

> color (#!1 & sel) #d5adf8ff

> color (#!1 & sel) #d7adf8ff

> color (#!1 & sel) #daaef8ff

> color (#!1 & sel) #dcaef8ff

> color (#!1 & sel) #ddaef8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #e0aef8ff

> color (#!1 & sel) #e0aff8ff

> color (#!1 & sel) #e1aff8ff

> color (#!1 & sel) #e1b1f8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #e0b1f8ff

> color (#!1 & sel) #dfb0f8ff

> color (#!1 & sel) #d9a7f8ff

> color (#!1 & sel) #d6a2f8ff

> color (#!1 & sel) #d5a1f8ff

> color (#!1 & sel) #d5a0f8ff

> color (#!1 & sel) #d59ff8ff

> color (#!1 & sel) #d49ef8ff

> color (#!1 & sel) #d39cf8ff

> color (#!1 & sel) #d29bf8ff

> color (#!1 & sel) #d199f8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #d098f8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #d097f8ff

> color (#!1 & sel) #cf97f8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #d09cf8ff

> color (#!1 & sel) #d19ff8ff

> color (#!1 & sel) #d1a2f8ff

> color (#!1 & sel) #d1a5f8ff

> color (#!1 & sel) #d1a9f8ff

> color (#!1 & sel) #d1acf8ff

> color (#!1 & sel) #d1adf8ff

> color (#!1 & sel) #d1aef8ff

> color (#!1 & sel) #d1aff8ff

> color (#!1 & sel) #d0aef8ff

> color (#!1 & sel) #cfacf8ff

> color (#!1 & sel) #cea8f8ff

> color (#!1 & sel) #cea7f8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #cea6f8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #cea5f8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #cfa5f8ff

> color (#!1 & sel) #cfa7f8ff

> color (#!1 & sel) #cfa8f8ff

> color (#!1 & sel) #cfa9f8ff

> color (#!1 & sel) #cfaaf8ff

> color (#!1 & sel) #cfabf8ff

> color (#!1 & sel) #cfacf8ff

> color (#!1 & sel) #cfadf8ff

> color (#!1 & sel) #cfaef8ff

> color (#!1 & sel) #cfaff8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #cfb0f8ff

> color (#!1 & sel) #ceb0f8ff

> color (#!1 & sel) #cfb1f8ff

> color (#!1 & sel) #cfb2f8ff

> color (#!1 & sel) #ceb2f8ff

> color (#!1 & sel) #cfb3f8ff

> color (#!1 & sel) #ceb4f8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #cdb4f8ff

> color (#!1 & sel) #cbb3f8ff

> color (#!1 & sel) #cab1f8ff

> color (#!1 & sel) #c9b0f8ff

> color (#!1 & sel) #c8aef8ff

> color (#!1 & sel) #c8adf8ff

> color (#!1 & sel) #c8abf8ff

> color (#!1 & sel) #c8aaf8ff

> color (#!1 & sel) #c8a9f8ff

> color (#!1 & sel) #c8a8f8ff

> color (#!1 & sel) #c8a6f8ff

> color (#!1 & sel) #c7a6f8ff

> color (#!1 & sel) #c7a5f8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #c7a4f8ff

> color (#!1 & sel) #c7a3f8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #c7a2f8ff

> color (#!1 & sel) #c7a1f8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #c7a0f8ff

> color (#!1 & sel) #c4a5f8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #c4a6f8ff

> color (#!1 & sel) #c4a7f8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #c5aaf8ff

> color (#!1 & sel) #c6abf8ff

> color (#!1 & sel) #c7aef8ff

> color (#!1 & sel) #c8b0f8ff

> color (#!1 & sel) #c9b2f8ff

> color (#!1 & sel) #cab4f8ff

> color (#!1 & sel) #cbb6f8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #cbb7f8ff

> color (#!1 & sel) #cbb8f8ff

> color (#!1 & sel) #ccb9f8ff

> color (#!1 & sel) #ccbbf8ff

> color (#!1 & sel) #ccbcf8ff

> color (#!1 & sel) #ccbef8ff

> color (#!1 & sel) #ccbdf8ff

> color (#!1 & sel) #cbb7f8ff

> color (#!1 & sel) #cab3f8ff

> color (#!1 & sel) #cab1f8ff

> color (#!1 & sel) #c9aff8ff

> color (#!1 & sel) #c9aef8ff

> color (#!1 & sel) #c8aaf8ff

> color (#!1 & sel) #c7a9f8ff

> color (#!1 & sel) #c6a7f8ff

> color (#!1 & sel) #c6a5f8ff

> color (#!1 & sel) #c5a3f8ff

> color (#!1 & sel) #c5a1f8ff

> color (#!1 & sel) #c49ff8ff

> color (#!1 & sel) #c49df8ff

> color (#!1 & sel) #c49cf8ff

> color (#!1 & sel) #c39cf8ff

> color (#!1 & sel) #c49bf8ff

> color (#!1 & sel) #c49cf8ff

> color (#!1 & sel) #c9a6f8ff

> color (#!1 & sel) #caabf8ff

> color (#!1 & sel) #cbadf8ff

> color (#!1 & sel) #cbaff8ff

> color (#!1 & sel) #cbb1f8ff

> color (#!1 & sel) #cbb3f8ff

[Repeated 1 time(s)]

> color (#!1 & sel) #ccb4f8ff

> select #1/D

5596 atoms, 5728 bonds, 3 pseudobonds, 674 residues, 2 models selected  

> color (#!1 & sel) #ccb4f8ff

> select add #1

22384 atoms, 22912 bonds, 12 pseudobonds, 2696 residues, 2 models selected  

> select subtract #1

Nothing selected  

> select ::name=""AM2""

148 atoms, 160 bonds, 4 residues, 1 model selected  

> color sel #ff2f92ff

> select add #1

22384 atoms, 22912 bonds, 12 pseudobonds, 2696 residues, 2 models selected  

> select subtract #1

Nothing selected  

> color #1 byhetero

> color #2 #d783ffff models

> show #!2 models

> color #2 #f9caebff models

> color #2 #f9caeb66 models

> color #2 #c7caf566 models

> show #!1 atoms

> lighting soft

> ui tool show ""Side View""

> lighting simple

> color #2 #f4cbe666 models

> color #2 #d5bdf466 models

> hide #!1 atoms

> show #!3 models

> show #!4 models

> hide #!2 models

> hide #!1 models

> hide #!3 models

> select #4/A

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) #0096ffff

> color (#!4 & sel) #76d6ffff

> color (#!4 & sel) #0096ffff

> color (#!4 & sel) #3d93f7ff

> color (#!4 & sel) #3f94f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #4196f7ff

> color (#!4 & sel) #4498f7ff

> color (#!4 & sel) #469bf7ff

> color (#!4 & sel) #4a9ff7ff

> color (#!4 & sel) #4ca4f7ff

> color (#!4 & sel) #4ea8f7ff

> color (#!4 & sel) #50acf7ff

> color (#!4 & sel) #51adf7ff

> color (#!4 & sel) #52adf7ff

> color (#!4 & sel) #53aff7ff

> color (#!4 & sel) #54b0f7ff

> color (#!4 & sel) #56b2f7ff

> color (#!4 & sel) #56b3f7ff

> color (#!4 & sel) #58b4f7ff

> color (#!4 & sel) #5ab6f7ff

> color (#!4 & sel) #5bb7f7ff

> color (#!4 & sel) #5cb9f7ff

> color (#!4 & sel) #5dbaf7ff

> color (#!4 & sel) #5ebbf7ff

> color (#!4 & sel) #5ebcf7ff

> color (#!4 & sel) #61bff7ff

> color (#!4 & sel) #62c0f7ff

> color (#!4 & sel) #63c0f7ff

> color (#!4 & sel) #64c0f7ff

> color (#!4 & sel) #65c0f7ff

> color (#!4 & sel) #64bff7ff

> color (#!4 & sel) #60bcf7ff

> color (#!4 & sel) #5fbaf7ff

> color (#!4 & sel) #5eb8f7ff

> color (#!4 & sel) #5cb7f7ff

> color (#!4 & sel) #5cb6f7ff

> color (#!4 & sel) #5cb5f7ff

> color (#!4 & sel) #5bb4f7ff

> color (#!4 & sel) #5bb3f7ff

> color (#!4 & sel) #5ab2f7ff

> color (#!4 & sel) #59aff7ff

> color (#!4 & sel) #57acf7ff

> color (#!4 & sel) #55a8f7ff

> color (#!4 & sel) #55a7f7ff

> color (#!4 & sel) #53a4f7ff

> color (#!4 & sel) #519ff7ff

> color (#!4 & sel) #4e96f7ff

> color (#!4 & sel) #4e91f7ff

> color (#!4 & sel) #4e90f7ff

> color (#!4 & sel) #4e8ff7ff

> color (#!4 & sel) #4e8cf7ff

> color (#!4 & sel) #4d8bf7ff

> color (#!4 & sel) #4d89f7ff

> color (#!4 & sel) #4d87f7ff

> color (#!4 & sel) #4d86f7ff

> color (#!4 & sel) #4c84f7ff

> color (#!4 & sel) #4c82f7ff

> color (#!4 & sel) #4a7ff7ff

> color (#!4 & sel) #4a7df7ff

> color (#!4 & sel) #497df7ff

> color (#!4 & sel) #487bf7ff

> color (#!4 & sel) #477af7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #4477f7ff

> color (#!4 & sel) #4273f7ff

> color (#!4 & sel) #406df7ff

> color (#!4 & sel) #3e67f7ff

> color (#!4 & sel) #3d60f7ff

> color (#!4 & sel) #3d5cf7ff

> color (#!4 & sel) #3d59f7ff

> color (#!4 & sel) #3d56f7ff

> color (#!4 & sel) #3d55f7ff

> color (#!4 & sel) #3d54f7ff

> color (#!4 & sel) #3c54f7ff

> color (#!4 & sel) #3b52f7ff

> color (#!4 & sel) #3c50f7ff

> color (#!4 & sel) #3e4ef7ff

> color (#!4 & sel) #424df7ff

> color (#!4 & sel) #434cf7ff

> color (#!4 & sel) #444bf7ff

> color (#!4 & sel) #454cf7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #454df7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #434df7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #4352f7ff

> color (#!4 & sel) #496af7ff

> color (#!4 & sel) #4d79f7ff

> color (#!4 & sel) #5286f7ff

> color (#!4 & sel) #5790f7ff

> color (#!4 & sel) #5995f7ff

> color (#!4 & sel) #5a98f7ff

> color (#!4 & sel) #5b9af7ff

> color (#!4 & sel) #5b9bf7ff

> color (#!4 & sel) #5a9bf7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #589ef7ff

> color (#!4 & sel) #56a0f7ff

> color (#!4 & sel) #55a1f7ff

> color (#!4 & sel) #54a1f7ff

> color (#!4 & sel) #51a1f7ff

> color (#!4 & sel) #4da2f7ff

> color (#!4 & sel) #49a2f7ff

> color (#!4 & sel) #47a3f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #46a3f7ff

> color (#!4 & sel) #46a4f7ff

> color (#!4 & sel) #46a5f7ff

> color (#!4 & sel) #46a6f7ff

> color (#!4 & sel) #46a5f7ff

> color (#!4 & sel) #4aa0f7ff

> color (#!4 & sel) #528df7ff

> color (#!4 & sel) #5481f7ff

> color (#!4 & sel) #5377f7ff

> color (#!4 & sel) #516ff7ff

> color (#!4 & sel) #506af7ff

> color (#!4 & sel) #526df7ff

> color (#!4 & sel) #5f83f7ff

> color (#!4 & sel) #668ff7ff

> color (#!4 & sel) #6b95f7ff

> color (#!4 & sel) #6e98f7ff

> color (#!4 & sel) #709af7ff

> color (#!4 & sel) #729af7ff

> color (#!4 & sel) #7398f7ff

> color (#!4 & sel) #7496f7ff

> color (#!4 & sel) #7492f7ff

> color (#!4 & sel) #738ff7ff

> color (#!4 & sel) #728cf7ff

> color (#!4 & sel) #728bf7ff

> color (#!4 & sel) #728af7ff

> color (#!4 & sel) #7189f7ff

> color (#!4 & sel) #7188f7ff

> color (#!4 & sel) #7187f7ff

> color (#!4 & sel) #7186f7ff

> color (#!4 & sel) #7084f7ff

> color (#!4 & sel) #6f81f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #6e80f7ff

> color (#!4 & sel) #6e7ff7ff

> color (#!4 & sel) #6d7ef7ff

> color (#!4 & sel) #6d7df7ff

> color (#!4 & sel) #6b7bf7ff

> color (#!4 & sel) #6b7af7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #6a78f7ff

> color (#!4 & sel) #6977f7ff

> color (#!4 & sel) #6874f7ff

> color (#!4 & sel) #6873f7ff

> color (#!4 & sel) #6772f7ff

> color (#!4 & sel) #656df7ff

> color (#!4 & sel) #656cf7ff

> color (#!4 & sel) #646bf7ff

> color (#!4 & sel) #636bf7ff

> color (#!4 & sel) #636af7ff

> color (#!4 & sel) #6267f7ff

> color (#!4 & sel) #6163f7ff

> color (#!4 & sel) #5f61f7ff

> color (#!4 & sel) #5e5ff7ff

> color (#!4 & sel) #5e5ef7ff

> color (#!4 & sel) #5d5df7ff

> color (#!4 & sel) #5d5cf7ff

> color (#!4 & sel) #5e5cf7ff

> color (#!4 & sel) #5e5bf7ff

> select #4/B

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) #5e5bf7ff

> color (#!4 & sel) #5e64f7ff

> color (#!4 & sel) #5e6ff7ff

> color (#!4 & sel) #5e70f7ff

> color (#!4 & sel) #5e72f7ff

> color (#!4 & sel) #5e80f7ff

> color (#!4 & sel) #5e8af7ff

> color (#!4 & sel) #5e8ef7ff

> color (#!4 & sel) #5e90f7ff

> color (#!4 & sel) #5e92f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #5e8ef7ff

> color (#!4 & sel) #5e82f7ff

> color (#!4 & sel) #5e73f7ff

> color (#!4 & sel) #5e6ff7ff

> color (#!4 & sel) #5e6cf7ff

> color (#!4 & sel) #5e66f7ff

> color (#!4 & sel) #5e60f7ff

> color (#!4 & sel) #5e5cf7ff

> color (#!4 & sel) #5e5af7ff

> color (#!4 & sel) #5e56f7ff

> color (#!4 & sel) #5e54f7ff

> color (#!4 & sel) #5e51f7ff

> color (#!4 & sel) #5e4cf7ff

> color (#!4 & sel) #5e4af7ff

> color (#!4 & sel) #5e47f7ff

> color (#!4 & sel) #5e45f7ff

> color (#!4 & sel) #5e43f7ff

> color (#!4 & sel) #5e5cf7ff

> color (#!4 & sel) #5e75f7ff

> color (#!4 & sel) #5e76f7ff

> color (#!4 & sel) #5e6bf7ff

> color (#!4 & sel) #5e65f7ff

> color (#!4 & sel) #5e62f7ff

> color (#!4 & sel) #5e61f7ff

> color (#!4 & sel) #5e60f7ff

> color (#!4 & sel) #5e61f7ff

> color (#!4 & sel) #5e6bf7ff

> color (#!4 & sel) #5e71f7ff

> color (#!4 & sel) #5e74f7ff

> color (#!4 & sel) #5e76f7ff

> color (#!4 & sel) #5e79f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #5e7bf7ff

> color (#!4 & sel) #5e7df7ff

> color (#!4 & sel) #5e7ff7ff

> color (#!4 & sel) #5e80f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #5d80f7ff

> color (#!4 & sel) #5b80f7ff

> color (#!4 & sel) #5880f7ff

> color (#!4 & sel) #5680f7ff

> color (#!4 & sel) #5480f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #5380f7ff

> color (#!4 & sel) #5180f7ff

> color (#!4 & sel) #4f80f7ff

> color (#!4 & sel) #4d80f7ff

> color (#!4 & sel) #4c80f7ff

> color (#!4 & sel) #4b80f7ff

> color (#!4 & sel) #4a80f7ff

> color (#!4 & sel) #4b80f7ff

> color (#!4 & sel) #6780f7ff

> color (#!4 & sel) #6b80f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #7180f7ff

> color (#!4 & sel) #7680f7ff

> color (#!4 & sel) #7d80f7ff

> color (#!4 & sel) #8080f7ff

> color (#!4 & sel) #8880f7ff

> color (#!4 & sel) #8b80f7ff

> color (#!4 & sel) #8c80f7ff

> color (#!4 & sel) #8d80f7ff

[Repeated 2 time(s)]

> color (#!4 & sel) #8c80f7ff

[Repeated 2 time(s)]

> color (#!4 & sel) #8b80f7ff

> color (#!4 & sel) #8a80f7ff

> color (#!4 & sel) #8680f7ff

> color (#!4 & sel) #7e80f7ff

> color (#!4 & sel) #7180f7ff

> color (#!4 & sel) #6c80f7ff

> color (#!4 & sel) #6480f7ff

> color (#!4 & sel) #6180f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #6080f7ff

> color (#!4 & sel) #5f80f7ff

> color (#!4 & sel) #5d80f7ff

> color (#!4 & sel) #5b80f7ff

> color (#!4 & sel) #5a80f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #5980f7ff

> color (#!4 & sel) #5386f7ff

> color (#!4 & sel) #5586f7ff

> color (#!4 & sel) #5986f7ff

> color (#!4 & sel) #5f86f7ff

> color (#!4 & sel) #6186f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #6386f7ff

> color (#!4 & sel) #6486f7ff

> color (#!4 & sel) #6786f7ff

> color (#!4 & sel) #6985f7ff

> color (#!4 & sel) #6a85f7ff

> color (#!4 & sel) #6c85f7ff

> color (#!4 & sel) #6e84f7ff

> color (#!4 & sel) #6f84f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #6f83f7ff

> color (#!4 & sel) #7083f7ff

[Repeated 2 time(s)]

> color (#!4 & sel) #7183f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #7182f7ff

> color (#!4 & sel) #7181f7ff

> color (#!4 & sel) #7081f7ff

> color (#!4 & sel) #7080f7ff

> color (#!4 & sel) #707ff7ff

> color (#!4 & sel) #6f7df7ff

> color (#!4 & sel) #6f7cf7ff

> color (#!4 & sel) #6f7af7ff

> color (#!4 & sel) #7078f7ff

> color (#!4 & sel) #7277f7ff

> color (#!4 & sel) #7377f7ff

> color (#!4 & sel) #7477f7ff

> color (#!4 & sel) #7476f7ff

> color (#!4 & sel) #7577f7ff

> color (#!4 & sel) #7677f7ff

> color (#!4 & sel) #7678f7ff

> color (#!4 & sel) #7779f7ff

> color (#!4 & sel) #797bf7ff

> color (#!4 & sel) #7c7ef7ff

> color (#!4 & sel) #7e80f7ff

> color (#!4 & sel) #7f80f7ff

> color (#!4 & sel) #8081f7ff

> color (#!4 & sel) #8182f7ff

> color (#!4 & sel) #8282f7ff

> color (#!4 & sel) #8382f7ff

> color (#!4 & sel) #8383f7ff

> color (#!4 & sel) #8483f7ff

> color (#!4 & sel) #8586f7ff

> color (#!4 & sel) #858ef7ff

> color (#!4 & sel) #8297f7ff

> color (#!4 & sel) #819bf7ff

> color (#!4 & sel) #7f9cf7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #7e9cf7ff

> color (#!4 & sel) #7c9df7ff

> color (#!4 & sel) #799bf7ff

> color (#!4 & sel) #7296f7ff

> color (#!4 & sel) #6b90f7ff

> color (#!4 & sel) #6487f7ff

> color (#!4 & sel) #6183f7ff

> color (#!4 & sel) #5c7ef7ff

> color (#!4 & sel) #5a7bf7ff

> color (#!4 & sel) #5979f7ff

> color (#!4 & sel) #5778f7ff

> color (#!4 & sel) #5677f7ff

> color (#!4 & sel) #5475f7ff

> color (#!4 & sel) #5273f7ff

> color (#!4 & sel) #4f73f7ff

> color (#!4 & sel) #4d74f7ff

> color (#!4 & sel) #4c74f7ff

> color (#!4 & sel) #4c75f7ff

> color (#!4 & sel) #4b75f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #4772f7ff

> color (#!4 & sel) #446ff7ff

> color (#!4 & sel) #416bf7ff

> color (#!4 & sel) #4069f7ff

> color (#!4 & sel) #3e66f7ff

> color (#!4 & sel) #3c63f7ff

> color (#!4 & sel) #3b61f7ff

> color (#!4 & sel) #3a5cf7ff

> color (#!4 & sel) #395bf7ff

> color (#!4 & sel) #3959f7ff

> color (#!4 & sel) #3958f7ff

> color (#!4 & sel) #3957f7ff

> color (#!4 & sel) #3958f7ff

> undo

[Repeated 2 time(s)]

> select #4/A

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) #3f69f7ff

> color (#!4 & sel) #436af7ff

> color (#!4 & sel) #466cf7ff

> color (#!4 & sel) #5987f7ff

> color (#!4 & sel) #7ab4f7ff

> color (#!4 & sel) #81bef7ff

> color (#!4 & sel) #84c0f7ff

> color (#!4 & sel) #85c0f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #86bff7ff

> color (#!4 & sel) #87bef7ff

> color (#!4 & sel) #88bdf7ff

> color (#!4 & sel) #88bbf7ff

> color (#!4 & sel) #88b8f7ff

> color (#!4 & sel) #86b4f7ff

> color (#!4 & sel) #85b1f7ff

> color (#!4 & sel) #82aef7ff

> color (#!4 & sel) #80abf7ff

> color (#!4 & sel) #7ca7f7ff

> color (#!4 & sel) #79a3f7ff

> color (#!4 & sel) #77a1f7ff

> color (#!4 & sel) #759ff7ff

> color (#!4 & sel) #749ef7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #749df7ff

> color (#!4 & sel) #739cf7ff

> color (#!4 & sel) #729bf7ff

> color (#!4 & sel) #709af7ff

> color (#!4 & sel) #6f9af7ff

> color (#!4 & sel) #6e99f7ff

> color (#!4 & sel) #6d99f7ff

[Repeated 2 time(s)]

> color (#!4 & sel) #70a7f7ff

> color (#!4 & sel) #71adf7ff

> color (#!4 & sel) #72b0f7ff

> color (#!4 & sel) #72b2f7ff

> color (#!4 & sel) #73b3f7ff

> color (#!4 & sel) #73b6f7ff

> color (#!4 & sel) #73b9f7ff

> color (#!4 & sel) #73bbf7ff

> color (#!4 & sel) #73bef7ff

> color (#!4 & sel) #71c1f7ff

[Repeated 2 time(s)]

> color (#!4 & sel) #72c0f7ff

> color (#!4 & sel) #73bef7ff

> color (#!4 & sel) #74bbf7ff

> color (#!4 & sel) #76b8f7ff

> color (#!4 & sel) #77b2f7ff

> color (#!4 & sel) #75a8f7ff

> color (#!4 & sel) #72a2f7ff

> color (#!4 & sel) #719ef7ff

> color (#!4 & sel) #719df7ff

> color (#!4 & sel) #709bf7ff

> color (#!4 & sel) #7099f7ff

> color (#!4 & sel) #7097f7ff

> color (#!4 & sel) #7195f7ff

> color (#!4 & sel) #7494f7ff

> color (#!4 & sel) #7694f7ff

> color (#!4 & sel) #7892f7ff

> color (#!4 & sel) #7a92f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #7b92f7ff

> color (#!4 & sel) #7c91f7ff

> color (#!4 & sel) #7d91f7ff

> color (#!4 & sel) #7e90f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #7e91f7ff

> color (#!4 & sel) #7e92f7ff

> color (#!4 & sel) #7d93f7ff

> color (#!4 & sel) #7c93f7ff

> color (#!4 & sel) #7a93f7ff

> color (#!4 & sel) #7893f7ff

> color (#!4 & sel) #7793f7ff

> color (#!4 & sel) #7391f7ff

> color (#!4 & sel) #7090f7ff

> color (#!4 & sel) #6d8ef7ff

> color (#!4 & sel) #6b8cf7ff

> color (#!4 & sel) #6a8cf7ff

> color (#!4 & sel) #688bf7ff

> color (#!4 & sel) #678af7ff

> color (#!4 & sel) #668af7ff

> color (#!4 & sel) #6589f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #6389f7ff

> color (#!4 & sel) #6189f7ff

> color (#!4 & sel) #6089f7ff

> color (#!4 & sel) #5e88f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #5d89f7ff

> color (#!4 & sel) #5c89f7ff

> color (#!4 & sel) #5b89f7ff

> color (#!4 & sel) #5989f7ff

> color (#!4 & sel) #5889f7ff

> color (#!4 & sel) #568af7ff

> color (#!4 & sel) #558af7ff

> color (#!4 & sel) #548af7ff

> color (#!4 & sel) #528af7ff

> color (#!4 & sel) #508af7ff

> color (#!4 & sel) #4e8bf7ff

> color (#!4 & sel) #4d8bf7ff

> color (#!4 & sel) #4c8bf7ff

> color (#!4 & sel) #4b8bf7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #4a8bf7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #4a8cf7ff

> color (#!4 & sel) #4a8df7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #498ef7ff

> color (#!4 & sel) #4a8df7ff

> color (#!4 & sel) #4a8cf7ff

> color (#!4 & sel) #498bf7ff

> color (#!4 & sel) #498af7ff

> color (#!4 & sel) #4989f7ff

> color (#!4 & sel) #4988f7ff

> color (#!4 & sel) #4986f7ff

> color (#!4 & sel) #4c81f7ff

> color (#!4 & sel) #517df7ff

> color (#!4 & sel) #577bf7ff

> color (#!4 & sel) #5a78f7ff

> color (#!4 & sel) #5c77f7ff

> color (#!4 & sel) #5e75f7ff

> color (#!4 & sel) #6371f7ff

> color (#!4 & sel) #666df7ff

> color (#!4 & sel) #686bf7ff

> color (#!4 & sel) #6d6af7ff

> color (#!4 & sel) #736af7ff

> color (#!4 & sel) #786cf7ff

> color (#!4 & sel) #816bf7ff

> color (#!4 & sel) #8768f7ff

> color (#!4 & sel) #8c64f7ff

> color (#!4 & sel) #8e61f7ff

> color (#!4 & sel) #8d5ff7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #8562f7ff

> color (#!4 & sel) #6769f7ff

> color (#!4 & sel) #6575f7ff

> color (#!4 & sel) #6178f7ff

> color (#!4 & sel) #5d79f7ff

> color (#!4 & sel) #5778f7ff

> color (#!4 & sel) #5376f7ff

> color (#!4 & sel) #5075f7ff

> color (#!4 & sel) #4c73f7ff

> color (#!4 & sel) #4873f7ff

> color (#!4 & sel) #4271f7ff

> color (#!4 & sel) #1e6ef7ff

> color (#!4 & sel) #0071f7ff

> color (#!4 & sel) #0074f7ff

> color (#!4 & sel) #0071f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #006ff7ff

> color (#!4 & sel) #016ff7ff

> color (#!4 & sel) #026ff7ff

> color (#!4 & sel) #0470f7ff

> color (#!4 & sel) #0471f7ff

> color (#!4 & sel) #0672f7ff

> color (#!4 & sel) #0974f7ff

> color (#!4 & sel) #0b75f7ff

> color (#!4 & sel) #0f78f7ff

> color (#!4 & sel) #1078f7ff

> color (#!4 & sel) #137bf7ff

> color (#!4 & sel) #157df7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #1780f7ff

> color (#!4 & sel) #1883f7ff

> color (#!4 & sel) #1985f7ff

> color (#!4 & sel) #1b89f7ff

> color (#!4 & sel) #1d8cf7ff

> color (#!4 & sel) #1e8ff7ff

> color (#!4 & sel) #1d8ff7ff

> color (#!4 & sel) #1e91f7ff

> color (#!4 & sel) #1f93f7ff

> color (#!4 & sel) #1f94f7ff

> color (#!4 & sel) #1f98f7ff

> color (#!4 & sel) #2099f7ff

[Repeated 2 time(s)]

> color (#!4 & sel) #2197f7ff

> color (#!4 & sel) #2295f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #2294f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #2293f7ff

> color (#!4 & sel) #2292f7ff

> color (#!4 & sel) #2191f7ff

> color (#!4 & sel) #2091f7ff

> color (#!4 & sel) #2090f7ff

> color (#!4 & sel) #1f8ff7ff

> color (#!4 & sel) #1e8ef7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #1d8df7ff

> color (#!4 & sel) #1c8cf7ff

> color (#!4 & sel) #1c8bf7ff

> color (#!4 & sel) #1b8af7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #1b88f7ff

> color (#!4 & sel) #1a88f7ff

> color (#!4 & sel) #1a87f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #1a86f7ff

> color (#!4 & sel) #1986f7ff

> color (#!4 & sel) #1985f7ff

> color (#!4 & sel) #1884f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #1783f7ff

> color (#!4 & sel) #1681f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #1680f7ff

> color (#!4 & sel) #157ef7ff

> color (#!4 & sel) #167df7ff

> color (#!4 & sel) #167cf7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #157bf7ff

> color (#!4 & sel) #1579f7ff

> color (#!4 & sel) #1678f7ff

> color (#!4 & sel) #1677f7ff

> color (#!4 & sel) #1675f7ff

> color (#!4 & sel) #1774f7ff

> color (#!4 & sel) #1873f7ff

> color (#!4 & sel) #1972f7ff

> color (#!4 & sel) #1a72f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #1c73f7ff

> color (#!4 & sel) #217bf7ff

> color (#!4 & sel) #237ef7ff

> color (#!4 & sel) #2584f7ff

> color (#!4 & sel) #2685f7ff

> color (#!4 & sel) #2787f7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #2888f7ff

> color (#!4 & sel) #2783efff

[Repeated 1 time(s)]

> color (#!4 & sel) #2683eeff

> color (#!4 & sel) #2681eaff

> color (#!4 & sel) #2580e8ff

> color (#!4 & sel) #257ee5ff

> color (#!4 & sel) #247ce2ff

> color (#!4 & sel) #247adeff

> color (#!4 & sel) #2479ddff

> color (#!4 & sel) #2378daff

> color (#!4 & sel) #2376d7ff

> color (#!4 & sel) #2375d6ff

> color (#!4 & sel) #2275d4ff

> color (#!4 & sel) #2274d4ff

> color (#!4 & sel) #2273d2ff

> color (#!4 & sel) #2273d1ff

> color (#!4 & sel) #2272d0ff

> color (#!4 & sel) #2171ceff

> color (#!4 & sel) #216fcaff

> color (#!4 & sel) #206cc4ff

> color (#!4 & sel) #1e68bcff

> color (#!4 & sel) #1e64b7ff

> color (#!4 & sel) #1d62b3ff

> color (#!4 & sel) #1d61b1ff

> color (#!4 & sel) #1c61b0ff

> color (#!4 & sel) #1c60afff

> color (#!4 & sel) #1c5fadff

> color (#!4 & sel) #1b5ba6ff

> color (#!4 & sel) #174e8eff

> color (#!4 & sel) #134074ff

> color (#!4 & sel) #103866ff

> color (#!4 & sel) #0f345fff

> color (#!4 & sel) #0f3560ff

> color (#!4 & sel) #113867ff

> color (#!4 & sel) #14437aff

> color (#!4 & sel) #1e65b8ff

> color (#!4 & sel) #2889faff

> color (#!4 & sel) #298cffff

> color (#!4 & sel) #75fbf6ff

[Repeated 2 time(s)]

> color (#!4 & sel) #74faf7ff

[Repeated 1 time(s)]

> color (#!4 & sel) #74faf6ff

[Repeated 1 time(s)]

> color (#!4 & sel) #74f9f4ff

> color (#!4 & sel) #74faf4ff

> color (#!4 & sel) #74faf5ff

> color (#!4 & sel) #74faf4ff

> color (#!4 & sel) #76faeeff

> color (#!4 & sel) #76f1faff

> color (#!4 & sel) #75e7faff

> color (#!4 & sel) #71d3faff

> color (#!4 & sel) #66b7faff

> color (#!4 & sel) #5ea8faff

> color (#!4 & sel) #559afaff

> color (#!4 & sel) #4387faff

> color (#!4 & sel) #3c81faff

> color (#!4 & sel) #367efaff

> color (#!4 & sel) #347dfaff

> color (#!4 & sel) #327bfaff

> color (#!4 & sel) #2f7afaff

> color (#!4 & sel) #2d79faff

> color (#!4 & sel) #2c79faff

> color (#!4 & sel) #2b78faff

> color (#!4 & sel) #2978faff

[Repeated 1 time(s)]

> color (#!4 & sel) #297afaff

> color (#!4 & sel) #2e80faff

> color (#!4 & sel) #3187faff

> color (#!4 & sel) #338cfaff

> color (#!4 & sel) #3592faff

> color (#!4 & sel) #3695faff

> color (#!4 & sel) #3797faff

> color (#!4 & sel) #3697faff

[Repeated 1 time(s)]

> color (#!4 & sel) #3596faff

> color (#!4 & sel) #3394faff

> color (#!4 & sel) #3293faff

> color (#!4 & sel) #3191faff

> color (#!4 & sel) #2f8ffaff

> color (#!4 & sel) #2e8dfaff

> color (#!4 & sel) #2c8bfaff

> color (#!4 & sel) #2c8afaff

> color (#!4 & sel) #2c89faff

> color (#!4 & sel) #2b88faff

> color (#!4 & sel) #2b87faff

> select #4/C

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) #2b88faff

> color (#!4 & sel) #2b8dfaff

> color (#!4 & sel) #2b8ffaff

> color (#!4 & sel) #2b91faff

> color (#!4 & sel) #2b93faff

> color (#!4 & sel) #2b95faff

> color (#!4 & sel) #2b96faff

> color (#!4 & sel) #2b97faff

> color (#!4 & sel) #2b9afaff

> color (#!4 & sel) #2b9dfaff

> color (#!4 & sel) #2ba0faff

> color (#!4 & sel) #2ba3faff

> color (#!4 & sel) #2ba7faff

> color (#!4 & sel) #2ba9faff

> color (#!4 & sel) #2babfaff

> color (#!4 & sel) #2baefaff

> color (#!4 & sel) #2baffaff

> color (#!4 & sel) #2bb1faff

> color (#!4 & sel) #2bb3faff

> color (#!4 & sel) #2bb5faff

> color (#!4 & sel) #2bb7faff

> color (#!4 & sel) #2bb9faff

> color (#!4 & sel) #2bbcfaff

> color (#!4 & sel) #2bbefaff

> color (#!4 & sel) #2bc0faff

> color (#!4 & sel) #2bc2faff

> color (#!4 & sel) #2bc4faff

> color (#!4 & sel) #2bc6faff

> color (#!4 & sel) #2bc8faff

> color (#!4 & sel) #2bc9faff

[Repeated 1 time(s)]

> color (#!4 & sel) #2bcafaff

> color (#!4 & sel) #2bcbfaff

[Repeated 2 time(s)]

> color (#!4 & sel) #2bcafaff

> color (#!4 & sel) #2bc9faff

> color (#!4 & sel) #2bc7faff

> color (#!4 & sel) #2bc6faff

> color (#!4 & sel) #2bc4faff

> color (#!4 & sel) #2bc1faff

> color (#!4 & sel) #2bbefaff

> color (#!4 & sel) #2bbbfaff

> color (#!4 & sel) #2bb8faff

> color (#!4 & sel) #2bb6faff

> color (#!4 & sel) #2bb4faff

> color (#!4 & sel) #2bb3faff

[Repeated 2 time(s)]

> color (#!4 & sel) #2bb4faff

> color (#!4 & sel) #2bb6faff

> color (#!4 & sel) #2bb8faff

> color (#!4 & sel) #2bbafaff

> color (#!4 & sel) #2bbcfaff

> color (#!4 & sel) #2bbdfaff

> color (#!4 & sel) #2bbefaff

> color (#!4 & sel) #2bbffaff

> color (#!4 & sel) #2bc1faff

[Repeated 1 time(s)]

> color (#!4 & sel) #2bc2faff

[Repeated 1 time(s)]

> color (#!4 & sel) #2bc3faff

> color (#!4 & sel) #2bc4faff

[Repeated 1 time(s)]

> color (#!4 & sel) #2cc4faff

> color (#!4 & sel) #2dc4faff

> color (#!4 & sel) #2fc4faff

> color (#!4 & sel) #30c4faff

> color (#!4 & sel) #32c4faff

> color (#!4 & sel) #34c4faff

> color (#!4 & sel) #36c4faff

> color (#!4 & sel) #37c4faff

> color (#!4 & sel) #38c4faff

> color (#!4 & sel) #39c4faff

> color (#!4 & sel) #3ac4faff

[Repeated 1 time(s)]

> color (#!4 & sel) #3cc4faff

> color (#!4 & sel) #3ec4faff

[Repeated 1 time(s)]

> color (#!4 & sel) #3fc4faff

> color (#!4 & sel) #41c4faff

> color (#!4 & sel) #42c4faff

> color (#!4 & sel) #43c4faff

[Repeated 1 time(s)]

> color (#!4 & sel) #45c4faff

[Repeated 1 time(s)]

> color (#!4 & sel) #46c4faff

> color (#!4 & sel) #48c4faff

> color (#!4 & sel) #49c4faff

> color (#!4 & sel) #4bc4faff

> color (#!4 & sel) #4cc4faff

> color (#!4 & sel) #4ec4faff

> color (#!4 & sel) #50c4faff

> color (#!4 & sel) #52c4faff

> color (#!4 & sel) #54c4faff

> color (#!4 & sel) #55c4faff

> color (#!4 & sel) #57c4faff

> color (#!4 & sel) #5ac4faff

> color (#!4 & sel) #5bc4faff

> color (#!4 & sel) #5dc4faff

> color (#!4 & sel) #60c4faff

> color (#!4 & sel) #62c4faff

> color (#!4 & sel) #64c4faff

> color (#!4 & sel) #67c4faff

> color (#!4 & sel) #69c4faff

> color (#!4 & sel) #6bc4faff

> color (#!4 & sel) #6cc4faff

> color (#!4 & sel) #6dc4faff

> color (#!4 & sel) #6cc4faff

> color (#!4 & sel) #6ac4faff

> color (#!4 & sel) #68c4faff

> color (#!4 & sel) #65c4faff

> color (#!4 & sel) #60c4faff

> color (#!4 & sel) #50c4faff

> color (#!4 & sel) #49c4faff

> color (#!4 & sel) #45c4faff

> color (#!4 & sel) #42c4faff

> color (#!4 & sel) #41c4faff

> color (#!4 & sel) #3ec4faff

> color (#!4 & sel) #3cc4faff

> color (#!4 & sel) #39c4faff

> color (#!4 & sel) #37c4faff

> color (#!4 & sel) #36c4faff

> color (#!4 & sel) #35c4faff

> color (#!4 & sel) #33c4faff

> color (#!4 & sel) #30c4faff

> color (#!4 & sel) #2ec4faff

[Repeated 1 time(s)]

> color (#!4 & sel) #30c4faff

> color (#!4 & sel) #34c4faff

> color (#!4 & sel) #35c4faff

> color (#!4 & sel) #38c4faff

> color (#!4 & sel) #39c4faff

> color (#!4 & sel) #3ac4faff

[Repeated 1 time(s)]

> color (#!4 & sel) #3cc4faff

> color (#!4 & sel) #3ec4faff

> color (#!4 & sel) #3fc4faff

> color (#!4 & sel) #42c4faff

> color (#!4 & sel) #45c4faff

> color (#!4 & sel) #46c4faff

> color (#!4 & sel) #48c4faff

> color (#!4 & sel) #4ac4faff

> color (#!4 & sel) #4dc4faff

[Repeated 1 time(s)]

> color (#!4 & sel) #4ec4faff

> color (#!4 & sel) #50c4faff

> color (#!4 & sel) #4fc3faff

> color (#!4 & sel) #4fc3f9ff

> color (#!4 & sel) #4ec1f7ff

> color (#!4 & sel) #4dbff5ff

> color (#!4 & sel) #4dbef4ff

> color (#!4 & sel) #4cbdf2ff

> color (#!4 & sel) #4bbbefff

> color (#!4 & sel) #4bbaeeff

> color (#!4 & sel) #4ab8ecff

> color (#!4 & sel) #4ab6eaff

> color (#!4 & sel) #49b5e8ff

> color (#!4 & sel) #49b4e7ff

> color (#!4 & sel) #48b2e4ff

> color (#!4 & sel) #47b0e2ff

> color (#!4 & sel) #47afe0ff

> color (#!4 & sel) #46aedfff

> color (#!4 & sel) #46addeff

> color (#!4 & sel) #45acdcff

> color (#!4 & sel) #45aadaff

> color (#!4 & sel) #44a8d7ff

> color (#!4 & sel) #43a7d5ff

> color (#!4 & sel) #43a5d4ff

> color (#!4 & sel) #42a3d1ff

> color (#!4 & sel) #41a2cfff

> color (#!4 & sel) #40a0cdff

> color (#!4 & sel) #409fcbff

> color (#!4 & sel) #409ecbff

> select add #4

22792 atoms, 23328 bonds, 32 pseudobonds, 2716 residues, 3 models selected  

> select subtract #4

Nothing selected  

> select #4/D

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) #409ecbff

> color (#!4 & sel) #2b87faff

> select #4/C

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) #2d97faff

> color (#!4 & sel) #2e97faff

> color (#!4 & sel) #2e98faff

> color (#!4 & sel) #2f98faff

> color (#!4 & sel) #3198faff

> color (#!4 & sel) #3398faff

> color (#!4 & sel) #3598faff

> color (#!4 & sel) #3898faff

> color (#!4 & sel) #3b98faff

> color (#!4 & sel) #3e98faff

> color (#!4 & sel) #3f98faff

> color (#!4 & sel) #4199faff

> color (#!4 & sel) #4299faff

> color (#!4 & sel) #479bfaff

> color (#!4 & sel) #4b9cfaff

> color (#!4 & sel) #4d9dfaff

> color (#!4 & sel) #4f9efaff

> color (#!4 & sel) #52a0faff

> color (#!4 & sel) #54a1faff

> color (#!4 & sel) #56a2faff

[Repeated 1 time(s)]

> color (#!4 & sel) #57a2faff

> color (#!4 & sel) #58a3faff

> color (#!4 & sel) #5aa5faff

> color (#!4 & sel) #5ba5faff

> color (#!4 & sel) #5ca5faff

> color (#!4 & sel) #5ea6faff

> color (#!4 & sel) #61a8faff

> color (#!4 & sel) #66aafaff

> color (#!4 & sel) #67aafaff

[Repeated 1 time(s)]

> color (#!4 & sel) #69acfaff

> color (#!4 & sel) #6aadfaff

> color (#!4 & sel) #6badfaff

> color (#!4 & sel) #6caefaff

> color (#!4 & sel) #6caffaff

> color (#!4 & sel) #6daffaff

> color (#!4 & sel) #6fb0faff

> color (#!4 & sel) #6fb1faff

> color (#!4 & sel) #71b2faff

> color (#!4 & sel) #74b4faff

> color (#!4 & sel) #76b4faff

> color (#!4 & sel) #78b5faff

> color (#!4 & sel) #7ab6faff

> color (#!4 & sel) #7bb7faff

[Repeated 1 time(s)]

> color (#!4 & sel) #7cb7faff

> color (#!4 & sel) #7eb8faff

> select #4/C

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) #7eb8faff

[Repeated 3 time(s)]

> color (#!4 & sel) #7eb8fafd

> color (#!4 & sel) #7eb8fafb

[Repeated 1 time(s)]

> color (#!4 & sel) #7eb8fafe

> color (#!4 & sel) #7eb8faff

> select #4/A

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> select #4/C

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> select #4/B

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) #7eb8faff

> color (#!4 & sel) #7eb8fafe

> color (#!4 & sel) #7eb8fafb

> color (#!4 & sel) #7eb8faff

> select add #4

22792 atoms, 23328 bonds, 32 pseudobonds, 2716 residues, 3 models selected  

> select subtract #4

Nothing selected  

> select ::name=""UNL""

260 atoms, 276 bonds, 4 residues, 1 model selected  

> color sel #73fcd6ff

> select
> ::name=""AM2""::name=""CA""::name=""POV""::name=""PTY""::name=""UNL""::name=""Y01""::name=""YZY""::name=""ZN""

1520 atoms, 1536 bonds, 52 residues, 2 models selected  

> show (#!4 & sel) target ab

> select add #4

23424 atoms, 23968 bonds, 32 pseudobonds, 2740 residues, 4 models selected  

> select subtract #4

632 atoms, 640 bonds, 24 residues, 1 model selected  

> color #4 byhetero

> select #4/A

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) light sea green

> color (#!4 & sel) #009193ff

> select #4/D

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) #009193ff

> color (#!4 & sel) #009193fb

[Repeated 1 time(s)]

> color (#!4 & sel) #009193ff

> select #4/B

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) #409091ff

[Repeated 1 time(s)]

> color (#!4 & sel) #418f91ff

> color (#!4 & sel) #418d91ff

> color (#!4 & sel) #418b91ff

> color (#!4 & sel) #418a91ff

> color (#!4 & sel) #418991ff

> color (#!4 & sel) #418891ff

> color (#!4 & sel) #418791ff

> color (#!4 & sel) #418591ff

> color (#!4 & sel) #418491ff

[Repeated 1 time(s)]

> color (#!4 & sel) #418391ff

[Repeated 1 time(s)]

> color (#!4 & sel) #418291ff

[Repeated 1 time(s)]

> color (#!4 & sel) #418391ff

> color (#!4 & sel) #428891ff

> color (#!4 & sel) #418c91ff

> color (#!4 & sel) #408e91ff

> color (#!4 & sel) #409091ff

> color (#!4 & sel) #3f9191ff

> color (#!4 & sel) #3f9190ff

> color (#!4 & sel) #3e918fff

> color (#!4 & sel) #3d918eff

> color (#!4 & sel) #3c918dff

> color (#!4 & sel) #3c918bff

> color (#!4 & sel) #3c9189ff

[Repeated 1 time(s)]

> color (#!4 & sel) #3c9188ff

> color (#!4 & sel) #3c9187ff

[Repeated 1 time(s)]

> color (#!4 & sel) #3b9186ff

> color (#!4 & sel) #3b9185ff

> color (#!4 & sel) #3b9184ff

> color (#!4 & sel) #3b9183ff

> color (#!4 & sel) #3b9182ff

> color (#!4 & sel) #3a9180ff

> color (#!4 & sel) #3a917eff

> color (#!4 & sel) #3a917dff

> color (#!4 & sel) #39917dff

> color (#!4 & sel) #39917cff

> color (#!4 & sel) #38917bff

> color (#!4 & sel) #37917aff

> color (#!4 & sel) #369179ff

[Repeated 1 time(s)]

> color (#!4 & sel) #359179ff

> color (#!4 & sel) #349179ff

[Repeated 1 time(s)]

> color (#!4 & sel) #339179ff

[Repeated 1 time(s)]

> color (#!4 & sel) #329179ff

[Repeated 1 time(s)]

> color (#!4 & sel) #319179ff

[Repeated 1 time(s)]

> color (#!4 & sel) #309179ff

> color (#!4 & sel) #2e9178ff

> color (#!4 & sel) #2d9178ff

[Repeated 2 time(s)]

> color (#!4 & sel) #2c9177ff

> color (#!4 & sel) #2b9177ff

> color (#!4 & sel) #299175ff

> color (#!4 & sel) #279174ff

> color (#!4 & sel) #269173ff

[Repeated 2 time(s)]

> color (#!4 & sel) #259172ff

> color (#!4 & sel) #249171ff

[Repeated 2 time(s)]

> color (#!4 & sel) #249176ff

> color (#!4 & sel) #25917cff

> color (#!4 & sel) #279182ff

> color (#!4 & sel) #299186ff

> color (#!4 & sel) #2b918aff

> color (#!4 & sel) #2c918cff

> color (#!4 & sel) #2c918dff

> color (#!4 & sel) #2c918eff

> color (#!4 & sel) #2d918fff

> color (#!4 & sel) #2d9190ff

> color (#!4 & sel) #2d9191ff

> color (#!4 & sel) #2e9091ff

> color (#!4 & sel) #2e8f91ff

[Repeated 1 time(s)]

> color (#!4 & sel) #2e8e91ff

> color (#!4 & sel) #2e8e92ff

> color (#!4 & sel) #2f8f92ff

> color (#!4 & sel) #2f9194ff

> color (#!4 & sel) #309397ff

> color (#!4 & sel) #319699ff

> color (#!4 & sel) #32999dff

> color (#!4 & sel) #339ca0ff

> color (#!4 & sel) #339ea1ff

> color (#!4 & sel) #349fa2ff

> color (#!4 & sel) #349fa3ff

> color (#!4 & sel) #34a0a4ff

> color (#!4 & sel) #34a1a5ff

> color (#!4 & sel) #35a2a5ff

[Repeated 1 time(s)]

> color (#!4 & sel) #35a2a6ff

> color (#!4 & sel) #36a5a8ff

> color (#!4 & sel) #36a7abff

> color (#!4 & sel) #37a9acff

> color (#!4 & sel) #37a9adff

> color (#!4 & sel) #37aaaeff

> color (#!4 & sel) #38acb0ff

> color (#!4 & sel) #38adb1ff

> color (#!4 & sel) #39aeb2ff

> color (#!4 & sel) #39afb3ff

> color (#!4 & sel) #39b0b4ff

> color (#!4 & sel) #3ab1b5ff

> color (#!4 & sel) #3ab3b7ff

> color (#!4 & sel) #3bb5b9ff

> color (#!4 & sel) #3bb6baff

[Repeated 1 time(s)]

> color (#!4 & sel) #3bb6bbff

> color (#!4 & sel) #3cbabbff

> color (#!4 & sel) #3dbabbff

> color (#!4 & sel) #3ebabbff

> color (#!4 & sel) #40b9bbff

> color (#!4 & sel) #42b9bbff

> color (#!4 & sel) #45b8bbff

> color (#!4 & sel) #47b8bbff

> color (#!4 & sel) #4bb8bbff

> color (#!4 & sel) #4cb8bbff

> color (#!4 & sel) #4db8bbff

> color (#!4 & sel) #4fb8bbff

> color (#!4 & sel) #51b8bbff

> color (#!4 & sel) #52b7bbff

> color (#!4 & sel) #53b7bbff

> color (#!4 & sel) #54b7bbff

> color (#!4 & sel) #55b6bbff

[Repeated 1 time(s)]

> color (#!4 & sel) #56b6bbff

> color (#!4 & sel) #57b5bbff

> color (#!4 & sel) #58b5bbff

> color (#!4 & sel) #59b4bbff

> color (#!4 & sel) #5ab3bbff

> color (#!4 & sel) #5bb3bbff

> color (#!4 & sel) #5cb3bbff

> color (#!4 & sel) #5eb3bbff

> color (#!4 & sel) #62b2bbff

> color (#!4 & sel) #66b2bbff

> color (#!4 & sel) #69b2bbff

> color (#!4 & sel) #6ab2bbff

> color (#!4 & sel) #6bb2bbff

> color (#!4 & sel) #6cb2bbff

> color (#!4 & sel) #6cb1bbff

> color (#!4 & sel) #6dafbbff

> color (#!4 & sel) #6caebbff

> color (#!4 & sel) #6cacbbff

> color (#!4 & sel) #6baabbff

> color (#!4 & sel) #6ba6bbff

> color (#!4 & sel) #6ba4bbff

> color (#!4 & sel) #6ba2bbff

> color (#!4 & sel) #6ba1bbff

[Repeated 1 time(s)]

> color (#!4 & sel) #6aa0bbff

> color (#!4 & sel) #6b9fbbff

[Repeated 2 time(s)]

> color (#!4 & sel) #6ba6bbff

> color (#!4 & sel) #69abbbff

> color (#!4 & sel) #68adbbff

> color (#!4 & sel) #67b0bbff

> color (#!4 & sel) #66b1bbff

> color (#!4 & sel) #66b2bbff

> color (#!4 & sel) #64b4bbff

> color (#!4 & sel) #63b6bbff

> color (#!4 & sel) #62b8bbff

> color (#!4 & sel) #61b9bbff

> color (#!4 & sel) #60babbff

> color (#!4 & sel) #5fbbbaff

[Repeated 1 time(s)]

> color (#!4 & sel) #5ebbb9ff

> color (#!4 & sel) #5dbbb8ff

> color (#!4 & sel) #5cbbb8ff

> color (#!4 & sel) #59bbb8ff

> color (#!4 & sel) #57bbb8ff

> color (#!4 & sel) #55bbb8ff

> color (#!4 & sel) #53bbb8ff

> color (#!4 & sel) #52bbb9ff

[Repeated 1 time(s)]

> color (#!4 & sel) #51bbb9ff

[Repeated 1 time(s)]

> color (#!4 & sel) #50bbb8ff

[Repeated 1 time(s)]

> color (#!4 & sel) #4fbbb9ff

> color (#!4 & sel) #4ebbb9ff

> color (#!4 & sel) #4dbbbaff

[Repeated 2 time(s)]

> color (#!4 & sel) #4bbbbaff

> color (#!4 & sel) #4abbb9ff

> color (#!4 & sel) #4abbb8ff

> color (#!4 & sel) #49bbb8ff

[Repeated 1 time(s)]

> color (#!4 & sel) #48bbb7ff

> color (#!4 & sel) #47bbb6ff

[Repeated 1 time(s)]

> color (#!4 & sel) #46bbb5ff

> color (#!4 & sel) #45bbb4ff

[Repeated 1 time(s)]

> color (#!4 & sel) #44bbb4ff

> color (#!4 & sel) #44bbb3ff

[Repeated 1 time(s)]

> color (#!4 & sel) #43bbb2ff

[Repeated 1 time(s)]

> color (#!4 & sel) #43bab1ff

> color (#!4 & sel) #41b4acff

> color (#!4 & sel) #40b2a9ff

> select add #4

22792 atoms, 23328 bonds, 32 pseudobonds, 2716 residues, 3 models selected  

> select subtract #4

Nothing selected  

> select add #4

22792 atoms, 23328 bonds, 32 pseudobonds, 2716 residues, 3 models selected  

> select subtract #4

Nothing selected  

> select #4/C

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) #40b2a9ff

> color (#!4 & sel) #40b2a9fb

> color (#!4 & sel) #40b2a9ef

[Repeated 1 time(s)]

> color (#!4 & sel) #40b2a9f2

[Repeated 1 time(s)]

> color (#!4 & sel) #40b2a9ff

> select add #4

22792 atoms, 23328 bonds, 32 pseudobonds, 2716 residues, 3 models selected  

> select subtract #4

Nothing selected  

> select
> ::name=""AM2""::name=""CA""::name=""POV""::name=""PTY""::name=""UNL""::name=""Y01""::name=""YZY""::name=""ZN""

1520 atoms, 1536 bonds, 52 residues, 2 models selected  

> select clear

> color #4 byhetero

> select ::name=""UNL""

260 atoms, 276 bonds, 4 residues, 1 model selected  

> color sel #73fcd6ff

> color sel byhetero

> select add #4

22792 atoms, 23328 bonds, 32 pseudobonds, 2716 residues, 3 models selected  

> select subtract #4

Nothing selected  

> color #3 #009193ff models

> show #!3 models

> color #3 #43a1a3ff models

> color #3 #5bdddfff models

> color #3 #5bdddf66 models

> color #3 #92d0df66 models

> show #!2 models

> show #!1 models

> save ""/Users/bs18klrh/OneDrive - University of
> Leeds/Research_Postgrad/Papers/AM237:BTD/ChimeraX sessions/AM_BTD_nano
> session.cxs""

> select
> ::name=""AM2""::name=""CA""::name=""POV""::name=""PTY""::name=""UNL""::name=""Y01""::name=""YZY""::name=""ZN""

1520 atoms, 1536 bonds, 52 residues, 2 models selected  

> show sel target ab

> select add #4

23424 atoms, 23968 bonds, 32 pseudobonds, 2740 residues, 4 models selected  

> select subtract #4

632 atoms, 640 bonds, 24 residues, 1 model selected  

> select add #1

22384 atoms, 22912 bonds, 12 pseudobonds, 2696 residues, 2 models selected  

> select subtract #1

Nothing selected  

> hide #!3 models

> show #!3 models

> hide #!4 models

> show #!4 models

> hide #!3 models

> hide #!4 models

> volume #2 level 0.9812

> show #!3 models

> show #!4 models

> hide #!2 models

> hide #!1 models

> show #!2 models

> show #!1 models

> ui tool show ""Side View""

> hide #!3 models

> show #!3 models

> volume #3 level 0.6068

> volume #3 level 1.545

> volume #2 level 1.399

> lighting soft

> save ""/Users/bs18klrh/OneDrive - University of
> Leeds/Research_Postgrad/Papers/AM237:BTD/ChimeraX sessions/AM_BTD_nano
> session.cxs""

——— End of log from Wed Aug 27 11:40:08 2025 ———

opened ChimeraX session  

> hide #!3 models

> hide #!4 models

> hide #!2 models

> show #!2 models

> hide #!1 models

> hide #!2 models

> show #!3 models

> show #!4 models

> hide #!4 models

> show #!4 models

> show #!2 models

> hide #!3 models

> hide #!2 models

> select #4/A

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) #51c3aaff

> select #4/D

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) byhetero

> select #4/B

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) #1c7f7fff

> select #4/C

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> select add #4

22792 atoms, 23328 bonds, 32 pseudobonds, 2716 residues, 3 models selected  

> select subtract #4

Nothing selected  

> color #4 #1c7f7fcc

> color #4 #1c7f7fff

> select #4/A

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) #51c3aaff

> select #4/D

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color (#!4 & sel) #52c3aaff

> select add #4

22792 atoms, 23328 bonds, 32 pseudobonds, 2716 residues, 3 models selected  

> select subtract #4

Nothing selected  

> color #4 byhetero

> select ::name=""UNL""

260 atoms, 276 bonds, 4 residues, 1 model selected  

> color sel #7a81ffff

> color sel byhetero

> select add #4

22792 atoms, 23328 bonds, 32 pseudobonds, 2716 residues, 3 models selected  

> select subtract #4

Nothing selected  

> show #!3 models

> show #!2 models

> show #!1 models

> hide #!2 models

> hide #!4 models

> show #!4 models

> hide #!3 models

> show atoms

> lighting simple

> show #!3 models

> show #!2 models

> hide #!3 models

> hide #!2 models

> lighting soft

> show #!2 models

> show #!3 models

> color #3 #96e4d966 models

> color #3 #009193ff models

> color #3 #00919341 models

> color #3 #0091934a models

> color #3 #0091934e models

> color #3 #00919365 models

> color #3 #0091935a models

> color #3 #00919359 models

> lighting simple

[Repeated 1 time(s)]

> lighting soft

> volume #3 level 1.851

> save ""/Users/bs18klrh/OneDrive - University of
> Leeds/Research_Postgrad/Papers/AM237:BTD/Figures/N_AM_overBTD_521.png"" width
> 2019 height 1441 supersample 3

> lighting simple

> lighting soft

> save ""/Users/bs18klrh/OneDrive - University of
> Leeds/Research_Postgrad/Papers/AM237:BTD/Figures/N_AM_overBTD_520.png"" width
> 2019 height 1441 supersample 3

> hide #!4 models

> show #!4 models

> lighting simple

> lighting soft

> save ""/Users/bs18klrh/OneDrive - University of
> Leeds/Research_Postgrad/Papers/AM237:BTD/Figures/N_AM_overBTD_519.png"" width
> 2019 height 1441 supersample 3

> open ""/Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/EM/Model_Building/For AB paper/AM237
> N/NanoAM237_addingligands_AM_2.pdb""

Summary of feedback from opening
/Users/bs18klrh/Library/CloudStorage/OneDrive-
UniversityofLeeds/Research_Postgrad/EM/Model_Building/For AB paper/AM237
N/NanoAM237_addingligands_AM_2.pdb  
---  
warnings | Cannot find LINK/SSBOND residue POV (498 )  
Cannot find LINK/SSBOND residue POV (313 )  
Cannot find LINK/SSBOND residue POV (498 )  
Cannot find LINK/SSBOND residue HIS (170 )  
Cannot find LINK/SSBOND atom ZN in residue AM2 /C:749  
14 messages similar to the above omitted  
  
Chain information for NanoAM237_addingligands_AM_2.pdb #5  
---  
Chain | Description  
A B C D | No description available  
  

> hide #!1 models

> show #!4-5 atoms

> hide #!4 models

> hide #!3 models

> close #1

> color #5 #000a5aff

> color #5 #a5a5ffff

> color #5 #5e97faff

> color #5 #ccb4f8ff

> select #4/A

5698 atoms, 5832 bonds, 8 pseudobonds, 679 residues, 3 models selected  

> color #5 #d783ffff

> undo

> show #!4 models

> hide #!5 models

> hide #!2 models

> show #!5 models

> hide #!4 models

> select add #4

22792 atoms, 23328 bonds, 32 pseudobonds, 2716 residues, 3 models selected  

> select subtract #4

Nothing selected  

> select #5/A

5596 atoms, 5729 bonds, 3 pseudobonds, 674 residues, 2 models selected  

> color (#!5 & sel) #7a81ffff

> color (#!5 & sel) #d783ffff

> select #5/B

5596 atoms, 5729 bonds, 3 pseudobonds, 674 residues, 2 models selected  

> color (#!5 & sel) #ff85ffff

> color (#!5 & sel) #d783ffff

> select ::name=""AM2""

148 atoms, 160 bonds, 4 residues, 1 model selected  

> color sel #ff2f92ff

> select add #5

22384 atoms, 22916 bonds, 12 pseudobonds, 2696 residues, 2 models selected  

> select subtract #5

Nothing selected  

> color #5 byhetero

> show #!2 models

> show #!3 models

> show #!4 models

> save ""/Users/bs18klrh/Library/CloudStorage/OneDrive-
> UniversityofLeeds/Research_Postgrad/Papers/AM237:BTD/ChimeraX
> sessions/AM_BTD_nano session.cxs""

——— End of log from Mon Sep 22 14:29:23 2025 ———

opened ChimeraX session  




OpenGL version: 4.1 Metal - 89.4
OpenGL renderer: Apple M3
OpenGL vendor: Apple

Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: Mac
      Model Identifier: Mac15,3
      Model Number: Z1C8000FDB/A
      Chip: Unknown
      Total Number of Cores: 8 (4 performance and 4 efficiency)
      Memory: 16 GB
      System Firmware Version: 13822.1.2
      OS Loader Version: 11881.140.96

Software:

    System Software Overview:

      System Version: macOS 15.7 (24G222)
      Kernel Version: Darwin 24.6.0
      Time since boot: 14 hours, 10 minutes

Graphics/Displays:

    Apple M3:

      Chipset Model: Apple M3
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 10
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-in Liquid Retina XDR Display
          Resolution: 3024 x 1964 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal
        PLX2283H-DP:
          Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
          UI Looks like: 1920 x 1080 @ 60.00Hz
          Mirror: Off
          Online: Yes


Installed Packages:
    alabaster: 0.7.16
    appdirs: 1.4.4
    appnope: 0.1.4
    asttokens: 2.4.1
    Babel: 2.15.0
    beautifulsoup4: 4.12.3
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 1.2.1
    certifi: 2023.11.17
    cftime: 1.6.4
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.17
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.5
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.7
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.57.1
    ChimeraX-AtomicLibrary: 14.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.4.6
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.12.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.7
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.6
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.8
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.3
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2.4
    ChimeraX-DiffPlot: 1.0
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.10
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.3
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7.1
    ChimeraX-MedicalToolbar: 1.0.3
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.17
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13.5
    ChimeraX-PDB: 2.7.5
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PhenixUI: 1.3.7
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.1
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.4.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.0.15
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StarMap: 1.2.15
    ChimeraX-StdCommands: 1.16.5
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.39.1
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.3
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    contourpy: 1.2.1
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 3.0.10
    debugpy: 1.8.1
    decorator: 5.1.1
    docutils: 0.20.1
    executing: 2.0.1
    filelock: 3.13.4
    fonttools: 4.53.0
    funcparserlib: 2.0.0a0
    glfw: 2.7.0
    grako: 3.16.5
    h5py: 3.11.0
    html2text: 2024.2.26
    idna: 3.7
    ihm: 1.0
    imagecodecs: 2024.1.1
    imagesize: 1.4.1
    ipykernel: 6.29.2
    ipython: 8.21.0
    ipywidgets: 8.1.3
    jedi: 0.19.1
    jinja2: 3.1.4
    jupyter-client: 8.6.0
    jupyter-core: 5.7.2
    jupyterlab-widgets: 3.0.11
    kiwisolver: 1.4.5
    line-profiler: 4.1.2
    lxml: 5.2.1
    lz4: 4.3.3
    MarkupSafe: 2.1.5
    matplotlib: 3.8.4
    matplotlib-inline: 0.1.7
    msgpack: 1.0.8
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.0
    numpy: 1.26.4
    openvr: 1.26.701
    packaging: 23.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pexpect: 4.9.0
    pillow: 10.3.0
    pip: 24.0
    pkginfo: 1.10.0
    platformdirs: 4.2.2
    prompt-toolkit: 3.0.47
    psutil: 5.9.8
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pygments: 2.17.2
    pynmrstar: 3.3.4
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.3401
    pyparsing: 3.1.2
    pyproject-hooks: 1.1.0
    PyQt6-commercial: 6.6.1
    PyQt6-Qt6: 6.6.3
    PyQt6-sip: 13.6.0
    PyQt6-WebEngine-commercial: 6.6.0
    PyQt6-WebEngine-Qt6: 6.6.3
    pyqtgraph: 0.13.7
    python-dateutil: 2.9.0.post0
    pytz: 2024.1
    pyzmq: 26.0.3
    qtconsole: 5.5.1
    QtPy: 2.4.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.13.0
    Send2Trash: 1.8.3
    SEQCROW: 1.8.14
    setuptools: 69.5.1
    setuptools-scm: 8.0.4
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.5
    sphinx: 7.2.6
    sphinx-autodoc-typehints: 2.0.1
    sphinxcontrib-applehelp: 1.0.8
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.6
    sphinxcontrib-htmlhelp: 2.0.5
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.7
    sphinxcontrib-serializinghtml: 1.1.10
    stack-data: 0.6.3
    superqt: 0.6.3
    tables: 3.8.0
    tcia-utils: 1.5.1
    tifffile: 2024.1.30
    tinyarray: 1.2.4
    tornado: 6.4.1
    traitlets: 5.14.2
    typing-extensions: 4.12.2
    tzdata: 2024.1
    urllib3: 2.2.1
    wcwidth: 0.2.13
    webcolors: 1.13
    wheel: 0.43.0
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.11
}}}
"	defect	assigned	normal		Window Toolkit								all	ChimeraX