id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 1855 Can't set 'vertices' attribute on Drawing sean.connell@… Conrad Huang "{{{ The following bug report has been submitted: Platform: Linux-3.10.0-957.10.1.el7.x86_64-x86_64-with-centos-7.6.1810-Core ChimeraX Version: 0.8 (2018-12-17) Description load ISOLDE Log: Startup Messages --- warning | 'clip' is a prefix of an existing command 'clipper' note | available bundle cache has not been initialized yet UCSF ChimeraX version: 0.8 (2018-12-17) How to cite UCSF ChimeraX > toolshed show ISOLDE Traceback (most recent call last): File ""/opt/UCSF/ChimeraX/lib/python3.6/site- packages/chimerax/core/toolshed/info.py"", line 579, in start_tool ti = api._api_caller.start_tool(api, session, self, tool_info) File ""/opt/UCSF/ChimeraX/lib/python3.6/site- packages/chimerax/core/toolshed/__init__.py"", line 1188, in start_tool return cls._get_func(api, ""start_tool"")(session, ti.name) File ""/home/CICBIOGUNE/sconnell/.local/share/ChimeraX/0.8/site- packages/chimerax/isolde/__init__.py"", line 29, in start_tool return tools.get_singleton(session, ISOLDE_ToolUI, 'ISOLDE', create=True) File ""/opt/UCSF/ChimeraX/lib/python3.6/site-packages/chimerax/core/tools.py"", line 214, in get_singleton tinst = tool_class(session, tool_name, **kw) File ""/home/CICBIOGUNE/sconnell/.local/share/ChimeraX/0.8/site- packages/chimerax/isolde/tool.py"", line 166, in __init__ self.isolde = isolde.Isolde(self) File ""/home/CICBIOGUNE/sconnell/.local/share/ChimeraX/0.8/site- packages/chimerax/isolde/isolde.py"", line 310, in __init__ self.omega_validator = validation.OmegaValidator(self._annotations) File ""/home/CICBIOGUNE/sconnell/.local/share/ChimeraX/0.8/site- packages/chimerax/isolde/validation.py"", line 687, in __init__ self._initialize_drawings() File ""/home/CICBIOGUNE/sconnell/.local/share/ChimeraX/0.8/site- packages/chimerax/isolde/validation.py"", line 708, in _initialize_drawings d.vertices = numpy.zeros([0,3],numpy.float32) File ""/opt/UCSF/ChimeraX/lib/python3.6/site- packages/chimerax/core/graphics/drawing.py"", line 228, in __setattr__ super(Drawing, self).__setattr__(key, value) AttributeError: can't set attribute During handling of the above exception, another exception occurred: Traceback (most recent call last): File ""/opt/UCSF/ChimeraX/lib/python3.6/site-packages/chimerax/ui/gui.py"", line 941, in run(ses, ""toolshed show %s"" % quote_if_necessary(tool_name))) File ""/opt/UCSF/ChimeraX/lib/python3.6/site- packages/chimerax/core/commands/run.py"", line 31, in run results = command.run(text, log=log) File ""/opt/UCSF/ChimeraX/lib/python3.6/site- packages/chimerax/core/commands/cli.py"", line 2587, in run result = ci.function(session, **kw_args) File ""/opt/UCSF/ChimeraX/lib/python3.6/site- packages/chimerax/core/commands/toolshed.py"", line 337, in toolshed_show bi.start_tool(session, tool_name) File ""/opt/UCSF/ChimeraX/lib/python3.6/site- packages/chimerax/core/toolshed/info.py"", line 585, in start_tool ""start_tool() failed for tool %s in bundle %s:\n%s"" % (tool_name, self.name, str(e))) chimerax.core.toolshed.ToolshedError: start_tool() failed for tool ISOLDE in bundle ChimeraX-ISOLDE: can't set attribute chimerax.core.toolshed.ToolshedError: start_tool() failed for tool ISOLDE in bundle ChimeraX-ISOLDE: can't set attribute File ""/opt/UCSF/ChimeraX/lib/python3.6/site- packages/chimerax/core/toolshed/info.py"", line 585, in start_tool ""start_tool() failed for tool %s in bundle %s:\n%s"" % (tool_name, self.name, str(e))) See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 418.56 OpenGL renderer: Quadro K4000/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation }}} " defect closed normal Tool Shed fixed Tom Goddard Tristan Croll all ChimeraX