id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
184	seg vault deleting atoms	Greg Couch	Eric Pettersen	"Starting ChimeraX and executing the test program gives a segmentation fault:
{{{
gregc@whimsey:~/src/chimerax$ ChimeraX.app/bin/ChimeraX 
Vector smash protection is enabled.
Fatal Python error: Segmentation fault

Thread 0x00007f5971850700 (most recent call first):
  File ""/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/threading.py"", line 297 in wait
  File ""/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/threading.py"", line 556 in wait
  File ""/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/threading.py"", line 1187 in run
  File ""/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/threading.py"", line 923 in _bootstrap_inner
  File ""/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/threading.py"", line 891 in _bootstrap

Current thread 0x00007f5a1c1bd700 (most recent call first):
  File ""<string>"", line 5 in delete
  File ""/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/site-packages/chimera/core/commands/delete.py"", line 12 in delete
  File ""/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/site-packages/chimera/core/commands/cli.py"", line 1714 in execute
  File ""/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/site-packages/chimera/core/commands/run.py"", line 22 in run
  File ""/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/site-packages/chimera/test/test.py"", line 102 in run_commands
  File ""/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/site-packages/chimera/core/commands/cli.py"", line 1714 in execute
  File ""/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/site-packages/chimera/cmd_line/gui.py"", line 121 in on_enter
  File ""/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/site-packages/wx/core.py"", line 1893 in MainLoop
  File ""/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/site-packages/chimera/core/ui/gui.py"", line 98 in event_loop
  File ""/home/gregc/src/chimerax/ChimeraX.app/lib/python3.5/site-packages/ChimeraX_main.py"", line 414 in init
  File ""__main__.py"", line 3 in <module>
Segmentation fault (core dumped)
}}}"	defect	closed	blocker		Graphics		worksforme		Tom Goddard Greg Couch				all	chimera