id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 18381 Crash in garbage collection chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-14.6.1-x86_64-i386-64bit ChimeraX Version: 1.8rc202405102050 (2024-05-10 20:50:33 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Thread 0x0000700031dfa000 (most recent call first): File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 579 in _handle_results File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x0000700030df7000 (most recent call first): File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 531 in _handle_tasks File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000070002fdf4000 (most recent call first): File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/selectors.py"", line 415 in select File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/connection.py"", line 930 in wait File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 502 in _wait_for_updates File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 522 in _handle_workers File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000070002edf1000 (most recent call first): File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000070002ddee000 (most recent call first): File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000070002cdeb000 (most recent call first): File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000070002bde8000 (most recent call first): File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000070002ade5000 (most recent call first): File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x0000700029de2000 (most recent call first): File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x0000700028ddf000 (most recent call first): File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x0000700012bf9000 (most recent call first): File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x00007000255cd000 (most recent call first): File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 579 in _handle_results File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x00007000245ca000 (most recent call first): File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 531 in _handle_tasks File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x00007000235c7000 (most recent call first): File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/selectors.py"", line 415 in select File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/connection.py"", line 930 in wait File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 502 in _wait_for_updates File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 522 in _handle_workers File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x00007000225c4000 (most recent call first): File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x00007000215c1000 (most recent call first): File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x00007000205be000 (most recent call first): File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000070001f5bb000 (most recent call first): File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000070001e5b8000 (most recent call first): File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000070001d5b5000 (most recent call first): File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000070001c5b2000 (most recent call first): File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Thread 0x000070001b5af000 (most recent call first): File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/multiprocessing/pool.py"", line 114 in worker File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 975 in run File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap Current thread 0x00007ff85e6b3dc0 (most recent call first): Garbage-collecting File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/molobject.py"", line 2020 in save_state File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/structure.py"", line 219 in take_snapshot File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/atomic/structure.py"", line 1418 in take_snapshot File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/session.py"", line 296 in process File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/session.py"", line 273 in discovery File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/session.py"", line 646 in save File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/session.py"", line 922 in save File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core_formats/__init__.py"", line 95 in save File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/save_command/cmd.py"", line 101 in provider_save File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/cli.py"", line 3209 in run File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/save_command/cmd.py"", line 86 in cmd_save File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/cli.py"", line 3209 in run File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/commands/run.py"", line 49 in run File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/save_command/dialog.py"", line 62 in display File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/save_command/dialog.py"", line 138 in show_save_file_dialog File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/save_command/dialog.py"", line 127 in File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 285 in event_loop File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1006 in init File ""/Applications/ChimeraX-1.8-rc2024.05.10.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1169 in File """", line 88 in _run_code File """", line 198 in _run_module_as_main Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, 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All rights reserved. > open ""/Users/praneetha/Documents/Lab Stuff/PDC NDs/Illustrsations PDCs and > PDEs/neuPDC.cxs"" Log from Fri Apr 5 00:17:00 2024UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. > open ""/Users/praneetha/Documents/Lab Stuff/Illustrsations PDCs and > PDEs/PDC.cxs"" Log from Tue Oct 10 14:58:47 2023UCSF ChimeraX version: 1.6.1 (2023-05-09) © 2016-2023 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/praneetha/Downloads/dna_ring.after.pdb format pdb Chain information for dna_ring.after.pdb #1 --- Chain | Description S | No description available > ui tool show ""Build Structure"" Populating font family aliases took 268 ms. Replace uses of missing font family ""Cambria"" with one that exists to avoid this cost. > build start peptide 4F DWFKAFYDKVAEKFKEAFG -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 rotLib Dunbrack Chain information for 4F #2 --- Chain | Description A | No description available > select add #2 167 atoms, 173 bonds, 19 residues, 1 model selected > ui mousemode right ""rotate selected models"" > view matrix models > #2,0.91857,0.052357,-0.39177,0.18954,-0.12881,0.97673,-0.17149,0.2932,0.37367,0.20799,0.90394,-0.84175 > ui mousemode right ""translate selected models"" > view matrix models > #2,0.91857,0.052357,-0.39177,22.002,-0.12881,0.97673,-0.17149,-61.285,0.37367,0.20799,0.90394,-0.84175 > build start peptide 4F_2 DWFKAFYDKVAEKFKEAFG -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 rotLib Dunbrack Chain information for 4F_2 #3 --- Chain | Description A | No description available > view matrix models > #2,0.91857,0.052357,-0.39177,21.932,-0.12881,0.97673,-0.17149,-61.724,0.37367,0.20799,0.90394,-0.84175 > select subtract #2 Nothing selected > select add #3 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models #3,1,0,0,71.363,0,1,0,-17.582,0,0,1,0 > ui mousemode right ""rotate selected models"" > view matrix models > #3,0.99755,-0.069975,0,71.376,0.069975,0.99755,0,-17.736,0,0,1,0 > view matrix models > #3,0.99988,0.015212,0,71.362,-0.015212,0.99988,0,-17.549,0,0,1,0 > view matrix models > #3,0.978,0.0010188,-0.20861,71.42,-0.02243,0.99471,-0.10029,-17.528,0.20741,0.10277,0.97284,-0.46688 > ui mousemode right ""translate selected models"" > view matrix models > #3,0.978,0.0010188,-0.20861,69.668,-0.02243,0.99471,-0.10029,-19.317,0.20741,0.10277,0.97284,-0.46688 > ui mousemode right ""rotate selected models"" > view matrix models > #3,0.9719,-0.13483,-0.19296,69.696,0.11134,0.98553,-0.12784,-19.609,0.20741,0.10277,0.97284,-0.46688 > view matrix models > #3,0.94929,-0.26133,-0.17478,69.759,0.23627,0.95976,-0.15176,-19.88,0.20741,0.10277,0.97284,-0.46688 > ui mousemode right ""translate selected models"" > view matrix models > #3,0.94929,-0.26133,-0.17478,66.98,0.23627,0.95976,-0.15176,-18.314,0.20741,0.10277,0.97284,-0.46688 > ui mousemode right ""rotate selected models"" > view matrix models > #3,0.87664,-0.27118,-0.39746,67.151,0.33082,0.93952,0.088654,-18.53,0.34938,-0.2092,0.91333,-0.74214 > ui mousemode right ""translate selected models"" > view matrix models > #3,0.87664,-0.27118,-0.39746,65.268,0.33082,0.93952,0.088654,-15.671,0.34938,-0.2092,0.91333,-0.74214 > ui mousemode right ""rotate selected models"" > view matrix models > #3,-0.056347,-0.21835,-0.97424,67.34,-0.22261,0.95398,-0.20094,-14.442,0.97328,0.20555,-0.10236,-2.1199 > ui mousemode right ""translate selected models"" > view matrix models > #3,-0.056347,-0.21835,-0.97424,55.549,-0.22261,0.95398,-0.20094,-21.705,0.97328,0.20555,-0.10236,-2.1199 > view matrix models > #3,-0.056347,-0.21835,-0.97424,56.134,-0.22261,0.95398,-0.20094,-21.229,0.97328,0.20555,-0.10236,-2.1199 > ui mousemode right ""rotate selected models"" > view matrix models > #3,0.097229,-0.1415,-0.98515,55.787,-0.35847,0.91843,-0.16729,-20.927,0.92846,0.36941,0.038576,-2.0453 > ui mousemode right ""translate selected models"" > view matrix models > #3,0.097229,-0.1415,-0.98515,57.679,-0.35847,0.91843,-0.16729,-22.927,0.92846,0.36941,0.038576,-2.0453 > select subtract #3 Nothing selected > build start peptide 4F_3 DWFKAFYDKVAEKFKEAFG -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 rotLib Dunbrack Chain information for 4F_3 #4 --- Chain | Description A | No description available > ui mousemode right ""translate selected models"" > select add #4 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models #4,1,0,0,74.45,0,1,0,-17.853,0,0,1,0.035612 > ui mousemode right ""rotate selected models"" > view matrix models > #4,0.99793,0.064327,-0.00012831,74.448,-0.064327,0.99793,4.1312e-06,-17.711,0.00012831,4.1312e-06,1,0.035329 > view matrix models > #4,0.63262,-0.77446,0.0015448,75.345,0.77446,0.63262,0.00073282,-19.517,-0.0015448,0.00073282,1,0.038931 > view matrix models > #4,0.56078,-0.63387,-0.53266,75.51,0.76987,0.63593,0.053758,-19.51,0.30466,-0.44023,0.84462,-0.57952 > view matrix models > #4,0.51422,-0.51473,-0.68602,75.605,0.78963,0.59633,0.14445,-19.552,0.33474,-0.61599,0.7131,-0.62072 > ui mousemode right ""translate selected models"" > view matrix models > #4,0.51422,-0.51473,-0.68602,61.522,0.78963,0.59633,0.14445,-15.22,0.33474,-0.61599,0.7131,-0.62936 > select add #3 334 atoms, 346 bonds, 38 residues, 2 models selected > select subtract #4 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #3,0.097229,-0.1415,-0.98515,57.62,-0.35847,0.91843,-0.16729,-24.052,0.92846,0.36941,0.038576,-2.0431 > view matrix models > #3,0.097229,-0.1415,-0.98515,57.687,-0.35847,0.91843,-0.16729,-24.15,0.92846,0.36941,0.038576,-2.0429 > ui mousemode right ""rotate selected models"" > view matrix models > #3,0.0064753,-0.19016,-0.98173,57.892,-0.62971,0.76187,-0.15172,-23.537,0.77681,0.61919,-0.11481,-1.7306 > ui mousemode right ""translate selected models"" > view matrix models > #3,0.0064753,-0.19016,-0.98173,56.296,-0.62971,0.76187,-0.15172,-26.049,0.77681,0.61919,-0.11481,-1.7255 > ui mousemode right ""rotate selected models"" > view matrix models > #3,0.006079,-0.19053,-0.98166,56.297,-0.60675,0.77962,-0.15507,-26.101,0.79487,0.59656,-0.11086,-1.763 > view matrix models > #3,0.030399,-0.17393,-0.98429,56.242,-0.54737,0.82106,-0.16199,-26.236,0.83634,0.5437,-0.070246,-1.85 > view matrix models > #3,-0.68101,-0.327,-0.65521,57.811,-0.61466,0.7416,0.26875,-26.097,0.39802,0.58575,-0.70603,-0.86368 > ui mousemode right ""translate selected models"" > view matrix models > #3,-0.68101,-0.327,-0.65521,52.377,-0.61466,0.7416,0.26875,-23.297,0.39802,0.58575,-0.70603,-0.86927 > ui mousemode right ""translate selected models"" > view matrix models > #3,-0.68101,-0.327,-0.65521,52.984,-0.61466,0.7416,0.26875,-23.59,0.39802,0.58575,-0.70603,-0.86868 > select subtract #3 Nothing selected > select add #4 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #4,0.51422,-0.51473,-0.68602,61.864,0.78963,0.59633,0.14445,-13.941,0.33474,-0.61599,0.7131,-0.63191 > ui mousemode right ""rotate selected models"" > view matrix models > #4,-0.92272,0.33983,-0.18195,64.911,0.23545,0.8706,0.43201,-12.763,0.30521,0.35578,-0.88333,-0.60948 > ui mousemode right ""translate selected models"" > view matrix models > #4,-0.92272,0.33983,-0.18195,63.104,0.23545,0.8706,0.43201,-13.423,0.30521,0.35578,-0.88333,-0.60816 > ui mousemode right ""rotate selected models"" > view matrix models > #4,0.11936,0.36202,-0.9245,60.838,0.29984,0.87453,0.38117,-13.563,0.94649,-0.3227,-0.0041668,-1.9803 > ui mousemode right ""translate selected models"" > view matrix models > #4,0.11936,0.36202,-0.9245,65.088,0.29984,0.87453,0.38117,-13.813,0.94649,-0.3227,-0.0041668,-1.9798 > view matrix models > #4,0.11936,0.36202,-0.9245,65.359,0.29984,0.87453,0.38117,-13.705,0.94649,-0.3227,-0.0041668,-1.98 > select subtract #4 Nothing selected > ui mousemode right ""rotate selected models"" > select add #3 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #3,-0.56508,0.10287,-0.8186,52.687,-0.50705,0.7394,0.44293,-23.833,0.65084,0.66536,-0.36566,-1.4481 > ui mousemode right ""translate selected models"" > view matrix models > #3,-0.56508,0.10287,-0.8186,52.366,-0.50705,0.7394,0.44293,-23.862,0.65084,0.66536,-0.36566,-1.3709 > select subtract #3 Nothing selected > select add #4 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #4,0.11936,0.36202,-0.9245,62.015,0.29984,0.87453,0.38117,-9.0078,0.94649,-0.3227,-0.0041668,-2.6782 > ui mousemode right ""rotate selected models"" > view matrix models > #4,0.17492,0.46516,-0.86777,61.879,-0.091408,0.88523,0.45609,-8.1509,0.98033,-0.00045966,0.19736,-2.7969 > ui mousemode right ""translate selected models"" > view matrix models > #4,0.17492,0.46516,-0.86777,69.2,-0.091408,0.88523,0.45609,-19.171,0.98033,-0.00045966,0.19736,-1.0473 > view matrix models > #4,0.17492,0.46516,-0.86777,69.415,-0.091408,0.88523,0.45609,-19.033,0.98033,-0.00045966,0.19736,-1.1347 > view matrix models > #4,0.17492,0.46516,-0.86777,59.659,-0.091408,0.88523,0.45609,-12.332,0.98033,-0.00045966,0.19736,-1.0673 > ui mousemode right ""translate selected models"" > view matrix models > #4,0.17492,0.46516,-0.86777,61.851,-0.091408,0.88523,0.45609,-17.834,0.98033,-0.00045966,0.19736,-0.070533 > ui dockable false ""Model Panel"" > ui dockable true ""Model Panel"" > log metadata #3 The model has no metadata > log chains #3 Chain information for 4F_2 #3 --- Chain | Description A | No description available > view #3 clip false > view matrix models > #4,0.17492,0.46516,-0.86777,63.338,-0.091408,0.88523,0.45609,-18.919,0.98033,-0.00045966,0.19736,-0.14304 > view matrix models > #4,0.17492,0.46516,-0.86777,62.522,-0.091408,0.88523,0.45609,-16.163,0.98033,-0.00045966,0.19736,-1.4647 > view matrix models > #4,0.17492,0.46516,-0.86777,62.841,-0.091408,0.88523,0.45609,-16.433,0.98033,-0.00045966,0.19736,-1.3203 > select add #1 9526 atoms, 10269 bonds, 13 pseudobonds, 313 residues, 3 models selected > view matrix models > #1,1,0,0,-0.13753,0,1,0,0.58576,0,0,1,-0.27865,#4,0.17492,0.46516,-0.86777,62.704,-0.091408,0.88523,0.45609,-15.847,0.98033,-0.00045966,0.19736,-1.5989 > select subtract #4 9359 atoms, 10096 bonds, 13 pseudobonds, 294 residues, 2 models selected > view matrix models #1,1,0,0,1.6542,0,1,0,-0.61072,0,0,1,0.3864 > select subtract #1 Nothing selected > select add #4 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #4,0.17492,0.46516,-0.86777,63.693,-0.091408,0.88523,0.45609,-13.946,0.98033,-0.00045966,0.19736,-1.7825 > view matrix models > #4,0.17492,0.46516,-0.86777,64.481,-0.091408,0.88523,0.45609,-12.762,0.98033,-0.00045966,0.19736,-1.9073 > ui mousemode right ""translate selected models"" > ui mousemode right ""rotate selected models"" > view matrix models > #4,0.11466,0.49993,-0.85844,64.609,-0.19818,0.85828,0.47336,-12.524,0.97344,0.11585,0.19749,-1.9051 > select add #3 334 atoms, 346 bonds, 38 residues, 2 models selected > select subtract #4 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #3,-0.45056,0.12149,-0.88444,52.115,-0.77743,0.43362,0.45561,-23.234,0.43887,0.89287,-0.10092,-0.9406 > ui mousemode right ""translate selected models"" > view matrix models > #3,-0.45056,0.12149,-0.88444,56.177,-0.77743,0.43362,0.45561,-26.555,0.43887,0.89287,-0.10092,-0.18338 > select subtract #3 Nothing selected > select add #4 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #4,0.11466,0.49993,-0.85844,68.79,-0.19818,0.85828,0.47336,-15.677,0.97344,0.11585,0.19749,-1.14 > select add #2 334 atoms, 346 bonds, 38 residues, 2 models selected > select subtract #4 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #2,0.91857,0.052357,-0.39177,14.432,-0.12881,0.97673,-0.17149,-67.442,0.37367,0.20799,0.90394,1.3857 > view matrix models > #2,0.91857,0.052357,-0.39177,13.871,-0.12881,0.97673,-0.17149,-68.156,0.37367,0.20799,0.90394,0.83384 > view matrix models > #2,0.91857,0.052357,-0.39177,17.438,-0.12881,0.97673,-0.17149,-66.54,0.37367,0.20799,0.90394,1.1975 > view matrix models > #2,0.91857,0.052357,-0.39177,25.428,-0.12881,0.97673,-0.17149,-61.815,0.37367,0.20799,0.90394,-0.1469 > select subtract #2 Nothing selected > build start peptide 4F_4 DWFKAFYDKVAEKFKEAFG -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 rotLib Dunbrack Chain information for 4F_4 #5 --- Chain | Description A | No description available > select add #5 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models #5,1,0,0,-26.751,0,1,0,-33.308,0,0,1,7.4837 > ui mousemode right ""rotate selected models"" > view matrix models > #5,0.39314,-0.32988,-0.85827,-4.0889,0.047859,0.9395,-0.33918,-37.619,0.91823,0.092269,0.38515,-38.674 > ui mousemode right ""translate selected models"" > view matrix models > #5,0.39314,-0.32988,-0.85827,-17.304,0.047859,0.9395,-0.33918,-43.007,0.91823,0.092269,0.38515,-36.864 > ui mousemode right ""rotate selected models"" > view matrix models > #5,0.55511,-0.25801,-0.79075,-23.899,-0.077086,0.93063,-0.35776,-36.724,0.8282,0.25955,0.49671,-27.876 > ui mousemode right ""translate selected models"" > view matrix models > #5,0.55511,-0.25801,-0.79075,-21.318,-0.077086,0.93063,-0.35776,-37.089,0.8282,0.25955,0.49671,-27.988 > ui mousemode right ""rotate selected models"" > view matrix models > #5,0.35639,-0.34978,-0.8664,-13.31,-0.11946,0.90261,-0.41354,-35.627,0.92667,0.25088,0.27989,-33.535 > ui mousemode right ""translate selected models"" > view matrix models > #5,0.35639,-0.34978,-0.8664,-16.148,-0.11946,0.90261,-0.41354,-37.383,0.92667,0.25088,0.27989,-33.044 > view matrix models > #5,0.35639,-0.34978,-0.8664,-16.081,-0.11946,0.90261,-0.41354,-35.657,0.92667,0.25088,0.27989,-32.695 > select add #2 334 atoms, 346 bonds, 38 residues, 2 models selected > select subtract #5 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #2,0.91857,0.052357,-0.39177,23.182,-0.12881,0.97673,-0.17149,-56.897,0.37367,0.20799,0.90394,1.3126 > view matrix models > #2,0.91857,0.052357,-0.39177,22.576,-0.12881,0.97673,-0.17149,-52.637,0.37367,0.20799,0.90394,7.3623 > view matrix models > #2,0.91857,0.052357,-0.39177,21.241,-0.12881,0.97673,-0.17149,-53.192,0.37367,0.20799,0.90394,14.741 > open /Users/praneetha/Downloads/lipid.after.pdb > select subtract #2 Nothing selected > select add #6 52025 atoms, 51580 bonds, 445 residues, 1 model selected > show sel surfaces > hide sel surfaces > style sel sphere Changed 52025 atom styles > view matrix models #6,1,0,0,3.8171,0,1,0,4.0501,0,0,1,1.7633 > ui mousemode right ""rotate selected models"" > select subtract #6 1 model selected > select add #1 9359 atoms, 10096 bonds, 13 pseudobonds, 294 residues, 2 models selected > view matrix models > #1,0.99991,0.013417,0.00046783,1.637,-0.013414,0.99989,-0.0058825,-0.60204,-0.00054671,0.0058757,0.99998,0.37917 > undo [Repeated 1 time(s)] > select add #1 9359 atoms, 10096 bonds, 13 pseudobonds, 294 residues, 2 models selected > select add #2 9526 atoms, 10269 bonds, 13 pseudobonds, 313 residues, 3 models selected > select add #3 9693 atoms, 10442 bonds, 13 pseudobonds, 332 residues, 4 models selected > select add #4 9860 atoms, 10615 bonds, 13 pseudobonds, 351 residues, 5 models selected > select add #5 10027 atoms, 10788 bonds, 13 pseudobonds, 370 residues, 6 models selected > select add #6 62052 atoms, 62368 bonds, 13 pseudobonds, 815 residues, 7 models selected > view matrix models > #1,0.9997,0.017471,-0.017007,1.6786,-0.017254,0.99977,0.012805,-0.634,0.017226,-0.012508,0.99977,0.39187,#2,0.9097,0.065868,-0.41002,20.097,-0.13985,0.97826,-0.15312,-53.357,0.39102,0.19663,0.89913,15.738,#3,-0.47147,0.11385,-0.8745,55.741,-0.76385,0.44286,0.46947,-27.52,0.44073,0.88933,-0.12183,1.0859,#4,0.094608,0.5128,-0.85328,68.557,-0.18765,0.85094,0.49059,-16.874,0.97767,0.1137,0.17673,0.21077,#5,0.33844,-0.33817,-0.87812,-16.101,-0.11372,0.91165,-0.39491,-35.79,0.93409,0.23351,0.27008,-32.549,#6,0.9997,0.017471,-0.017007,3.8989,-0.017254,0.99977,0.012805,4.0061,0.017226,-0.012508,0.99977,1.7474 > view matrix models > #1,0.99783,-0.007543,-0.065344,1.8392,0.012317,0.99726,0.072968,-0.81698,0.064615,-0.073614,0.99519,0.44104,#2,0.89314,0.031285,-0.44869,20.842,-0.089878,0.98987,-0.10989,-51.966,0.44071,0.13847,0.88691,19.863,#3,-0.4724,0.059617,-0.87937,56.476,-0.74882,0.49908,0.4361,-26.06,0.46487,0.8645,-0.19112,5.3068,#4,0.052298,0.4848,-0.87306,69.043,-0.1252,0.87054,0.4759,-15.126,0.99075,0.084415,0.10622,4.369,#5,0.29597,-0.37222,-0.87969,-13.431,-0.04713,0.91414,-0.40266,-38.399,0.95404,0.16063,0.25301,-31.048,#6,0.99783,-0.007543,-0.065344,3.8724,0.012317,0.99726,0.072968,3.9582,0.064615,-0.073614,0.99519,1.6079 > view matrix models > #1,0.99696,0.028872,-0.072364,1.8181,-0.023645,0.99712,0.072084,-0.78574,0.074237,-0.070153,0.99477,0.43049,#2,0.88502,0.065347,-0.46094,18.789,-0.12322,0.98767,-0.096574,-52.644,0.44894,0.14227,0.88216,19.853,#3,-0.50339,0.069033,-0.8613,55.467,-0.7329,0.49386,0.46793,-27.985,0.45766,0.8668,-0.19801,5.7313,#4,0.038147,0.5148,-0.85646,68.425,-0.13015,0.85234,0.50653,-17.506,0.99076,0.092147,0.099517,4.953,#5,0.2848,-0.34081,-0.89596,-14.481,-0.060749,0.92637,-0.37169,-37.696,0.95666,0.16028,0.24312,-31.336,#6,0.99696,0.028872,-0.072364,4.0094,-0.023645,0.99712,0.072084,3.9098,0.074237,-0.070153,0.99477,1.6338 > ui mousemode right ""rotate selected models"" > view matrix models > #1,0.88524,-0.18649,0.42611,1.3034,0.46507,0.36914,-0.80464,1.1181,-0.0072388,0.91047,0.41351,-1.2708,#2,0.99641,-0.047172,0.070348,34.565,0.078984,0.21754,-0.97285,-20.733,0.030587,0.97491,0.22049,-43.351,#3,-0.06687,0.40714,-0.91091,54.164,-0.84965,-0.50187,-0.16194,17.356,-0.52309,0.76313,0.37949,-25.522,#4,0.55325,0.33186,-0.76406,62.894,-0.8031,0.45611,-0.38341,28.008,0.22126,0.82573,0.51886,-16.105,#5,0.73263,-0.37106,-0.57059,-21.957,-0.62399,-0.031353,-0.78081,6.5518,0.27184,0.92808,-0.25451,-46.731,#6,0.88524,-0.18649,0.42611,2.9356,0.46507,0.36914,-0.80464,2.7367,-0.0072388,0.91047,0.41351,3.5265 > view matrix models > #1,0.77999,-0.52316,-0.3434,3.5728,0.52583,0.84542,-0.093604,-1.4415,0.33929,-0.10756,0.93451,-0.13545,#2,0.65555,-0.54157,-0.52627,41.429,0.33914,0.83381,-0.4356,-36.939,0.67471,0.10708,0.73027,25.58,#3,-0.09542,-0.4387,-0.89356,59.868,-0.93525,0.3469,-0.070441,5.348,0.34088,0.82898,-0.44339,20.621,#4,-0.14116,-0.098862,-0.98504,64.344,-0.19837,0.97765,-0.069692,21.266,0.96991,0.18557,-0.15762,22.837,#5,0.022261,-0.83119,-0.55555,19.434,-0.00033703,0.55568,-0.8314,-37.3,0.99975,0.018695,0.01209,-33.298,#6,0.77999,-0.52316,-0.3434,2.3487,0.52583,0.84542,-0.093604,3.5074,0.33929,-0.10756,0.93451,1.3838 > view matrix models > #1,0.82784,-0.33495,-0.44998,3.5621,0.36018,0.93235,-0.031388,-1.4848,0.43005,-0.13609,0.89249,-0.12856,#2,0.63544,-0.37741,-0.67363,30.93,0.19903,0.92299,-0.32937,-43.905,0.74606,0.075223,0.66161,28.262,#3,-0.31007,-0.44644,-0.83938,57.644,-0.9009,0.42002,0.1094,-6.0179,0.30372,0.79011,-0.53243,26.341,#4,-0.27673,0.074243,-0.95808,64.873,-0.17403,0.97665,0.12595,8.6972,0.94506,0.20159,-0.25734,29.432,#5,-0.081935,-0.70479,-0.70467,15.505,-0.012105,0.7077,-0.70641,-39.51,0.99656,-0.049349,-0.066517,-32.511,#6,0.82784,-0.33495,-0.44998,3.1719,0.36018,0.93235,-0.031388,3.5966,0.43005,-0.13609,0.89249,1.3962 > view matrix models > #1,0.70955,-0.30391,-0.63575,3.9064,0.50879,0.84516,0.16383,-1.83,0.48752,-0.43971,0.75431,0.23535,#2,0.45336,-0.39192,-0.80054,24.659,0.41972,0.8862,-0.19617,-33.952,0.78632,-0.24707,0.56626,43.733,#3,-0.36243,-0.61322,-0.70186,50.839,-0.81439,0.57457,-0.081472,3.8906,0.45323,0.54206,-0.70764,37.794,#4,-0.47728,0.020224,-0.87852,57.092,0.050327,0.99872,-0.0043498,19.345,0.87731,-0.046289,-0.47769,38.439,#5,-0.29995,-0.682,-0.66701,23.005,0.23218,0.62599,-0.74447,-45.893,0.92527,-0.37817,-0.029416,-17.954,#6,0.70955,-0.30391,-0.63575,3.1493,0.50879,0.84516,0.16383,3.4352,0.48752,-0.43971,0.75431,0.27896 > view matrix models > #1,0.85338,-0.37422,-0.36292,3.8441,0.51023,0.74227,0.4344,-1.7521,0.10682,-0.55588,0.82437,0.63257,#2,0.69648,-0.39631,-0.5982,35.027,0.5354,0.84206,0.065491,-24.552,0.47777,-0.36589,0.79866,43.787,#3,-0.25284,-0.38262,-0.88863,60.288,-0.6163,0.77172,-0.15693,6.5622,0.74582,0.50799,-0.43093,20.408,#4,-0.18127,0.063396,-0.98139,67.328,0.33426,0.94248,-0.00085694,20.657,0.92488,-0.3282,-0.19203,14.921,#5,0.012536,-0.72732,-0.68619,13.83,0.49571,0.60049,-0.62743,-51.186,0.8684,-0.33229,0.36807,-9.0519,#6,0.85338,-0.37422,-0.36292,3.446,0.51023,0.74227,0.4344,3.4092,0.10682,-0.55588,0.82437,-0.59222 > view matrix models > #1,0.84329,-0.36428,-0.39517,3.8668,0.51592,0.75473,0.40523,-1.7456,0.15063,-0.5456,0.8244,0.59113,#2,0.67389,-0.39384,-0.62511,33.866,0.52811,0.84846,0.034756,-25.508,0.51669,-0.35355,0.77976,44.064,#3,-0.27017,-0.40834,-0.87193,59.521,-0.64136,0.75176,-0.15333,6.5719,0.7181,0.5178,-0.465,22.489,#4,-0.21578,0.063145,-0.9744,66.573,0.30405,0.95264,-0.0055973,20.902,0.9279,-0.29747,-0.22476,17.665,#5,-0.02213,-0.72291,-0.69058,14.75,0.46922,0.60244,-0.64568,-50.752,0.88281,-0.33832,0.32587,-10.232,#6,0.84329,-0.36428,-0.39517,3.4488,0.51592,0.75473,0.40523,3.4459,0.15063,-0.5456,0.8244,-0.49095 > view matrix models > #1,0.95768,-0.23842,-0.16126,3.2829,0.25715,0.9604,0.10723,-1.2266,0.12931,-0.14416,0.98107,0.094055,#2,0.85016,-0.21627,-0.48007,32.262,0.15257,0.97382,-0.16851,-45.15,0.50394,0.070019,0.86089,24.29,#3,-0.31691,-0.13101,-0.93936,61.775,-0.81545,0.54344,0.19931,-12.184,0.48437,0.82916,-0.27905,10.325,#4,8.3703e-05,0.25546,-0.96682,71.416,-0.056467,0.96528,0.25505,1.4041,0.9984,0.054572,0.014506,9.4495,#5,0.22036,-0.59063,-0.77627,-0.011565,0.076278,0.80383,-0.58995,-42.993,0.97243,0.070787,0.22218,-29.602,#6,0.95768,-0.23842,-0.16126,4.021,0.25715,0.9604,0.10723,3.9535,0.12931,-0.14416,0.98107,1.0526 > view matrix models > #1,0.93973,-0.20209,-0.27581,3.538,0.27025,0.93315,0.23705,-1.517,0.20947,-0.2973,0.93152,0.2494,#2,0.78618,-0.20555,-0.58281,28.611,0.21662,0.97489,-0.051622,-41.888,0.57879,-0.085665,0.81096,33.356,#3,-0.38734,-0.21972,-0.89537,60.174,-0.74319,0.64912,0.16221,-11.127,0.54556,0.72826,-0.41472,18.852,#4,-0.12069,0.26439,-0.95683,70.093,0.076806,0.96348,0.25654,2.2055,0.98971,-0.042529,-0.13659,17.37,#5,0.10346,-0.5803,-0.8078,3.0784,0.2045,0.80722,-0.55369,-46.855,0.97338,-0.10791,0.20219,-23.863,#6,0.93973,-0.20209,-0.27581,4.2489,0.27025,0.93315,0.23705,3.7432,0.20947,-0.2973,0.93152,0.59939 > view matrix models > #1,0.94019,-0.22974,-0.25153,3.5063,0.28407,0.93627,0.20664,-1.4725,0.18803,-0.26573,0.94553,0.22303,#2,0.79923,-0.22749,-0.5563,30.391,0.21755,0.97234,-0.085061,-42.173,0.56026,-0.053041,0.82661,31.451,#3,-0.35539,-0.20998,-0.91083,60.871,-0.76519,0.625,0.15448,-10.393,0.53683,0.75185,-0.38279,16.83,#4,-0.091518,0.2437,-0.96552,70.472,0.04817,0.96954,0.24015,3.1774,0.99464,-0.024532,-0.10047,15.407,#5,0.12943,-0.59933,-0.78997,3.2047,0.18087,0.79757,-0.57547,-46.159,0.97495,-0.068401,0.21163,-25.079,#6,0.94019,-0.22974,-0.25153,4.1227,0.28407,0.93627,0.20664,3.7903,0.18803,-0.26573,0.94553,0.69306 > view matrix models > #1,0.87711,-0.17907,-0.44566,3.8028,0.37755,0.8306,0.40934,-1.7733,0.29687,-0.52729,0.79614,0.49459,#2,0.66223,-0.22167,-0.71576,24.001,0.39278,0.91618,0.079665,-32.177,0.63811,-0.33389,0.69379,45.463,#3,-0.45156,-0.369,-0.81236,56.525,-0.6362,0.77152,0.0031947,-2.9704,0.62558,0.51827,-0.58314,29.907,#4,-0.29776,0.23317,-0.92573,66.066,0.27714,0.94906,0.14991,10.435,0.91353,-0.21192,-0.34722,27.154,#5,-0.078993,-0.58023,-0.81061,9.2658,0.41465,0.72035,-0.55603,-51.12,0.90655,-0.38004,0.18369,-12.628,#6,0.87711,-0.17907,-0.44566,4.2517,0.37755,0.8306,0.40934,3.4782,0.29687,-0.52729,0.79614,-0.22478 > view matrix models > #1,0.94925,-0.29516,-0.10864,3.2458,0.30221,0.95165,0.055074,-1.1929,0.087136,-0.085112,0.99255,0.06719,#2,0.86938,-0.26118,-0.41948,35.799,0.17559,0.95678,-0.23181,-44.522,0.46189,0.12787,0.87767,20.497,#3,-0.24591,-0.10966,-0.96307,62.721,-0.85183,0.49855,0.16074,-9.4367,0.46251,0.8599,-0.21601,6.4606,#4,0.061577,0.20864,-0.97605,71.587,-0.10034,0.97425,0.20193,4.6742,0.99305,0.0855,0.080925,5.6844,#5,0.27289,-0.6257,-0.73078,0.34895,0.04505,0.76708,-0.63996,-41.726,0.96099,0.14172,0.23751,-31.331,#6,0.94925,-0.29516,-0.10864,3.7737,0.30221,0.95165,0.055074,3.9721,0.087136,-0.085112,0.99255,1.2256 > view matrix models > #1,0.95798,-0.28247,-0.049857,3.0729,0.28634,0.95198,0.10837,-1.3182,0.016851,-0.11809,0.99286,0.15921,#2,0.89773,-0.23611,-0.37193,35.974,0.1809,0.96736,-0.17747,-44.211,0.40169,0.092042,0.91114,20.951,#3,-0.23391,-0.050612,-0.97094,62.661,-0.82155,0.54435,0.16954,-10.466,0.51995,0.83733,-0.16891,3.5761,#4,0.11729,0.2307,-0.96593,71.719,-0.050339,0.97277,0.22623,3.3975,0.99182,0.02209,0.12571,1.5543,#5,0.32896,-0.60255,-0.72713,-2.3681,0.088746,0.7863,-0.61144,-43.345,0.94017,0.13661,0.31213,-28.846,#6,0.95798,-0.28247,-0.049857,3.7598,0.28634,0.95198,0.10837,3.8874,0.016851,-0.11809,0.99286,1.0123 > view matrix models > #1,0.96985,-0.23954,-0.044904,3.0108,0.24284,0.96542,0.094798,-1.2686,0.020644,-0.10284,0.99448,0.13771,#2,0.90495,-0.19253,-0.37946,33.958,0.13413,0.97539,-0.175,-45.915,0.40382,0.10747,0.9085,20.225,#3,-0.27045,-0.026133,-0.96238,62.129,-0.81836,0.53277,0.21551,-13.129,0.5071,0.84585,-0.16548,3.3648,#4,0.11496,0.27406,-0.95482,71.8,-0.071205,0.96099,0.26725,0.34474,0.99081,0.037263,0.12999,1.5551,#5,0.33265,-0.56671,-0.75378,-4.3091,0.059058,0.81025,-0.5831,-42.546,0.9412,0.14945,0.303,-29.523,#6,0.96985,-0.23954,-0.044904,3.9302,0.24284,0.96542,0.094798,3.8869,0.020644,-0.10284,0.99448,1.0723 > view matrix models > #1,0.97206,-0.234,-0.018385,2.9398,0.23451,0.9649,0.11823,-1.3188,-0.0099261,-0.11924,0.99282,0.17898,#2,0.91618,-0.18148,-0.35731,34.02,0.1353,0.97931,-0.15047,-45.764,0.37723,0.089512,0.92179,20.506,#3,-0.26412,0.00021884,-0.96449,62.02,-0.80391,0.55246,0.22027,-13.633,0.53289,0.83354,-0.14574,2.1656,#4,0.13993,0.28299,-0.94886,71.754,-0.049245,0.95909,0.27878,-0.29254,0.98894,0.0077157,0.14814,-0.20639,#5,0.35735,-0.55583,-0.75057,-5.4909,0.077866,0.81857,-0.56911,-43.205,0.93072,0.14493,0.33579,-28.31,#6,0.97206,-0.234,-0.018385,3.9264,0.23451,0.9649,0.11823,3.8485,-0.0099261,-0.11924,0.99282,0.96873 > select subtract #6 10027 atoms, 10788 bonds, 13 pseudobonds, 370 residues, 7 models selected > hide #!6 models > select subtract #1 668 atoms, 692 bonds, 76 residues, 4 models selected > select subtract #2 501 atoms, 519 bonds, 57 residues, 3 models selected > select subtract #3 334 atoms, 346 bonds, 38 residues, 2 models selected > select subtract #4 167 atoms, 173 bonds, 19 residues, 1 model selected > select subtract #5 Nothing selected > select add #3 167 atoms, 173 bonds, 19 residues, 1 model selected > ui mousemode right ""rotate selected models"" > view matrix models > #3,0.19739,0.33989,-0.91952,60.965,-0.91438,0.40205,-0.047667,-13.362,0.35349,0.85019,0.39015,2.5365 > ui mousemode right ""translate selected models"" > view matrix models > #3,0.19739,0.33989,-0.91952,60.009,-0.91438,0.40205,-0.047667,-12.779,0.35349,0.85019,0.39015,10.683 > select subtract #3 Nothing selected > select add #4 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #4,0.13993,0.28299,-0.94886,72.757,-0.049245,0.95909,0.27878,1.9329,0.98894,0.0077157,0.14814,-1.2959 > view matrix models > #4,0.13993,0.28299,-0.94886,70.193,-0.049245,0.95909,0.27878,1.817,0.98894,0.0077157,0.14814,15.579 > select subtract #4 Nothing selected > build start peptide 4F_5 DWFKAFYDKVAEKFKEAFG -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 rotLib Dunbrack Chain information for 4F_5 #7 --- Chain | Description A | No description available > select add #7 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models #7,1,0,0,-36.55,0,1,0,33.297,0,0,1,-0.30559 > ui mousemode right ""rotate selected models"" > view matrix models > #7,0.39011,0.66832,-0.63337,11.624,-0.83823,0.54243,0.056068,65.795,0.38103,0.50904,0.77182,-7.7028 > ui mousemode right ""translate selected models"" > view matrix models > #7,0.39011,0.66832,-0.63337,14.858,-0.83823,0.54243,0.056068,62.476,0.38103,0.50904,0.77182,-1.8862 > ui mousemode right ""rotate selected models"" > view matrix models > #7,0.8774,-0.16268,-0.45134,-31.157,-0.24374,0.65915,-0.71142,33.927,0.41323,0.7342,0.53869,1.9074 > ui mousemode right ""translate selected models"" > view matrix models > #7,0.8774,-0.16268,-0.45134,-32.54,-0.24374,0.65915,-0.71142,35.131,0.41323,0.7342,0.53869,2.7691 > view matrix models > #7,0.8774,-0.16268,-0.45134,-31.522,-0.24374,0.65915,-0.71142,34.256,0.41323,0.7342,0.53869,1.9631 > build start peptide 4F_6 DWFKAFYDKVAEKFKEAFG -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 rotLib Dunbrack Chain information for 4F_6 #8 --- Chain | Description A | No description available > select subtract #7 Nothing selected > select add #8 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models #8,1,0,0,-39.575,0,1,0,35.666,0,0,1,5.6932 > ui mousemode right ""rotate selected models"" > view matrix models > #8,0.84144,-0.34769,-0.41363,-40.127,0.040722,0.80411,-0.59309,28.384,0.53881,0.4822,0.69077,-10.635 > view matrix models > #8,0.57623,-0.80799,0.12292,-37.452,0.71543,0.42597,-0.55381,-16.279,0.39511,0.40706,0.82352,-4.9271 > view matrix models > #8,0.60408,-0.78485,0.13821,-38.325,0.67836,0.41539,-0.60604,-14.628,0.41824,0.45985,0.78334,-4.8426 > view matrix models > #8,0.3558,-0.89467,0.27012,-28.012,0.79713,0.13965,-0.58744,-27.686,0.48784,0.42433,0.76286,-9.3749 > ui mousemode right ""translate selected models"" > view matrix models > #8,0.3558,-0.89467,0.27012,-32.032,0.79713,0.13965,-0.58744,-24.368,0.48784,0.42433,0.76286,-4.0537 > view matrix models > #8,0.3558,-0.89467,0.27012,-11.984,0.79713,0.13965,-0.58744,2.9692,0.48784,0.42433,0.76286,-32.244 > select add #7 334 atoms, 346 bonds, 38 residues, 2 models selected > select subtract #8 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #7,0.8774,-0.16268,-0.45134,-13.312,-0.24374,0.65915,-0.71142,58.66,0.41323,0.7342,0.53869,-23.423 > view matrix models > #7,0.8774,-0.16268,-0.45134,13.02,-0.24374,0.65915,-0.71142,58.38,0.41323,0.7342,0.53869,-17.829 > select add #8 334 atoms, 346 bonds, 38 residues, 2 models selected > select subtract #7 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #8,0.3558,-0.89467,0.27012,11.868,0.79713,0.13965,-0.58744,5.8151,0.48784,0.42433,0.76286,-28.511 > select subtract #8 Nothing selected > build start peptide 4F_7 DWFKAFYDKVAEKFKEAFG -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 rotLib Dunbrack Chain information for 4F_7 #9 --- Chain | Description A | No description available > build start peptide 4F_8 DWFKAFYDKVAEKFKEAFG -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 rotLib Dunbrack Chain information for 4F_8 #10 --- Chain | Description A | No description available > select add #10 167 atoms, 173 bonds, 19 residues, 1 model selected > select subtract #10 Nothing selected > color #2 #ef0300ff > color #2 #ff2600ff > color #3 #ff2600ff > color #4 #ff2600ff > color #5 #ff2600ff > color #6 #ff2600ff > color #7 #ff2600ff > color #8 #ff2600ff > color #9 #ff2600ff > select add #9 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models #9,1,0,0,-43.372,0,1,0,75.109,0,0,1,-41.356 > ui mousemode right ""rotate selected models"" > view matrix models > #9,0.71406,-0.48363,-0.50618,-40.663,0.15651,0.815,-0.55792,62.071,0.68237,0.31917,0.65765,-69.275 > ui mousemode right ""translate selected models"" > view matrix models > #9,0.71406,-0.48363,-0.50618,-40.555,0.15651,0.815,-0.55792,63.62,0.68237,0.31917,0.65765,-69.919 > select subtract #9 Nothing selected > select add #10 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models #10,1,0,0,-60.483,0,1,0,74.393,0,0,1,-44.605 > ui mousemode right ""move picked models"" > ui mousemode right ""rotate selected models"" > view matrix models > #10,-0.55847,-0.13193,0.81896,18.114,-0.57072,0.77757,-0.26393,98.588,-0.60199,-0.61479,-0.50955,-29.103 > ui mousemode right ""translate selected models"" > view matrix models > #10,-0.55847,-0.13193,0.81896,26.945,-0.57072,0.77757,-0.26393,100.06,-0.60199,-0.61479,-0.50955,-27.903 > color #10 #ff2600ff > select subtract #10 Nothing selected > build start peptide 4F_9 DWFKAFYDKVAEKFKEAFG -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 rotLib Dunbrack Chain information for 4F_9 #11 --- Chain | Description A | No description available > color #11 #ff2600ff > select add #11 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models #11,1,0,0,-97.867,0,1,0,65.93,0,0,1,-25.318 > ui mousemode right ""rotate selected models"" > view matrix models > #11,0.93738,-0.22591,-0.26511,-100.33,0.040271,0.82633,-0.56175,59.248,0.34597,0.5159,0.78368,-30.706 > view matrix models > #11,0.90304,-0.29112,-0.31585,-100.17,0.047381,0.79833,-0.60036,58.164,0.42693,0.52718,0.73472,-34.682 > ui mousemode right ""translate selected models"" > view matrix models > #11,0.90304,-0.29112,-0.31585,-101.16,0.047381,0.79833,-0.60036,51.272,0.42693,0.52718,0.73472,-33.093 > view matrix models > #11,0.90304,-0.29112,-0.31585,-108.98,0.047381,0.79833,-0.60036,52.319,0.42693,0.52718,0.73472,-32.129 > ui mousemode right ""move picked models"" > select add #1 9526 atoms, 10269 bonds, 13 pseudobonds, 313 residues, 3 models selected > select add #2 9693 atoms, 10442 bonds, 13 pseudobonds, 332 residues, 4 models selected > select add #3 9860 atoms, 10615 bonds, 13 pseudobonds, 351 residues, 5 models selected > select add #4 10027 atoms, 10788 bonds, 13 pseudobonds, 370 residues, 6 models selected > select add #10 10194 atoms, 10961 bonds, 13 pseudobonds, 389 residues, 7 models selected > select add #9 10361 atoms, 11134 bonds, 13 pseudobonds, 408 residues, 8 models selected > select add #8 10528 atoms, 11307 bonds, 13 pseudobonds, 427 residues, 9 models selected > select add #5 10695 atoms, 11480 bonds, 13 pseudobonds, 446 residues, 10 models selected > select add #6 62720 atoms, 63060 bonds, 13 pseudobonds, 891 residues, 11 models selected > select add #7 62887 atoms, 63233 bonds, 13 pseudobonds, 910 residues, 13 models selected > select subtract #7 62720 atoms, 63060 bonds, 13 pseudobonds, 891 residues, 12 models selected > view matrix models > #1,0.97206,-0.234,-0.018385,4.7687,0.23451,0.9649,0.11823,-1.9572,-0.0099261,-0.11924,0.99282,-0.049262 > undo [Repeated 2 time(s)] > select add #7 62887 atoms, 63233 bonds, 13 pseudobonds, 910 residues, 13 models selected > select subtract #1 53528 atoms, 53137 bonds, 616 residues, 11 models selected > select subtract #2 53361 atoms, 52964 bonds, 597 residues, 10 models selected > select subtract #3 53194 atoms, 52791 bonds, 578 residues, 9 models selected > select subtract #4 53027 atoms, 52618 bonds, 559 residues, 8 models selected > select subtract #11 52860 atoms, 52445 bonds, 540 residues, 7 models selected > select subtract #10 52693 atoms, 52272 bonds, 521 residues, 6 models selected > select subtract #9 52526 atoms, 52099 bonds, 502 residues, 5 models selected > select subtract #8 52359 atoms, 51926 bonds, 483 residues, 4 models selected > select subtract #5 52192 atoms, 51753 bonds, 464 residues, 3 models selected > select subtract #6 167 atoms, 173 bonds, 19 residues, 2 models selected > select subtract #7 Nothing selected > build start peptide 4F_10 DWFKAFYDKVAEKFKEAFG -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 rotLib Dunbrack Chain information for 4F_10 #12 --- Chain | Description A | No description available > select add #12 167 atoms, 173 bonds, 19 residues, 1 model selected > ui mousemode right ""translate selected models"" > view matrix models #12,1,0,0,-63.718,0,1,0,27.581,0,0,1,-5.4875 > ui mousemode right ""rotate selected models"" > view matrix models > #12,0.9281,-0.10995,-0.35574,-61.179,0.022245,0.97007,-0.24179,29.176,0.37168,0.21649,0.90277,-5.5093 > ui mousemode right ""translate selected models"" > view matrix models > #12,0.9281,-0.10995,-0.35574,-55.63,0.022245,0.97007,-0.24179,30.214,0.37168,0.21649,0.90277,-5.6737 > color #12 #ff2600ff > select subtract #12 Nothing selected > build start peptide 4F_11 DWFKAFYDKVAEKFKEAFG -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 rotLib Dunbrack Chain information for 4F_11 #13 --- Chain | Description A | No description available > select add #13 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models #13,1,0,0,-57.869,0,1,0,-29.923,0,0,1,5.6733 > ui mousemode right ""rotate selected models"" > view matrix models > #13,0.8785,-0.1415,-0.4563,-56.006,0.0098675,0.9603,-0.27879,-27.999,0.47763,0.24042,0.84502,11.151 > ui mousemode right ""translate selected models"" > view matrix models > #13,0.8785,-0.1415,-0.4563,-43.03,0.0098675,0.9603,-0.27879,-21.217,0.47763,0.24042,0.84502,9.8657 > view matrix models > #13,0.8785,-0.1415,-0.4563,-43.571,0.0098675,0.9603,-0.27879,-21.647,0.47763,0.24042,0.84502,9.9451 > color #13 #ff2600ff > select subtract #13 Nothing selected > build start peptide 4F_12 DWFKAFYDKVAEKFKEAFG -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 rotLib Dunbrack Chain information for 4F_12 #14 --- Chain | Description A | No description available > select add #14 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models #14,1,0,0,-50.301,0,1,0,-32.958,0,0,1,6.1462 > ui mousemode right ""rotate selected models"" > view matrix models > #14,0.90245,-0.12134,-0.41334,-48.496,0.022057,0.97127,-0.23697,-31.18,0.43022,0.20474,0.8792,11.046 > ui mousemode right ""translate selected models"" > view matrix models > #14,0.90245,-0.12134,-0.41334,-42.052,0.022057,0.97127,-0.23697,-29.061,0.43022,0.20474,0.8792,10.626 > select subtract #14 Nothing selected > color #14 #ff2600ff > build start peptide 4F_13 DWFKAFYDKVAEKFKEAFG -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 rotLib Dunbrack Chain information for 4F_13 #15 --- Chain | Description A | No description available > color #15 #ff2600ff > select add #15 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models #15,1,0,0,-10.178,0,1,0,-55.933,0,0,1,3.3203 > view matrix models #15,1,0,0,-10.163,0,1,0,-56.214,0,0,1,3.2228 > view matrix models #15,1,0,0,-20.822,0,1,0,-75.075,0,0,1,-8.4133 > view matrix models #15,1,0,0,-15.431,0,1,0,-62.99,0,0,1,-11.975 > view matrix models #15,1,0,0,-3.6312,0,1,0,-53.708,0,0,1,6.3113 > view matrix models #15,1,0,0,-10.495,0,1,0,-55.671,0,0,1,12.456 > select subtract #15 Nothing selected > build start peptide 4F_14 DWFKAFYDKVAEKFKEAFG -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 > -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 -57.0,-47.0 rotLib Dunbrack Chain information for 4F_14 #16 --- Chain | Description A | No description available > color #16 #ff2600ff > select add #16 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models #16,1,0,0,4.3773,0,1,0,-58.381,0,0,1,-4.2786 > select subtract #16 Nothing selected > ui mousemode right select Drag select of 12 residues > select add #11 167 atoms, 173 bonds, 19 residues, 1 model selected > select subtract #11 Nothing selected > select add #11 167 atoms, 173 bonds, 19 residues, 1 model selected Drag select of 3 residues > select add #11 167 atoms, 173 bonds, 19 residues, 1 model selected > ui mousemode right ""translate selected models"" > view matrix models > #11,0.90304,-0.29112,-0.31585,-100.89,0.047381,0.79833,-0.60036,60.667,0.42693,0.52718,0.73472,-7.3315 > select add #12 334 atoms, 346 bonds, 38 residues, 2 models selected > select subtract #11 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #12,0.9281,-0.10995,-0.35574,-47.31,0.022245,0.97007,-0.24179,44.018,0.37168,0.21649,0.90277,-9.6476 > ui mousemode right ""rotate selected models"" > view matrix models > #12,0.89086,-0.38409,-0.24259,-47.095,0.28381,0.88753,-0.36297,45.117,0.35472,0.25451,0.89967,-9.7612 > view matrix models > #12,0.9121,-0.30025,-0.27915,-47.146,0.20227,0.92184,-0.3306,44.779,0.35659,0.24508,0.90154,-9.7405 > view matrix models > #12,0.92099,-0.29715,-0.25194,-47.321,0.19895,0.91475,-0.35163,44.931,0.33495,0.27372,0.9016,-9.8434 > view matrix models > #12,0.93093,-0.24411,-0.27164,-47.376,0.147,0.93133,-0.33318,44.747,0.33432,0.27024,0.90289,-9.8398 > view matrix models > #12,0.93106,-0.25687,-0.25913,-47.41,0.16,0.9257,-0.34275,44.828,0.32792,0.27766,0.90298,-9.8672 > view matrix models > #12,0.92751,-0.25556,-0.27278,-47.331,0.15811,0.9295,-0.3332,44.756,0.3387,0.26592,0.90253,-9.8218 > ui mousemode right ""move picked models"" > view matrix models > #12,0.91835,-0.26574,-0.29328,-47.173,0.16765,0.93249,-0.31994,44.667,0.3585,0.24465,0.9009,-9.7346 > view matrix models > #12,0.95948,0.15411,-0.23591,-48.926,-0.12319,0.98236,0.1407,41.58,0.25343,-0.10593,0.96153,-8.9595 > view matrix models > #12,0.95877,0.16238,-0.23321,-48.971,-0.13152,0.98104,0.14235,41.572,0.2519,-0.10581,0.96195,-8.9629 > view matrix models > #12,0.19868,-0.86431,0.46206,-50.019,0.047532,-0.4624,-0.88539,52.804,0.97891,0.19788,-0.05079,-3.539 > view matrix models > #12,0.056394,-0.91387,0.40207,-49.524,0.13041,-0.39251,-0.91045,52.747,0.98985,0.10378,0.097046,-4.1296 > view matrix models > #12,0.056394,-0.91387,0.40207,-57.877,0.13041,-0.39251,-0.91045,39.168,0.98985,0.10378,0.097046,-5.6798 > view matrix models > #12,0.18117,-0.94417,0.27517,-56.958,0.31528,-0.20927,-0.92564,38.698,0.93154,0.25445,0.25977,-7.205 > view matrix models > #1,0.97206,-0.234,-0.018385,1.3481,0.23451,0.9649,0.11823,-3.3636,-0.0099261,-0.11924,0.99282,-0.30746 > undo > view matrix models > #12,0.2036,-0.93827,0.27962,-56.998,0.2989,-0.2124,-0.93035,38.733,0.93231,0.273,0.2372,-7.1283 > view matrix models > #12,0.2036,-0.93827,0.27962,-55.562,0.2989,-0.2124,-0.93035,40.407,0.93231,0.273,0.2372,-6.3801 > view matrix models > #12,0.2036,-0.93827,0.27962,-54.601,0.2989,-0.2124,-0.93035,35.793,0.93231,0.273,0.2372,5.4324 > view matrix models > #11,0.90304,-0.29112,-0.31585,-100.67,0.047381,0.79833,-0.60036,60.748,0.42693,0.52718,0.73472,-7.0385 > view matrix models > #11,0.90304,-0.29112,-0.31585,-103.19,0.047381,0.79833,-0.60036,56.385,0.42693,0.52718,0.73472,-3.2187 > select subtract #12 Nothing selected > select add #10 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #10,-0.55847,-0.13193,0.81896,15.961,-0.57072,0.77757,-0.26393,101.86,-0.60199,-0.61479,-0.50955,-37.217 > view matrix models > #10,-0.4484,-0.1421,0.88247,9.9835,0.80219,0.3715,0.46742,20.35,-0.39426,0.91749,-0.052588,-9.8348 > view matrix models > #10,-0.52195,-0.25459,0.8141,11.005,0.71739,-0.64733,0.25751,-0.6,0.46143,0.71844,0.52051,-59.242 > undo [Repeated 1 time(s)] > view matrix models > #10,-0.50247,-0.10448,0.85826,13.733,-0.45224,0.87781,-0.1579,98.206,-0.73689,-0.46748,-0.48832,-26.498 > view matrix models > #10,-0.50247,-0.10448,0.85826,24.528,-0.45224,0.87781,-0.1579,102.76,-0.73689,-0.46748,-0.48832,24.086 > select add #9 334 atoms, 346 bonds, 38 residues, 2 models selected > select subtract #10 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #9,0.71406,-0.48363,-0.50618,-41.388,0.15651,0.815,-0.55792,66.331,0.68237,0.31917,0.65765,-29.588 > view matrix models > #9,0.71994,-0.49711,-0.48432,-42.02,0.094879,0.76177,-0.64086,68.193,0.68752,0.41542,0.59559,-27.498 > view matrix models > #9,0.72205,-0.42577,-0.5453,-40.389,0.01198,0.79577,-0.60548,73.388,0.69173,0.43065,0.57969,-27.348 > view matrix models > #9,0.94809,0.26464,-0.17635,-34.898,-0.31731,0.82424,-0.46898,91.376,0.02125,0.50059,0.86543,9.5787 > select add #10 334 atoms, 346 bonds, 38 residues, 2 models selected > select subtract #9 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #10,0.075445,-0.044596,0.99615,-4.1359,-0.41306,0.90786,0.071927,101.57,-0.90757,-0.4169,0.050073,34.52 > view matrix models > #10,0.075445,-0.044596,0.99615,-16.597,-0.41306,0.90786,0.071927,105.8,-0.90757,-0.4169,0.050073,30.779 > view matrix models > #9,0.94809,0.26464,-0.17635,-34.988,-0.31731,0.82424,-0.46898,91.809,0.02125,0.50059,0.86543,9.4118 > view matrix models > #9,0.94809,0.26464,-0.17635,-34.189,-0.31731,0.82424,-0.46898,101.5,0.02125,0.50059,0.86543,6.1904 > view matrix models > #1,0.96164,-0.27274,-0.029225,2.9964,0.27428,0.95479,0.11464,-1.3315,-0.0033632,-0.11826,0.99298,0.17348 > ui mousemode right pivot > ui mousemode right ""move picked models"" > view matrix models > #10,0.15311,-0.15959,0.97524,-23.522,-0.39004,0.89699,0.20802,104.39,-0.90798,-0.41223,0.075095,30.928 > ui mousemode right ""rotate selected models"" > view matrix models > #10,0.055764,-0.078629,0.99534,-16.413,-0.36731,0.92537,0.09368,103.85,-0.92842,-0.37083,0.022721,33 > ui mousemode right ""translate selected atoms"" > ui mousemode right ""move picked models"" > select subtract #10 Nothing selected > view matrix models > #1,0.7769,0.62026,0.10821,1.9653,-0.52768,0.54766,0.64932,-0.2798,0.34349,-0.56156,0.75278,0.51789 > undo [Repeated 5 time(s)] > view matrix models > #1,0.96164,-0.27274,-0.029225,7.7869,0.27428,0.95479,0.11464,-2.249,-0.0033632,-0.11826,0.99298,8.7317 > ui mousemode right select Drag select of 9 residues > select add #7 245 atoms, 173 bonds, 27 residues, 2 models selected > select add #8 334 atoms, 346 bonds, 38 residues, 2 models selected > ui mousemode right translate > ui mousemode right ""translate selected models"" > view matrix models > #7,0.8774,-0.16268,-0.45134,14.06,-0.24374,0.65915,-0.71142,58.983,0.41323,0.7342,0.53869,-1.9123,#8,0.3558,-0.89467,0.27012,12.907,0.79713,0.13965,-0.58744,6.4185,0.48784,0.42433,0.76286,-12.594 > view matrix models > #7,0.8774,-0.16268,-0.45134,6.9362,-0.24374,0.65915,-0.71142,64.104,0.41323,0.7342,0.53869,9.1014,#8,0.3558,-0.89467,0.27012,5.7838,0.79713,0.13965,-0.58744,11.54,0.48784,0.42433,0.76286,-1.5807 > select subtract #7 167 atoms, 173 bonds, 19 residues, 1 model selected > select add #9 334 atoms, 346 bonds, 38 residues, 2 models selected > select subtract #8 167 atoms, 173 bonds, 19 residues, 1 model selected > select subtract #9 Nothing selected > show #!6 models > hide #!6 models > select add #7 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #7,0.8774,-0.16268,-0.45134,2.4579,-0.24374,0.65915,-0.71142,67.069,0.41323,0.7342,0.53869,7.3673 > select subtract #7 Nothing selected > ui mousemode right ""move picked models"" > select add #15 167 atoms, 173 bonds, 19 residues, 1 model selected > select subtract #15 Nothing selected > select add #16 167 atoms, 173 bonds, 19 residues, 1 model selected > ui mousemode right ""rotate selected models"" > ui mousemode right ""translate selected models"" > view matrix models #16,1,0,0,0.16978,0,1,0,-56.796,0,0,1,1.3538 > view matrix models #16,1,0,0,2.3845,0,1,0,-57.417,0,0,1,0.6561 > ui mousemode right ""rotate selected models"" > view matrix models > #16,0.99983,-0.018383,0.0028479,2.4775,0.018422,0.99973,-0.014142,-57.103,-0.0025872,0.014192,0.9999,0.53806 > view matrix models > #16,0.99967,-0.017322,-0.018748,2.5899,0.015886,0.99712,-0.074223,-56.783,0.019979,0.073901,0.99707,0.4795 > view matrix models > #16,0.9534,0.027902,-0.30042,3.3035,-0.18796,0.83382,-0.51906,-55.898,0.23601,0.55134,0.80021,1.437 > ui mousemode right ""translate selected models"" > view matrix models > #16,0.9534,0.027902,-0.30042,4.8461,-0.18796,0.83382,-0.51906,-52.961,0.23601,0.55134,0.80021,12.638 > select add #15 334 atoms, 346 bonds, 38 residues, 2 models selected > select subtract #16 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models #15,1,0,0,1.5804,0,1,0,-60.064,0,0,1,8.7775 > ui mousemode right ""rotate selected models"" > view matrix models > #15,-0.70392,0.64484,0.2978,-25.615,-0.043831,-0.45791,0.88792,-56.772,0.70893,0.61197,0.35059,17.709 > view matrix models > #15,-0.52026,-0.69068,0.5023,-16.354,0.82117,-0.56612,0.072094,-40.576,0.23456,0.44998,0.86169,9.809 > ui mousemode right ""translate selected models"" > view matrix models > #15,-0.52026,-0.69068,0.5023,-30.385,0.82117,-0.56612,0.072094,-37.755,0.23456,0.44998,0.86169,7.2192 > select subtract #15 Nothing selected > color #6 black > color #6 #bbbbbbff > color #6 #bababaff > show #!6 models > ui mousemode right ""rotate selected models"" > ui mousemode right ""move picked models"" > view matrix models > #6,0.97206,-0.234,-0.018385,-2.7158,0.23451,0.9649,0.11823,-0.70406,-0.0099261,-0.11924,0.99282,0.5202 > undo > ui mousemode right ""translate selected models"" > ui mousemode right ""rotate selected models"" [Repeated 2 time(s)] > hide #2 models > show #2 models > select add #2 167 atoms, 173 bonds, 19 residues, 1 model selected > ui mousemode right ""translate selected models"" > view matrix models > #2,0.91618,-0.18148,-0.35731,42.428,0.1353,0.97931,-0.15047,-51.343,0.37723,0.089512,0.92179,22.133 > ui mousemode right ""rotate selected models"" > view matrix models > #2,0.93497,-0.16402,-0.31453,42.383,0.098551,0.97188,-0.21387,-51.259,0.34077,0.16896,0.92484,22.204 > select subtract #2 Nothing selected > select add #3 167 atoms, 173 bonds, 19 residues, 1 model selected > select subtract #3 Nothing selected > select add #3 167 atoms, 173 bonds, 19 residues, 1 model selected > select subtract #3 Nothing selected > select add #2 167 atoms, 173 bonds, 19 residues, 1 model selected > select subtract #2 Nothing selected > select add #5 167 atoms, 173 bonds, 19 residues, 1 model selected > ui mousemode right ""translate selected models"" > view matrix models > #5,0.35735,-0.55583,-0.75057,-3.1154,0.077866,0.81857,-0.56911,-43.992,0.93072,0.14493,0.33579,-28.06 > ui mousemode right ""rotate selected models"" > view matrix models > #5,0.58468,-0.43539,-0.68453,-11.907,0.01464,0.84931,-0.52769,-39.885,0.81113,0.29851,0.50295,-17.824 > ui mousemode right ""translate selected models"" > view matrix models > #5,0.58468,-0.43539,-0.68453,-8.7379,0.01464,0.84931,-0.52769,-41.667,0.81113,0.29851,0.50295,-17.296 > ui mousemode right ""rotate selected models"" > select subtract #5 Nothing selected > ui mousemode right ""move picked models"" > ui mousemode right select Drag select of 482 residues, 7 pseudobonds, 525 shapes, 50161 atoms Drag select of 560 residues, 7 pseudobonds, 588 shapes, 52025 atoms > select add #1 63722 atoms, 10096 bonds, 13 pseudobonds, 1005 residues, 18 models selected > select add #2 63722 atoms, 10269 bonds, 13 pseudobonds, 1005 residues, 18 models selected > select add #3 63722 atoms, 10442 bonds, 13 pseudobonds, 1005 residues, 18 models selected > select add #4 63722 atoms, 10615 bonds, 13 pseudobonds, 1005 residues, 18 models selected > select add #5 63722 atoms, 10788 bonds, 13 pseudobonds, 1005 residues, 18 models selected > select add #6 63722 atoms, 62368 bonds, 13 pseudobonds, 1005 residues, 18 models selected > select add #7 63722 atoms, 62541 bonds, 13 pseudobonds, 1005 residues, 18 models selected > select add #8 63722 atoms, 62714 bonds, 13 pseudobonds, 1005 residues, 18 models selected > select add #9 63722 atoms, 62887 bonds, 13 pseudobonds, 1005 residues, 18 models selected > select add #10 63722 atoms, 63060 bonds, 13 pseudobonds, 1005 residues, 18 models selected > select add #11 63722 atoms, 63233 bonds, 13 pseudobonds, 1005 residues, 18 models selected > rename #3 id #2 > rename #4 id #2 > rename #5 id #2 > rename #7 id #2 > rename #8 id #2 > rename #9 id #2 > rename #10 id #2 > rename #11 id #2 > rename #12 id #2 > rename #13 id #2 > rename #14 id #2 > rename #15 id #2 > rename #16 id #2 > rename #6 id #3 > select add #2 63722 atoms, 64098 bonds, 13 pseudobonds, 1005 residues, 18 models selected > ui mousemode right ""move picked models"" > view matrix models > #3,0.97206,-0.234,-0.018385,-45.519,0.23451,0.9649,0.11823,11.589,-0.0099261,-0.11924,0.99282,41.412 > undo > ui mousemode right ""translate selected models"" > view matrix models > #1,0.96164,-0.27274,-0.029225,-45.722,0.27428,0.95479,0.11464,11.058,-0.0033632,-0.11826,0.99298,48.94,#2,0.93497,-0.16402,-0.31453,-6.3348,0.098551,0.97188,-0.21387,-38.869,0.34077,0.16896,0.92484,70.97,#3,0.97206,-0.234,-0.018385,-44.792,0.23451,0.9649,0.11823,16.238,-0.0099261,-0.11924,0.99282,49.735 > undo [Repeated 9 time(s)] > view matrix models > #1,0.96164,-0.27274,-0.029225,-31.694,0.27428,0.95479,0.11464,31.664,-0.0033632,-0.11826,0.99298,10.043,#2,0.93497,-0.16402,-0.31453,7.6929,0.098551,0.97188,-0.21387,-18.264,0.34077,0.16896,0.92484,32.074,#3,0.97206,-0.234,-0.018385,-30.764,0.23451,0.9649,0.11823,36.844,-0.0099261,-0.11924,0.99282,10.839 > select add #2 63722 atoms, 12518 bonds, 13 pseudobonds, 1005 residues, 18 models selected > select add #3 63722 atoms, 64098 bonds, 13 pseudobonds, 1005 residues, 18 models selected > select subtract #3 11697 atoms, 12518 bonds, 13 pseudobonds, 560 residues, 17 models selected > hide #!3 models > select subtract #1 2338 atoms, 2422 bonds, 266 residues, 14 models selected > view matrix models > #2,0.93497,-0.16402,-0.31453,-29.746,0.098551,0.97188,-0.21387,23.573,0.34077,0.16896,0.92484,43.76 > ui mousemode right select Drag select of 19 residues > select add #2 2338 atoms, 2422 bonds, 266 residues, 14 models selected > select subtract #2 Nothing selected > select add #2 2338 atoms, 2422 bonds, 266 residues, 14 models selected > select subtract #2 Nothing selected > select add #2 2338 atoms, 2422 bonds, 266 residues, 14 models selected > select subtract #2 Nothing selected > select add #2.1 167 atoms, 173 bonds, 19 residues, 1 model selected > select subtract #2.1 Nothing selected Drag select of 19 residues > select add #2.13 334 atoms, 173 bonds, 38 residues, 2 models selected > select subtract #2.13 167 atoms, 19 residues, 1 model selected > select add #2.12 334 atoms, 173 bonds, 38 residues, 2 models selected > select subtract #2.12 167 atoms, 19 residues, 1 model selected > select add #2.11 334 atoms, 173 bonds, 38 residues, 2 models selected > select subtract #2.11 167 atoms, 19 residues, 1 model selected > select add #2.10 334 atoms, 173 bonds, 38 residues, 2 models selected > select subtract #2.10 167 atoms, 19 residues, 1 model selected > select add #2.9 334 atoms, 173 bonds, 38 residues, 2 models selected > select subtract #2.9 167 atoms, 19 residues, 1 model selected > select add #2.8 334 atoms, 173 bonds, 38 residues, 2 models selected > select subtract #2.8 167 atoms, 19 residues, 1 model selected > select add #2.7 334 atoms, 173 bonds, 38 residues, 2 models selected > select subtract #2.7 167 atoms, 19 residues, 1 model selected > select add #2.6 334 atoms, 173 bonds, 38 residues, 2 models selected > select subtract #2.6 167 atoms, 19 residues, 1 model selected > select add #2.5 334 atoms, 173 bonds, 38 residues, 2 models selected > select subtract #2.5 167 atoms, 19 residues, 1 model selected > select add #2.4 334 atoms, 173 bonds, 38 residues, 2 models selected > select subtract #2.4 167 atoms, 19 residues, 1 model selected > select add #2.3 334 atoms, 173 bonds, 38 residues, 2 models selected Drag select of 2 residues > ui mousemode right ""translate selected models"" > select add #2.3 199 atoms, 173 bonds, 20 residues, 2 models selected > view matrix models > #1,0.96164,-0.27274,-0.029225,-36.532,0.27428,0.95479,0.11464,27.171,-0.0033632,-0.11826,0.99298,9.3498,#2.3,0.58468,-0.43539,-0.68453,-13.941,0.01464,0.84931,-0.52769,-45.358,0.81113,0.29851,0.50295,-15.455 > undo > select add #1 9526 atoms, 10269 bonds, 13 pseudobonds, 313 residues, 3 models selected > select subtract #1 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #2.3,0.58468,-0.43539,-0.68453,23.146,0.01464,0.84931,-0.52769,7.8149,0.81113,0.29851,0.50295,-25.243 > select add #2.2 334 atoms, 346 bonds, 38 residues, 2 models selected > select subtract #2.3 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #2.2,0.13993,0.28299,-0.94886,65.177,-0.049245,0.95909,0.27878,-13.571,0.98894,0.0077157,0.14814,15.885 > select subtract #2.2 Nothing selected > select add #2.1 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #2.1,0.19739,0.33989,-0.91952,43.043,-0.91438,0.40205,-0.047667,-48.749,0.35349,0.85019,0.39015,13.715 > select subtract #2.1 Nothing selected > select add #2 2338 atoms, 2422 bonds, 266 residues, 14 models selected > select subtract #2 Nothing selected > ui mousemode right select Drag select of 19 residues > ui mousemode right ""translate selected models"" > view matrix models > #2,0.93497,-0.16402,-0.31453,-27.951,0.098551,0.97188,-0.21387,23.685,0.34077,0.16896,0.92484,43.423 > view matrix models > #2,0.93497,-0.16402,-0.31453,-25.399,0.098551,0.97188,-0.21387,22.563,0.34077,0.16896,0.92484,42.674 > rename #2 id #4 > rename #4.1 id #2 > rename #4.2 id #4 > rename #3.1 id #5 > select add #5 52192 atoms, 464 residues, 2 models selected > select add #5 52192 atoms, 464 residues, 2 models selected > select subtract #5 167 atoms, 19 residues, 1 model selected > select add #5 52192 atoms, 464 residues, 2 models selected > select add #5 52192 atoms, 464 residues, 2 models selected > undo [Repeated 9 time(s)] > rename #5 id #3 > select add #4 2171 atoms, 2249 bonds, 247 residues, 13 models selected > select subtract #4 Nothing selected > select add #4 2171 atoms, 2249 bonds, 247 residues, 13 models selected > select subtract #4 Nothing selected > select add #2 167 atoms, 173 bonds, 19 residues, 1 model selected > select subtract #2 Nothing selected > rename #4.13 id #16 > rename #4.12 id #15 > rename #4.11 id #14 > rename #4.10 id #13 > rename #4.9 id #12 > rename #4.8 id #11 > rename #4.7 id #10 > rename #4.6 id #9 > rename #4.5 id #8 > rename #4.4 id #7 > rename #4.3 id #6 > rename #4.2 id #5 > rename #2 id #17 > rename #3 id #2 > rename #17 id #3 > select add #3 167 atoms, 173 bonds, 19 residues, 1 model selected > ui mousemode right translate > ui mousemode right ""translate selected models"" > view matrix models > #3,0.19739,0.33989,-0.91952,8.4618,-0.91438,0.40205,-0.047667,-60.471,0.35349,0.85019,0.39015,31.585 > view matrix models > #3,0.19739,0.33989,-0.91952,-5.3249,-0.91438,0.40205,-0.047667,-29.583,0.35349,0.85019,0.39015,38.633 > view matrix models > #3,0.19739,0.33989,-0.91952,-4.4954,-0.91438,0.40205,-0.047667,-28.441,0.35349,0.85019,0.39015,33.36 > view matrix models > #3,0.19739,0.33989,-0.91952,0.043674,-0.91438,0.40205,-0.047667,-26.239,0.35349,0.85019,0.39015,31.617 > view matrix models > #3,0.19739,0.33989,-0.91952,6.277,-0.91438,0.40205,-0.047667,-54.337,0.35349,0.85019,0.39015,24.126 > view matrix models > #3,0.19739,0.33989,-0.91952,6.5552,-0.91438,0.40205,-0.047667,-55.143,0.35349,0.85019,0.39015,31.261 > view matrix models > #3,0.19739,0.33989,-0.91952,3.608,-0.91438,0.40205,-0.047667,-41.174,0.35349,0.85019,0.39015,44.661 > show #!2 models > hide #!2 models > ui mousemode right translate [Repeated 1 time(s)] > show #!2 models > color #1 #b8b8b8ff > color #1 #1e7ec4ff > color #1 #1d81c4ff > ui mousemode right ""rotate selected models"" > ui mousemode right ""translate selected models"" > view matrix models > #3,0.19739,0.33989,-0.91952,1.9367,-0.91438,0.40205,-0.047667,-43.498,0.35349,0.85019,0.39015,42.405 > ui mousemode right rotate > ui mousemode right translate > select add #1 9526 atoms, 10269 bonds, 13 pseudobonds, 313 residues, 3 models selected > ui mousemode right ""translate selected models"" > view matrix models > #1,0.96164,-0.27274,-0.029225,-31.101,0.27428,0.95479,0.11464,36.195,-0.0033632,-0.11826,0.99298,9.7164,#3,0.19739,0.33989,-0.91952,2.5295,-0.91438,0.40205,-0.047667,-38.967,0.35349,0.85019,0.39015,42.078 > view > view orient > ui tool show ""Side View"" > view matrix models > #1,0.96164,-0.27274,-0.029225,-31.246,0.27428,0.95479,0.11464,35.506,-0.0033632,-0.11826,0.99298,9.7375,#3,0.19739,0.33989,-0.91952,2.3843,-0.91438,0.40205,-0.047667,-39.657,0.35349,0.85019,0.39015,42.099 > undo > select subtract #1 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #3,0.19739,0.33989,-0.91952,-1.3314,-0.91438,0.40205,-0.047667,-23.786,0.35349,0.85019,0.39015,41.97 > select subtract #3 Nothing selected > select add #4 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #4,0.93497,-0.16402,-0.31453,9.809,0.098551,0.97188,-0.21387,-13.309,0.34077,0.16896,0.92484,42.489 > select subtract #4 Nothing selected > select add #5 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #5,0.13993,0.28299,-0.94886,32.959,-0.049245,0.95909,0.27878,36.769,0.98894,0.0077157,0.14814,16.515 > ui mousemode right ""rotate selected models"" > view matrix models > #5,0.42052,0.35408,-0.83534,32.329,-0.37329,0.90669,0.1964,37.491,0.82694,0.22923,0.51345,16.831 > ui mousemode right ""translate selected models"" > view matrix models > #5,0.42052,0.35408,-0.83534,37.336,-0.37329,0.90669,0.1964,33.599,0.82694,0.22923,0.51345,16.655 > view matrix models > #5,0.42052,0.35408,-0.83534,37.218,-0.37329,0.90669,0.1964,33.125,0.82694,0.22923,0.51345,16.67 > ui mousemode right ""rotate selected models"" > view matrix models > #5,0.41818,0.35512,-0.83607,37.223,-0.4018,0.89779,0.18037,33.19,0.81467,0.26051,0.51813,16.694 > view matrix models > #5,0.41866,0.35479,-0.83597,37.222,-0.3951,0.9,0.18409,33.174,0.81769,0.25322,0.51698,16.688 > ui mousemode right ""translate selected models"" > view matrix models > #5,0.41866,0.35479,-0.83597,36.689,-0.3951,0.9,0.18409,32.642,0.81769,0.25322,0.51698,16.726 > select subtract #5 Nothing selected > select add #6 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #6,0.58468,-0.43539,-0.68453,-2.3981,0.01464,0.84931,-0.52769,54.347,0.81113,0.29851,0.50295,-24.877 > ui mousemode right ""rotate selected models"" > view matrix models > #6,0.78583,-0.32553,-0.52584,-10.007,0.045573,0.87843,-0.47569,53.507,0.61676,0.34985,0.70513,-13.268 > select subtract #6 Nothing selected > select add #7 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #7,0.75093,-0.42327,-0.5069,2.5772,0.19899,0.87694,-0.43746,49.456,0.62969,0.22763,0.74275,-16.425 > ui mousemode right ""translate selected models"" > view matrix models > #7,0.75093,-0.42327,-0.5069,-28.495,0.19899,0.87694,-0.43746,96.115,0.62969,0.22763,0.74275,-15.78 > ui mousemode right ""rotate selected models"" > view matrix models > #7,0.79376,-0.39905,-0.45902,-30.111,0.14314,0.85605,-0.49668,98.488,0.59114,0.32854,0.73662,-11.264 > ui mousemode right ""translate selected models"" > view matrix models > #7,0.79376,-0.39905,-0.45902,-28.534,0.14314,0.85605,-0.49668,97.802,0.59114,0.32854,0.73662,-11.33 > select subtract #7 Nothing selected > select add #8 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #8,0.3558,-0.89467,0.27012,-24.42,0.79713,0.13965,-0.58744,50.403,0.48784,0.42433,0.76286,-0.82429 > ui mousemode right ""rotate selected models"" > view matrix models > #8,0.37551,-0.87771,0.29769,-25.015,0.78878,0.134,-0.5999,50.693,0.48664,0.46008,0.74263,0.11785 > select subtract #8 Nothing selected > select add #9 167 atoms, 173 bonds, 19 residues, 1 model selected > select add #2 52192 atoms, 51753 bonds, 464 residues, 2 models selected > select subtract #2 167 atoms, 173 bonds, 19 residues, 2 models selected > hide #!2 models > view matrix models > #9,0.76518,0.10395,-0.63537,-28.831,-0.34061,0.90282,-0.26249,104.77,0.54634,0.41727,0.72622,-23.398 > ui mousemode right ""translate selected models"" > view matrix models > #9,0.76518,0.10395,-0.63537,-75.225,-0.34061,0.90282,-0.26249,170.62,0.54634,0.41727,0.72622,-22.359 > select subtract #9 Nothing selected > select add #10 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #10,0.055764,-0.078629,0.99534,-63.934,-0.36731,0.92537,0.09368,167.88,-0.92842,-0.37083,0.022721,34.132 > select subtract #10 Nothing selected > select add #11 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #11,0.90304,-0.29112,-0.31585,-164.38,0.047381,0.79833,-0.60036,101.86,0.42693,0.52718,0.73472,-1.0212 > select subtract #11 Nothing selected > select add #12 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #12,0.2036,-0.93827,0.27962,-151.6,0.2989,-0.2124,-0.93035,53.22,0.93231,0.273,0.2372,10.01 > select subtract #12 Nothing selected > select add #13 167 atoms, 173 bonds, 19 residues, 1 model selected > select subtract #13 Nothing selected > select add #14 167 atoms, 173 bonds, 19 residues, 1 model selected > select subtract #14 Nothing selected > select add #13 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #13,0.8785,-0.1415,-0.4563,-75.52,0.0098675,0.9603,-0.27879,-55.907,0.47763,0.24042,0.84502,12.253 > view matrix models > #13,0.8785,-0.1415,-0.4563,-85.083,0.0098675,0.9603,-0.27879,-56.035,0.47763,0.24042,0.84502,12.741 > select subtract #13 Nothing selected > select add #14 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #14,0.90245,-0.12134,-0.41334,-63.15,0.022057,0.97127,-0.23697,-56.779,0.43022,0.20474,0.8792,12.252 > select subtract #14 Nothing selected > select add #2 52025 atoms, 51580 bonds, 445 residues, 1 model selected > select subtract #2 1 model selected > show #!2 models > select add #3 167 atoms, 173 bonds, 19 residues, 1 model selected > select subtract #3 Nothing selected > select add #4 167 atoms, 173 bonds, 19 residues, 1 model selected > select subtract #4 Nothing selected > select add #5 167 atoms, 173 bonds, 19 residues, 1 model selected > select subtract #5 Nothing selected > select add #6 167 atoms, 173 bonds, 19 residues, 1 model selected > select subtract #6 Nothing selected > select add #7 167 atoms, 173 bonds, 19 residues, 1 model selected > select subtract #7 Nothing selected > select add #8 167 atoms, 173 bonds, 19 residues, 1 model selected > select subtract #8 Nothing selected > select add #9 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #9,0.76518,0.10395,-0.63537,-74.156,-0.34061,0.90282,-0.26249,146.44,0.54634,0.41727,0.72622,-21.929 > ui mousemode right ""rotate selected models"" > view matrix models > #9,0.74862,0.093445,-0.65638,-73.561,-0.39863,0.85452,-0.333,148.24,0.52978,0.51094,0.67696,-18.762 > ui mousemode right ""translate selected models"" > view matrix models > #9,0.74862,0.093445,-0.65638,-73.769,-0.39863,0.85452,-0.333,145.42,0.52978,0.51094,0.67696,-18.695 > select subtract #9 Nothing selected > select add #10 167 atoms, 173 bonds, 19 residues, 1 model selected > ui mousemode right ""rotate selected models"" > view matrix models > #10,-0.53709,-0.33364,0.77474,-39.37,-0.49663,0.86747,0.029279,173.17,-0.68183,-0.36903,-0.6316,20.973 > ui mousemode right ""translate selected models"" > view matrix models > #10,-0.53709,-0.33364,0.77474,-23.378,-0.49663,0.86747,0.029279,151.26,-0.68183,-0.36903,-0.6316,20.6 > select subtract #10 Nothing selected > select add #11 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #11,0.90304,-0.29112,-0.31585,-143.34,0.047381,0.79833,-0.60036,89.151,0.42693,0.52718,0.73472,-1.835 > ui mousemode right ""rotate selected models"" > view matrix models > #11,0.82786,-0.36918,-0.42232,-141.4,0.083474,0.82558,-0.55807,87.96,0.55469,0.42675,0.71428,-11.017 > ui mousemode right ""translate selected models"" > view matrix models > #11,0.82786,-0.36918,-0.42232,-142.91,0.083474,0.82558,-0.55807,90.279,0.55469,0.42675,0.71428,-10.987 > select add #12 334 atoms, 346 bonds, 38 residues, 2 models selected > select subtract #11 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #12,0.2036,-0.93827,0.27962,-94.519,0.2989,-0.2124,-0.93035,71.772,0.93231,0.273,0.2372,6.7397 > ui mousemode right ""rotate selected models"" > view matrix models > #12,0.47022,-0.78813,0.39717,-95.67,0.57,-0.07237,-0.81845,70.691,0.67379,0.61124,0.41521,4.4318 > ui mousemode right ""translate selected models"" > view matrix models > #12,0.47022,-0.78813,0.39717,-93.187,0.57,-0.07237,-0.81845,73.796,0.67379,0.61124,0.41521,4.2436 > select subtract #12 Nothing selected > select add #13 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #13,0.8785,-0.1415,-0.4563,-82.289,0.0098675,0.9603,-0.27879,12.235,0.47763,0.24042,0.84502,11.233 > select subtract #13 Nothing selected > select add #14 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #14,0.90245,-0.12134,-0.41334,-80.788,0.022057,0.97127,-0.23697,4.5419,0.43022,0.20474,0.8792,11.921 > select subtract #14 Nothing selected > select add #13 167 atoms, 173 bonds, 19 residues, 1 model selected > ui mousemode right ""rotate selected models"" > view matrix models > #13,0.77205,-0.19254,-0.60569,-82.497,-0.023229,0.94382,-0.32963,12.199,0.63514,0.26856,0.72421,13.738 > select subtract #13 Nothing selected > select add #14 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #14,0.82987,-0.15334,-0.53647,-80.828,-0.0080484,0.9581,-0.2863,4.515,0.5579,0.24191,0.79387,13.795 > select subtract #14 Nothing selected > select add #15 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #15,-0.44505,-0.43451,0.78303,-32.547,0.78012,-0.61746,0.10076,-38.126,0.43971,0.6557,0.61377,9.9661 > ui mousemode right ""translate selected models"" > view matrix models > #15,-0.44505,-0.43451,0.78303,-68.124,0.78012,-0.61746,0.10076,-13.762,0.43971,0.6557,0.61377,11.285 > select subtract #15 Nothing selected > select add #16 167 atoms, 173 bonds, 19 residues, 1 model selected > ui mousemode right ""rotate selected models"" > view matrix models > #16,0.80541,-0.17332,-0.56681,5.6725,-0.11187,0.89465,-0.43254,-52.846,0.58206,0.41178,0.70117,18.429 > ui mousemode right ""translate selected models"" > view matrix models > #16,0.80541,-0.17332,-0.56681,-37.515,-0.11187,0.89465,-0.43254,-35.35,0.58206,0.41178,0.70117,20.272 > select subtract #16 Nothing selected > ui mousemode right translate > ui mousemode right rotate > select add #3 167 atoms, 173 bonds, 19 residues, 1 model selected > ui mousemode right ""translate selected models"" > view matrix models > #3,0.19739,0.33989,-0.91952,-1.1608,-0.91438,0.40205,-0.047667,-24.907,0.35349,0.85019,0.39015,27.971 > select subtract #3 Nothing selected > select add #4 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #4,0.93497,-0.16402,-0.31453,9.8495,0.098551,0.97188,-0.21387,-14.251,0.34077,0.16896,0.92484,31.628 > ui mousemode right ""rotate selected models"" > view matrix models > #4,0.941,-0.11566,-0.31802,9.8309,0.046934,0.9753,-0.21582,-14.137,0.33513,0.18816,0.92319,31.638 > view matrix models > #4,0.9557,-0.051596,-0.2898,9.7903,-0.036125,0.95652,-0.28943,-13.949,0.29213,0.28708,0.91227,31.723 > view matrix models > #4,0.95407,-0.053971,-0.29467,9.7943,-0.030761,0.96079,-0.27557,-13.962,0.29799,0.27198,0.915,31.711 > ui mousemode right ""translate selected models"" > view matrix models > #4,0.95407,-0.053971,-0.29467,10.324,-0.030761,0.96079,-0.27557,-15.597,0.29799,0.27198,0.915,31.434 > ui mousemode right ""rotate selected models"" > view matrix models > #4,0.9568,-0.031204,-0.28907,10.315,-0.079173,0.92869,-0.36231,-15.483,0.27976,0.36954,0.8861,31.464 > ui mousemode right ""translate selected models"" > view matrix models > #4,0.9568,-0.031204,-0.28907,11.554,-0.079173,0.92869,-0.36231,-17.56,0.27976,0.36954,0.8861,30.61 > view matrix models > #4,0.9568,-0.031204,-0.28907,11.771,-0.079173,0.92869,-0.36231,-17.508,0.27976,0.36954,0.8861,32.858 > ui mousemode right ""rotate selected models"" > view matrix models > #4,0.95541,0.022858,-0.29438,11.768,-0.14024,0.9125,-0.38428,-17.371,0.25984,0.40843,0.87502,32.897 > view matrix models > #4,0.99805,0.026711,-0.056339,11.664,-0.040007,0.9674,-0.25008,-17.603,0.047822,0.25185,0.96658,33.378 > ui mousemode right ""translate selected models"" > view matrix models > #4,0.99805,0.026711,-0.056339,14.566,-0.040007,0.9674,-0.25008,-15.856,0.047822,0.25185,0.96658,31.499 > view matrix models > #4,0.99805,0.026711,-0.056339,14.634,-0.040007,0.9674,-0.25008,-15.631,0.047822,0.25185,0.96658,31.851 > ui mousemode right rotate > select subtract #4 Nothing selected > select add #5 167 atoms, 173 bonds, 19 residues, 1 model selected > ui mousemode right ""translate selected models"" > view matrix models > #5,0.41866,0.35479,-0.83597,36.415,-0.3951,0.9,0.18409,33.654,0.81769,0.25322,0.51698,22.523 > ui mousemode right ""rotate selected models"" > view matrix models > #5,0.41641,0.40042,-0.81625,36.415,-0.41986,0.88102,0.218,33.709,0.80642,0.25193,0.53499,22.548 > view matrix models > #5,0.39583,0.24904,-0.88391,36.479,-0.91405,0.19966,-0.35307,34.897,0.08855,0.94769,0.30667,24.06 > ui mousemode right ""translate selected models"" > view matrix models > #5,0.39583,0.24904,-0.88391,34.563,-0.91405,0.19966,-0.35307,21.192,0.08855,0.94769,0.30667,22.595 > ui mousemode right rotate > select subtract #5 Nothing selected > select add #4 167 atoms, 173 bonds, 19 residues, 1 model selected > ui mousemode right ""rotate selected models"" > view matrix models > #4,0.98491,0.094573,0.14497,14.647,-0.10067,0.99429,0.035278,-15.512,-0.14081,-0.049339,0.98881,32.299 > ui mousemode right ""translate selected models"" > view matrix models > #4,0.98491,0.094573,0.14497,15.568,-0.10067,0.99429,0.035278,-14.377,-0.14081,-0.049339,0.98881,31.645 > ui mousemode right rotate > ui mousemode right ""translate selected models"" > view matrix models > #4,0.98491,0.094573,0.14497,16.887,-0.10067,0.99429,0.035278,-14.287,-0.14081,-0.049339,0.98881,27.893 > view matrix models > #4,0.98491,0.094573,0.14497,16.245,-0.10067,0.99429,0.035278,-14.044,-0.14081,-0.049339,0.98881,28.246 > save /Users/praneetha/PDC.cxs > select subtract #4 Nothing selected > select add #6 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #6,0.78583,-0.32553,-0.52584,-10.846,0.045573,0.87843,-0.47569,53.81,0.61676,0.34985,0.70513,9.5897 > ui mousemode right ""rotate selected models"" > view matrix models > #6,0.74374,-0.27846,-0.60772,-7.5407,0.56691,0.74446,0.35268,23.964,0.35422,-0.60682,0.71154,-0.66808 > ui mousemode right ""translate selected models"" > view matrix models > #6,0.74374,-0.27846,-0.60772,-8.1408,0.56691,0.74446,0.35268,34.056,0.35422,-0.60682,0.71154,-11.814 > ui mousemode right ""rotate selected models"" > view matrix models > #6,0.74974,-0.29915,-0.59025,-8.9576,0.46356,0.87397,0.14588,42.515,0.47222,-0.38299,0.79393,-12.294 > ui mousemode right ""translate selected models"" > view matrix models > #6,0.74974,-0.29915,-0.59025,-8.9025,0.46356,0.87397,0.14588,40.981,0.47222,-0.38299,0.79393,-9.5804 > view matrix models > #6,0.74974,-0.29915,-0.59025,-8.8943,0.46356,0.87397,0.14588,40.549,0.47222,-0.38299,0.79393,-8.6087 > select subtract #6 Nothing selected > select add #7 167 atoms, 173 bonds, 19 residues, 1 model selected > ui mousemode right ""rotate selected models"" > view matrix models > #7,0.98046,0.19395,0.032887,-23.346,-0.042727,0.37315,-0.92679,95.332,-0.19202,0.90727,0.37415,43.808 > ui mousemode right ""translate selected models"" > view matrix models > #7,0.98046,0.19395,0.032887,-17.149,-0.042727,0.37315,-0.92679,90.208,-0.19202,0.90727,0.37415,47.656 > ui mousemode right ""rotate selected models"" > view matrix models > #7,0.99121,0.13208,0.0079461,-19.258,-0.049418,0.42523,-0.90374,91.862,-0.12274,0.8954,0.42802,43.765 > ui mousemode right ""translate selected models"" > view matrix models > #7,0.99121,0.13208,0.0079461,-19.665,-0.049418,0.42523,-0.90374,91.626,-0.12274,0.8954,0.42802,44.318 > ui mousemode right ""translate selected models"" > view matrix models > #7,0.99121,0.13208,0.0079461,-19.862,-0.049418,0.42523,-0.90374,91.725,-0.12274,0.8954,0.42802,43.885 > select subtract #7 Nothing selected > select add #8 167 atoms, 173 bonds, 19 residues, 1 model selected > ui mousemode right ""rotate selected models"" > view matrix models > #8,0.046623,-0.93922,-0.34014,-9.6514,0.9984,0.054672,-0.014112,38.038,0.031851,-0.33894,0.94027,4.1215 > ui mousemode right ""translate selected models"" > view matrix models > #8,0.046623,-0.93922,-0.34014,-17.955,0.9984,0.054672,-0.014112,45.387,0.031851,-0.33894,0.94027,5.0221 > view matrix models > #8,0.046623,-0.93922,-0.34014,-18.426,0.9984,0.054672,-0.014112,44.939,0.031851,-0.33894,0.94027,5.4596 > select subtract #8 Nothing selected > select add #9 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #9,0.74862,0.093445,-0.65638,-73.006,-0.39863,0.85452,-0.333,146.83,0.52978,0.51094,0.67696,2.3019 > ui mousemode right ""rotate selected models"" > view matrix models > #9,0.7343,0.10575,-0.67054,-71.959,-0.391,0.87336,-0.29044,146.92,0.55491,0.47545,0.68266,0.10978 > view matrix models > #9,0.9095,0.40468,0.095063,-73.338,-0.39456,0.91238,-0.10903,148.16,-0.13086,0.061655,0.98948,25.841 > ui mousemode right ""translate selected models"" > view matrix models > #9,0.9095,0.40468,0.095063,-63.615,-0.39456,0.91238,-0.10903,149.88,-0.13086,0.061655,0.98948,20.003 > select subtract #9 Nothing selected > select add #10 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #10,-0.53709,-0.33364,0.77474,-19.812,-0.49663,0.86747,0.029279,153.7,-0.68183,-0.36903,-0.6316,48.665 > ui mousemode right ""rotate selected models"" > view matrix models > #10,-0.60867,-0.23282,0.75849,-13.575,-0.43642,0.89661,-0.075008,151.22,-0.66261,-0.37668,-0.64735,47.463 > view matrix models > #10,0.11294,0.014296,0.9935,-45.061,-0.29966,0.95383,0.020339,145.54,-0.94734,-0.30001,0.11201,64.613 > view matrix models > #10,0.14604,-0.065997,0.98708,-48.787,-0.34431,0.932,0.11325,147.37,-0.92743,-0.35639,0.11338,62.173 > ui mousemode right ""translate selected models"" > view matrix models > #10,0.14604,-0.065997,0.98708,-58.288,-0.34431,0.932,0.11325,144.48,-0.92743,-0.35639,0.11338,57.214 > view matrix models > #10,0.14604,-0.065997,0.98708,-56.901,-0.34431,0.932,0.11325,144.73,-0.92743,-0.35639,0.11338,57.03 > select subtract #10 Nothing selected > select add #9 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #9,0.9095,0.40468,0.095063,-64.077,-0.39456,0.91238,-0.10903,149.06,-0.13086,0.061655,0.98948,20.762 > view matrix models > #9,0.9095,0.40468,0.095063,-63.135,-0.39456,0.91238,-0.10903,149.1,-0.13086,0.061655,0.98948,20.205 > select subtract #9 Nothing selected > select add #10 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #10,0.14604,-0.065997,0.98708,-58.206,-0.34431,0.932,0.11325,144.75,-0.92743,-0.35639,0.11338,58.483 > ui mousemode right ""rotate selected models"" > view matrix models > #10,0.36335,-0.0012556,0.93165,-67.988,-0.3112,0.9424,0.12264,143.29,-0.87814,-0.33449,0.34203,56.557 > ui mousemode right ""translate selected models"" > view matrix models > #10,0.36335,-0.0012556,0.93165,-69.667,-0.3112,0.9424,0.12264,142.81,-0.87814,-0.33449,0.34203,53.224 > select subtract #10 Nothing selected > select add #11 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #11,0.82786,-0.36918,-0.42232,-141.65,0.083474,0.82558,-0.55807,93.681,0.55469,0.42675,0.71428,-1.9999 > ui mousemode right ""rotate selected models"" > view matrix models > #11,0.79786,-0.34595,-0.4937,-139.54,0.053196,0.85616,-0.51396,96.044,0.60049,0.38381,0.7015,-5.4665 > view matrix models > #11,0.97883,-0.20187,-0.033837,-145.21,0.20458,0.95939,0.19421,91.026,-0.0067428,-0.19702,0.98038,12 > ui mousemode right ""translate selected models"" > view matrix models > #11,0.97883,-0.20187,-0.033837,-139.7,0.20458,0.95939,0.19421,97.501,-0.0067428,-0.19702,0.98038,4.0893 > view matrix models > #11,0.97883,-0.20187,-0.033837,-137.72,0.20458,0.95939,0.19421,97.376,-0.0067428,-0.19702,0.98038,6.2068 > view matrix models > #11,0.97883,-0.20187,-0.033837,-138.24,0.20458,0.95939,0.19421,96.451,-0.0067428,-0.19702,0.98038,4.1693 > ui mousemode right ""rotate selected models"" > view matrix models > #11,0.97415,-0.22588,0.0018652,-138.57,0.22253,0.96106,0.16387,95.54,-0.038806,-0.15922,0.98648,6.7868 > view matrix models > #11,0.96585,-0.22649,-0.12588,-138.21,0.22619,0.97394,-0.016833,95.582,0.12641,-0.012214,0.9919,1.7994 > ui mousemode right ""translate selected models"" > view matrix models > #11,0.96585,-0.22649,-0.12588,-139.04,0.22619,0.97394,-0.016833,94.632,0.12641,-0.012214,0.9919,4.2295 > select subtract #11 Nothing selected > select add #12 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #12,0.47022,-0.78813,0.39717,-92.074,0.57,-0.07237,-0.81845,76.56,0.67379,0.61124,0.41521,16.916 > view matrix models > #12,0.47022,-0.78813,0.39717,-90.21,0.57,-0.07237,-0.81845,75.434,0.67379,0.61124,0.41521,18.43 > ui mousemode right ""rotate selected models"" > view matrix models > #12,0.57635,-0.79924,0.17041,-88.746,0.41197,0.10407,-0.90524,75.329,0.70577,0.59193,0.38924,18.664 > ui mousemode right ""translate selected models"" > view matrix models > #12,0.57635,-0.79924,0.17041,-89.416,0.41197,0.10407,-0.90524,74.142,0.70577,0.59193,0.38924,18.149 > ui mousemode right ""rotate selected models"" > view matrix models > #12,0.51642,-0.81025,0.27714,-90.053,0.49652,0.019631,-0.8678,74.22,0.6977,0.58575,0.41244,18.024 > view matrix models > #12,0.22677,-0.9281,0.29529,-89.852,0.14487,-0.26768,-0.95256,75.606,0.96311,0.25879,0.073753,21.285 > view matrix models > #12,0.19806,-0.9549,0.22122,-89.314,0.13956,-0.19592,-0.97064,75.474,0.9702,0.22312,0.094463,21.28 > ui mousemode right ""translate selected models"" > view matrix models > #12,0.19806,-0.9549,0.22122,-92.511,0.13956,-0.19592,-0.97064,69.655,0.9702,0.22312,0.094463,18.365 > select subtract #12 Nothing selected > select add #13 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #13,0.77205,-0.19254,-0.60569,-82.478,-0.023229,0.94382,-0.32963,15.016,0.63514,0.26856,0.72421,23.332 > ui mousemode right ""rotate selected models"" > view matrix models > #13,0.5324,-0.23428,-0.81343,-84.107,0.57419,0.80602,0.14368,20.788,0.62198,-0.54355,0.56364,28.971 > ui mousemode right ""translate selected models"" > view matrix models > #13,0.5324,-0.23428,-0.81343,-88.194,0.57419,0.80602,0.14368,28.64,0.62198,-0.54355,0.56364,20.924 > ui mousemode right ""rotate selected models"" > view matrix models > #13,0.69806,-0.23706,-0.67566,-86.844,0.17974,0.97141,-0.15512,24.302,0.69311,-0.013161,0.72071,17.744 > ui mousemode right ""translate selected models"" > view matrix models > #13,0.69806,-0.23706,-0.67566,-84.388,0.17974,0.97141,-0.15512,20.057,0.69311,-0.013161,0.72071,24.161 > ui mousemode right ""rotate selected models"" > view matrix models > #13,0.60522,-0.25047,-0.75562,-85.038,0.40957,0.91191,0.025766,22.323,0.68261,-0.32508,0.6545,26.283 > ui mousemode right ""translate selected models"" > view matrix models > #13,0.60522,-0.25047,-0.75562,-86.46,0.40957,0.91191,0.025766,24.997,0.68261,-0.32508,0.6545,23.295 > ui mousemode right ""rotate selected models"" > view matrix models > #13,0.6291,-0.2508,-0.73575,-86.266,0.35267,0.93559,-0.017374,24.373,0.69272,-0.24854,0.67703,22.834 > ui mousemode right ""translate selected models"" > view matrix models > #13,0.6291,-0.2508,-0.73575,-85.834,0.35267,0.93559,-0.017374,23.559,0.69272,-0.24854,0.67703,23.737 > ui mousemode right ""rotate selected models"" > view matrix models > #13,0.16719,-0.90858,0.3828,-93.975,0.98333,0.18182,0.0020582,36.013,-0.071469,0.37607,0.92383,8.88 > ui mousemode right ""translate selected models"" > view matrix models > #13,0.16719,-0.90858,0.3828,-93.871,0.98333,0.18182,0.0020582,36.042,-0.071469,0.37607,0.92383,9.8479 > select subtract #13 Nothing selected > select add #14 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #14,0.82987,-0.15334,-0.53647,-82.352,-0.0080484,0.9581,-0.2863,12.59,0.5579,0.24191,0.79387,28.028 > ui mousemode right ""rotate selected models"" > view matrix models > #14,0.85901,-0.10637,-0.50079,-82.466,-0.035555,0.96342,-0.26562,12.093,0.51073,0.24597,0.8238,27.237 > view matrix models > #14,0.84229,-0.061399,-0.53552,-82.756,-0.082253,0.96722,-0.24026,11.336,0.53272,0.24642,0.80962,27.593 > view matrix models > #14,0.90445,0.24998,-0.34565,-84.91,-0.41986,0.37846,-0.82492,13.876,-0.075396,0.89122,0.44725,18 > ui mousemode right ""translate selected models"" > view matrix models > #14,0.90445,0.24998,-0.34565,-79.868,-0.41986,0.37846,-0.82492,0.61668,-0.075396,0.89122,0.44725,15.966 > view matrix models > #14,0.90445,0.24998,-0.34565,-78.337,-0.41986,0.37846,-0.82492,1.587,-0.075396,0.89122,0.44725,16.839 > view matrix models > #14,0.90445,0.24998,-0.34565,-78.35,-0.41986,0.37846,-0.82492,1.6627,-0.075396,0.89122,0.44725,16.828 > select subtract #14 Nothing selected > select add #13 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #13,0.16719,-0.90858,0.3828,-92.529,0.98333,0.18182,0.0020582,36.357,-0.071469,0.37607,0.92383,10.63 > view matrix models > #13,0.16719,-0.90858,0.3828,-92.316,0.98333,0.18182,0.0020582,35.719,-0.071469,0.37607,0.92383,9.511 > select subtract #13 Nothing selected > select add #14 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #14,0.90445,0.24998,-0.34565,-78.349,-0.41986,0.37846,-0.82492,1.6905,-0.075396,0.89122,0.44725,15.124 > select subtract #14 Nothing selected > select add #15 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #15,-0.44505,-0.43451,0.78303,-68.494,0.78012,-0.61746,0.10076,-10.491,0.43971,0.6557,0.61377,21.404 > view matrix models > #15,-0.44505,-0.43451,0.78303,-64.307,0.78012,-0.61746,0.10076,-7.2335,0.43971,0.6557,0.61377,23.793 > view matrix models > #15,-0.44505,-0.43451,0.78303,-64.64,0.78012,-0.61746,0.10076,-7.7332,0.43971,0.6557,0.61377,23.529 > select add #16 334 atoms, 346 bonds, 38 residues, 2 models selected > select subtract #15 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #16,0.80541,-0.17332,-0.56681,-35.382,-0.11187,0.89465,-0.43254,-34.428,0.58206,0.41178,0.70117,21.261 > view matrix models > #16,0.80541,-0.17332,-0.56681,-37.408,-0.11187,0.89465,-0.43254,-28.914,0.58206,0.41178,0.70117,36.148 > view matrix models > #16,0.80541,-0.17332,-0.56681,-38.157,-0.11187,0.89465,-0.43254,-28.45,0.58206,0.41178,0.70117,36.638 > view matrix models > #16,0.80541,-0.17332,-0.56681,-38.932,-0.11187,0.89465,-0.43254,-30.602,0.58206,0.41178,0.70117,36.494 > select add #15 334 atoms, 346 bonds, 38 residues, 2 models selected > select subtract #16 167 atoms, 173 bonds, 19 residues, 1 model selected > view matrix models > #15,-0.44505,-0.43451,0.78303,-63.366,0.78012,-0.61746,0.10076,-7.9838,0.43971,0.6557,0.61377,27.048 > ui mousemode right ""rotate selected models"" > view matrix models > #15,-0.58461,-0.8104,0.038533,-58.705,0.73867,-0.51202,0.4384,-11.035,-0.33555,0.28475,0.89796,17.859 > ui mousemode right ""translate selected models"" > view matrix models > #15,-0.58461,-0.8104,0.038533,-67.604,0.73867,-0.51202,0.4384,-8.2377,-0.33555,0.28475,0.89796,11.455 > ui mousemode right ""rotate selected models"" > view matrix models > #15,-0.60948,-0.77383,0.17239,-68.889,0.76474,-0.51649,0.38524,-7.5827,-0.20907,0.36663,0.90657,12.518 > ui mousemode right ""translate selected models"" > view matrix models > #15,-0.60948,-0.77383,0.17239,-68.612,0.76474,-0.51649,0.38524,-7.5913,-0.20907,0.36663,0.90657,13.335 > select subtract #15 Nothing selected > select add #16 167 atoms, 173 bonds, 19 residues, 1 model selected > ui mousemode right ""translate selected models"" > ui mousemode right ""rotate selected models"" > view matrix models > #16,0.92815,0.37182,0.016959,-43.931,-0.26787,0.69891,-0.66315,-30.11,-0.25843,0.61096,0.74829,24.356 > ui mousemode right ""translate selected models"" > view matrix models > #16,0.92815,0.37182,0.016959,-33.974,-0.26787,0.69891,-0.66315,-34.857,-0.25843,0.61096,0.74829,18.725 > ui mousemode right ""rotate selected models"" > view matrix models > #16,0.96478,0.23629,-0.11557,-31.949,-0.25708,0.75407,-0.6044,-35.382,-0.05567,0.61282,0.78826,21.065 > ui mousemode right ""translate selected models"" > view matrix models > #16,0.96478,0.23629,-0.11557,-34.243,-0.25708,0.75407,-0.6044,-34.188,-0.05567,0.61282,0.78826,23.158 > save /Users/praneetha/Desktop/PDC.cxs > select subtract #16 Nothing selected > select add #1 9359 atoms, 10096 bonds, 13 pseudobonds, 294 residues, 2 models selected > lighting full > show sel surfaces > select add #3 9526 atoms, 10269 bonds, 13 pseudobonds, 313 residues, 4 models selected > select subtract #1 167 atoms, 173 bonds, 19 residues, 2 models selected > show sel surfaces > select add #4 334 atoms, 346 bonds, 38 residues, 3 models selected > select add #16 501 atoms, 519 bonds, 57 residues, 4 models selected > select add #15 668 atoms, 692 bonds, 76 residues, 5 models selected > select add #14 835 atoms, 865 bonds, 95 residues, 6 models selected > select add #13 1002 atoms, 1038 bonds, 114 residues, 7 models selected > select add #12 1169 atoms, 1211 bonds, 133 residues, 8 models selected > select add #11 1336 atoms, 1384 bonds, 152 residues, 9 models selected > select add #10 1503 atoms, 1557 bonds, 171 residues, 10 models selected > select add #9 1670 atoms, 1730 bonds, 190 residues, 11 models selected > select add #8 1837 atoms, 1903 bonds, 209 residues, 12 models selected > select add #7 2004 atoms, 2076 bonds, 228 residues, 13 models selected > select add #6 2171 atoms, 2249 bonds, 247 residues, 14 models selected > select add #5 2338 atoms, 2422 bonds, 266 residues, 15 models selected > select subtract #3 2171 atoms, 2249 bonds, 247 residues, 14 models selected > show sel surfaces > save /Users/praneetha/Desktop/PDC.cxs ——— End of log from Tue Oct 10 14:58:47 2023 ——— opened ChimeraX session > select add #4 2171 atoms, 2249 bonds, 247 residues, 13 models selected > select subtract #4 2004 atoms, 2076 bonds, 228 residues, 12 models selected > select add #5 2004 atoms, 2076 bonds, 228 residues, 12 models selected > select subtract #5 1837 atoms, 1903 bonds, 209 residues, 11 models selected > select add #6 1837 atoms, 1903 bonds, 209 residues, 11 models selected > select subtract #6 1670 atoms, 1730 bonds, 190 residues, 10 models selected > select add #7 1670 atoms, 1730 bonds, 190 residues, 10 models selected > select subtract #7 1503 atoms, 1557 bonds, 171 residues, 9 models selected > select add #8 1503 atoms, 1557 bonds, 171 residues, 9 models selected > select subtract #8 1336 atoms, 1384 bonds, 152 residues, 8 models selected > select add #9 1336 atoms, 1384 bonds, 152 residues, 8 models selected > select subtract #9 1169 atoms, 1211 bonds, 133 residues, 7 models selected > select add #10 1169 atoms, 1211 bonds, 133 residues, 7 models selected > select subtract #10 1002 atoms, 1038 bonds, 114 residues, 6 models selected > select add #11 1002 atoms, 1038 bonds, 114 residues, 6 models selected > select subtract #11 835 atoms, 865 bonds, 95 residues, 5 models selected > select add #12 835 atoms, 865 bonds, 95 residues, 5 models selected > select subtract #12 668 atoms, 692 bonds, 76 residues, 4 models selected > select add #13 668 atoms, 692 bonds, 76 residues, 4 models selected > select subtract #13 501 atoms, 519 bonds, 57 residues, 3 models selected > select add #14 501 atoms, 519 bonds, 57 residues, 3 models selected > select subtract #14 334 atoms, 346 bonds, 38 residues, 2 models selected > select add #15 334 atoms, 346 bonds, 38 residues, 2 models selected > select subtract #15 167 atoms, 173 bonds, 19 residues, 1 model selected > select add #16 167 atoms, 173 bonds, 19 residues, 1 model selected > select subtract #16 Nothing selected > color #3 #942192ff > color #4 #942192ff > color #5 #942192ff > color #6 #942192ff > color #7 #942192ff > color #8 #942192ff > color #9 #942192ff > color #10 #942192ff > color #11 #942192ff > color #12 #942192ff > color #13 #942192ff > color #14 #942192ff > color #15 #942192ff > color #16 #942192ff > set bgColor white > save /Users/praneetha/Desktop/neuPDC.cxs ——— End of log from Fri Apr 5 00:17:00 2024 ——— opened ChimeraX session > ui tool show AlphaFold The cached device pixel ratio value was stale on window expose. Please file a QTBUG which explains how to reproduce. > alphafold predict IILGVIDSIILIIIIVYFSTGSSEKPEK Please cite ColabFold: Making protein folding accessible to all. Nature Methods (2022) if you use these predictions. The cached device pixel ratio value was stale on window expose. Please file a QTBUG which explains how to reproduce. Running AlphaFold prediction AlphaFold prediction finished Results in /Users/praneetha/Downloads/ChimeraX/AlphaFold/prediction_11 > open > /Users/praneetha/Downloads/ChimeraX/AlphaFold/prediction_11/best_model.pdb Chain information for best_model.pdb #17 --- Chain | Description A | No description available > select add #17 215 atoms, 217 bonds, 28 residues, 1 model selected > ui mousemode right ""translate selected models"" > view matrix models #17,1,0,0,13.862,0,1,0,-3.6704,0,0,1,-48.508 > ui mousemode right ""rotate selected models"" > view matrix models > #17,0.99796,-0.0053954,-0.063555,13.784,0.026808,0.93961,0.34119,-3.4019,0.057876,-0.3422,0.93784,-49.137 > view matrix models > #17,0.99187,-0.12539,-0.021881,13.373,0.12701,0.98626,0.10565,-2.5273,0.0083324,-0.10757,0.99416,-48.783 > view matrix models > #17,0.98514,-0.096329,0.14221,13.516,0.077449,0.98811,0.1328,-2.9392,-0.15331,-0.11981,0.98089,-50.253 > ui mousemode right ""translate selected models"" > ui mousemode right ""move picked models"" > view matrix models > #17,0.98514,-0.096329,0.14221,53.138,0.077449,0.98811,0.1328,9.9556,-0.15331,-0.11981,0.98089,-32.237 > ui mousemode right ""translate selected models"" > view matrix models > #17,0.98514,-0.096329,0.14221,-19.897,0.077449,0.98811,0.1328,12.97,-0.15331,-0.11981,0.98089,24.218 > view matrix models > #17,0.98514,-0.096329,0.14221,-28.66,0.077449,0.98811,0.1328,23.984,-0.15331,-0.11981,0.98089,66.651 > view matrix models > #17,0.98514,-0.096329,0.14221,-24.288,0.077449,0.98811,0.1328,42.639,-0.15331,-0.11981,0.98089,53.792 > view matrix models > #17,0.98514,-0.096329,0.14221,-29.068,0.077449,0.98811,0.1328,16.248,-0.15331,-0.11981,0.98089,72.255 > view matrix models > #17,0.98514,-0.096329,0.14221,-24.463,0.077449,0.98811,0.1328,55.266,-0.15331,-0.11981,0.98089,44.486 > view matrix models > #17,0.98514,-0.096329,0.14221,-22.557,0.077449,0.98811,0.1328,54.502,-0.15331,-0.11981,0.98089,32.265 > ui mousemode right ""rotate selected models"" > view matrix models > #17,0.65991,0.49491,0.56532,-23.241,-0.52511,0.84194,-0.12411,48.563,-0.53739,-0.21496,0.81548,28.472 > ui mousemode right ""translate selected models"" > view matrix models > #17,0.65991,0.49491,0.56532,-20.586,-0.52511,0.84194,-0.12411,47.047,-0.53739,-0.21496,0.81548,18.38 > style sel sphere Changed 215 atom styles > coulombic sel Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for best_model.pdb_A SES surface #17.1: minimum, -13.26, mean -1.02, maximum 11.77 To also show corresponding color key, enter the above coulombic command and add key true > view matrix models > #17,0.65991,0.49491,0.56532,-15.957,-0.52511,0.84194,-0.12411,43.12,-0.53739,-0.21496,0.81548,22.376 > ui mousemode right ""rotate selected models"" > view matrix models > #17,0.52579,0.38305,0.75948,-17.286,-0.28121,0.92094,-0.2698,45.201,-0.80279,-0.071714,0.59194,20.731 > ui mousemode right ""translate selected models"" > view matrix models > #17,0.52579,0.38305,0.75948,-21.429,-0.28121,0.92094,-0.2698,41.606,-0.80279,-0.071714,0.59194,18.151 > view matrix models > #17,0.52579,0.38305,0.75948,-14.613,-0.28121,0.92094,-0.2698,43.381,-0.80279,-0.071714,0.59194,11.633 > view matrix models > #17,0.52579,0.38305,0.75948,-25.823,-0.28121,0.92094,-0.2698,37.912,-0.80279,-0.071714,0.59194,16.065 > view matrix models > #17,0.52579,0.38305,0.75948,-24.964,-0.28121,0.92094,-0.2698,37.432,-0.80279,-0.071714,0.59194,13.757 > color #17 #ff000cff > color #17 #ff0c19ff > view matrix models > #17,0.52579,0.38305,0.75948,-21.607,-0.28121,0.92094,-0.2698,39.812,-0.80279,-0.071714,0.59194,14.851 > select subtract #17 1 model selected Fetching compressed P22629 UniProt info from https://www.uniprot.org/uniprot/P22629.xml > alphafold search P22629 Fetching AlphaFold database settings from https://www.rbvi.ucsf.edu/chimerax/data/status/alphafold_database3.json > alphafold match P22629 Fetching compressed AlphaFold P22629 from https://alphafold.ebi.ac.uk/files/AF-P22629-F1-model_v3.cif 1 AlphaFold model found using UniProt identifier: P22629 (UniProt P22629) Sequence Similarity --- AlphaFold Model| Query Sequence| Identity %| Coverage % P22629 | P22629 | 100.0 | 100.0 Opened 1 AlphaFold model > select add #181329 atoms, 1354 bonds, 183 residues, 1 model selected > view matrix models #18,1,0,0,28.019,0,1,0,3.6047,0,0,1,-47.534> view matrix > models #18,1,0,0,49.564,0,1,0,13.416,0,0,1,-57.18> view matrix models > #18,1,0,0,52.553,0,1,0,17.083,0,0,1,-49.706> coulombic selUsing Amber 20 > recommended default charges and atom types for standard residues Coulombic values for AlphaFold P22629_A SES surface #18.1: minimum, -11.63, mean -0.88, maximum 12.08 To also show corresponding color key, enter the above coulombic command and add key true The cached device pixel ratio value was stale on window expose. Please file a QTBUG which explains how to reproduce. > close #18> open /Users/praneetha/Downloads/6j6j.cif6j6j.cif title: Biotin-bound streptavidin [more info...] | Chain information for 6j6j.cif #18 --- Chain | Description | UniProt A B C D | Streptavidin | SAV_STRAV 16-134 Non-standard residues in 6j6j.cif #18 --- BTN — biotin > select add #18 3624 atoms, 3704 bonds, 492 residues, 1 model selected > view matrix models #18,1,0,0,-93.398,0,1,0,-55.121,0,0,1,-6.3056 > view matrix models #18,1,0,0,-84.126,0,1,0,-49.326,0,0,1,-4.444 > view matrix models #18,1,0,0,-81.32,0,1,0,-49.54,0,0,1,-11.404 > view matrix models #18,1,0,0,-101.74,0,1,0,-29.161,0,0,1,-29.227 > view matrix models #18,1,0,0,-95.95,0,1,0,-25.726,0,0,1,-28.71 > view matrix models #18,1,0,0,-98.559,0,1,0,-24.751,0,0,1,-24.385 > coulombic sel The following residues are missing heavy (non-hydrogen) atoms, which may result in inaccurate electrostatics: 6j6j.cif #18/A SER 45 6j6j.cif #18/A ASP 128 6j6j.cif #18/A LYS 134 6j6j.cif #18/B SER 45 6j6j.cif #18/B ASP 128 6j6j.cif #18/B LYS 134 6j6j.cif #18/C SER 45 6j6j.cif #18/C ASP 128 6j6j.cif #18/C LYS 134 6j6j.cif #18/D SER 45 6j6j.cif #18/D ASP 128 6j6j.cif #18/D LYS 134 Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for 6j6j.cif_A SES surface #18.1: minimum, -10.17, mean -0.12, maximum 10.06 Coulombic values for 6j6j.cif_B SES surface #18.2: minimum, -10.25, mean -0.06, maximum 10.82 Coulombic values for 6j6j.cif_C SES surface #18.3: minimum, -10.23, mean -0.09, maximum 10.06 Coulombic values for 6j6j.cif_D SES surface #18.4: minimum, -10.24, mean -0.11, maximum 10.82 To also show corresponding color key, enter the above coulombic command and add key true > color #18 #455d06ff > select subtract #18 4 models selected > select add #18 3624 atoms, 3704 bonds, 492 residues, 1 model selected > close #18 > save ""/Users/praneetha/Documents/Lab Stuff/PDC NDs/Illustrsations PDCs and > PDEs/neuPDC NDs with Tm Peptide.cxs"" ===== Log before crash end ===== Log: Startup Messages --- notes | available bundle cache has not been initialized yet Database-fetch provider 'redo' in bundle Map specified unknown data format 'MTZ' UCSF ChimeraX version: 1.8rc202405102050 (2024-05-10) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 INTEL-22.5.11 OpenGL renderer: Intel(R) Iris(TM) Plus Graphics 645 OpenGL vendor: Intel Inc. Python: 3.11.4 Locale: UTF-8 Qt version: PyQt6 6.6.1, Qt 6.6.1 Qt runtime version: 6.6.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro15,4 Processor Name: Quad-Core Intel Core i5 Processor Speed: 1.4 GHz Number of Processors: 1 Total Number of Cores: 4 L2 Cache (per Core): 256 KB L3 Cache: 6 MB Hyper-Threading Technology: Enabled Memory: 8 GB System Firmware Version: 2022.140.5.0.0 (iBridge: 21.16.6074.0.0,0) OS Loader Version: 580.140.1~8 Software: System Software Overview: System Version: macOS 14.6.1 (23G93) Kernel Version: Darwin 23.6.0 Time since boot: 1 day, 3 hours, 30 minutes Graphics/Displays: Intel Iris Plus Graphics 645: Chipset Model: Intel Iris Plus Graphics 645 Type: GPU Bus: Built-In VRAM (Dynamic, Max): 1536 MB Vendor: Intel Device ID: 0x3ea6 Revision ID: 0x0001 Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Framebuffer Depth: 30-Bit Color (ARGB2101010) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal 24B1W1: Resolution: 1920 x 1080 (1080p FHD - Full High Definition) UI Looks like: 1920 x 1080 @ 60.00Hz Framebuffer Depth: 30-Bit Color (ARGB2101010) Display Serial Number: GZBL5HA013298 Mirror: Off Online: Yes Rotation: Supported Adapter Type: DVI or HDMI Installed Packages: alabaster: 0.7.16 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 2.4.1 Babel: 2.15.0 beautifulsoup4: 4.12.3 blockdiag: 3.0.0 blosc2: 2.0.0 build: 1.2.1 certifi: 2023.11.17 cftime: 1.6.3 charset-normalizer: 3.3.2 ChimeraX-AddCharge: 1.5.17 ChimeraX-AddH: 2.2.6 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.5 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.12.6 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.1.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.57 ChimeraX-AtomicLibrary: 14.0.3 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.4.6 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.12.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.3 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.4 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.4 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.6 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.8rc202405102050 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.3 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2.1 ChimeraX-DiffPlot: 1.0 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-Label: 1.1.9 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.1.6 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.3 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.7 ChimeraX-MedicalToolbar: 1.0.2 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.14.1 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.15 ChimeraX-ModelPanel: 1.5 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.1 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.1 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.13.4 ChimeraX-PDB: 2.7.5 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.1 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.4.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.2 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 1.3.3 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.11.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.16.4 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.39 ChimeraX-uniprot: 2.3 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.1 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.4 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.2.1 cxservices: 1.2.2 cycler: 0.12.1 Cython: 3.0.10 debugpy: 1.8.1 decorator: 5.1.1 docutils: 0.20.1 executing: 2.0.1 filelock: 3.13.4 fonttools: 4.51.0 funcparserlib: 2.0.0a0 glfw: 2.7.0 grako: 3.16.5 h5py: 3.11.0 html2text: 2024.2.26 idna: 3.7 ihm: 1.0 imagecodecs: 2024.1.1 imagesize: 1.4.1 ipykernel: 6.29.2 ipython: 8.21.0 ipywidgets: 8.1.2 jedi: 0.19.1 jinja2: 3.1.4 jupyter-client: 8.6.0 jupyter-core: 5.7.2 jupyterlab-widgets: 3.0.10 kiwisolver: 1.4.5 line-profiler: 4.1.2 lxml: 5.2.1 lz4: 4.3.3 MarkupSafe: 2.1.5 matplotlib: 3.8.4 matplotlib-inline: 0.1.7 msgpack: 1.0.8 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.10.0 numpy: 1.26.4 openvr: 1.26.701 packaging: 23.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pexpect: 4.9.0 pillow: 10.3.0 pip: 24.0 pkginfo: 1.10.0 platformdirs: 4.2.1 prompt-toolkit: 3.0.43 psutil: 5.9.8 ptyprocess: 0.7.0 pure-eval: 0.2.2 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 pygments: 2.17.2 pynmrstar: 3.3.4 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.3401 pyparsing: 3.1.2 pyproject-hooks: 1.1.0 PyQt6-commercial: 6.6.1 PyQt6-Qt6: 6.6.3 PyQt6-sip: 13.6.0 PyQt6-WebEngine-commercial: 6.6.0 PyQt6-WebEngine-Qt6: 6.6.3 python-dateutil: 2.9.0.post0 pytz: 2024.1 pyzmq: 26.0.3 qtconsole: 5.5.1 QtPy: 2.4.1 RandomWords: 0.4.0 requests: 2.31.0 scipy: 1.13.0 setuptools: 69.5.1 setuptools-scm: 8.0.4 sfftk-rw: 0.8.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.5 sphinx: 7.2.6 sphinx-autodoc-typehints: 2.0.1 sphinxcontrib-applehelp: 1.0.8 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.6 sphinxcontrib-htmlhelp: 2.0.5 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.7 sphinxcontrib-serializinghtml: 1.1.10 stack-data: 0.6.3 superqt: 0.6.3 tables: 3.8.0 tcia-utils: 1.5.1 tifffile: 2024.1.30 tinyarray: 1.2.4 tornado: 6.4 traitlets: 5.14.2 typing-extensions: 4.11.0 tzdata: 2024.1 urllib3: 2.2.1 wcwidth: 0.2.13 webcolors: 1.13 wheel: 0.43.0 wheel-filename: 1.4.1 widgetsnbextension: 4.0.10 }}} " defect accepted normal Core all ChimeraX