id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 18330 Crash on Mac waking from sleep chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-15.5-arm64-arm-64bit ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC) Description Last time you used ChimeraX it crashed. This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX. 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unallocated=2.8G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 256K 2 \nActivity Tracing 256K 1 \nCG image 624K 30 \nColorSync 656K 33 \nCoreAnimation 1008K 61 \nCoreGraphics 48K 3 \nCoreUI image data 4944K 35 \nFoundation 48K 2 \nKernel Alloc Once 32K 1 \nMALLOC 2.2G 103 \nMALLOC guard page 288K 18 \nMach message 192K 5 \nOpenGL GLSL 384K 4 \nSTACK GUARD 656K 41 \nStack 194.4M 42 \nStack Guard 56.0M 1 \nVM_ALLOCATE 167.4M 173 \nVM_ALLOCATE (reserved) 256.0M 4 reserved VM address space (unallocated)\n__AUTH 5521K 698 \n__AUTH_CONST 77.4M 945 \n__CTF 824 1 \n__DATA 34.0M 1079 \n__DATA_CONST 36.8M 1098 \n__DATA_DIRTY 2778K 342 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__INFO_FILTER 8 1 \n__LINKEDIT 646.0M 147 \n__OBJC_RO 61.4M 1 \n__OBJC_RW 2396K 1 \n__TEXT 1.3G 1117 \n__TEXT (graphics) 160K 1 \n__TPRO_CONST 128K 2 \ndyld private memory 2336K 21 \nmapped file 284.7M 63 \npage table in kernel 1526K 1 \nshared memory 3168K 25 \n=========== ======= ======= \nTOTAL 5.3G 6104 \nTOTAL, minus reserved VM space 5.0G 6104 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""logWritingSignature"" : ""c6fa742e92c9422c8ba77390c157418c29e1ebc8"", ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""639124e81d92412bfb4880b3"", ""factorPackIds"" : { }, ""deploymentId"" : 240000012 }, { ""rolloutId"" : ""64b21a7351cbb02ce3442e4e"", ""factorPackIds"" : { ""REMINDERS_GROCERY"" : ""6647f0f7b6a75d3dc32993e7"" }, ""deploymentId"" : 240000042 } ], ""experiments"" : [ ] } } ===== Log before crash start ===== Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.9 (2024-12-11) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/jxd162630/Documents/Texas/Learning/data/1azv.cif 1azv.cif title: Familial als mutant G37R cuznsod (human) [more info...] Chain information for 1azv.cif #1 --- Chain | Description | UniProt A B | COPPER/ZINC SUPEROXIDE DISMUTASE | SODC_HUMAN 1-153 Non-standard residues in 1azv.cif #1 --- CU — copper (II) ion ZN — zinc ion > open /Users/jxd162630/Documents/Texas/Learning/effAlph.defattr Summary of feedback from opening /Users/jxd162630/Documents/Texas/Learning/effAlph.defattr --- note | Assigned attribute 'effectiveAlphabet' to 132 residues using match mode: 1-to-1 > select /B 1209 atoms, 1136 bonds, 8 pseudobonds, 245 residues, 2 models selected > hide sel cartoons > hide sel atoms > ui tool show ""Render/Select by Attribute"" > key blue-white-red :1.0 :6.2 :11.3 showTool true > ui mousemode right ""color key"" > key blue-white-red :1.0 :6.2 :11.3 white: > key blue:1.0 white:6.2 red:11.3 white: white: > key blue:1.0 white:6.2 red:11.3 white: white: white: > key blue:1.0 white:6.2 red:11.3 white: white: white: white: > key blue:1.0 white:6.2 red:11.3 white: white: white: white: white: > key blue:1.0 white:6.2 red:11.3 white: white: white: white: white: white: > key blue:1.0 white:6.2 red:11.3 white: white: white: white: white: white: > white: > key blue:1.0 white:2 red:11.3 white: white: white: white: white: white: > white: > key blue:1.0 white:2 red:3 white: white: white: white: white: white: white: > key blue:1.0 white:2 red:3 white:4 white: white: white: white: white: white: > key blue:1.0 white:2 red:3 white:4 white:5 white: white: white: white: > white: > key blue:1.0 white:2 red:3 white:4 white:5 white:6 white: white: white: > white: > key blue:1.0 white:2 red:3 white:4 white:5 white:6 white:7 white: white: > white: > key blue:1.0 white:2 red:3 white:4 white:5 white:6 white:7 white:8 white: > white: > key blue:1.0 white:2 red:3 white:4 white:5 white:6 white:7 white:8 white:9 > white: > key blue:1.0 white:2 red:3 white:4 white:5 white:6 white:7 white:8 white:9 > white:1 > key blue:1.0 white:2 red:3 white:4 white:5 white:6 white:7 white:8 white:9 > white:10 > key blue:1.0 white:2 red:3 white:4 white:5 white:6 white:7 white:8 white:9 > white:10 white: > key blue:1.0 white:2 red:3 white:4 white:5 white:6 white:7 white:8 white:9 > white:10 white:1 > key pos 1,0.08000 Key is partially or completely offscreen > key brbg-11 :1.0 :2 :3 :4 :5 :6 :7 :8 :9 :10 :1 > key rdylgn-11 :1.0 :2 :3 :4 :5 :6 :7 :8 :9 :10 :1 > key ^rdylgn-11 :1 :10 :9 :8 :7 :6 :5 :4 :3 :2 :1.0 > key spectral-11 :1 :10 :9 :8 :7 :6 :5 :4 :3 :2 :1.0 > key set3-11 :1 :10 :9 :8 :7 :6 :5 :4 :3 :2 :1.0 > key rdylbu-11 :1 :10 :9 :8 :7 :6 :5 :4 :3 :2 :1.0 > key ^rdylbu-11 :1.0 :2 :3 :4 :5 :6 :7 :8 :9 :10 :1 > key ^rdylbu-11 :1.0 :2 :3 :4 :5 :6 :7 :8 :9 :10 :11 > key rdylbu-11 :11 :10 :9 :8 :7 :6 :5 :4 :3 :2 :1.0 > key ^rdylbu-11 :1.0 :2 :3 :4 :5 :6 :7 :8 :9 :10 :11 > key ^rdylbu-11 :1.0 :2 :3 :4 :5 :6 :7 :8 :9 :10 :1 > key ^rdylbu-11 :1.0 :2 :3 :4 :5 :6 :7 :8 :9 :2 :1 > key ^rdylbu-11 :1.0 :2 :3 :4 :5 :6 :7 :8 :3 :2 :1 > key ^rdylbu-11 :1.0 :2 :3 :4 :5 :6 :7 :4 :3 :2 :1 > key ^rdylbu-11 :1.0 :2 :3 :4 :5 :6 :5 :4 :3 :2 :1 > key ^rdylbu-11 :1.0 :2 :3 :4 :7 :6 :5 :4 :3 :2 :1 > key ^rdylbu-11 :1.0 :2 :3 :8 :7 :6 :5 :4 :3 :2 :1 > key ^rdylbu-11 :1.0 :2 :9 :8 :7 :6 :5 :4 :3 :2 :1 > key ^rdylbu-11 :1.0 :1 :9 :8 :7 :6 :5 :4 :3 :2 :1 > key ^rdylbu-11 :1.0 :10 :9 :8 :7 :6 :5 :4 :3 :2 :1 > key ^rdylbu-11 :1. :10 :9 :8 :7 :6 :5 :4 :3 :2 :1 > key ^rdylbu-11 :11. :10 :9 :8 :7 :6 :5 :4 :3 :2 :1 > key ^rdylbu-11 :11 :10 :9 :8 :7 :6 :5 :4 :3 :2 :1 > ui mousemode right translate > select /A 1205 atoms, 1136 bonds, 8 pseudobonds, 241 residues, 2 models selected > ui tool show ""Render/Select by Attribute"" > color byattribute r:effectiveAlphabet #!1 target abcs palette > 1.0037,#a50026:2,#d73027:3,#f46d43:4,#fdae61:5,#fee090:6,#ffffbf:7,#e0f3f8:8,#abd9e9:9,#74add1:10,#4575b4:11,#313695 2414 atoms, 486 residues, atom effectiveAlphabet range 1 to 11.3 > key rdylbu-11 :1 :2 :3 :4 :5 :6 :7 :8 :9 :10 :11 showTool true > ui mousemode right ""color key"" > ui mousemode right translate > key rdylbu-11 :1 :2 :3 :4 :5 :6 :7 :8 :9 :10 :11 showTool true > ui mousemode right ""color key"" > key rdylbu-11 :1 :2 :3 :4 :5 :6 :7 :8 :9 :10 :11 > key ticks true > key rdylbu-11 :1 :2 :3 :4 :5 :6 :7 :8 :9 :10 :11 > ui mousemode right translate > select 2414 atoms, 2272 bonds, 16 pseudobonds, 486 residues, 3 models selected > select nothing Expected an objects specifier or a keyword > set bgColor white > set bgColor black > lighting full > graphics silhouettes true > ui tool show ""Side View"" > view > view orient > view > set bgColor gray > set bgColor black > color byattribute r:effectiveAlphabet #!1 target abcs palette > 1.0037,#a50026:2,#d73027:3,#f46d43:4,#fdae61:5,#fee090:6,#ffffbf:7,#e0f3f8:8,#abd9e9:9,#74add1:10,#4575b4:11,#313695 2414 atoms, 486 residues, atom effectiveAlphabet range 1 to 11.3 > key rdylbu-11 :1 :2 :3 :4 :5 :6 :7 :8 :9 :10 :11 showTool true > ui mousemode right ""color key"" > key size 0.26000,0.05000 Key is partially or completely offscreen > key size 0.27000,0.05000 Key is partially or completely offscreen > key size 0.28000,0.05000 Key is partially or completely offscreen > key size 0.29000,0.05000 Key is partially or completely offscreen > key size 0.30000,0.05000 Key is partially or completely offscreen > key size 0.31000,0.05000 Key is partially or completely offscreen > key size 0.32000,0.05000 Key is partially or completely offscreen > key size 0.33000,0.05000 Key is partially or completely offscreen > key pos 0.99000,0.08000 Key is partially or completely offscreen > key pos 0.98000,0.08000 Key is partially or completely offscreen > key pos 0.97000,0.08000 Key is partially or completely offscreen > key pos 0.96000,0.08000 Key is partially or completely offscreen > key pos 0.95000,0.08000 Key is partially or completely offscreen > key pos 0.94000,0.08000 Key is partially or completely offscreen > key pos 0.93000,0.08000 Key is partially or completely offscreen > key pos 0.92000,0.08000 Key is partially or completely offscreen > key pos 0.91000,0.08000 Key is partially or completely offscreen > key pos 0.90000,0.08000 Key is partially or completely offscreen > key pos 0.89000,0.08000 Key is partially or completely offscreen > key pos 0.88000,0.08000 Key is partially or completely offscreen > key pos 0.87000,0.08000 Key is partially or completely offscreen > key pos 0.86000,0.08000 Key is partially or completely offscreen > key pos 0.85000,0.08000 Key is partially or completely offscreen > key pos 0.84000,0.08000 Key is partially or completely offscreen > key pos 0.83000,0.08000 Key is partially or completely offscreen > key pos 0.82000,0.08000 Key is partially or completely offscreen > key pos 0.81000,0.08000 Key is partially or completely offscreen > key pos 0.80000,0.08000 Key is partially or completely offscreen > key pos 0.79000,0.08000 Key is partially or completely offscreen > key pos 0.78000,0.08000 Key is partially or completely offscreen > key pos 0.77000,0.08000 Key is partially or completely offscreen > key pos 0.76000,0.08000 Key is partially or completely offscreen > key pos 0.75000,0.08000 Key is partially or completely offscreen > key pos 0.74000,0.08000 Key is partially or completely offscreen > key pos 0.73000,0.08000 Key is partially or completely offscreen > key pos 0.72000,0.08000 Key is partially or completely offscreen > key pos 0.71000,0.08000 Key is partially or completely offscreen > key pos 0.70000,0.08000 Key is partially or completely offscreen > key pos 0.69000,0.08000 Key is partially or completely offscreen > key pos 0.68000,0.08000 Key is partially or completely offscreen > key pos 0.67000,0.08000 > key pos 0.66000,0.08000 > key pos 0.65000,0.08000 > key pos 0.64000,0.08000 > key pos 0.63000,0.08000 > key pos 0.62000,0.08000 > key pos 0.61000,0.08000 > key pos 0.60000,0.08000 > key pos 0,0.08000 > key pos 0.10000,0.08000 > key pos 0.10000,0.09000 > key pos 0.10000,0.10000 > key pos 0.10000,0.11000 > key pos 0.10000,0.12000 > key pos 0.10000,0.13000 > key pos 0.10000,0.14000 > key pos 0.10000,0.15000 > key pos 0.10000,0.16000 > key pos 0.10000,0.17000 > key pos 0.10000,0.18000 > key pos 0.10000,0.19000 > key pos 0.10000,0.20000 > key pos 0.10000,0.21000 > key pos 0.10000,0.22000 > key pos 0.10000,0.23000 > key pos 0.10000,0.24000 > key pos 0.10000,0.25000 > key pos 0.10000,0.26000 > key pos 0.10000,0.27000 > key pos 0.10000,0.26000 > key pos 0.10000,0.25000 > key pos 0.10000,0.24000 > key pos 0.10000,0.23000 > key pos 0.10000,0.22000 > key pos 0.756399,0.551409 size 0.0404013,0.0779741 > undo > key pos 0.0816691,0.103675 > key pos 0.142106,0.18782 size 0.0112265,0.0145684 > key pos 0.165842,0.181155 size 0.025623,0.00216746 > key pos 0.17584,0.18116 > key size 0.03562,0.00217 > key size 0.04562,0.00217 > key size 0.05562,0.00217 > key size 0.06562,0.00217 > key size 0.07562,0.00217 > key size 0.08562,0.00217 > key size 0.09562,0.00217 > key size 0.10562,0.00217 > key size 0.11562,0.00217 > key size 0.12562,0.00217 > key size 0.13562,0.00217 > key size 0.14562,0.00217 > key size 0.15562,0.00217 > key size 0.16562,0.00217 > key size 0.17562,0.00217 > key size 0.18562,0.00217 > key size 0.19562,0.00217 > key size 0.20562,0.00217 > key size 0.21562,0.00217 > key size 0.22562,0.00217 > key size 0.23562,0.00217 > key size 0.24562,0.00217 > key size 0.25562,0.00217 > key size 0.26562,0.00217 > key size 0.27562,0.00217 > key size 0.28562,0.00217 > key size 0.29562,0.00217 > key size 0.30562,0.00217 > key size 0.31562,0.00217 > key size 0.32562,0.00217 > key size 0.33562,0.00217 > key size 0.33562,0.01217 > key size 0.33562,0.02217 > key size 0.33562,0.03217 > key size 0.33562,0.04217 > key size 0.33562,0.05217 > key size 0.33562,0.06217 > key size 0.33562,0.07217 > key size 0.33562,0.06217 > key size 0.33562,0.05217 > key size 0.33562,0.04217 > key pos 0.16584,0.18116 > key pos 0.15584,0.18116 > key pos 0.14584,0.18116 > key pos 0.13584,0.18116 > key pos 0.12584,0.18116 > key pos 0.11584,0.18116 > key pos 0.10584,0.18116 > key pos 0.09584,0.18116 > key pos 0.08584,0.18116 > key pos 0.07584,0.18116 > key pos 0.07,0.18116 > key pos 0.07000,0.17116 > key pos 0.07000,0.16116 > key pos 0.07000,0.15116 > key pos 0.07000,0.14116 > key pos 0.07000,0.13116 > key pos 0.07000,0.12116 > key pos 0.07000,0.11116 > key pos 0.06000,0.11116 > ui mousemode right translate 'Attribute name' field is blank Attribute names cannot contain whitespace > save /Users/jxd162630/Documents/Texas/Learning/effAlph_col.defattr attrName > r:EffectiveAlphabet Unknown/unregistered Residue attribute EffectiveAlphabet > save /Users/jxd162630/Documents/Texas/Learning/effAlph_col.defattr attrName > r:effectiveAlphabet Saved attribute 'effectiveAlphabet' of 132 residues using match mode: 1-to-1 to /Users/jxd162630/Documents/Texas/Learning/effAlph_col.defattr > select ~sel & ##selected Nothing selected > select ~sel & ##selected Nothing selected > select A:/46 Expected an objects specifier or a keyword > select A/:46 Expected an objects specifier or a keyword > select A/ Expected an objects specifier or a keyword > select A/ Expected an objects specifier or a keyword > select /A:46 10 atoms, 10 bonds, 1 residue, 1 model selected > select /A:48 10 atoms, 10 bonds, 1 residue, 1 model selected > select /A:148 7 atoms, 6 bonds, 1 residue, 1 model selected > select /A:143 11 atoms, 10 bonds, 1 residue, 1 model selected > select /A:143 11 atoms, 10 bonds, 1 residue, 1 model selected > ui tool show ""Render/Select by Attribute"" > open /Users/jxd162630/Documents/Texas/Learning/effAlph_col.defattr Summary of feedback from opening /Users/jxd162630/Documents/Texas/Learning/effAlph_col.defattr --- note | Assigned attribute 'effectiveAlphabet' to 132 residues using match mode: 1-to-1 ===== Log before crash end ===== Log: Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.9 (2024-12-11) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/jxd162630/Documents/Texas/Sanabria/PDB/Mtt-open.pdb Chain information for Mtt-open.pdb #1 --- Chain | Description X | No description available Computing secondary structure OpenGL version: 4.1 Metal - 89.4 OpenGL renderer: Apple M3 Pro OpenGL vendor: Apple Python: 3.11.4 Locale: en_US.UTF-8 Qt version: PyQt6 6.7.1, Qt 6.7.1 Qt runtime version: 6.7.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: Mac15,6 Model Number: MRX33LL/A Chip: Apple M3 Pro Total Number of Cores: 11 (5 performance and 6 efficiency) Memory: 18 GB System Firmware Version: 11881.121.1 OS Loader Version: 11881.121.1 Software: System Software Overview: System Version: macOS 15.5 (24F74) Kernel Version: Darwin 24.5.0 Time since boot: 28 days, 7 hours, 13 minutes Graphics/Displays: Apple M3 Pro: Chipset Model: Apple M3 Pro Type: GPU Bus: Built-In Total Number of Cores: 14 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: VX2718 Series: Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition) UI Looks like: 1920 x 1080 @ 144.00Hz Main Display: Yes Mirror: Off Online: Yes Rotation: Supported Color LCD: Display Type: Built-in Liquid Retina XDR Display Resolution: 3024 x 1964 Retina Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal Installed Packages: alabaster: 1.0.0 anyio: 4.7.0 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.0 auditwheel: 6.1.0 babel: 2.16.0 beautifulsoup4: 4.12.3 blockdiag: 3.0.0 blosc2: 3.0.0 build: 1.2.1 certifi: 2023.11.17 cftime: 1.6.4.post1 charset-normalizer: 3.4.0 ChimeraX-AddCharge: 1.5.18 ChimeraX-AddH: 2.2.6 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.5 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.16.1 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.58.8 ChimeraX-AtomicLibrary: 14.1.11 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.4.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.4 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.6 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.9 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.4 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2.6 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.3 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.2.1 ChimeraX-Label: 1.1.14 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.6 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.7.2 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.14.2 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.18 ChimeraX-ModelPanel: 1.5 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.14 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.6 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.2 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.2 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.6 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.14 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.0 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.18.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.41 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.4 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.3.1 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.0.10 debugpy: 1.8.9 decorator: 5.1.1 docutils: 0.21.2 executing: 2.1.0 filelock: 3.15.4 fonttools: 4.55.3 funcparserlib: 2.0.0a0 glfw: 2.8.0 grako: 3.16.5 h11: 0.14.0 h5py: 3.12.1 html2text: 2024.2.26 httpcore: 1.0.7 httpx: 0.28.1 idna: 3.10 ihm: 1.3 imagecodecs: 2024.6.1 imagesize: 1.4.1 ipykernel: 6.29.5 ipython: 8.26.0 ipywidgets: 8.1.5 jedi: 0.19.1 Jinja2: 3.1.4 jupyter_client: 8.6.2 jupyter_core: 5.7.2 jupyterlab_widgets: 3.0.13 kiwisolver: 1.4.7 line_profiler: 4.1.3 lxml: 5.2.2 lz4: 4.3.3 MarkupSafe: 3.0.2 matplotlib: 3.9.2 matplotlib-inline: 0.1.7 msgpack: 1.0.8 ndindex: 1.9.2 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.10.2 numpy: 1.26.4 openvr: 1.26.701 packaging: 23.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pexpect: 4.9.0 pillow: 10.4.0 pip: 24.2 pkginfo: 1.11.1 platformdirs: 4.3.6 prompt_toolkit: 3.0.48 psutil: 6.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 pyelftools: 0.31 Pygments: 2.18.0 pynmrstar: 3.3.4 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.3401 pyparsing: 3.2.0 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.7.1 PyQt6-Qt6: 6.7.3 PyQt6-WebEngine-commercial: 6.7.0 PyQt6-WebEngine-Qt6: 6.7.3 PyQt6-WebEngineSubwheel-Qt6: 6.7.3 PyQt6_sip: 13.8.0 python-dateutil: 2.9.0.post0 pytz: 2024.2 pyzmq: 26.2.0 qtconsole: 5.5.2 QtPy: 2.4.2 qtshim: 1.0 RandomWords: 0.4.0 requests: 2.32.3 scipy: 1.14.0 setuptools: 72.1.0 sfftk-rw: 0.8.1 six: 1.16.0 sniffio: 1.3.1 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.6 Sphinx: 8.0.2 sphinx-autodoc-typehints: 2.2.3 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 stack-data: 0.6.3 superqt: 0.6.3 tables: 3.10.1 tcia_utils: 1.5.1 tifffile: 2024.7.24 tinyarray: 1.2.4 tornado: 6.4.2 traitlets: 5.14.3 typing_extensions: 4.12.2 tzdata: 2024.2 urllib3: 2.2.3 wcwidth: 0.2.13 webcolors: 24.6.0 wheel: 0.43.0 wheel-filename: 1.4.1 widgetsnbextension: 4.0.13 }}} " defect closed normal Window Toolkit duplicate all ChimeraX