id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 1830 'vop' alias not known/registered with only molmap (and not 'volume') command chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: Linux-4.15.0-47-generic-x86_64-with-debian-stretch-sid ChimeraX Version: 0.7 (2018-08-07) Description (Describe the actions that caused this problem to occur here) Unknown command: vop subtract #1 #4 minrms Log: Startup Errors --- error | Error preloading available bundles: AttributeError: 'list' object has no attribute 'split' File ""/home/christl/EMprograms/chimerax/ucsf-chimerax_0.7_amd64/usr/lib/ucsf- chimerax/lib/python3.6/site-packages/chimerax/core/toolshed/installed.py"", line 292, in _extract_extra_keywords all_kwds = [k.strip() for k in kwds.split(',')] _See log for complete Python traceback._ If you wish to report this error, send mail to [chimerax- bugs@cgl.ucsf.edu](mailto:chimerax-bugs@cgl.ucsf.edu) and describe what you were doing and include a copy of the contents of the log. Don't include any data you wish to remain private since a publicly viewable bug report will be created. note | Traceback (most recent call last): File ""/home/christl/EMprograms/chimerax/ucsf- chimerax_0.7_amd64/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/core/toolshed/__init__.py"", line 337, in __init__ self.init_available_from_cache(logger) File ""/home/christl/EMprograms/chimerax/ucsf- chimerax_0.7_amd64/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/core/toolshed/__init__.py"", line 444, in init_available_from_cache abc.load_from_cache() File ""/home/christl/EMprograms/chimerax/ucsf- chimerax_0.7_amd64/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/core/toolshed/available.py"", line 61, in load_from_cache b = _build_bundle(d) File ""/home/christl/EMprograms/chimerax/ucsf- chimerax_0.7_amd64/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/core/toolshed/available.py"", line 242, in _build_bundle keywords = _extract_extra_keywords(keywords) File ""/home/christl/EMprograms/chimerax/ucsf- chimerax_0.7_amd64/usr/lib/ucsf-chimerax/lib/python3.6/site- packages/chimerax/core/toolshed/installed.py"", line 292, in _extract_extra_keywords all_kwds = [k.strip() for k in kwds.split(',')] AttributeError: 'list' object has no attribute 'split' UCSF ChimeraX version: 0.7 (2018-08-07) OpenGL version: 4.5 (Core Profile) Mesa 18.0.5 OpenGL renderer: Mesa DRI Intel(R) HD Graphics 630 (Kaby Lake GT2) OpenGL vendor: Intel Open Source Technology Center How to cite UCSF ChimeraX open ""/home/christl/Dropbox (UMass Medical School)/2017_PDChristl/Christl_EM/structures/chimerax_sessionsandfigures/20190407_OpenClass1/FrontView.cxs"" opened ChimeraX session molmap #2 5 could not retrieve bundle list from toolshed vop subtract #1 #3 minrms t Unknown command: vop subtract #1 #3 minrms t vop subtract #1 #4 minrms t Unknown command: vop subtract #1 #4 minrms t vop subtract #1 #4 Unknown command: vop subtract #1 #4 toolshed show ""Density Map Toolbar"" vop subtract #1 #4 minrms Unknown command: vop subtract #1 #4 minrms Unknown command: vop subtract #1 #4 minrms vop subtract #1 #4 minrms Unknown command: vop subtract #1 #4 minrms Unknown command: vop subtract #1 #4 minrms OpenGL version: 4.5 (Core Profile) Mesa 18.0.5 OpenGL renderer: Mesa DRI Intel(R) HD Graphics 630 (Kaby Lake GT2) OpenGL vendor: Intel Open Source Technology Center }}} " defect closed normal Command Line fixed greg all ChimeraX