id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 18270 Crash on Mac waking from sleep karthik.srinivasan@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-14.7.1-arm64-arm-64bit ChimeraX Version: 1.10 (2025-06-26 08:57:52 UTC) Description Last time you used ChimeraX it crashed. This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX. 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] } } ===== Log before crash start ===== UCSF ChimeraX version: 1.10 (2025-06-26) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > /Users/karthik/Desktop/Stuff/UCSF/DARPA_Project/Alpha2a_zPZd_Manuscript/Figure_7/NURefineMap_Sharpened_Flipped_MOR.mrc Opened NURefineMap_Sharpened_Flipped_MOR.mrc as #1, grid size 360,360,360, pixel 0.819, shown at level 0.0567, step 2, values float32 > set bgColor white > volume #1 step 1 > volume #1 level 0.2175 > open > /Users/karthik/Desktop/Stuff/UCSF/DARPA_Project/Alpha2a_zPZd_Manuscript/Figure_7/LocalMap_J561_Sharp_Flip.mrc Opened LocalMap_J561_Sharp_Flip.mrc as #2, grid size 360,360,360, pixel 0.819, shown at level 0.0647, step 2, values float32 > volume #2 step 1 > volume #2 level 0.2391 > hide #!2 models > hide #!1 models > show #!2 models > open > /Users/karthik/Desktop/Stuff/UCSF/DARPA_Project/Alpha2a_zPZd_Manuscript/Figure_7/MOR_20250228_CombinedModel6_Refined.pdb Chain information for MOR_20250228_CombinedModel6_Refined.pdb #3 --- Chain | Description R | No description available > preset ""overall look"" ""publication 1 (silhouettes)"" Using preset: Overall Look / Publication 1 (Silhouettes) Preset expands to these ChimeraX commands: set bg white graphics silhouettes t lighting depthCue f > select add #2 2 models selected > ui tool show ""Color Actions"" > color sel hot pink > color sel orchid > color sel thistle > color sel violet > color sel plum > color sel light pink > color sel plum > surface dust #2 size 8.19 > ui mousemode right select > select clear > transparency #2-3 60 > volume #2 level 0.1724 > cartoon style helix width 1.2 thickness 0.3 > ui tool show ""Side View"" > select #2 3 models selected > select clear > hide #!2 models > select /R:126 17 atoms, 16 bonds, 1 residue, 1 model selected > select /A:1@C18 1 atom, 1 residue, 1 model selected > select /A:1@C08 1 atom, 1 residue, 1 model selected > select up 38 atoms, 40 bonds, 1 residue, 1 model selected > select up 4617 atoms, 4677 bonds, 287 residues, 1 model selected > select down 38 atoms, 40 bonds, 1 residue, 1 model selected > select ~sel & ##selected 4579 atoms, 4637 bonds, 286 residues, 1 model selected > select /A:1@C07 1 atom, 1 residue, 1 model selected > select up 38 atoms, 40 bonds, 1 residue, 1 model selected > select up 4617 atoms, 4677 bonds, 287 residues, 1 model selected > select down 38 atoms, 40 bonds, 1 residue, 1 model selected > ui tool show ""Color Actions"" > color sel sandy brown > color sel light salmon > color sel salmon > color sel byhetero > show #!2 models > lighting soft > ui mousemode right ""pick blobs"" > measure blob #!2.1 triangleNumber 26765 color #ce7dd6ff Surface LocalMap_J561_Sharp_Flip.mrc #2.1 blob: volume = 16132 area = 22495 size = 84.534 58.536 47.52 > volume #1 level 0.2794 > hide #!1 models > ui mousemode right ""contour level"" > transparency sel 60 > select add #2 38 atoms, 40 bonds, 1 residue, 5 models selected > select add #3 4617 atoms, 4677 bonds, 287 residues, 5 models selected > transparency (#3 & sel) 60 > close #1 > select subtract #3 4 models selected > hide #3 models > transparency #2.1 60 > show #3 models > volume #2 level 0.1768 > hide #!2 models > ui mousemode right select > select up 2 atoms, 1 bond, 1 residue, 1 model selected > select up 38 atoms, 40 bonds, 1 residue, 1 model selected > select up 4617 atoms, 4677 bonds, 287 residues, 1 model selected > select down 38 atoms, 40 bonds, 1 residue, 1 model selected > select ~sel & ##selected 4579 atoms, 4637 bonds, 286 residues, 1 model selected > select add #2 4579 atoms, 4637 bonds, 286 residues, 3 models selected > select add #3 4617 atoms, 4677 bonds, 287 residues, 3 models selected > select subtract #3 2 models selected > select subtract #2 Nothing selected > select add #3 4617 atoms, 4677 bonds, 287 residues, 1 model selected > ui tool show ""Color Actions"" > color sel salmon > color sel byhetero > select clear > select up 2 atoms, 1 bond, 1 residue, 1 model selected > select up 38 atoms, 40 bonds, 1 residue, 1 model selected > ui tool show ""Color Actions"" > color sel plum > color sel byhetero > show #!2 models > select add #3 4617 atoms, 4677 bonds, 287 residues, 1 model selected > select subtract #3 Nothing selected > select add #2 4 models selected > select /A:1@C07 1 atom, 1 residue, 1 model selected > select clear > select #2 4 models selected > ui tool show ""Scale Bar"" > ui tool show ""Volume Viewer"" > volume #2 level 0.2268 > volume #2 level 0.1768 > select #2 4 models selected > hide #3 models > ui tool show ""Color Actions"" > color sel salmon > show #3 models > select #2 4 models selected > select #2 4 models selected > select /A:1@CL14 1 atom, 1 residue, 1 model selected > select up 38 atoms, 40 bonds, 1 residue, 1 model selected > select up 4617 atoms, 4677 bonds, 287 residues, 1 model selected > select down 38 atoms, 40 bonds, 1 residue, 1 model selected > color zone #2 near sel & #3 distance 4.91 > undo > ui tool show ""Color Zone"" > color zone #2 near sel distance 0.87 > color zone #2 near sel distance 0.84 > color zone #2 near sel distance 1.03 > color zone #2 near sel distance 1 > color zone #2 near sel distance 1.7 > ui tool show ""Color Actions"" > color sel plum > color zone #2 near sel distance 1.7 > ui tool show ""Side View"" > color zone #2 near sel distance 1.62 > color zone #2 near sel distance 2.46 > color zone #2 near sel distance 2.49 > color zone #2 near sel distance 1.77 > ui tool show ""Measure and Color Blobs"" > measure blob #!2.1 triangleNumber 27487 outline true Surface LocalMap_J561_Sharp_Flip.mrc #2.1 blob: volume = 15706 area = 21938 size = 84.254 58.39 47.523 > transparency sel 60 > measure blob #!2.1 triangleNumber 15930 outline true Surface LocalMap_J561_Sharp_Flip.mrc #2.1 blob: volume = 15706 area = 21938 size = 84.254 58.39 47.523 > ui mousemode right select > select clear > select add #3 4617 atoms, 4677 bonds, 287 residues, 1 model selected > select subtract #3 Nothing selected > select add #2 6 models selected > transparency #2.1-3 60 > select #2 6 models selected > select clear > select #2 6 models selected > select clear > select /A:1@CL14 1 atom, 1 residue, 1 model selected > select up 38 atoms, 40 bonds, 1 residue, 1 model selected > select up 4617 atoms, 4677 bonds, 287 residues, 1 model selected > select down 38 atoms, 40 bonds, 1 residue, 1 model selected > color zone #2 near sel distance 1.7 > color zone #2 near sel distance 1.73 > color zone #2 near sel distance 1.34 > hide #3 models > show #3 models > open > /Users/karthik/Desktop/Stuff/UCSF/DARPA_Project/Alpha2a_zPZd_Manuscript/Figure_7/MOR_LocalMap_J561_Sharp_Flip_2.mrc Opened MOR_LocalMap_J561_Sharp_Flip_2.mrc as #1, grid size 360,360,360, pixel 0.819, shown at level 0.0647, step 2, values float32 > hide #!2 models > hide #3 models > hide #!1 models > show #3 models > show #!1 models > volume #1 step 1 > volume #1 level 0.187 > surface dust #1 size 8.19 > ui tool show ""Map Eraser"" > volume erase #1 center 174.3,150.4,154.6 radius 19.972 Opened MOR_LocalMap_J561_Sharp_Flip_2.mrc copy as #5, grid size 360,360,360, pixel 0.819, shown at step 1, values float32 > volume erase #5 center 159.53,137.63,151.16 radius 19.899 > volume erase #5 center 175.27,144.24,179.02 radius 57.782 > transparency sel 90 > hide #3 models > show #3 models > show #!1 models > hide #!1 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #3 models > show #3 models > hide #3 models > show #3 models > hide #!2 models > show #!2 models > show #!1 models > hide #!1 models > hide #!2 models > show #!2 models > hide #!2 models > select add #2 38 atoms, 40 bonds, 1 residue, 5 models selected > transparency (#3 & sel) 60 > select subtract #2 38 atoms, 40 bonds, 1 residue, 1 model selected > show #!2 models > hide #!2 models > show #!1 models > show #!2 models > hide #!1 models > hide #!5 models > show #!5 models > hide #4 models > hide #3 models > show #4 models > hide #!5 models > show #!5 models > show #!1 models > hide #!1 models > hide #4 models > hide #!2 models > hide #!5 models > show #!5 models > show #4 models > select add #5 38 atoms, 40 bonds, 1 residue, 3 models selected > transparency #5.1 90 > show #3 models > select add #3 4617 atoms, 4677 bonds, 287 residues, 3 models selected > select subtract #3 2 models selected > transparency #5.1 70 > ui mousemode right select > select clear Drag select of 3 residues, 5 MOR_LocalMap_J561_Sharp_Flip_2.mrc copy > select clear > ui mousemode right ""translate selected models"" > select add #4 1 model selected > view matrix models #4,1,0,0,172.71,0,1,0,135.77,0,0,1,166.9 > volume erase #5 center 172.71,135.77,166.9 radius 57.782 > view matrix models #4,1,0,0,152.22,0,1,0,145.89,0,0,1,136.95 > view matrix models #4,1,0,0,128.26,0,1,0,154.93,0,0,1,106.59 > view matrix models #4,1,0,0,106.92,0,1,0,165.12,0,0,1,75.985 > view matrix models #4,1,0,0,101.01,0,1,0,167.89,0,0,1,67.591 > volume erase #5 center 101.01,167.89,67.591 radius 57.782 > view matrix models #4,1,0,0,81.444,0,1,0,129.52,0,0,1,118.81 > view matrix models #4,1,0,0,100.09,0,1,0,127.68,0,0,1,133.8 > volume erase #5 center 100.09,127.68,133.8 radius 42.304 > view matrix models #4,1,0,0,122.02,0,1,0,106.33,0,0,1,117.42 > view matrix models #4,1,0,0,136.65,0,1,0,105.55,0,0,1,108.65 > view matrix models #4,1,0,0,137.2,0,1,0,106.22,0,0,1,108.43 > volume erase #5 center 137.2,106.22,108.43 radius 42.304 > view matrix models #4,1,0,0,152.69,0,1,0,108.07,0,0,1,99.572 > view matrix models #4,1,0,0,166.65,0,1,0,128.26,0,0,1,87.884 > view matrix models #4,1,0,0,167.82,0,1,0,132.35,0,0,1,87.668 > volume erase #5 center 167.82,132.35,87.668 radius 39.946 > view matrix models #4,1,0,0,167.07,0,1,0,188.77,0,0,1,103.57 > volume erase #5 center 167.07,188.77,103.57 radius 39.946 > view matrix models #4,1,0,0,128.05,0,1,0,181.72,0,0,1,146.19 > view matrix models #4,1,0,0,130.59,0,1,0,185.2,0,0,1,144.39 > view matrix models #4,1,0,0,130.35,0,1,0,184.19,0,0,1,142.15 > volume erase #5 center 130.35,184.19,142.15 radius 39.946 > hide #3 models > view matrix models #4,1,0,0,159.32,0,1,0,152.9,0,0,1,123.69 > view matrix models #4,1,0,0,148.27,0,1,0,157.94,0,0,1,122.98 > volume erase #5 center 148.27,157.94,122.98 radius 6.3383 > view matrix models #4,1,0,0,154.03,0,1,0,150.13,0,0,1,117.62 > volume erase #5 center 154.03,150.13,117.62 radius 6.3383 > view matrix models #4,1,0,0,132.59,0,1,0,145.8,0,0,1,106.41 > view matrix models #4,1,0,0,130.8,0,1,0,158.01,0,0,1,112.9 > volume erase #5 center 130.8,158.01,112.9 radius 6.3383 > view matrix models #4,1,0,0,127.38,0,1,0,145.38,0,0,1,113.48 > volume erase #5 center 127.38,145.38,113.48 radius 6.3383 > view matrix models #4,1,0,0,137.32,0,1,0,142.36,0,0,1,115.42 > view matrix models #4,1,0,0,139.27,0,1,0,148.54,0,0,1,125.57 > view matrix models #4,1,0,0,138.53,0,1,0,148.88,0,0,1,125.44 > volume erase #5 center 138.53,148.88,125.44 radius 6.3383 > view matrix models #4,1,0,0,134.97,0,1,0,147.85,0,0,1,124.78 > volume erase #5 center 134.97,147.85,124.78 radius 6.3383 > view matrix models #4,1,0,0,137.36,0,1,0,143.22,0,0,1,121.71 > volume erase #5 center 137.36,143.22,121.71 radius 6.3383 > view matrix models #4,1,0,0,134.37,0,1,0,157.94,0,0,1,119.77 > view matrix models #4,1,0,0,128.02,0,1,0,154.91,0,0,1,120.75 > volume erase #5 center 128.02,154.91,120.75 radius 6.3383 > view matrix models #4,1,0,0,124.22,0,1,0,157.49,0,0,1,121.3 > volume erase #5 center 124.22,157.49,121.3 radius 6.3383 > view matrix models #4,1,0,0,137.48,0,1,0,160.91,0,0,1,112.41 > volume erase #5 center 137.48,160.91,112.41 radius 6.3383 > view matrix models #4,1,0,0,138.7,0,1,0,160.15,0,0,1,113.51 > volume erase #5 center 138.7,160.15,113.51 radius 6.3383 > view matrix models #4,1,0,0,140.06,0,1,0,155.54,0,0,1,109.08 > volume erase #5 center 140.06,155.54,109.08 radius 6.3383 > view matrix models #4,1,0,0,141.48,0,1,0,149.57,0,0,1,114.47 > view matrix models #4,1,0,0,142.45,0,1,0,150.66,0,0,1,116.5 > view matrix models #4,1,0,0,141.56,0,1,0,150.57,0,0,1,116.02 > view matrix models #4,1,0,0,141.86,0,1,0,150.58,0,0,1,116.16 > volume erase #5 center 141.86,150.58,116.16 radius 8.2545 outside true > hide #!5 models > hide #4 models > show #4 models > show #3 models > select subtract #4 Nothing selected > show #!2 models > hide #3 models > ui tool show ""Map Eraser"" > ui mousemode right select > ui mousemode right ""translate selected models"" > select add #4 1 model selected > view matrix models #4,1,0,0,139.72,0,1,0,150.43,0,0,1,116.65 > volume erase #2 center 139.72,150.43,116.65 radius 2.0636 Opened LocalMap_J561_Sharp_Flip.mrc copy as #6, grid size 360,360,360, pixel 0.819, shown at step 1, values float32 > view matrix models #4,1,0,0,137.12,0,1,0,150.45,0,0,1,117.42 > volume erase #6 center 137.12,150.45,117.42 radius 2.0636 > view matrix models #4,1,0,0,135.14,0,1,0,150.25,0,0,1,116.99 > volume erase #6 center 135.14,150.25,116.99 radius 2.0636 > show #!5 models > hide #!5 models > view matrix models #4,1,0,0,139.35,0,1,0,151.88,0,0,1,116.29 > view matrix models #4,1,0,0,141.33,0,1,0,152.13,0,0,1,115.86 > view matrix models #4,1,0,0,141.47,0,1,0,151.64,0,0,1,115.92 > view matrix models #4,1,0,0,142.54,0,1,0,152.75,0,0,1,117.15 > view matrix models #4,1,0,0,142.67,0,1,0,152.15,0,0,1,117.12 > volume erase #6 center 142.67,152.15,117.12 radius 2.0636 > view matrix models #4,1,0,0,143.5,0,1,0,151.98,0,0,1,117.35 > volume erase #6 center 143.5,151.98,117.35 radius 2.0636 > view matrix models #4,1,0,0,144.85,0,1,0,151.93,0,0,1,116.44 > view matrix models #4,1,0,0,144.89,0,1,0,152.29,0,0,1,116.75 > volume erase #6 center 144.89,152.29,116.75 radius 2.0636 > view matrix models #4,1,0,0,146.31,0,1,0,152.95,0,0,1,115.64 > volume erase #6 center 146.31,152.95,115.64 radius 2.0636 > show #!5 models > select subtract #4 Nothing selected > close #4 > show #3 models > hide #!5 models > hide #3 models > surface dust #6 size 8.19 > show #!5 models > show #3 models > select add #3 4617 atoms, 4677 bonds, 287 residues, 1 model selected > select subtract #3 Nothing selected > ui mousemode right select > select /A:1@N10 1 atom, 1 residue, 1 model selected > select up 2 atoms, 1 bond, 1 residue, 1 model selected > select up 38 atoms, 40 bonds, 1 residue, 1 model selected > select up 4617 atoms, 4677 bonds, 287 residues, 1 model selected > select down 38 atoms, 40 bonds, 1 residue, 1 model selected > color sel byhetero > select down 2 atoms, 1 bond, 1 residue, 1 model selected > select down 1 bond, 1 model selected > select up 2 atoms, 1 bond, 1 residue, 1 model selected > select down 1 bond, 1 model selected > select clear > view > select add #6 3 models selected > ui tool show ""Color Actions"" > color sel plum > color sel mint cream > color sel linen > select clear > select #5 3 models selected > select clear > select /A:1@C15 1 atom, 1 residue, 1 model selected > select up 38 atoms, 40 bonds, 1 residue, 1 model selected > select up 4617 atoms, 4677 bonds, 287 residues, 1 model selected > select down 38 atoms, 40 bonds, 1 residue, 1 model selected > select down 1 atom, 1 residue, 1 model selected > select up 38 atoms, 40 bonds, 1 residue, 1 model selected > style sel ball Changed 38 atom styles > select ~sel & ##selected 4579 atoms, 4637 bonds, 286 residues, 1 model selected > ui tool show ""Color Actions"" > color sel salmon > color sel byhetero > select /A:1@C12 1 atom, 1 residue, 1 model selected > select up 38 atoms, 40 bonds, 1 residue, 1 model selected > select up 4617 atoms, 4677 bonds, 287 residues, 1 model selected > select down 38 atoms, 40 bonds, 1 residue, 1 model selected > ui tool show ""Color Actions"" > color sel salmon > color sel byhetero > select ~sel & ##selected 4579 atoms, 4637 bonds, 286 residues, 1 model selected > color sel light salmon > color sel sandy brown > select clear > select /A:1@CL14 1 atom, 1 residue, 1 model selected > select up 38 atoms, 40 bonds, 1 residue, 1 model selected > select up 4617 atoms, 4677 bonds, 287 residues, 1 model selected > select down 38 atoms, 40 bonds, 1 residue, 1 model selected > select ~sel & ##selected 4579 atoms, 4637 bonds, 286 residues, 1 model selected > color sel byhetero > select #6 4 models selected > select clear > select #6 4 models selected > select #6 4 models selected > hide #!6 models > hide #3 models > hide #!5 models > show #3 models > select /R:149 12 atoms, 11 bonds, 1 residue, 1 model selected > show #!6 models > show #!5 models > ui tool show ""Color Actions"" > color sel gold > color sel byhetero > undo > select /R:149@OD2 1 atom, 1 residue, 1 model selected > select up 12 atoms, 11 bonds, 1 residue, 1 model selected > select down 1 atom, 1 residue, 1 model selected > select down 1 atom, 1 residue, 1 model selected > hide #3 models > hide #!6 models > show #3 models > hide #!5 models > select up 2 atoms, 1 bond, 1 residue, 1 model selected > select down 1 bond, 1 model selected > select add /R:149@CB 1 atom, 2 bonds, 1 residue, 1 model selected > select subtract /R:149 Nothing selected > select add /R:149@CG 1 atom, 2 bonds, 1 residue, 1 model selected > select /R:151 21 atoms, 21 bonds, 1 residue, 1 model selected > ui tool show ""Color Actions"" > color sel yellow > undo > select clear > color sel yellow > undo > select /R:149@OD2 1 atom, 1 residue, 1 model selected > hide sel cartoons > show sel cartoons > hide sel target b > show sel target ab > color sel dim gray > undo > color yellow sel Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels', 'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword > color sel byatom yellow Expected a collection of one of 'All', 'atoms', 'bonds', 'cartoons', 'labels', 'models', 'pseudobonds', 'ribbons', 'rings', or 'surfaces' or a keyword > color sel yellow atoms > select clear > select /R:149@CG 1 atom, 1 residue, 1 model selected > color sel yellow atoms > show #!5 models > show #!6 models > hide #!6 models > hide #!5 models > select /R:149 12 atoms, 11 bonds, 1 residue, 1 model selected > color sel cyan > undo ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.10 (2025-06-26) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 88.1 OpenGL renderer: Apple M2 OpenGL vendor: Apple Python: 3.11.4 Locale: UTF-8 Qt version: PyQt6 6.8.1, Qt 6.8.2 Qt runtime version: 6.8.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: Mac14,7 Model Number: Z16R0005ULL/A Chip: Apple M2 Total Number of Cores: 8 (4 performance and 4 efficiency) Memory: 16 GB System Firmware Version: 11881.41.5 OS Loader Version: 10151.140.19.700.2 Software: System Software Overview: System Version: macOS 14.7.1 (23H222) Kernel Version: Darwin 23.6.0 Time since boot: 30 days, 1 hour, 33 minutes Graphics/Displays: Apple M2: Chipset Model: Apple M2 Type: GPU Bus: Built-In Total Number of Cores: 10 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal Installed Packages: alabaster: 1.0.0 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.0 auditwheel: 6.4.0 babel: 2.17.0 beautifulsoup4: 4.13.3 blockdiag: 3.0.0 blosc2: 3.5.0 build: 1.2.2.post1 certifi: 2023.11.17 cftime: 1.6.4.post1 charset-normalizer: 3.4.2 ChimeraX-AddCharge: 1.5.19 ChimeraX-AddH: 2.2.7 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.20.2 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Aniso: 1.1.4 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.60.7 ChimeraX-AtomicLibrary: 14.1.18 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.0 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.5.1 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.3 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.10 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.4 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.1 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.3 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.6.2 ChimeraX-Label: 1.1.14 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.2.2 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.10.1 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.19 ChimeraX-ModelPanel: 1.5.1 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.14.1 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.10 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.3 ChimeraX-ProfileGrids: 1.1.2 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.3 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.7 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.17.1 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.45.2 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.3.2 coverage: 7.9.1 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.0.12 debugpy: 1.8.14 decorator: 5.2.1 docutils: 0.21.2 executing: 2.2.0 filelock: 3.18.0 fonttools: 4.58.4 funcparserlib: 2.0.0a0 glfw: 2.9.0 grako: 3.16.5 h5py: 3.14.0 html2text: 2024.2.26 idna: 3.10 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 1.4.1 iniconfig: 2.1.0 ipykernel: 6.29.5 ipython: 8.26.0 ipywidgets: 8.1.7 jedi: 0.19.1 Jinja2: 3.1.6 jupyter_client: 8.6.3 jupyter_core: 5.8.1 jupyterlab_widgets: 3.0.15 kiwisolver: 1.4.8 line_profiler: 4.2.0 lxml: 5.3.1 lz4: 4.4.4 MarkupSafe: 3.0.2 matplotlib: 3.10.1 matplotlib-inline: 0.1.7 msgpack: 1.1.0 ndindex: 1.10.0 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.11.0 numpy: 1.26.4 OpenMM: 8.2.0 openvr: 1.26.701 packaging: 24.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 10.4.0 pip: 25.0.1 pkginfo: 1.11.1 platformdirs: 4.3.8 pluggy: 1.6.0 prompt_toolkit: 3.0.51 psutil: 7.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 pyelftools: 0.32 Pygments: 2.18.0 pynmrstar: 3.3.5 pynrrd: 1.0.0 PyOpenGL: 3.1.9 PyOpenGL-accelerate: 3.1.9 pyopenxr: 1.1.4501 pyparsing: 3.2.3 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.8.1 PyQt6-Qt6: 6.8.2 PyQt6-WebEngine-commercial: 6.8.0 PyQt6-WebEngine-Qt6: 6.8.2 PyQt6_sip: 13.10.0 pytest: 8.4.1 pytest-cov: 6.2.1 python-dateutil: 2.9.0.post0 pytz: 2025.2 pyzmq: 27.0.0 qtconsole: 5.5.2 QtPy: 2.4.3 qtshim: 1.1 RandomWords: 0.4.0 requests: 2.32.3 roman-numerals-py: 3.1.0 scipy: 1.14.0 setuptools: 78.1.0 sfftk-rw: 0.8.1 six: 1.16.0 snowballstemmer: 3.0.1 sortedcontainers: 2.4.0 soupsieve: 2.7 Sphinx: 8.2.3 sphinx-autodoc-typehints: 3.1.0 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 stack-data: 0.6.3 superqt: 0.7.1 tables: 3.10.2 tcia_utils: 1.5.1 tifffile: 2025.3.13 tinyarray: 1.2.4 tornado: 6.5.1 traitlets: 5.14.3 typing_extensions: 4.14.0 tzdata: 2025.2 urllib3: 2.5.0 wcwidth: 0.2.13 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 widgetsnbextension: 4.0.14 }}} " defect closed normal Window Toolkit duplicate all ChimeraX