id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 18132 Crash on Mac waking from sleep chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-15.5-arm64-arm-64bit ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC) Description Last time you used ChimeraX it crashed. This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX. 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32K 1 \nMALLOC 7.5G 181 \nMALLOC guard page 288K 18 \nMach message 64K 2 \nOpenGL GLSL 384K 4 \nSTACK GUARD 56.8M 52 \nStack 199.7M 52 \nVM_ALLOCATE 630.4M 284 \nVM_ALLOCATE (reserved) 576.0M 8 reserved VM address space (unallocated)\n__AUTH 5521K 697 \n__AUTH_CONST 77.4M 944 \n__CTF 824 1 \n__DATA 36.6M 1157 \n__DATA_CONST 38.0M 1167 \n__DATA_DIRTY 2778K 342 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__INFO_FILTER 8 1 \n__LINKEDIT 654.0M 218 \n__OBJC_RO 61.4M 1 \n__OBJC_RW 2396K 1 \n__TEXT 1.3G 1188 \n__TPRO_CONST 128K 2 \ndyld private memory 10.4M 85 \nmapped file 317.6M 76 \npage table in kernel 4770K 1 \nshared memory 3168K 24 \n=========== ======= ======= \nTOTAL 11.5G 6802 \nTOTAL, minus reserved VM space 10.9G 6802 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""logWritingSignature"" : ""c6fa742e92c9422c8ba77390c157418c29e1ebc8"", ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""644114de41e7236e6177f9bd"", ""factorPackIds"" : { }, ""deploymentId"" : 240000013 }, { ""rolloutId"" : ""670e9bd77a111748a97092a1"", ""factorPackIds"" : { ""SIRI_TTS_DEVICE_TRAINING"" : ""67d07fb744f1a3655d87002b"" }, ""deploymentId"" : 240000016 } ], ""experiments"" : [ ] } } ===== Log before crash start ===== Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.9 (2024-12-11) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/uqnnewt1/Dropbox/1. Work/1. Chimera > Sessions/POWV/newPOWV_lipid_v2.cxs"" Opened POWV_sharp1.mrc as #2, grid size 300,300,300, pixel 0.82, shown at level 2.51, step 1, values float32 Opened POWV_sharp1.mrc zone as #4, grid size 300,300,300, pixel 0.82, shown at level 1.21, step 1, values float32 Opened POWV_sharp1.mrc zone as #6, grid size 300,300,300, pixel 0.82, shown at level 2.02, step 1, values float32 Opened bPOWV_volume_54_1.mrc as #7, grid size 800,800,800, pixel 0.82, shown at level 1.55, step 1, values float32 Opened POWV_sharp1.mrc zone as #8, grid size 300,300,300, pixel 0.82, shown at level 1.83, step 1, values float32 Opened POWV_sharp1.mrc zone as #9, grid size 300,300,300, pixel 0.82, shown at level 2.51, step 1, values float32 Opened POWV_sharp1.mrc zone zone as #10, grid size 300,300,300, pixel 0.82, shown at level 1.88, step 1, values float32 Opened POWV_sharp1.mrc zone as #11, grid size 300,300,300, pixel 0.82, shown at level 1.99, step 1, values float32 Opened POWV_sharp1.mrc zone zone as #12, grid size 300,300,300, pixel 0.82, shown at level 1.65, step 1, values float32 Opened POWV_sharp1.mrc zone zone zone as #13, grid size 300,300,300, pixel 0.82, shown at level 1.68, step 1, values float32 Opened POWV_sharp1.mrc zone as #15, grid size 300,300,300, pixel 0.82, shown at level 2.51, step 1, values float32 Opened POWV_sharp1.mrc zone zone as #16, grid size 300,300,300, pixel 0.82, shown at level 1.66, step 1, values float32 opened ChimeraX session > ui tool show ""Map Eraser"" > volume erase #16 center 130.57,134.56,134.03 radius 24.265 outside true > ui mousemode right translate > volume #16 level 1.516 > save newPOWV_lipid3.png format png width 2000 height 2000 > transparentBackground true > save ""/Users/uqnnewt1/Dropbox/1. Work/1. Chimera > Sessions/POWV/newPOWV_lipid_v3.cxs"" includeMaps true > close #1,3,5,14,17#2,4,6-13,15-16 > open ""/Users/uqnnewt1/Dropbox/1. Work/1. Chimera > Sessions/POWV/newPOWV_asu.cxs"" format session Opened POWV_sharp1.mrc as #2, grid size 300,300,300, pixel 0.82, shown at level 2.51, step 1, values float32 Opened POWV_sharp1.mrc zone as #4, grid size 300,300,300, pixel 0.82, shown at level 1.21, step 1, values float32 Opened POWV_sharp1.mrc zone as #6, grid size 300,300,300, pixel 0.82, shown at level 2.02, step 1, values float32 Opened bPOWV_volume_54_1.mrc as #7, grid size 800,800,800, pixel 0.82, shown at level 1.55, step 1, values float32 opened ChimeraX session > ui tool show ""Map Filter"" > volume gaussian #6 sDev 0.44 Opened POWV_sharp1.mrc zone gaussian as #8, grid size 300,300,300, pixel 0.82, shown at step 1, values float32 > volume gaussian #6 sDev 0.83 modelId #8 Opened POWV_sharp1.mrc zone gaussian as #8, grid size 300,300,300, pixel 0.82, shown at step 1, values float32 > close #8 > show #!6 models > toolshed show > show #5 models > transparency #6.1 50 > show :154 > style #5 stick Changed 26361 atom styles > ui tool show ""Map Eraser"" > volume erase #6 center 142.51,136.93,107.35 radius 15.914 outside true > ui mousemode right translate > ui tool show ""Side View"" > transparency #6.1 50 > color zone #6 near #5 distance 4 > transparency #6.1 50 > show #!2 models > hide #!6 models > volume #2 level 2.305 > surface dust #2 size 3 > color zone #2 near #5 distance 4 > transparency #2.1 50 > volume #2 level 1.842 > volume #2 level 2.016 > color zone #2 near #5 distance 4 > transparency #2.1 50 > save newPOWV_glycan.png format png width 2000 height 2000 > transparentBackground true > save newPOWV_glycan2.png format png width 2000 height 2000 > transparentBackground true > save ""/Users/uqnnewt1/Dropbox/1. Work/1. Chimera > Sessions/POWV/newPOWV_glycan.cxs"" includeMaps true > show #!6 models > hide #!2 models > close #1,3,5#2,4,6-7 > open ""/Users/uqnnewt1/Dropbox/1. Work/1. Chimera > Sessions/POWV/newPOWV_asu.cxs"" format session Opened POWV_sharp1.mrc as #2, grid size 300,300,300, pixel 0.82, shown at level 2.51, step 1, values float32 Opened POWV_sharp1.mrc zone as #4, grid size 300,300,300, pixel 0.82, shown at level 1.21, step 1, values float32 Opened POWV_sharp1.mrc zone as #6, grid size 300,300,300, pixel 0.82, shown at level 2.02, step 1, values float32 Opened bPOWV_volume_54_1.mrc as #7, grid size 800,800,800, pixel 0.82, shown at level 1.55, step 1, values float32 opened ChimeraX session > show #5 models > volume #6 level 1.763 > show #3 models > hide #3 models > show #!4 models > hide #!4 models > show #!4 models > hide #!4 models > hide #5 models > show #5 models > hide #!6 models > hide #5 models > show #!6 models > show #5 models > color zone #6 near #5 distance 4 > show #5 atoms > style #5 stick Changed 26361 atom styles > transparency #6.1 50 > ui tool show ""Side View"" > view > nucleotides #5 fill > style nucleic & #5 stick Changed 0 atom styles > nucleotides #5 fill > style nucleic & #5 stick Changed 0 atom styles > nucleotides #5 fill > style nucleic & #5 stick Changed 0 atom styles > nucleotides #5 tube/slab shape box > select add #5 26361 atoms, 26676 bonds, 1719 residues, 1 model selected > nucleotides sel tube/slab shape box > nucleotides sel ladder > select subtract #5 Nothing selected > nucleotides #5 ladder > nucleotides #5 atoms > style nucleic & #5 stick Changed 0 atom styles > select add #5 26361 atoms, 26676 bonds, 1719 residues, 1 model selected > nucleotides sel atoms > style nucleic & sel stick Changed 0 atom styles > nucleotides sel fill > style nucleic & sel stick Changed 0 atom styles > nucleotides sel fill > style nucleic & sel stick Changed 0 atom styles > nucleotides sel atoms > style nucleic & sel stick Changed 0 atom styles > cartoon style sel xsection oval modeHelix default > hide #!6 models > select subtract #5 Nothing selected > style #5 ball Changed 26361 atom styles > style #5 stick Changed 26361 atom styles > cartoon style (#5 & coil) xsection oval > cartoon style #5 xsection barbell modeHelix default > cartoon style #5 modeHelix tube sides 20 > undo > preset cartoons/nucleotides licorice/ovals Using preset: Cartoons/Nucleotides / Licorice/Ovals Changed 12893 atom styles Preset expands to these ChimeraX commands: show nucleic hide protein|solvent|H surf hide style (protein|nucleic|solvent) & @@draw_mode=0 stick ~worm cartoon cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 cartoon style ~(nucleic|strand) x round cartoon style (nucleic|strand) x rect cartoon style protein modeh default arrows f x round width 1 thick 1 cartoon style nucleic x round width 1.6 thick 1.6 nucleotides tube/slab shape ellipsoid > preset cartoons/nucleotides cylinders/stubs Using preset: Cartoons/Nucleotides / Cylinders/Stubs Changed 0 atom styles Preset expands to these ChimeraX commands: show nucleic hide protein|solvent|H surf hide style (protein|nucleic|solvent) & @@draw_mode=0 stick ~worm cartoon cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 cartoon style ~(nucleic|strand) x round cartoon style (nucleic|strand) x rect cartoon style protein modeh tube rad 2 sides 24 thick 0.6 cartoon style nucleic x round width 1.6 thick 1.6 nucleotides stubs > preset cartoons/nucleotides ribbons/slabs Using preset: Cartoons/Nucleotides / Ribbons/Slabs Changed 0 atom styles Preset expands to these ChimeraX commands: show nucleic hide protein|solvent|H surf hide style (protein|nucleic|solvent) & @@draw_mode=0 stick ~worm cartoon cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 cartoon style ~(nucleic|strand) x round cartoon style (nucleic|strand) x rect nucleotides tube/slab shape box > preset ""initial styles"" sticks Using preset: Initial Styles / Sticks Preset implemented in Python; no expansion to individual ChimeraX commands available. > preset ""initial styles"" ""space-filling (chain colors)"" Using preset: Initial Styles / Space-Filling (Chain Colors) Preset implemented in Python; no expansion to individual ChimeraX commands available. > preset ""initial styles"" sticks Using preset: Initial Styles / Sticks Preset implemented in Python; no expansion to individual ChimeraX commands available. > preset ""initial styles"" ""space-filling (single color)"" Using preset: Initial Styles / Space-Filling (Single Color) Preset implemented in Python; no expansion to individual ChimeraX commands available. > preset ""initial styles"" ""original look"" Using preset: Initial Styles / Original Look Preset implemented in Python; no expansion to individual ChimeraX commands available. > preset cartoons/nucleotides ribbons/slabs Using preset: Cartoons/Nucleotides / Ribbons/Slabs Changed 52063 atom styles Preset expands to these ChimeraX commands: show nucleic hide protein|solvent|H surf hide style (protein|nucleic|solvent) & @@draw_mode=0 stick ~worm cartoon cartoon style modeh def arrows t arrowshelix f arrowscale 2 wid 2 thick 0.4 sides 12 div 20 cartoon style ~(nucleic|strand) x round cartoon style (nucleic|strand) x rect nucleotides tube/slab shape box > close #1,3,5#2,4,6-7 > open ""/Users/uqnnewt1/Dropbox/1. Work/1. Chimera > Sessions/POWV/newPOWV_asu.cxs"" format session Opened POWV_sharp1.mrc as #2, grid size 300,300,300, pixel 0.82, shown at level 2.51, step 1, values float32 Opened POWV_sharp1.mrc zone as #4, grid size 300,300,300, pixel 0.82, shown at level 1.21, step 1, values float32 Opened POWV_sharp1.mrc zone as #6, grid size 300,300,300, pixel 0.82, shown at level 2.02, step 1, values float32 Opened bPOWV_volume_54_1.mrc as #7, grid size 800,800,800, pixel 0.82, shown at level 1.55, step 1, values float32 opened ChimeraX session > show #5 models > preset ""overall look"" ""publication 1 (silhouettes)"" Using preset: Overall Look / Publication 1 (Silhouettes) Preset expands to these ChimeraX commands: set bg white graphics silhouettes t lighting depthCue f > undo > preset ""initial styles"" cartoon Using preset: Initial Styles / Cartoon Preset implemented in Python; no expansion to individual ChimeraX commands available. > hide #!6 models > hide #5 models > show #5 models > preset ""initial styles"" ""space-filling (chain colors)"" Using preset: Initial Styles / Space-Filling (Chain Colors) Preset implemented in Python; no expansion to individual ChimeraX commands available. > preset ""initial styles"" sticks Using preset: Initial Styles / Sticks Preset implemented in Python; no expansion to individual ChimeraX commands available. > color #5/A medium purple > color #5/a #e5daffff > color #5/B teal > color #5/B pale turquoise > color #5/b pale turquoise > color #5/B teal > color #5/C tomato > color #5/c light salmon > color bfactor #5 26361 atoms, 1719 residues, atom bfactor range 41.1 to 151 > undo > color #5 byhetero > show #!6 models > transparency #6.1 50 > view > save ""/Users/uqnnewt1/Dropbox/1. Work/1. Chimera > Sessions/POWV/newPOWV_asu_v3.cxs"" includeMaps true > hide #!6 models > show #!6 models > ui tool show ""Map Eraser"" > volume erase #6 center 99.768,157.06,123.96 radius 21.653 outside true > ui mousemode right translate > volume #7 level 1.442 > show #!7 models > hide #!7 models > volume #6 level 1.725 > color zone #6 near #5 distance 4 > color #5 byhetero > color #5/b pale turquoise > color #5/B teal > color zone #6 near #5 distance 4 > transparency #6.1 50 > color #5 byhetero > view > delete #5/A,C,c,a > delete #5/B > view > ui mousemode right ""map eraser"" > volume erase #6 center 110.29,156.64,133.97 radius 7.5021 > volume erase #6 center 108.41,155.02,138.22 radius 7.5021 > volume erase #6 center 115.23,161.15,133.48 radius 4.5504 > volume erase #6 center 120.98,157.11,131.37 radius 6.3952 > volume zone #2 nearAtoms #5/b range 4 newMap true Opened POWV_sharp1.mrc zone as #9, grid size 300,300,300, pixel 0.82, shown at step 1, values float32 > volume zone #2 nearAtoms #5/b range 3 newMap true Opened POWV_sharp1.mrc zone as #10, grid size 300,300,300, pixel 0.82, shown at step 1, values float32 > hide #!6 models > volume zone #2 nearAtoms #5/b range 4 newMap true Opened POWV_sharp1.mrc zone as #11, grid size 300,300,300, pixel 0.82, shown at step 1, values float32 > hide #!9 models > hide #!10 models > hide #!11 models > show #!11 models > volume #11 level 1.849 > ui mousemode right translate > show #!9 models > hide #!11 models > volume #9 level 2.872 > volume #10 level 1.497 > hide #!9 models > surface dust #10 size 3 > color #10 pale turquoise > transparency #10.1 50 > volume #10 level 1.609 > ui mousemode right rotate > ui mousemode right translate > view > select H 614 atoms, 75 residues, 1 model selected > hide sel > volume #10 level 1.362 > ui mousemode right ""map eraser"" > ui mousemode right translate > ui mousemode right ""map eraser"" > volume erase #10 center 103.37,160.84,106.95 radius 2.7057 > ui mousemode right zoom > ui mousemode right translate > view Alignment identifier is 5/b > select #5/b:1 13 atoms, 12 bonds, 1 residue, 1 model selected > select #5/b:1-18 268 atoms, 270 bonds, 18 residues, 1 model selected > select #5/b:57 24 atoms, 25 bonds, 1 residue, 1 model selected > select #5/b:57-71 244 atoms, 245 bonds, 15 residues, 1 model selected > select add #5 1204 atoms, 1219 bonds, 75 residues, 1 model selected > select subtract #5 Nothing selected > toolshed show > save ""/Users/uqnnewt1/Dropbox/1. Work/1. Chimera > Sessions/POWV/newPOWV_M_feature.cxs"" includeMaps true ===== Log before crash end ===== Log: Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.9 (2024-12-11) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 89.4 OpenGL renderer: Apple M3 Pro OpenGL vendor: Apple Python: 3.11.4 Locale: en_US.UTF-8 Qt version: PyQt6 6.7.1, Qt 6.7.1 Qt runtime version: 6.7.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: Mac15,6 Model Number: MRX33X/A Chip: Apple M3 Pro Total Number of Cores: 11 (5 performance and 6 efficiency) Memory: 18 GB System Firmware Version: 11881.121.1 OS Loader Version: 11881.121.1 Software: System Software Overview: System Version: macOS 15.5 (24F74) Kernel Version: Darwin 24.5.0 Time since boot: 10 days, 23 hours, 49 minutes Graphics/Displays: Apple M3 Pro: Chipset Model: Apple M3 Pro Type: GPU Bus: Built-In Total Number of Cores: 14 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: DELL P3424WE: Resolution: 3440 x 1440 (UWQHD - Ultra-Wide Quad HD) UI Looks like: 3440 x 1440 @ 60.00Hz Main Display: Yes Mirror: Off Online: Yes Rotation: Supported DELL P2422H: Resolution: 1080 x 1920 UI Looks like: 1080 x 1920 @ 60.00Hz Mirror: Off Online: Yes Rotation: 270 Installed Packages: alabaster: 1.0.0 anyio: 4.7.0 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.0 auditwheel: 6.1.0 babel: 2.16.0 beautifulsoup4: 4.12.3 blockdiag: 3.0.0 blosc2: 3.0.0 build: 1.2.1 certifi: 2023.11.17 cftime: 1.6.4.post1 charset-normalizer: 3.4.0 ChimeraX-AddCharge: 1.5.18 ChimeraX-AddH: 2.2.6 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.5 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.16.1 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.58.8 ChimeraX-AtomicLibrary: 14.1.11 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.4.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.4 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.6 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.9 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.4 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2.6 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.3 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.2.1 ChimeraX-Label: 1.1.14 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.6 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.7.2 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.14.2 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.18 ChimeraX-ModelPanel: 1.5 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.14 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.6 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.2 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.2 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.6 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.14 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.0 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.18.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.41 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.4 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.3.1 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.0.10 debugpy: 1.8.9 decorator: 5.1.1 docutils: 0.21.2 executing: 2.1.0 filelock: 3.15.4 fonttools: 4.55.3 funcparserlib: 2.0.0a0 glfw: 2.8.0 grako: 3.16.5 h11: 0.14.0 h5py: 3.12.1 html2text: 2024.2.26 httpcore: 1.0.7 httpx: 0.28.1 idna: 3.10 ihm: 1.3 imagecodecs: 2024.6.1 imagesize: 1.4.1 ipykernel: 6.29.5 ipython: 8.26.0 ipywidgets: 8.1.5 jedi: 0.19.1 Jinja2: 3.1.4 jupyter_client: 8.6.2 jupyter_core: 5.7.2 jupyterlab_widgets: 3.0.13 kiwisolver: 1.4.7 line_profiler: 4.1.3 lxml: 5.2.2 lz4: 4.3.3 MarkupSafe: 3.0.2 matplotlib: 3.9.2 matplotlib-inline: 0.1.7 msgpack: 1.0.8 ndindex: 1.9.2 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.10.2 numpy: 1.26.4 openvr: 1.26.701 packaging: 23.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pexpect: 4.9.0 pillow: 10.4.0 pip: 24.2 pkginfo: 1.11.1 platformdirs: 4.3.6 prompt_toolkit: 3.0.48 psutil: 6.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 pyelftools: 0.31 Pygments: 2.18.0 pynmrstar: 3.3.4 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.3401 pyparsing: 3.2.0 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.7.1 PyQt6-Qt6: 6.7.3 PyQt6-WebEngine-commercial: 6.7.0 PyQt6-WebEngine-Qt6: 6.7.3 PyQt6-WebEngineSubwheel-Qt6: 6.7.3 PyQt6_sip: 13.8.0 python-dateutil: 2.9.0.post0 pytz: 2024.2 pyzmq: 26.2.0 qtconsole: 5.5.2 QtPy: 2.4.2 qtshim: 1.0 RandomWords: 0.4.0 requests: 2.32.3 scipy: 1.14.0 setuptools: 72.1.0 sfftk-rw: 0.8.1 six: 1.16.0 sniffio: 1.3.1 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.6 Sphinx: 8.0.2 sphinx-autodoc-typehints: 2.2.3 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 stack-data: 0.6.3 superqt: 0.6.3 tables: 3.10.1 tcia_utils: 1.5.1 tifffile: 2024.7.24 tinyarray: 1.2.4 tornado: 6.4.2 traitlets: 5.14.3 typing_extensions: 4.12.2 tzdata: 2024.2 urllib3: 2.2.3 wcwidth: 0.2.13 webcolors: 24.6.0 wheel: 0.43.0 wheel-filename: 1.4.1 widgetsnbextension: 4.0.13 }}} " defect closed normal Window Toolkit duplicate all ChimeraX