id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 18028 Crash on Mac waking from sleep chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-15.5-arm64-arm-64bit ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC) Description Last time you used ChimeraX it crashed. This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX. 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240000025 } ], ""experiments"" : [ { ""treatmentId"" : ""d5322b03-2bc4-481a-817e-3640bda0eeee"", ""experimentId"" : ""67f4692f84eaf455d73c6090"", ""deploymentId"" : 400000001 }, { ""treatmentId"" : ""f18344bb-554f-48ae-8449-e108a8813a55"", ""experimentId"" : ""6685b5584477001000e8c6c9"", ""deploymentId"" : 400000009 } ] } } ===== Log before crash start ===== Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.9 (2024-12-11) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > /Users/yoojoong/Library/CloudStorage/Dropbox/1_RothLab/Experiments/Projects/Tas2Rs/TAS2R14/2025/Prog- > TAS2R14/Structure_work/WorkingMaps/cryosparc_P18_J648_004_volume_map_sharp.mrc Opened cryosparc_P18_J648_004_volume_map_sharp.mrc as #1, grid size 320,320,320, pixel 0.874, shown at level 0.0251, step 2, values float32 > open > /Users/yoojoong/Library/CloudStorage/Dropbox/1_RothLab/Experiments/Projects/Tas2Rs/TAS2R14/2025/Prog- > TAS2R14/Structure_work/WorkingMaps/cryosparc_P18_J649_005_volume_map_sharp.mrc Opened cryosparc_P18_J649_005_volume_map_sharp.mrc as #2, grid size 320,320,320, pixel 0.874, shown at level 0.02, step 2, values float32 > open > /Users/yoojoong/Library/CloudStorage/Dropbox/1_RothLab/Experiments/Projects/Tas2Rs/TAS2R14/2025/Prog- > TAS2R14/Structure_work/WorkingMaps/cryosparc_P18_J650_003_volume_map_sharp.mrc Opened cryosparc_P18_J650_003_volume_map_sharp.mrc as #3, grid size 320,320,320, pixel 0.874, shown at level 0.0206, step 2, values float32 > open > /Users/yoojoong/Library/CloudStorage/Dropbox/1_RothLab/Experiments/Projects/Tas2Rs/TAS2R14/2025/Prog- > TAS2R14/Structure_work/WorkingMaps/cryosparc_P18_J651_003_volume_map_sharp.mrc Opened cryosparc_P18_J651_003_volume_map_sharp.mrc as #4, grid size 320,320,320, pixel 0.874, shown at level 0.0237, step 2, values float32 > volume level 0.08 > volume step 1 > lighting soft > set bgColor white > ui mousemode right zoom > surface dust #1-4 > hide #!4 models > hide #!3 models > hide #!2 models > volume #1 level 0.06685 > volume #1 level 0.1162 > volume #1 level 0.1096 > show #!2 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!2 models > show #!3 models > hide #!1 models > show #!4 models > hide #!3 models > volume #4 level 0.1111 > show #!3 models > hide #!3 models > show #!3 models > show #!2 models > hide #!2 models > hide #!3 models > show #!1 models > hide #!4 models > show #!2 models > show #!3 models > show #!4 models > hide #!4 models > hide #!3 models > hide #!2 models > show #!2 models > hide #!1 models > volume #2 level 0.07457 > show #!3 models > hide #!2 models > volume #3 level 0.07018 > volume #3 level 0.08 > volume #4 level 0.09695 > volume #4 level 0.1421 > volume #4 level 0.1054 > open > /Users/yoojoong/Library/CloudStorage/Dropbox/1_RothLab/Experiments/Projects/Tas2Rs/TAS2R14/2025/Prog- > TAS2R14/Structure_work/ConsensusMap/cryosparc_P18_J139_005_volume_map_sharp.mrc Opened cryosparc_P18_J139_005_volume_map_sharp.mrc as #5, grid size 320,320,320, pixel 0.874, shown at level 0.025, step 2, values float32 > open > /Users/yoojoong/Library/CloudStorage/Dropbox/1_RothLab/Experiments/Projects/Tas2Rs/TAS2R14/2025/Prog- > TAS2R14/Structure_work/ConsensusMap/cryosparc_P18_J211_mask.mrc Opened cryosparc_P18_J211_mask.mrc as #6, grid size 320,320,320, pixel 0.874, shown at level 0.552, step 2, values float32 > volume #5 step 1 > volume #5 color silver > surface dust #5 > volume #5 level 0.101 > volume #6 step 1 > volume #6 level 1 > volume #5 level 0.09084 > volume #6 color #ffb2b280 > volume #6 color #ffb2b244 > volume #6 color #ff40ff21 > volume #5 level 0.101 > open /Users/yoojoong/Downloads/cryosparc_P18_J653_005_volume_map_sharp.mrc Opened cryosparc_P18_J653_005_volume_map_sharp.mrc as #7, grid size 320,320,320, pixel 0.874, shown at level 0.02, step 2, values float32 > open /Users/yoojoong/Downloads/cryosparc_P18_J652_005_volume_map_sharp.mrc Opened cryosparc_P18_J652_005_volume_map_sharp.mrc as #8, grid size 320,320,320, pixel 0.874, shown at level 0.0242, step 2, values float32 > hide #!5 models > hide #!6 models > volume #7 step 1 > surface dust #7 > surface dust #8 > volume #7 level 0.07186 > volume #7 level 0.0932 > show #!2 models > hide #!2 models > show #!1 models > hide #!1 models > volume #7 level 0.08101 > volume #8 level 0.07445 > volume #8 step 1 > volume #8 level 0.08623 > volume #8 level 0.1059 > open > /Users/yoojoong/Library/CloudStorage/Dropbox/1_RothLab/Experiments/Projects/Tas2Rs/TAS2R14/2025/Prog- > TAS2R14/Structure_work/WorkingModels&Maps_SetB_BEST/28p1-TAS2R14_distant/28p1-TAS2R14_J534-0617-1250.pdb Summary of feedback from opening /Users/yoojoong/Library/CloudStorage/Dropbox/1_RothLab/Experiments/Projects/Tas2Rs/TAS2R14/2025/Prog- TAS2R14/Structure_work/WorkingModels&Maps_SetB_BEST/28p1-TAS2R14_distant/28p1-TAS2R14_J534-0617-1250.pdb --- warning | Start residue of secondary structure not found: HELIX 23 23 ALA R 226 THR R 253 1 28 Chain information for 28p1-TAS2R14_J534-0617-1250.pdb #9 --- Chain | Description A | No description available B | No description available C | No description available D | No description available R | No description available > fitmap #9/R inMap #8 Fit molecule 28p1-TAS2R14_J534-0617-1250.pdb (#9) to map cryosparc_P18_J652_005_volume_map_sharp.mrc (#8) using 2187 atoms average map value = 0.1869, steps = 84 shifted from previous position = 1.33 rotated from previous position = 6.78 degrees atoms outside contour = 758, contour level = 0.10586 Position of 28p1-TAS2R14_J534-0617-1250.pdb (#9) relative to cryosparc_P18_J652_005_volume_map_sharp.mrc (#8) coordinates: Matrix rotation and translation 0.99461596 0.06954705 -0.07682642 -0.04549975 -0.07380060 0.99581071 -0.05398611 17.98318660 0.07275000 0.05936528 0.99558184 -16.84915917 Axis 0.47998289 -0.63337668 -0.60700117 Axis point 240.87500576 0.00000000 -10.07251714 Rotation angle (degrees) 6.78122423 Shift along axis -1.18451079 > hide atoms > show cartoons > open > /Users/yoojoong/Library/CloudStorage/Dropbox/1_RothLab/Experiments/Projects/Tas2Rs/TAS2R14/2025/Prog- > TAS2R14/Structure_work/WorkingModels&Maps_SetB_BEST/28p1-TAS2R14_distant/RealSpaceRefine_191/28p1-TAS2R14_J534-0617-1250_real_space_refined_191.pdb Chain information for 28p1-TAS2R14_J534-0617-1250_real_space_refined_191.pdb #10 --- Chain | Description A | No description available B | No description available C | No description available D | No description available R | No description available > hide atoms > show cartoons > close #9 > open > /Users/yoojoong/Library/CloudStorage/Dropbox/1_RothLab/Experiments/Projects/Tas2Rs/TAS2R14/2025/Prog- > TAS2R14/Structure_work/WorkingModels&Maps_SetB_BEST/28p1-TAS2R14_distant/RealSpaceRefine_191/28p1-TAS2R14_J534-0617-1250_real_space_refined_191.pdb Chain information for 28p1-TAS2R14_J534-0617-1250_real_space_refined_191.pdb #9 --- Chain | Description A | No description available B | No description available C | No description available D | No description available R | No description available > close #9-10 > open > /Users/yoojoong/Library/CloudStorage/Dropbox/1_RothLab/Experiments/Projects/Tas2Rs/TAS2R14/2025/Prog- > TAS2R14/Structure_work/WorkingModels&Maps_SetB_BEST/28p1-TAS2R14_distant/RealSpaceRefine_191/28p1-TAS2R14_J534-0617-1250_real_space_refined_191.pdb Chain information for 28p1-TAS2R14_J534-0617-1250_real_space_refined_191.pdb #9 --- Chain | Description A | No description available B | No description available C | No description available D | No description available R | No description available > hide atoms > show cartoons > fitmap #9/R inMap #8 Fit molecule 28p1-TAS2R14_J534-0617-1250_real_space_refined_191.pdb (#9) to map cryosparc_P18_J652_005_volume_map_sharp.mrc (#8) using 2187 atoms average map value = 0.1904, steps = 56 shifted from previous position = 1.46 rotated from previous position = 6.84 degrees atoms outside contour = 730, contour level = 0.10586 Position of 28p1-TAS2R14_J534-0617-1250_real_space_refined_191.pdb (#9) relative to cryosparc_P18_J652_005_volume_map_sharp.mrc (#8) coordinates: Matrix rotation and translation 0.99452369 0.06977472 -0.07780822 -0.00608448 -0.07412113 0.99576196 -0.05444425 18.15044176 0.07367963 0.05991333 0.99548064 -16.93844675 Axis 0.48012017 -0.63600838 -0.60413406 Axis point 240.12032438 0.00000000 -8.87235912 Rotation angle (degrees) 6.83973993 Shift along axis -1.31366162 > select ::name=""LIG"" 23 atoms, 25 bonds, 1 residue, 1 model selected > show sel atoms > show #!7 models > hide #!8 models > fitmap #9/R inMap #7 Fit molecule 28p1-TAS2R14_J534-0617-1250_real_space_refined_191.pdb (#9) to map cryosparc_P18_J653_005_volume_map_sharp.mrc (#7) using 2187 atoms average map value = 0.1154, steps = 68 shifted from previous position = 2.36 rotated from previous position = 4.8 degrees atoms outside contour = 1002, contour level = 0.081006 Position of 28p1-TAS2R14_J534-0617-1250_real_space_refined_191.pdb (#9) relative to cryosparc_P18_J653_005_volume_map_sharp.mrc (#7) coordinates: Matrix rotation and translation 0.98439139 0.13755504 -0.10978248 -4.49314176 -0.13968295 0.99012481 -0.01189657 21.19230270 0.10706193 0.02704562 0.99388444 -15.72800315 Axis 0.10996982 -0.61235235 -0.78289925 Axis point 143.24843282 47.99332997 0.00000000 Rotation angle (degrees) 10.19847420 Shift along axis -1.15782434 > volume #7 color #b2ffb275 > ui tool show ""Side View"" > graphics silhouettes true > show #!8 models > hide #!7 models > fitmap #9/R inMap #8 Fit molecule 28p1-TAS2R14_J534-0617-1250_real_space_refined_191.pdb (#9) to map cryosparc_P18_J652_005_volume_map_sharp.mrc (#8) using 2187 atoms average map value = 0.1904, steps = 92 shifted from previous position = 2.36 rotated from previous position = 4.8 degrees atoms outside contour = 732, contour level = 0.10586 Position of 28p1-TAS2R14_J534-0617-1250_real_space_refined_191.pdb (#9) relative to cryosparc_P18_J652_005_volume_map_sharp.mrc (#8) coordinates: Matrix rotation and translation 0.99451707 0.06992912 -0.07775420 -0.02787968 -0.07426553 0.99575633 -0.05435039 18.15657562 0.07362356 0.05982684 0.99548999 -16.92905713 Axis 0.47931434 -0.63548166 -0.60532704 Axis point 240.09474832 0.00000000 -9.25115073 Rotation angle (degrees) 6.84043790 Shift along axis -1.30391796 > show #!1 models > hide #!8 models > fitmap #9/R inMap #1 Fit molecule 28p1-TAS2R14_J534-0617-1250_real_space_refined_191.pdb (#9) to map cryosparc_P18_J648_004_volume_map_sharp.mrc (#1) using 2187 atoms average map value = 0.1527, steps = 92 shifted from previous position = 1.17 rotated from previous position = 16.7 degrees atoms outside contour = 1055, contour level = 0.10959 Position of 28p1-TAS2R14_J534-0617-1250_real_space_refined_191.pdb (#9) relative to cryosparc_P18_J648_004_volume_map_sharp.mrc (#1) coordinates: Matrix rotation and translation 0.98409442 -0.12732080 0.12388534 4.96080326 0.12594467 0.99185704 0.01890923 -16.93231213 -0.12528409 -0.00300576 0.99211636 18.98394391 Axis -0.06156550 0.69998850 0.71149546 Axis point 143.34445587 21.70806724 0.00000000 Rotation angle (degrees) 10.25218590 Shift along axis 1.34915183 > volume #1 level 0.08251 > show #!8 models > show #!7 models > hide #!8 models > volume #7 level 0.06881 > fitmap #9/R inMap #7 Fit molecule 28p1-TAS2R14_J534-0617-1250_real_space_refined_191.pdb (#9) to map cryosparc_P18_J653_005_volume_map_sharp.mrc (#7) using 2187 atoms average map value = 0.1154, steps = 112 shifted from previous position = 3.36 rotated from previous position = 20.4 degrees atoms outside contour = 840, contour level = 0.068812 Position of 28p1-TAS2R14_J534-0617-1250_real_space_refined_191.pdb (#9) relative to cryosparc_P18_J653_005_volume_map_sharp.mrc (#7) coordinates: Matrix rotation and translation 0.98439760 0.13747980 -0.10982108 -4.47632401 -0.13962283 0.99013167 -0.01203121 21.19866776 0.10708328 0.02717702 0.99387855 -15.75038681 Axis 0.11073358 -0.61259060 -0.78260516 Axis point 143.37305667 47.90042361 0.00000000 Rotation angle (degrees) 10.19731356 Shift along axis -1.15545005 > show #!8 models > hide #!7 models > fitmap #9/R inMap #8 Fit molecule 28p1-TAS2R14_J534-0617-1250_real_space_refined_191.pdb (#9) to map cryosparc_P18_J652_005_volume_map_sharp.mrc (#8) using 2187 atoms average map value = 0.1904, steps = 80 shifted from previous position = 2.36 rotated from previous position = 4.8 degrees atoms outside contour = 735, contour level = 0.10586 Position of 28p1-TAS2R14_J534-0617-1250_real_space_refined_191.pdb (#9) relative to cryosparc_P18_J652_005_volume_map_sharp.mrc (#8) coordinates: Matrix rotation and translation 0.99452293 0.06980079 -0.07779448 -0.01228620 -0.07414687 0.99575970 -0.05445054 18.15514520 0.07366392 0.05992053 0.99548137 -16.93409481 Axis 0.48013842 -0.63583387 -0.60430322 Axis point 240.13241985 0.00000000 -8.94068313 Rotation angle (degrees) 6.84028985 Shift along axis -1.31622729 > fitmap #9/R inMap #7 Fit molecule 28p1-TAS2R14_J534-0617-1250_real_space_refined_191.pdb (#9) to map cryosparc_P18_J653_005_volume_map_sharp.mrc (#7) using 2187 atoms average map value = 0.1154, steps = 68 shifted from previous position = 2.36 rotated from previous position = 4.8 degrees atoms outside contour = 840, contour level = 0.068812 Position of 28p1-TAS2R14_J534-0617-1250_real_space_refined_191.pdb (#9) relative to cryosparc_P18_J653_005_volume_map_sharp.mrc (#7) coordinates: Matrix rotation and translation 0.98439948 0.13746383 -0.10982424 -4.47540784 -0.13961085 0.99013290 -0.01206827 21.20257494 0.10708165 0.02721266 0.99387776 -15.75305295 Axis 0.11094293 -0.61261720 -0.78255468 Axis point 143.40281744 47.89696418 0.00000000 Rotation angle (degrees) 10.19693882 Shift along axis -1.15795170 > show #!7 models > hide #!8 models > save > /Users/yoojoong/Dropbox/1_RothLab/Experiments/Projects/Tas2Rs/TAS2R14/2025/Prog- > TAS2R14/Structure_work/3DVA/P18_J267_000_cls6/Classified6.cxs > save > /Users/yoojoong/Dropbox/1_RothLab/Experiments/Projects/Tas2Rs/TAS2R14/2025/Prog- > TAS2R14/Structure_work/3DVA/P18_J267_000_cls6/28p1-TAS2R14_J653.pdb relModel > #7 > open /Users/yoojoong/Downloads/cryosparc_P18_J660_005_volume_map_sharp.mrc Opened cryosparc_P18_J660_005_volume_map_sharp.mrc as #10, grid size 320,320,320, pixel 0.874, shown at level 0.0216, step 2, values float32 > hide #!7 models > ui tool show ""Side View"" > surface dust #10 > volume step 1 #10 Expected a keyword > volume step 1 > volume level 0.08 > volume #10 level 0.09726 > fitmap #9 inMap #10 Fit molecule 28p1-TAS2R14_J534-0617-1250_real_space_refined_191.pdb (#9) to map cryosparc_P18_J660_005_volume_map_sharp.mrc (#10) using 8635 atoms average map value = 0.06971, steps = 128 shifted from previous position = 4.62 rotated from previous position = 11.2 degrees atoms outside contour = 6943, contour level = 0.097261 Position of 28p1-TAS2R14_J534-0617-1250_real_space_refined_191.pdb (#9) relative to cryosparc_P18_J660_005_volume_map_sharp.mrc (#10) coordinates: Matrix rotation and translation 0.99981784 -0.01696141 0.00875206 1.12657269 0.01702193 0.99983139 -0.00688757 -0.84088456 -0.00863376 0.00703530 0.99993798 0.39454486 Axis 0.34265551 0.42788214 0.83636360 Axis point 58.93450530 58.59063844 0.00000000 Rotation angle (degrees) 1.16410858 Shift along axis 0.35620982 > fitmap #9/R inMap #10 Fit molecule 28p1-TAS2R14_J534-0617-1250_real_space_refined_191.pdb (#9) to map cryosparc_P18_J660_005_volume_map_sharp.mrc (#10) using 2187 atoms average map value = 0.1493, steps = 44 shifted from previous position = 0.0972 rotated from previous position = 1.41 degrees atoms outside contour = 920, contour level = 0.097261 Position of 28p1-TAS2R14_J534-0617-1250_real_space_refined_191.pdb (#9) relative to cryosparc_P18_J660_005_volume_map_sharp.mrc (#10) coordinates: Matrix rotation and translation 0.99919089 -0.03017017 0.02659568 0.92391474 0.03007368 0.99953960 0.00402059 -3.88224509 -0.02670474 -0.00321750 0.99963819 4.28480103 Axis -0.08962148 0.65996164 0.74593473 Axis point 141.62384962 28.46283705 0.00000000 Rotation angle (degrees) 2.31431609 Shift along axis 0.55124644 > volume #10 level 0.09036 > volume #10 level 0.08 > volume #10 level 0.09381 > show #!6 models > volume #6 level 0.939 > volume #6 level 1 > volume #10 level 0.0869 > open /Users/yoojoong/Downloads/cryosparc_P18_J666_004_volume_map_sharp.mrc Opened cryosparc_P18_J666_004_volume_map_sharp.mrc as #11, grid size 320,320,320, pixel 0.874, shown at level 0.0213, step 2, values float32 > volume #11 step 1 > volume #11 level 0.05304 > surface dust #11 > volume #11 level 0.07523 > volume #11 level 0.1006 > hide #!6 models > open /Users/yoojoong/Downloads/cryosparc_P18_J655_008_volume_map.mrc Opened cryosparc_P18_J655_008_volume_map.mrc as #12, grid size 320,320,320, pixel 0.874, shown at level 0.0186, step 2, values float32 > volume #12 step 1 > volume #12 level 0.03098 > open /Users/yoojoong/Downloads/cryosparc_P18_J665_008_volume_map.mrc Opened cryosparc_P18_J665_008_volume_map.mrc as #13, grid size 320,320,320, pixel 0.874, shown at level 0.0187, step 2, values float32 > volume #13 step 1 > volume #13 level 0.02848 ===== Log before crash end ===== Log: Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.9 (2024-12-11) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/yoojoong/Downloads/cryosparc_P18_J655_008_volume_map_sharp.mrc Opened cryosparc_P18_J655_008_volume_map_sharp.mrc as #1, grid size 320,320,320, pixel 0.874, shown at level 0.0196, step 2, values float32 > open /Users/yoojoong/Downloads/cryosparc_P18_J211_mask.mrc Opened cryosparc_P18_J211_mask.mrc as #2, grid size 320,320,320, pixel 0.874, shown at level 0.552, step 2, values float32 OpenGL version: 4.1 Metal - 89.4 OpenGL renderer: Apple M1 Pro OpenGL vendor: Apple Python: 3.11.4 Locale: en_US.UTF-8 Qt version: PyQt6 6.7.1, Qt 6.7.1 Qt runtime version: 6.7.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: MacBookPro18,3 Model Number: MKGR3LL/A Chip: Apple M1 Pro Total Number of Cores: 8 (6 performance and 2 efficiency) Memory: 16 GB System Firmware Version: 11881.121.1 OS Loader Version: 11881.121.1 Software: System Software Overview: System Version: macOS 15.5 (24F74) Kernel Version: Darwin 24.5.0 Time since boot: 46 minutes, 45 seconds Graphics/Displays: Apple M1 Pro: Chipset Model: Apple M1 Pro Type: GPU Bus: Built-In Total Number of Cores: 14 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: LG ULTRAFINE: Resolution: 5120 x 2880 (5K/UHD+ - Ultra High Definition Plus) UI Looks like: 2560 x 1440 @ 60.00Hz Main Display: Yes Mirror: Off Online: Yes Rotation: Supported Color LCD: Display Type: Built-in Liquid Retina XDR Display Resolution: 3024 x 1964 Retina Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal T24i-10: Resolution: 1920 x 1080 (1080p FHD - Full High Definition) UI Looks like: 1920 x 1080 @ 60.00Hz Mirror: Off Online: Yes Rotation: Supported Installed Packages: alabaster: 1.0.0 anyio: 4.7.0 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.0 auditwheel: 6.1.0 babel: 2.16.0 beautifulsoup4: 4.12.3 blockdiag: 3.0.0 blosc2: 3.0.0 build: 1.2.1 certifi: 2023.11.17 cftime: 1.6.4.post1 charset-normalizer: 3.4.0 ChimeraX-AddCharge: 1.5.18 ChimeraX-AddH: 2.2.6 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.5 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.16.1 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.58.8 ChimeraX-AtomicLibrary: 14.1.11 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.4.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.4 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.6 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.9 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.4 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2.6 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.3 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.2.1 ChimeraX-Label: 1.1.14 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.6 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.7.2 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.14.2 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.18 ChimeraX-ModelPanel: 1.5 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.14 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.6 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.2 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.2 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.6 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.14 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.0 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.18.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.41 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.4 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.3.1 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.0.10 debugpy: 1.8.9 decorator: 5.1.1 docutils: 0.21.2 executing: 2.1.0 filelock: 3.15.4 fonttools: 4.55.3 funcparserlib: 2.0.0a0 glfw: 2.8.0 grako: 3.16.5 h11: 0.14.0 h5py: 3.12.1 html2text: 2024.2.26 httpcore: 1.0.7 httpx: 0.28.1 idna: 3.10 ihm: 1.3 imagecodecs: 2024.6.1 imagesize: 1.4.1 ipykernel: 6.29.5 ipython: 8.26.0 ipywidgets: 8.1.5 jedi: 0.19.1 Jinja2: 3.1.4 jupyter_client: 8.6.2 jupyter_core: 5.7.2 jupyterlab_widgets: 3.0.13 kiwisolver: 1.4.7 line_profiler: 4.1.3 lxml: 5.2.2 lz4: 4.3.3 MarkupSafe: 3.0.2 matplotlib: 3.9.2 matplotlib-inline: 0.1.7 msgpack: 1.0.8 ndindex: 1.9.2 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.10.2 numpy: 1.26.4 openvr: 1.26.701 packaging: 23.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pexpect: 4.9.0 pillow: 10.4.0 pip: 24.2 pkginfo: 1.11.1 platformdirs: 4.3.6 prompt_toolkit: 3.0.48 psutil: 6.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 pyelftools: 0.31 Pygments: 2.18.0 pynmrstar: 3.3.4 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.3401 pyparsing: 3.2.0 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.7.1 PyQt6-Qt6: 6.7.3 PyQt6-WebEngine-commercial: 6.7.0 PyQt6-WebEngine-Qt6: 6.7.3 PyQt6-WebEngineSubwheel-Qt6: 6.7.3 PyQt6_sip: 13.8.0 python-dateutil: 2.9.0.post0 pytz: 2024.2 pyzmq: 26.2.0 qtconsole: 5.5.2 QtPy: 2.4.2 qtshim: 1.0 RandomWords: 0.4.0 requests: 2.32.3 scipy: 1.14.0 setuptools: 72.1.0 sfftk-rw: 0.8.1 six: 1.16.0 sniffio: 1.3.1 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.6 Sphinx: 8.0.2 sphinx-autodoc-typehints: 2.2.3 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 stack-data: 0.6.3 superqt: 0.6.3 tables: 3.10.1 tcia_utils: 1.5.1 tifffile: 2024.7.24 tinyarray: 1.2.4 tornado: 6.4.2 traitlets: 5.14.3 typing_extensions: 4.12.2 tzdata: 2024.2 urllib3: 2.2.3 wcwidth: 0.2.13 webcolors: 24.6.0 wheel: 0.43.0 wheel-filename: 1.4.1 widgetsnbextension: 4.0.13 }}} " defect closed normal Window Toolkit duplicate all ChimeraX