id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 178 Error selecting an atom with the mouse Tom Goddard Eric Pettersen "Traceback (most recent call last): File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py"", line 34, in lambda e: self.dispatch_mouse_event(e, ""left"", ""mouse_up"")) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py"", line 75, in dispatch_mouse_event f(MouseEvent(event)) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py"", line 228, in mouse_up mouse_select(event, self.session, self.view) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py"", line 197, in mouse_select pick = view.first_intercept(x,y) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/view.py"", line 726, in first_intercept p = self.drawing.first_intercept(xyz1, xyz2, exclude='is_outline_box') File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py"", line 815, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py"", line 831, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py"", line 724, in first_intercept pa = self._atom_first_intercept(xyz1, xyz2) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py"", line 763, in _atom_first_intercept atom = self.atoms[anum] File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molarray.py"", line 109, in __getitem__ return object_map(self._pointers[i], self._object_class) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molobject.py"", line 698, in object_map _object_map[p] = o = object_type(p) File """", line 1, in __init__ NameError: name 'set_c_pointer' is not defined Traceback (most recent call last): File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/wx/core.py"", line 2908, in lambda event: event.callable(*event.args, **event.kw) ) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/graphics.py"", line 63, in or s.mouse_modes.mouse_pause_tracking()) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py"", line 115, in mouse_pause_tracking self.mouse_pause() File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py"", line 129, in mouse_pause m.pause(self.mouse_pause_position) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py"", line 337, in pause p = self.view.first_intercept(x,y) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/view.py"", line 726, in first_intercept p = self.drawing.first_intercept(xyz1, xyz2, exclude='is_outline_box') File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py"", line 815, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py"", line 831, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py"", line 724, in first_intercept pa = self._atom_first_intercept(xyz1, xyz2) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py"", line 763, in _atom_first_intercept atom = self.atoms[anum] File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molarray.py"", line 109, in __getitem__ return object_map(self._pointers[i], self._object_class) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molobject.py"", line 698, in object_map _object_map[p] = o = object_type(p) File """", line 1, in __init__ NameError: name 'set_c_pointer' is not defined Traceback (most recent call last): File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/wx/core.py"", line 2908, in lambda event: event.callable(*event.args, **event.kw) ) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/graphics.py"", line 63, in or s.mouse_modes.mouse_pause_tracking()) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py"", line 115, in mouse_pause_tracking self.mouse_pause() File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py"", line 129, in mouse_pause m.pause(self.mouse_pause_position) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py"", line 337, in pause p = self.view.first_intercept(x,y) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/view.py"", line 726, in first_intercept p = self.drawing.first_intercept(xyz1, xyz2, exclude='is_outline_box') File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py"", line 815, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py"", line 831, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py"", line 724, in first_intercept pa = self._atom_first_intercept(xyz1, xyz2) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py"", line 763, in _atom_first_intercept atom = self.atoms[anum] File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molarray.py"", line 109, in __getitem__ return object_map(self._pointers[i], self._object_class) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molobject.py"", line 698, in object_map _object_map[p] = o = object_type(p) File """", line 1, in __init__ NameError: name 'set_c_pointer' is not defined Traceback (most recent call last): File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/wx/core.py"", line 2908, in lambda event: event.callable(*event.args, **event.kw) ) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/graphics.py"", line 63, in or s.mouse_modes.mouse_pause_tracking()) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py"", line 115, in mouse_pause_tracking self.mouse_pause() File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py"", line 129, in mouse_pause m.pause(self.mouse_pause_position) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py"", line 337, in pause p = self.view.first_intercept(x,y) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/view.py"", line 726, in first_intercept p = self.drawing.first_intercept(xyz1, xyz2, exclude='is_outline_box') File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py"", line 815, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py"", line 831, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py"", line 724, in first_intercept pa = self._atom_first_intercept(xyz1, xyz2) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py"", line 763, in _atom_first_intercept atom = self.atoms[anum] File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molarray.py"", line 109, in __getitem__ return object_map(self._pointers[i], self._object_class) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molobject.py"", line 698, in object_map _object_map[p] = o = object_type(p) File """", line 1, in __init__ NameError: name 'set_c_pointer' is not defined Traceback (most recent call last): File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/wx/core.py"", line 2908, in lambda event: event.callable(*event.args, **event.kw) ) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/graphics.py"", line 63, in or s.mouse_modes.mouse_pause_tracking()) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py"", line 115, in mouse_pause_tracking self.mouse_pause() File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py"", line 129, in mouse_pause m.pause(self.mouse_pause_position) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py"", line 337, in pause p = self.view.first_intercept(x,y) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/view.py"", line 726, in first_intercept p = self.drawing.first_intercept(xyz1, xyz2, exclude='is_outline_box') File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py"", line 815, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py"", line 831, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py"", line 724, in first_intercept pa = self._atom_first_intercept(xyz1, xyz2) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py"", line 763, in _atom_first_intercept atom = self.atoms[anum] File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molarray.py"", line 109, in __getitem__ return object_map(self._pointers[i], self._object_class) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molobject.py"", line 698, in object_map _object_map[p] = o = object_type(p) File """", line 1, in __init__ NameError: name 'set_c_pointer' is not defined Traceback (most recent call last): File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/wx/core.py"", line 2908, in lambda event: event.callable(*event.args, **event.kw) ) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/graphics.py"", line 63, in or s.mouse_modes.mouse_pause_tracking()) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py"", line 115, in mouse_pause_tracking self.mouse_pause() File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py"", line 129, in mouse_pause m.pause(self.mouse_pause_position) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py"", line 337, in pause p = self.view.first_intercept(x,y) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/view.py"", line 726, in first_intercept p = self.drawing.first_intercept(xyz1, xyz2, exclude='is_outline_box') File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py"", line 815, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py"", line 831, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py"", line 724, in first_intercept pa = self._atom_first_intercept(xyz1, xyz2) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py"", line 763, in _atom_first_intercept atom = self.atoms[anum] File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molarray.py"", line 109, in __getitem__ return object_map(self._pointers[i], self._object_class) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molobject.py"", line 698, in object_map _object_map[p] = o = object_type(p) File """", line 1, in __init__ NameError: name 'set_c_pointer' is not defined Traceback (most recent call last): File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/wx/core.py"", line 2908, in lambda event: event.callable(*event.args, **event.kw) ) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/graphics.py"", line 63, in or s.mouse_modes.mouse_pause_tracking()) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py"", line 115, in mouse_pause_tracking self.mouse_pause() File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py"", line 129, in mouse_pause m.pause(self.mouse_pause_position) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py"", line 337, in pause p = self.view.first_intercept(x,y) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/view.py"", line 726, in first_intercept p = self.drawing.first_intercept(xyz1, xyz2, exclude='is_outline_box') File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py"", line 815, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py"", line 831, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py"", line 724, in first_intercept pa = self._atom_first_intercept(xyz1, xyz2) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py"", line 763, in _atom_first_intercept atom = self.atoms[anum] File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molarray.py"", line 109, in __getitem__ return object_map(self._pointers[i], self._object_class) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molobject.py"", line 698, in object_map _object_map[p] = o = object_type(p) File """", line 1, in __init__ NameError: name 'set_c_pointer' is not defined Traceback (most recent call last): File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/wx/core.py"", line 2908, in lambda event: event.callable(*event.args, **event.kw) ) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/graphics.py"", line 63, in or s.mouse_modes.mouse_pause_tracking()) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py"", line 115, in mouse_pause_tracking self.mouse_pause() File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py"", line 129, in mouse_pause m.pause(self.mouse_pause_position) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py"", line 337, in pause p = self.view.first_intercept(x,y) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/view.py"", line 726, in first_intercept p = self.drawing.first_intercept(xyz1, xyz2, exclude='is_outline_box') File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py"", line 815, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py"", line 831, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py"", line 724, in first_intercept pa = self._atom_first_intercept(xyz1, xyz2) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py"", line 763, in _atom_first_intercept atom = self.atoms[anum] File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molarray.py"", line 109, in __getitem__ return object_map(self._pointers[i], self._object_class) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molobject.py"", line 698, in object_map _object_map[p] = o = object_type(p) File """", line 1, in __init__ NameError: name 'set_c_pointer' is not defined Traceback (most recent call last): File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/wx/core.py"", line 2908, in lambda event: event.callable(*event.args, **event.kw) ) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/graphics.py"", line 63, in or s.mouse_modes.mouse_pause_tracking()) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py"", line 115, in mouse_pause_tracking self.mouse_pause() File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py"", line 129, in mouse_pause m.pause(self.mouse_pause_position) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/ui/mousemodes.py"", line 337, in pause p = self.view.first_intercept(x,y) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/view.py"", line 726, in first_intercept p = self.drawing.first_intercept(xyz1, xyz2, exclude='is_outline_box') File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py"", line 815, in first_intercept p = self.first_intercept_children(self.child_drawings(), mxyz1, mxyz2, exclude) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/graphics/drawing.py"", line 831, in first_intercept_children p = d.first_intercept(cxyz1, cxyz2, exclude) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py"", line 724, in first_intercept pa = self._atom_first_intercept(xyz1, xyz2) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/structure.py"", line 763, in _atom_first_intercept atom = self.atoms[anum] File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molarray.py"", line 109, in __getitem__ return object_map(self._pointers[i], self._object_class) File ""/Users/goddard/ucsf/chimera2/Chimera2.app/Contents/Library/Frameworks/Python.framework/Versions/3.5/lib/python3.5/site-packages/chimera/core/atomic/molobject.py"", line 698, in object_map _object_map[p] = o = object_type(p) File """", line 1, in __init__ NameError: name 'set_c_pointer' is not defined" defect closed major Core fixed all chimera