id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 17764 Crash on Mac waking from sleep chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-15.4.1-arm64-arm-64bit ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC) Description Last time you used ChimeraX it crashed. This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX. 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} ], ""experiments"" : [ ] } } ===== Log before crash start ===== Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.9 (2024-12-11) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/annguyen/Downloads/cryosparc_P8_J23_001_volume_map_sharp.mrc > format mrc Opened cryosparc_P8_J23_001_volume_map_sharp.mrc as #1, grid size 100,100,100, pixel 5.73, shown at level 0.899, step 1, values float32 > open ""/Users/annguyen/ownCloud - Anh Nguyen@oc.biophys.mpg.de/Chimera > sessions/18-05-25-scSec72-scRibo-10xbin.cxs"" format session Opened cryosparc_P8_J16_class_02_00042_volume.mrc as #2, grid size 128,128,128, pixel 4.48, shown at level 0.159, step 1, values float32 Opened cryosparc_P8_J16_class_03_00042_volume.mrc z flip as #3, grid size 128,128,128, pixel 4.48, shown at level 0.27, step 1, values float32 Opened cryosparc_P8_J16_class_00_00042_volume.mrc z flip as #5, grid size 128,128,128, pixel 4.48, shown at level 0.0367, step 1, values float32 Opened cryosparc_P5_J26_class_04_00042_volume.mrc as #1, grid size 128,128,128, pixel 4.48, shown at level 0.0781, step 1, values float32 opened ChimeraX session > ui mousemode right ""rotate selected models"" > view matrix models > #7,0.59086,0.31345,-0.7434,445.8,-0.73919,0.57952,-0.34316,385.12,0.32325,0.75227,0.57411,145.25 > view matrix models > #7,0.76007,-0.059048,-0.64715,446.99,-0.19225,0.93085,-0.31073,382.03,0.62075,0.3606,0.69616,146.16 > view matrix models > #7,0.90861,-0.16405,-0.38408,446.59,-0.073446,0.84253,-0.53362,382.62,0.41114,0.51306,0.75348,145.82 > ui mousemode right ""translate selected models"" > view matrix models > #7,0.90861,-0.16405,-0.38408,431.19,-0.073446,0.84253,-0.53362,390.63,0.41114,0.51306,0.75348,167.57 > view matrix models > #7,0.90861,-0.16405,-0.38408,411.79,-0.073446,0.84253,-0.53362,400.21,0.41114,0.51306,0.75348,153.94 > view matrix models > #7,0.90861,-0.16405,-0.38408,413.1,-0.073446,0.84253,-0.53362,403.03,0.41114,0.51306,0.75348,157.73 > ui mousemode right ""rotate selected models"" > view matrix models > #7,0.48394,-0.26866,-0.83284,415.56,-0.097394,0.92926,-0.35636,402.31,0.86967,0.25357,0.42354,158.54 > view matrix models > #7,0.58009,-0.3196,-0.74923,415.4,0.23887,0.94612,-0.21864,401.12,0.77874,-0.052136,0.62518,159.82 > ui tool show ""Side View"" > hide #!2 models > show #!1 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!3 models > hide #!3 models > show #!5 models > show #4 models > show #!3 models > hide #!1 models > color #5 #b2b2ffd6 models > hide #!3 models > volume #5 level 0.1274 > show #!3 models > hide #4 models > show #4 models > hide #!3 models > ui tool show ""Side View"" > select #6/AR 1169 atoms, 1200 bonds, 148 residues, 1 model selected > select clear > select #6/BT 1075 atoms, 1074 bonds, 217 residues, 1 model selected Cell requested for row 4 is out of bounds for table with 10 rows! Resizing table model. > hide #4 models > show #!3 models > hide #!3 models > show #!2 models > hide #!5 models > hide #!2 models > show #!1 models > color #1 #b2b2b2b8 models > hide #!6 models > hide #!7 models > select add #6 205800 atoms, 220962 bonds, 5151 pseudobonds, 17074 residues, 4 models selected > open /Users/annguyen/Downloads/cryosparc_P9_J33_class_02_00062_volume.mrc Opened cryosparc_P9_J33_class_02_00062_volume.mrc as #8, grid size 128,128,128, pixel 4.48, shown at level 0.722, step 1, values float32 > open /Users/annguyen/Downloads/cryosparc_P9_J33_class_01_00062_volume.mrc Opened cryosparc_P9_J33_class_01_00062_volume.mrc as #9, grid size 128,128,128, pixel 4.48, shown at level 0.769, step 1, values float32 > select up 205800 atoms, 220962 bonds, 5151 pseudobonds, 17074 residues, 4 models selected > select up 205800 atoms, 220962 bonds, 5151 pseudobonds, 17074 residues, 4 models selected > select down 5151 pseudobonds, 3 models selected > select down 11 pseudobonds, 1 model selected > select down 11 pseudobonds, 1 model selected > volflip #8 Unknown command: volflip #8 > volume flip #8 Opened cryosparc_P9_J33_class_02_00062_volume.mrc z flip as #10, grid size 128,128,128, pixel 4.48, shown at step 1, values float32 > volume flip #9 Opened cryosparc_P9_J33_class_01_00062_volume.mrc z flip as #11, grid size 128,128,128, pixel 4.48, shown at step 1, values float32 > close #8 > close #9 > select add #10 11 pseudobonds, 3 models selected > ui mousemode right ""translate selected models"" > view matrix models > #6.3,1,0,0,0,0,1,0,0,0,0,1,0,#10,1,0,0,-97.549,0,1,0,189.6,0,0,1,187.32 > select subtract #10 11 pseudobonds, 1 model selected > select add #11 11 pseudobonds, 3 models selected > view matrix models > #6.3,1,0,0,0,0,1,0,0,0,0,1,0,#11,1,0,0,175.96,0,1,0,87.497,0,0,1,197.3 > volume #10 level 0.1687 > volume #11 level 0.1388 > ui mousemode right ""rotate selected models"" > view matrix models > #6.3,1,0,0,0,0,1,0,0,0,0,1,0,#11,0.31459,-0.010276,-0.94917,679.84,-0.82378,0.49386,-0.27838,569.47,0.47162,0.86948,0.1469,66.506 > ui mousemode right ""translate selected models"" > view matrix models > #6.3,1,0,0,0,0,1,0,0,0,0,1,0,#11,0.31459,-0.010276,-0.94917,678.55,-0.82378,0.49386,-0.27838,745.36,0.47162,0.86948,0.1469,-166.12 > view matrix models > #6.3,1,0,0,0,0,1,0,0,0,0,1,0,#11,0.31459,-0.010276,-0.94917,470.37,-0.82378,0.49386,-0.27838,709.18,0.47162,0.86948,0.1469,-204.6 > view matrix models > #6.3,1,0,0,0,0,1,0,0,0,0,1,0,#11,0.31459,-0.010276,-0.94917,528.12,-0.82378,0.49386,-0.27838,578.04,0.47162,0.86948,0.1469,-356.41 > select add #10 11 pseudobonds, 6 models selected > view matrix models > #6.3,1,0,0,0,0,1,0,0,0,0,1,0,#10,1,0,0,-93.64,0,1,0,185.75,0,0,1,191.28,#11,0.31459,-0.010276,-0.94917,532.03,-0.82378,0.49386,-0.27838,574.18,0.47162,0.86948,0.1469,-352.46 > select subtract #10 11 pseudobonds, 3 models selected > select add #11 11 pseudobonds, 4 models selected > select add #10 11 pseudobonds, 7 models selected > select subtract #11 11 pseudobonds, 4 models selected > select add #6 205800 atoms, 220962 bonds, 5151 pseudobonds, 17074 residues, 7 models selected > select subtract #6 3 models selected > view matrix models #10,1,0,0,-88.387,0,1,0,188.61,0,0,1,178.22 > ui mousemode right ""rotate selected models"" > view matrix models > #10,-0.12223,0.25178,0.96003,-110.96,0.84315,0.53664,-0.033395,111.22,-0.5236,0.80537,-0.27789,404.39 > ui mousemode right ""translate selected models"" > view matrix models > #10,-0.12223,0.25178,0.96003,81.966,0.84315,0.53664,-0.033395,123.77,-0.5236,0.80537,-0.27789,136.3 > view matrix models > #10,-0.12223,0.25178,0.96003,-0.3004,0.84315,0.53664,-0.033395,67,-0.5236,0.80537,-0.27789,115.25 > view matrix models > #10,-0.12223,0.25178,0.96003,29.25,0.84315,0.53664,-0.033395,17.117,-0.5236,0.80537,-0.27789,74.259 > ui tool show ""Fit in Map"" > fitmap #10 inMap #1 Fit map cryosparc_P9_J33_class_02_00062_volume.mrc z flip in map cryosparc_P5_J26_class_04_00042_volume.mrc using 57547 points correlation = 0.9668, correlation about mean = 0.8479, overlap = 3.447e+04 steps = 120, shift = 24.1, angle = 19.7 degrees Position of cryosparc_P9_J33_class_02_00062_volume.mrc z flip (#10) relative to cryosparc_P5_J26_class_04_00042_volume.mrc (#1) coordinates: Matrix rotation and translation -0.97873340 0.20508082 0.00476722 507.04152323 0.20458240 0.97753392 -0.05072883 -42.12606142 -0.01506363 -0.04867470 -0.99870106 587.46965762 Axis 0.10299879 0.99436746 -0.02499214 Axis point 257.17507857 0.00000000 291.93312044 Rotation angle (degrees) 179.42866054 Shift along axis -4.34624666 > fitmap #11 inMap #1 Fit map cryosparc_P9_J33_class_01_00062_volume.mrc z flip in map cryosparc_P5_J26_class_04_00042_volume.mrc using 59683 points correlation = 0.9783, correlation about mean = 0.9062, overlap = 3.718e+04 steps = 172, shift = 33.4, angle = 31.8 degrees Position of cryosparc_P9_J33_class_01_00062_volume.mrc z flip (#11) relative to cryosparc_P5_J26_class_04_00042_volume.mrc (#1) coordinates: Matrix rotation and translation 0.98177103 0.18847476 -0.02455321 -41.60356428 -0.18726559 0.98129273 0.04467788 43.23556195 0.03251454 -0.03926548 0.99869964 8.32189739 Axis -0.21567656 -0.14662475 -0.96539360 Axis point 202.02954915 246.45786347 0.00000000 Rotation angle (degrees) 11.22163528 Shift along axis -5.40039656 > hide #!1 models > show #!2 models > hide #!11 models > select subtract #10 Nothing selected > color #10 #ddc7ffff models > color #10 #b8aaffff models > show #!6 models > color #10 #b8aaffc7 models > hide #!2 models > ui tool show ""Side View"" > show #!2 models > hide #!2 models > hide #!10 models > show #!2 models > save ""/Users/annguyen/ownCloud - Anh Nguyen@oc.biophys.mpg.de/Chimera > sessions/18-05-25-scSec72-scRibo-10xbin.cxs"" > hide #!2 models > show #!5 models > ui mousemode right ""mark surface"" > show #4 models > marker #4 position 306.3,293.8,24.08 color yellow radius 1 > ui mousemode right zoom > ui mousemode right ""translate selected models"" > view matrix models > #4,0.96283,0.22772,0.14524,-63.914,-0.26757,0.87757,0.39784,106.67,-0.036866,-0.42192,0.90589,144.78 > view matrix models > #4,0.96283,0.22772,0.14524,-57.964,-0.26757,0.87757,0.39784,114.93,-0.036866,-0.42192,0.90589,152.16 > view matrix models > #4,0.96283,0.22772,0.14524,-57.872,-0.26757,0.87757,0.39784,114.83,-0.036866,-0.42192,0.90589,152.14 > view matrix models > #4,0.96283,0.22772,0.14524,-58.067,-0.26757,0.87757,0.39784,115.54,-0.036866,-0.42192,0.90589,152.47 > select add #4 2 atoms, 2 residues, 1 model selected > select subtract #4 Nothing selected > hide #4 models > show #4 models > hide #4 models > show #!2 models > hide #!5 models > show #4 models > show #!5 models > show #!11 models > volume #11 level 0.01184 > hide #!11 models > volume #5 level 0.01202 > hide #!5 models > show #!3 models > volume #3 level 0.1426 > color #3 #9a6021ff models > volume #3 level 0.2556 > color #2 #ffffb2c4 models > hide #!3 models > show #!1 models > hide #!6 models > hide #!2 models > hide #4 models > show #!10 models > color #10 #b8aaffff models > color #1 #b2b2b297 models > color #1 #b2b2b296 models > hide #!10 models > show #!11 models > color #1 #b2b2b2ff models > color #11 #b2ffffb6 models > color #11 #b2ffffb5 models > color #11 #b2ffff00 models > color #11 #b2ffff49 models > show #4 models > hide #!1 models > show #!2 models > hide #!11 models > show #!6 models > hide #!2 models > show #!3 models > hide #!3 models > show #!5 models > volume #5 level 0.06039 > show #!2 models > hide #!5 models > show #!10 models > hide #!10 models > show #!10 models > hide #!10 models > hide #!6 models > show #!5 models > volume #5 color #b2b2ff > color #10 #966bffff models > color #10 #7ab6ffff models > color #10 #5179a9ff models > color #11 #ffaa3f49 models > color #11 #bc7d2e49 models > color #11 #bc60bc49 models > color #11 #bc60bc4a models > volume #5 color #b2b2ffa6 > color #2 #ffffb2ff models > rename #1 cryosparc_P5_J26_class_04_00042_ > rename #1 cryosparc_P5_J26_class_04_00042_pulloutSec63 > rename #2 cryosparc_P8_J16_class_02_00042_60s > rename #3 ""cryosparc_P8_J16_class_03_00042_80s class3"" > rename #5 ""cryosparc_P8_J16_class_00_00042_80s claas 0 flip"" > rename #5 ""cryosparc_P8_J16_class_00_00042_80s class 0 flip"" > rename #10 ""cryosparc_P9_J33_class_02_00062_Apoclass2 flip"" > rename #11 ""cryosparc_P9_J33_class_01_00062_Apoclass1 flip"" > save ""/Users/annguyen/ownCloud - Anh Nguyen@oc.biophys.mpg.de/Chimera > sessions/18-05-25-scSec72-scRibo-10xbin.cxs"" > show #!7 models > open /Users/annguyen/Downloads/cryosparc_P8_J151_class_03_00042_volume.mrc Opened cryosparc_P8_J151_class_03_00042_volume.mrc as #8, grid size 128,128,128, pixel 4.48, shown at level 0.593, step 1, values float32 > open /Users/annguyen/Downloads/cryosparc_P9_J33_class_02_00062_volume.mrc Opened cryosparc_P9_J33_class_02_00062_volume.mrc as #9, grid size 128,128,128, pixel 4.48, shown at level 0.722, step 1, values float32 > close #9 > volume #8 level 0.2279 > volume #8 level 0.1648 > select add #8 3 models selected > view matrix models #8,1,0,0,25.515,0,1,0,-14.045,0,0,1,102.61 > view matrix models #8,1,0,0,18.355,0,1,0,-19.838,0,0,1,91.88 > ui mousemode right ""rotate selected models"" > view matrix models > #8,0.37938,0.91695,-0.12361,-29.995,0.39689,-0.0406,0.91697,-98.949,0.83579,-0.39694,-0.37933,359.98 > ui mousemode right ""translate selected models"" > view matrix models > #8,0.37938,0.91695,-0.12361,-61.442,0.39689,-0.0406,0.91697,14.989,0.83579,-0.39694,-0.37933,54.171 > view matrix models > #8,0.37938,0.91695,-0.12361,-36.197,0.39689,-0.0406,0.91697,2.5165,0.83579,-0.39694,-0.37933,31.453 > ui mousemode right ""rotate selected models"" > view matrix models > #8,0.036868,0.99921,-0.014898,7.9919,0.67085,-0.013697,0.74147,-34.03,0.74068,-0.03733,-0.67082,39.355 > view matrix models > #8,-0.94882,0.27311,0.15857,451.5,0.31516,0.85098,0.42014,-87.218,-0.020202,0.44861,-0.8935,183.67 > fitmap #8 inMap #1 Fit map cryosparc_P8_J151_class_03_00042_volume.mrc in map cryosparc_P5_J26_class_04_00042_pulloutSec63 using 57110 points correlation = 0.9075, correlation about mean = 0.7521, overlap = 2.553e+04 steps = 276, shift = 40.5, angle = 46.5 degrees Position of cryosparc_P8_J151_class_03_00042_volume.mrc (#8) relative to cryosparc_P5_J26_class_04_00042_pulloutSec63 (#1) coordinates: Matrix rotation and translation 0.20479148 -0.69460954 -0.68962161 623.70351191 -0.66458163 0.41858321 -0.61896630 538.62548865 0.71860394 0.58506890 -0.37590248 -0.07139224 Axis 0.64976738 -0.75996036 0.01620481 Axis point 542.11699057 0.00000000 283.13200142 Rotation angle (degrees) 112.10245175 Shift along axis -4.07298061 > hide #!2 models > hide #4 models > hide #!5 models > hide #!7 models > show #!7 models > show #!7 cartoons > hide #!7 surfaces > hide #!8 models > select subtract #8 Nothing selected > show #!8 models > show #!1 models > hide #!8 models > hide #!7 models > hide #!1 models > show #!8 models > show #!7 models > hide #!8 models > hide #!7 models > show #!2 models > hide #!2 models > show #!3 models > color #3 #ab9e40ff models > color #3 #9fab3cff models > color #3 #c5d54bff models > color #3 #50da57ff models > color #3 #7fda72ff models > color #3 #69b45fff models > volume #3 level 0.2145 > show #!2 models > hide #!2 models > volume #3 level 0.2332 > hide #!3 models > show #!5 models > hide #!5 models > show #!1 models > show #!7 models > hide #!7 models > show #!8 models > hide #!1 models > volume #8 color #ffb2b2cb > volume #8 color #ffb2b2cc > show #!7 models > select add #7 1514 atoms, 1534 bonds, 193 residues, 1 model selected > view matrix models > #7,0.67543,-0.5091,-0.53349,415.55,0.72529,0.58932,0.35588,400.3,0.13322,-0.62731,0.76729,163.64 > view matrix models > #7,0.97754,-0.20092,0.063604,411.87,0.14958,0.87407,0.4622,399.91,-0.14846,-0.4423,0.88449,163.06 > view matrix models > #7,0.99023,0.020832,-0.13785,411.29,0.066064,0.80059,0.59556,400.11,0.12277,-0.59885,0.7914,163.47 > ui mousemode right ""translate selected models"" > view matrix models > #7,0.99023,0.020832,-0.13785,422.09,0.066064,0.80059,0.59556,400.38,0.12277,-0.59885,0.7914,163.36 > show #!6 models > hide #!6 models > show #!6 models > view matrix models > #7,0.99023,0.020832,-0.13785,425.37,0.066064,0.80059,0.59556,403.44,0.12277,-0.59885,0.7914,163.61 > ui mousemode right ""rotate selected models"" > view matrix models > #7,0.95885,-0.033813,-0.28188,426.07,-0.17264,0.71878,-0.67346,407.62,0.22539,0.69441,0.68337,157.43 > view matrix models > #7,0.9866,-0.14932,-0.065793,426.01,0.044391,0.63361,-0.77238,407.81,0.15702,0.75911,0.63174,157.4 > view matrix models > #7,0.39768,-0.2338,-0.88724,429.82,0.24593,0.95877,-0.14242,404.18,0.88395,-0.16156,0.43878,160.74 > view matrix models > #7,0.89093,-0.42166,0.16868,426.93,-0.11881,-0.57489,-0.80956,414.09,0.43833,0.70122,-0.56228,160.13 > view matrix models > #7,0.59256,-0.78428,-0.18379,430.24,-0.15962,0.10931,-0.98111,411.32,0.78956,0.6107,-0.060414,158.51 > ui mousemode right ""translate selected models"" > view matrix models > #7,0.59256,-0.78428,-0.18379,432.41,-0.15962,0.10931,-0.98111,408.16,0.78956,0.6107,-0.060414,166.71 > view matrix models > #7,0.59256,-0.78428,-0.18379,430.41,-0.15962,0.10931,-0.98111,405.52,0.78956,0.6107,-0.060414,164.49 > view matrix models > #7,0.59256,-0.78428,-0.18379,428.3,-0.15962,0.10931,-0.98111,411.77,0.78956,0.6107,-0.060414,160.95 > hide #!8 models > show #!1 models > hide #!6 models > hide #!7 models ===== Log before crash end ===== Log: Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.9 (2024-12-11) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 89.4 OpenGL renderer: Apple M2 OpenGL vendor: Apple Python: 3.11.4 Locale: en_US.UTF-8 Qt version: PyQt6 6.7.1, Qt 6.7.1 Qt runtime version: 6.7.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: Mac14,7 Model Number: Z16U000NJD/A Chip: Apple M2 Total Number of Cores: 8 (4 performance and 4 efficiency) Memory: 16 GB System Firmware Version: 11881.101.1 OS Loader Version: 11881.101.1 Software: System Software Overview: System Version: macOS 15.4.1 (24E263) Kernel Version: Darwin 24.4.0 Time since boot: 1 day, 19 hours, 53 minutes Graphics/Displays: Apple M2: Chipset Model: Apple M2 Type: GPU Bus: Built-In Total Number of Cores: 10 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal DELL P3223QE: Resolution: 5120 x 2880 (5K/UHD+ - Ultra High Definition Plus) UI Looks like: 2560 x 1440 @ 60.00Hz Mirror: Off Online: Yes Rotation: Supported Installed Packages: alabaster: 1.0.0 anyio: 4.7.0 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.0 auditwheel: 6.1.0 babel: 2.16.0 beautifulsoup4: 4.12.3 blockdiag: 3.0.0 blosc2: 3.0.0 build: 1.2.1 certifi: 2023.11.17 cftime: 1.6.4.post1 charset-normalizer: 3.4.0 ChimeraX-AddCharge: 1.5.18 ChimeraX-AddH: 2.2.6 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.5 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.16.1 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.58.8 ChimeraX-AtomicLibrary: 14.1.11 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.4.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.4 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.6 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.9 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.4 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2.6 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMalign: 0.1.1 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.3 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.2.1 ChimeraX-Label: 1.1.14 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.6 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.7.2 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.14.2 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.18 ChimeraX-ModelPanel: 1.5 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.14 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.6 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.2 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.2 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.6 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.14 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.0 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.18.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.41 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.4 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.3.1 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.0.10 debugpy: 1.8.9 decorator: 5.1.1 docutils: 0.21.2 executing: 2.1.0 filelock: 3.15.4 finufft: 2.3.1 fonttools: 4.55.3 funcparserlib: 2.0.0a0 glfw: 2.8.0 grako: 3.16.5 h11: 0.14.0 h5py: 3.12.1 html2text: 2024.2.26 httpcore: 1.0.7 httpx: 0.28.1 idna: 3.10 ihm: 1.3 imagecodecs: 2024.6.1 imagesize: 1.4.1 ipykernel: 6.29.5 ipython: 8.26.0 ipywidgets: 8.1.5 jedi: 0.19.1 Jinja2: 3.1.4 jupyter_client: 8.6.2 jupyter_core: 5.7.2 jupyterlab_widgets: 3.0.13 kiwisolver: 1.4.7 line_profiler: 4.1.3 lxml: 5.2.2 lz4: 4.3.3 MarkupSafe: 3.0.2 matplotlib: 3.9.2 matplotlib-inline: 0.1.7 msgpack: 1.0.8 ndindex: 1.9.2 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.10.2 numpy: 1.26.4 openvr: 1.26.701 packaging: 23.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pexpect: 4.9.0 pillow: 10.4.0 pip: 24.2 pkginfo: 1.11.1 platformdirs: 4.3.6 prompt_toolkit: 3.0.48 psutil: 6.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 pyelftools: 0.31 Pygments: 2.18.0 pynmrstar: 3.3.4 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.3401 pyparsing: 3.2.0 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.7.1 PyQt6-Qt6: 6.7.3 PyQt6-WebEngine-commercial: 6.7.0 PyQt6-WebEngine-Qt6: 6.7.3 PyQt6-WebEngineSubwheel-Qt6: 6.7.3 PyQt6_sip: 13.8.0 python-dateutil: 2.9.0.post0 pytz: 2024.2 pyzmq: 26.2.0 qtconsole: 5.5.2 QtPy: 2.4.2 qtshim: 1.0 RandomWords: 0.4.0 requests: 2.32.3 scipy: 1.14.0 setuptools: 72.1.0 sfftk-rw: 0.8.1 six: 1.16.0 sniffio: 1.3.1 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.6 Sphinx: 8.0.2 sphinx-autodoc-typehints: 2.2.3 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 stack-data: 0.6.3 superqt: 0.6.3 tables: 3.10.1 tcia_utils: 1.5.1 tifffile: 2024.7.24 tinyarray: 1.2.4 tornado: 6.4.2 traitlets: 5.14.3 typing_extensions: 4.12.2 tzdata: 2024.2 urllib3: 2.2.3 wcwidth: 0.2.13 webcolors: 24.6.0 wheel: 0.43.0 wheel-filename: 1.4.1 widgetsnbextension: 4.0.13 }}} " defect closed normal Window Toolkit duplicate all ChimeraX