id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 17747 Unknown crash chimerax-bug-report@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: macOS-15.5-arm64-arm-64bit ChimeraX Version: 1.10rc202505090204 (2025-05-09 02:04:01 UTC) Description Last time you used ChimeraX it crashed. 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swapped_out_or_unallocated=1.9G(100%)\nWritable regions: Total=3.8G written=43.4M(1%) resident=2099K(0%) swapped_out=41.3M(1%) unallocated=3.8G(99%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 256K 2 \nActivity Tracing 256K 1 \nCG image 1136K 41 \nColorSync 656K 33 \nCoreAnimation 2864K 139 \nCoreGraphics 64K 4 \nCoreUI image data 5296K 40 \nFoundation 16K 1 \nKernel Alloc Once 32K 1 \nMALLOC 3.2G 124 \nMALLOC guard page 288K 18 \nMach message 64K 2 \nOpenGL GLSL 384K 4 \nSTACK GUARD 56.6M 41 \nStack 216.9M 41 \nVM_ALLOCATE 204.0M 185 \nVM_ALLOCATE (reserved) 224.0M 1 reserved VM address space (unallocated)\n__AUTH 5446K 693 \n__AUTH_CONST 76.9M 940 \n__CTF 824 1 \n__DATA 36.9M 1067 \n__DATA_CONST 36.9M 1084 \n__DATA_DIRTY 2777K 341 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__INFO_FILTER 8 1 \n__LINKEDIT 645.5M 138 \n__OBJC_RO 61.4M 1 \n__OBJC_RW 2396K 1 \n__TEXT 1.3G 1080 \n__TEXT (graphics) 20.2M 24 \n__TPRO_CONST 128K 2 \ndyld private memory 432K 5 \nmapped file 356.7M 73 \npage table in kernel 2099K 1 \nshared memory 3312K 27 \n=========== ======= ======= \nTOTAL 6.4G 6159 \nTOTAL, minus reserved VM space 6.2G 6159 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""logWritingSignature"" : ""dc5b1a952d8ffd5b31c0b07f65a8c78f628cca58"", ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""64c025b28b7f0e739e4fbe58"", ""factorPackIds"" : { ""SIRI_UNDERSTANDING_CLASSIC_DEPRECATION"" : ""657ba0a39ec5da283662e9d2"" }, ""deploymentId"" : 240000040 }, { ""rolloutId"" : ""648cada15dbc71671bb3aa1b"", ""factorPackIds"" : { ""SIRI_EXPERIENCE_CAM"" : ""65a81173096f6a1f1ba46525"" }, ""deploymentId"" : 240000116 } ], ""experiments"" : [ { ""treatmentId"" : ""d7ff00dd-1c5a-4dbb-85d6-7a936d671384"", ""experimentId"" : ""67f46bbc84eaf455d73c6098"", ""deploymentId"" : 400000001 } ] } } ===== Log before crash start ===== UCSF ChimeraX version: 1.10rc202505090204 (2025-05-09) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/chenmeizi/Desktop/AD Liquid Biopdy/Data/Autodock-chimeraX- > PDB/Autodock/AIE- from tb.pdb"" > ui tool show Boltz > toolshed show > ui tool show ""Find Cavities"" > kvfinder 0 cavities found for AIE- from tb.pdb #1 > view orient > volume region all imageMode ""full region"" No volumes specified > close > open ""/Users/chenmeizi/Desktop/AD Liquid Biopdy/Data/PDB/Autodock/DNA- > results.pdb"" format pdb No such file/path: /Users/chenmeizi/Desktop/AD Liquid Biopdy/Data/PDB/Autodock/DNA-results.pdb > open ""/Users/chenmeizi/Desktop/AD Liquid Biopdy/Data/Autodock-chimeraX- > PDB/ChimeraX/bind-2.pdb"" format pdb Chain information for bind-2.pdb #1 --- Chain | Description A | No description available B | No description available C | No description available D | No description available Computing secondary structure > color bychain > color bypolymer > select ::name=""UNK"" 1005 atoms, 1065 bonds, 1 residue, 1 model selected > ui tool show H-Bonds > hbonds sel color #ff2600 radius 0.085 dashes 6 showDist true distSlop 0.5 > angleSlop 25.0 twoColors true reveal true retainCurrent true log true Finding intermodel H-bonds Finding intramodel H-bonds Constraints relaxed by 0.5 angstroms and 25 degrees Models used: 1 bind-2.pdb 12 H-bonds H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist): /? UNK 900 O10 /C DC 34 O3' /? UNK 900 H71 3.268 2.392 /? UNK 900 O13 /A DC 53 O4' /? UNK 900 H61 3.321 2.727 /? UNK 900 O14 /C DT 8 O2 /? UNK 900 H91 2.981 2.036 /? UNK 900 O15 /C DA 20 O4' /? UNK 900 H21 2.767 2.113 /? UNK 900 O2 /D DG 10 OP2 /? UNK 900 H31 2.536 1.560 /? UNK 900 O3 /D DC 31 O4' /? UNK 900 H61 2.830 1.984 /? UNK 900 O6 /D DC 60 OP2 /? UNK 900 H51 2.792 1.885 /? UNK 900 O7 /D DA 43 OP2 /? UNK 900 H81 2.488 1.522 /? UNK 900 O9 /B DT 26 O2 /? UNK 900 H41 2.913 2.046 /C DG 47 N2 /? UNK 900 O4 /C DG 47 H2_1 3.065 2.163 /D DG 30 N2 /? UNK 900 O3 /D DG 30 H2_1 2.938 1.940 /D DG 49 N2 /? UNK 900 O8 /D DG 49 H2_1 2.827 2.118 12 hydrogen bonds found 7 strict hydrogen bonds found > hbonds sel color #ff2600 radius 0.085 dashes 6 showDist true distSlop 0.6 > angleSlop 25.0 twoColors true reveal true retainCurrent true log true Finding intermodel H-bonds Finding intramodel H-bonds Constraints relaxed by 0.6 angstroms and 25 degrees Models used: 1 bind-2.pdb 16 H-bonds H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist): /? UNK 900 O10 /C DC 34 O3' /? UNK 900 H71 3.268 2.392 /? UNK 900 O13 /A DC 53 O4' /? UNK 900 H61 3.321 2.727 /? UNK 900 O14 /C DT 8 O2 /? UNK 900 H91 2.981 2.036 /? UNK 900 O15 /C DA 20 O4' /? UNK 900 H21 2.767 2.113 /? UNK 900 O2 /D DG 10 OP2 /? UNK 900 H31 2.536 1.560 /? UNK 900 O3 /D DC 31 O4' /? UNK 900 H61 2.830 1.984 /? UNK 900 O4 /C DA 48 O4' /? UNK 900 H91 3.567 2.955 /? UNK 900 O5 /C DT 55 O3' /? UNK 900 H21 3.561 2.628 /? UNK 900 O6 /D DC 60 OP2 /? UNK 900 H51 2.792 1.885 /? UNK 900 O7 /D DA 43 OP2 /? UNK 900 H81 2.488 1.522 /? UNK 900 O8 /C DC 58 O2 /? UNK 900 H11 3.732 3.110 /? UNK 900 O9 /B DT 26 O2 /? UNK 900 H41 2.913 2.046 /? UNK 900 O9 /C DT 40 O2 /? UNK 900 H41 3.679 3.246 /C DG 47 N2 /? UNK 900 O4 /C DG 47 H2_1 3.065 2.163 /D DG 30 N2 /? UNK 900 O3 /D DG 30 H2_1 2.938 1.940 /D DG 49 N2 /? UNK 900 O8 /D DG 49 H2_1 2.827 2.118 16 hydrogen bonds found 7 strict hydrogen bonds found > hbonds sel color #ff2600 radius 0.085 dashes 6 showDist true distSlop 0.6 > angleSlop 25.0 twoColors true reveal true retainCurrent true log true Finding intermodel H-bonds Finding intramodel H-bonds Constraints relaxed by 0.6 angstroms and 25 degrees Models used: 1 bind-2.pdb 16 H-bonds H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist): /? UNK 900 O10 /C DC 34 O3' /? UNK 900 H71 3.268 2.392 /? UNK 900 O13 /A DC 53 O4' /? UNK 900 H61 3.321 2.727 /? UNK 900 O14 /C DT 8 O2 /? UNK 900 H91 2.981 2.036 /? UNK 900 O15 /C DA 20 O4' /? UNK 900 H21 2.767 2.113 /? UNK 900 O2 /D DG 10 OP2 /? UNK 900 H31 2.536 1.560 /? UNK 900 O3 /D DC 31 O4' /? UNK 900 H61 2.830 1.984 /? UNK 900 O4 /C DA 48 O4' /? UNK 900 H91 3.567 2.955 /? UNK 900 O5 /C DT 55 O3' /? UNK 900 H21 3.561 2.628 /? UNK 900 O6 /D DC 60 OP2 /? UNK 900 H51 2.792 1.885 /? UNK 900 O7 /D DA 43 OP2 /? UNK 900 H81 2.488 1.522 /? UNK 900 O8 /C DC 58 O2 /? UNK 900 H11 3.732 3.110 /? UNK 900 O9 /B DT 26 O2 /? UNK 900 H41 2.913 2.046 /? UNK 900 O9 /C DT 40 O2 /? UNK 900 H41 3.679 3.246 /C DG 47 N2 /? UNK 900 O4 /C DG 47 H2_1 3.065 2.163 /D DG 30 N2 /? UNK 900 O3 /D DG 30 H2_1 2.938 1.940 /D DG 49 N2 /? UNK 900 O8 /D DG 49 H2_1 2.827 2.118 16 hydrogen bonds found 7 strict hydrogen bonds found > set bgColor white > lighting soft > lighting full > lighting simple > lighting shadows true > graphics silhouettes true > select add #1 9018 atoms, 9710 bonds, 16 pseudobonds, 253 residues, 3 models selected > select subtract #1 Nothing selected > show surfaces > select nucleic-acid 8013 atoms, 8645 bonds, 252 residues, 1 model selected > transparency (#!1 & sel) 60 > select add #1 9018 atoms, 9710 bonds, 16 pseudobonds, 253 residues, 7 models selected > select subtract #1 4 models selected > lighting simple > lighting soft > lighting full > lighting flat > lighting shadows true intensity 0.5 > lighting shadows false > graphics silhouettes false > graphics silhouettes true > lighting shadows true > lighting shadows false > lighting shadows true > lighting flat > hide surfaces > select /D 2001 atoms, 2156 bonds, 63 residues, 1 model selected > ui tool show ""Color Actions"" > color sel yellow > color sel khaki > color sel pale goldenrod > color sel bisque > color sel moccasin > color sel dark green > color sel antique white > color sel linen > color sel light goldenrod yellow > color sel khaki > color sel pale goldenrod > color sel pale turquoise > color sel dark sea green > color sel dim gray > color sel gray > color sel burly wood > color sel tan > color sel light salmon > color sel orange > color sel peach puff > color sel navajo white > color sel moccasin > color sel bisque > color sel misty rose > color sel pink > color sel navajo white > color sel moccasin > color sel navajo white > color sel moccasin > color sel bisque > select subtract #1.5 1 model selected > select add #1.3 2004 atoms, 63 residues, 1 model selected > ui tool show ""Color Actions"" > color sel pink > color sel thistle > color sel pink > select subtract #1.3 1 model selected > select add #1.2 1999 atoms, 63 residues, 1 model selected > ui tool show ""Color Actions"" > color sel light green > color sel aquamarine > color sel pale turquoise > color sel light cyan > color sel lavender > color sel medium spring green > color sel medium aquamarine > color sel teal > color sel lime > color sel light green > color sel pale green > color sel aquamarine > color sel pale green > color sel pale turquoise > color sel powder blue > color sel light steel blue > color sel aquamarine > color sel pale green > color sel aquamarine > color sel medium aquamarine > color sel light sea green > color sel turquoise > color sel teal > color sel steel blue > color sel aquamarine > color sel pale turquoise > color sel light blue > color sel light sky blue > color sel light blue > color sel powder blue > color sel sky blue > color sel pale green > color sel aquamarine > color sel sky blue > color sel light sky blue > color sel light steel blue > color sel pale turquoise > color sel light blue > color sel powder blue > color sel silver > color sel powder blue > color sel silver > color sel dark slate gray > color sel dim gray > color sel gray > color sel plum > color sel dim gray > color sel gray > select subtract #1.2 1 model selected > select add #1.4 2009 atoms, 63 residues, 1 model selected > ui tool show ""Color Actions"" > color sel pale turquoise > color sel light blue > color sel sky blue > color sel light steel blue > color sel medium slate blue > color sel light steel blue > color sel lavender > color sel cornflower blue > color sel sky blue > color sel aquamarine > color sel burly wood > color sel pale turquoise > color sel light steel blue > color sel powder blue > color sel light steel blue > select subtract #1.4 1 model selected > select ::name=""UNK"" 1005 atoms, 1065 bonds, 1 residue, 1 model selected > style sel sphere Changed 1005 atom styles > style sel sphere Changed 1005 atom styles > style sel stick Changed 1005 atom styles > style sel ball Changed 1005 atom styles > style sel stick Changed 1005 atom styles > ui tool show ""Color Actions"" > color sel khaki > color sel gold > color sel lime > color sel medium spring green > color sel dark turquoise > color sel medium spring green > color sel lime > color sel chartreuse > color sel lawn green > color sel spring green > color sel medium spring green > color sel green yellow > color sel medium spring green > color sel yellow green > color sel medium spring green > select add #1 9018 atoms, 9710 bonds, 16 pseudobonds, 253 residues, 3 models selected > select subtract #1 4 models selected > select ::name=""UNK"" 1005 atoms, 1065 bonds, 1 residue, 1 model selected ===== Log before crash end ===== Log: UCSF ChimeraX version: 1.10rc202505090204 (2025-05-09) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 89.4 OpenGL renderer: Apple M4 OpenGL vendor: Apple Python: 3.11.4 Locale: en_US.UTF-8 Qt version: PyQt6 6.8.1, Qt 6.8.2 Qt runtime version: 6.8.2 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: Mac16,1 Model Number: MW2X3LL/A Chip: Apple M4 Total Number of Cores: 10 (4 performance and 6 efficiency) Memory: 16 GB System Firmware Version: 11881.121.1 OS Loader Version: 11881.121.1 Software: System Software Overview: System Version: macOS 15.5 (24F74) Kernel Version: Darwin 24.5.0 Time since boot: 10 hours, 57 minutes Graphics/Displays: Apple M4: Chipset Model: Apple M4 Type: GPU Bus: Built-In Total Number of Cores: 10 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-in Liquid Retina XDR Display Resolution: 3024 x 1964 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: alabaster: 1.0.0 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.0 auditwheel: 6.3.0 babel: 2.17.0 beautifulsoup4: 4.13.3 blockdiag: 3.0.0 blosc2: 3.3.2 build: 1.2.2.post1 certifi: 2023.11.17 cftime: 1.6.4.post1 charset-normalizer: 3.4.2 ChimeraX-AddCharge: 1.5.18 ChimeraX-AddH: 2.2.7 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.6.1 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.20.1 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Aniso: 1.1.3 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.60.5 ChimeraX-AtomicLibrary: 14.1.18 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.3 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-Boltz: 1.0 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.5.1 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.5 ChimeraX-ChemGroup: 2.0.2 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.2.6 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.10rc202505090204 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.5 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.4 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.4 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5.1 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.3 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.6.2 ChimeraX-Label: 1.1.14 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.2.1 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.10.1 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.16 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.19 ChimeraX-ModelPanel: 1.5.1 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.14.1 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.10 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.3 ChimeraX-ProfileGrids: 1.1.2 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.3 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.3 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.7 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.17.1 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.0 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.2 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.45.1 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.5 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.3.2 coverage: 7.8.0 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.0.12 debugpy: 1.8.14 decorator: 5.2.1 docutils: 0.21.2 executing: 2.2.0 filelock: 3.18.0 fonttools: 4.57.0 funcparserlib: 2.0.0a0 glfw: 2.9.0 grako: 3.16.5 h5py: 3.13.0 html2text: 2024.2.26 idna: 3.10 ihm: 2.2 imagecodecs: 2024.6.1 imagesize: 1.4.1 iniconfig: 2.1.0 ipykernel: 6.29.5 ipython: 8.26.0 ipywidgets: 8.1.7 jedi: 0.19.1 Jinja2: 3.1.6 jupyter_client: 8.6.3 jupyter_core: 5.7.2 jupyterlab_widgets: 3.0.15 kiwisolver: 1.4.8 line_profiler: 4.2.0 lxml: 5.3.1 lz4: 4.4.4 MarkupSafe: 3.0.2 matplotlib: 3.10.1 matplotlib-inline: 0.1.7 msgpack: 1.1.0 narwhals: 1.39.0 ndindex: 1.9.2 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.10.2 numpy: 2.2.5 numpy: 1.26.4 OpenMM: 8.2.0 openvr: 1.26.701 packaging: 24.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 10.4.0 pip: 25.0.1 pkginfo: 1.11.1 platformdirs: 4.3.8 plotly: 6.0.1 pluggy: 1.5.0 prompt_toolkit: 3.0.51 psutil: 7.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 pyelftools: 0.32 Pygments: 2.18.0 pyKVFinder: 0.8.0 pynmrstar: 3.3.5 pynrrd: 1.0.0 PyOpenGL: 3.1.9 PyOpenGL-accelerate: 3.1.9 pyopenxr: 1.1.4501 pyparsing: 3.2.3 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.8.1 PyQt6-Qt6: 6.8.2 PyQt6-WebEngine-commercial: 6.8.0 PyQt6-WebEngine-Qt6: 6.8.2 PyQt6_sip: 13.10.0 pytest: 8.3.5 pytest-cov: 6.1.1 python-dateutil: 2.9.0.post0 pytz: 2025.2 pyzmq: 26.4.0 qtconsole: 5.5.2 QtPy: 2.4.3 qtshim: 1.1 RandomWords: 0.4.0 requests: 2.32.3 roman-numerals-py: 3.1.0 scipy: 1.14.0 setuptools: 78.1.0 sfftk-rw: 0.8.1 six: 1.16.0 snowballstemmer: 3.0.0.1 sortedcontainers: 2.4.0 soupsieve: 2.7 Sphinx: 8.2.3 sphinx-autodoc-typehints: 3.1.0 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 stack-data: 0.6.3 superqt: 0.7.1 tables: 3.10.2 tcia_utils: 1.5.1 tifffile: 2025.3.13 tinyarray: 1.2.4 tomlkit: 0.13.2 tornado: 6.4.2 traitlets: 5.14.3 typing_extensions: 4.13.2 tzdata: 2025.2 urllib3: 2.4.0 wcwidth: 0.2.13 webcolors: 24.11.1 wheel: 0.45.1 wheel-filename: 1.4.2 widgetsnbextension: 4.0.14 }}} " defect closed normal Platform can't reproduce Tom Goddard all ChimeraX