id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 17663 Graphics hardware encountered an error and was reset: glander@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-15.4.1-x86_64-i386-64bit ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC) Description Last time you used ChimeraX it crashed. This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. This is an Apple Intel or AMD graphics driver crash that may be related to showing a scene that is complex and uses too much graphics memory. Apple is unlikely to ever fix this since they no longer make computers with Intel or AMD graphics. The crash does not happen with Apple M1,M2,M3... graphics. Fatal Python error: Aborted Current thread 0x00007ff84995cbc0 (most recent call first): File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 248 in swap_buffers File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/opengl.py"", line 561 in swap_buffers File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/graphics/view.py"", line 202 in draw File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py"", line 84 in draw_new_frame File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/updateloop.py"", line 150 in _redraw_timer_callback File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 330 in event_loop File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1054 in init File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1217 in File """", line 88 in _run_code File """", line 198 in _run_module_as_main Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, 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""SIRI_EXPERIENCE_CAM"" : ""65a81173096f6a1f1ba46525"" }, ""deploymentId"" : 240000116 } ], ""experiments"" : [ { ""treatmentId"" : ""4c25da6c-cb8d-40eb-9b62-a1230e80ce69"", ""experimentId"" : ""67f469f384eaf455d73c6092"", ""deploymentId"" : 400000001 }, { ""treatmentId"" : ""6e89813a-8d44-4c5e-ad3c-6f2ddeaf1e01"", ""experimentId"" : ""673c272726c1270f5a9ef58e"", ""deploymentId"" : 400000015 } ] } } ===== Log before crash start ===== Startup Messages --- note | available bundle cache has not been initialized yet > camera ortho > set bgColor white > graphics silhouettes true > lighting soft > ui mousemode right ""translate selected models"" > cofr centerOfView > volume defaultvalues limitVoxelCount false voxelLimitForPlane > 1000000000000000 voxelLimitForOpen 1000000000000000 saveSettings true Saved volume settings > alias cofron cofr centerofview showpivot 7,0.25 > alias cofroff cofr centerofview showpivot false > alias symclip cofr centerofview; clip near -$1 far $1 position cofr > alias cootmode set bgColor black; surface cap false; surface style solid; > lighting flat; graphics silhouettes false; style stick; ~rib; color > ##num_residues gold; color byhet ; disp; ~disp @H*; style ions ball; style > solvent ball; size ballscale 0.2; size stickradius 0.07; transparency 70; > cofr centerofview; clip near -10 far 10 position cofr; color ~##num_residues > cornflower blue > alias cootmode_mesh surface cap false; surface style mesh; lighting flat; > graphics silhouettes false; style stick; ~rib; color ##num_residues gold; > color byhet ; disp; ~disp @H*; style solvent ball; style ions ball; size > ballscale 0.2; size stickradius 0.07; cofr centerofview; clip near -10 far > 10 position cofr; color ~##num_residues #3d60ffff; transparency 50 > alias ca_and_sidechains ~rib $1; ~surf $1; ~disp $1; disp @CA&protein&$1; > disp @P&nucleic&$1; style $1 stick; disp sidechain&$1; disp > ~backbone&nucleic&$1; size stickradius 0.1; size pseudobondradius 0.1 > alias ca_trace ~rib $1; ~surf $1; ~disp $1; disp @CA&protein&$1; disp > @P&nucleic&$1; style $1 stick; size stickradius 0.1; size pseudobondradius > 0.1 > alias map_sphere_15 volume unzone all; sel; close #10000; marker #10000 > position cofr; sel ~sel; volume zone ~##num_residues nearAtoms sel > minimalBounds true range 15; close #10000 > alias map_unsphere volume unzone ~##num_residues > alias default_mol_display ~disp; rib; rainbow chain palette RdYlBu-5; > lighting soft > alias hidemaps surface unzone all; sel; close #10000; marker #10000 position > cofr; sel ~sel; surface zone ~##num_residues nearAtoms sel distance 0; close > #10000 > alias showmaps surface unzone ~##num_residues > alias caps_off surface cap false > alias caps_on surface cap true > alias selbetween ks ri > buttonpanel Shortcuts rows 3 columns 5 > buttonpanel Shortcuts add VolView command ""tool show 'Volume Viewer'"" > buttonpanel Shortcuts add ModelPanel command ""tool show Models"" > buttonpanel Shortcuts add Log command ""tool show Log"" > buttonpanel Shortcuts add DefaultDisp command default_mol_display > buttonpanel Shortcuts add MapSphere command map_sphere_15 > buttonpanel Shortcuts add MapUnSphere command map_unsphere > buttonpanel Shortcuts add cofron command cofron > buttonpanel Shortcuts add cofroff command cofroff > buttonpanel Shortcuts add cootmode command cootmode > buttonpanel Shortcuts add mark_cofr command ""marker #20000 position cofr > radius 1"" > buttonpanel Shortcuts add hidemaps command hidemaps > buttonpanel Shortcuts add showmaps command showmaps UCSF ChimeraX version: 1.9 (2024-12-11) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/glander/Scripps Research Dropbox/Gabriel Lander/Manuscripts- > InProg/2025-ACB manuscript shared folder/0. DensitiesAndModels/Maps/0. final > models/2. IKZF1_with_DEG_and_ACB_FINAL.pdb"" Chain information for 2. IKZF1_with_DEG_and_ACB_FINAL.pdb #1 --- Chain | Description A | No description available C | No description available > open ""/Users/glander/Scripps Research Dropbox/Gabriel Lander/Manuscripts- > InProg/2025-ACB manuscript shared folder/0. DensitiesAndModels/Maps/0. final > models/2a. Ikzf1_with_DEG_and_ACB.mrc"" Opened 2a. Ikzf1_with_DEG_and_ACB.mrc as #2, grid size 443,443,443, pixel 0.5, shown at level 2.59, step 1, values float32 > volume #2 level 4.258 > volume #2 level 2.157 > volume #2 level 11.21 > open ""/Users/glander/Scripps Research Dropbox/Gabriel Lander/Manuscripts- > InProg/2025-ACB manuscript shared folder/0. DensitiesAndModels/Maps/0. final > models/1a. Ikzf1_with_DEG.mrc"" Opened 1a. Ikzf1_with_DEG.mrc as #3, grid size 443,443,443, pixel 0.5, shown at level 2.31, step 1, values float32 > volume #3 level 6.579 > tool show Models > molmap #1 5 Opened 2. IKZF1_with_DEG_and_ACB_FINAL.pdb map 5 as #4, grid size 68,82,70, pixel 1.67, shown at level 0.0973, step 1, values float32 > close #4 > molmap #1/B 5 Opened 2. IKZF1_with_DEG_and_ACB_FINAL.pdb map 5 as #4, grid size 23,24,26, pixel 1.67, shown at level 0.0383, step 1, values float32 > close #4 > molmap #1/C 5 Opened 2. IKZF1_with_DEG_and_ACB_FINAL.pdb map 5 as #4, grid size 55,61,50, pixel 1.67, shown at level 0.091, step 1, values float32 > fitmap #3 inMap #4 Fit map 1a. Ikzf1_with_DEG.mrc in map 2. IKZF1_with_DEG_and_ACB_FINAL.pdb map 5 using 452939 points correlation = 0.5646, correlation about mean = 0.1282, overlap = 9.987e+05 steps = 96, shift = 0.562, angle = 3.7 degrees Position of 1a. Ikzf1_with_DEG.mrc (#3) relative to 2. IKZF1_with_DEG_and_ACB_FINAL.pdb map 5 (#4) coordinates: Matrix rotation and translation 0.99937151 0.02653510 0.02350467 -6.38973169 -0.02522867 0.99820944 -0.05423499 9.55132667 -0.02490172 0.05360791 0.99825152 -3.80352518 Axis 0.83569631 0.37511083 -0.40112785 Axis point 0.00000000 78.39386343 175.12211962 Rotation angle (degrees) 3.69945317 Shift along axis -0.23136926 > close #4 > volume #3 level 21.51 > volume #2 level 2.447 > volume #3 level 7.788 > volume #3 color #ffffb223 > volume #2 level 1.577 > volume #3 level 2.952 > fitmap #3 inMap #2 Fit map 1a. Ikzf1_with_DEG.mrc in map 2a. Ikzf1_with_DEG_and_ACB.mrc using 770205 points correlation = 0.9171, correlation about mean = 0.7099, overlap = 8.443e+07 steps = 76, shift = 0.693, angle = 2.84 degrees Position of 1a. Ikzf1_with_DEG.mrc (#3) relative to 2a. Ikzf1_with_DEG_and_ACB.mrc (#2) coordinates: Matrix rotation and translation 0.99992306 0.00968774 0.00774772 -2.41723639 -0.00960868 0.99990204 -0.01017753 2.26818786 -0.00784556 0.01010231 0.99991819 -0.62905482 Axis 0.63288843 0.48663123 -0.60219788 Axis point 0.00000000 66.90308407 224.47771142 Rotation angle (degrees) 0.91801248 Shift along axis -0.04725441 > molmap #1/C 5 Opened 2. IKZF1_with_DEG_and_ACB_FINAL.pdb map 5 as #4, grid size 55,61,50, pixel 1.67, shown at level 0.091, step 1, values float32 > fitmap #3 inMap #4 Fit map 1a. Ikzf1_with_DEG.mrc in map 2. IKZF1_with_DEG_and_ACB_FINAL.pdb map 5 using 770205 points correlation = 0.5425, correlation about mean = 0.1587, overlap = 1.16e+06 steps = 464, shift = 0.673, angle = 2.8 degrees Position of 1a. Ikzf1_with_DEG.mrc (#3) relative to 2. IKZF1_with_DEG_and_ACB_FINAL.pdb map 5 (#4) coordinates: Matrix rotation and translation 0.99937787 0.02592850 0.02390794 -6.37647211 -0.02461722 0.99825903 -0.05359954 9.38938752 -0.02525607 0.05297764 0.99827626 -3.69204670 Axis 0.83399280 0.38472049 -0.39553274 Axis point 0.00000000 77.19763306 174.42999488 Rotation angle (degrees) 3.66345206 Shift along axis -0.24531671 > hide #!4 models > volume #3 level 7.582 > color #2 #b2b2b276 models > color #2 #b2b2b275 models > open ""/Users/glander/Scripps Research Dropbox/Gabriel Lander/Manuscripts- > InProg/2025-ACB manuscript shared folder/0. DensitiesAndModels/Maps/0. final > models/1. IKZF1_with_DEG_FINAL.pdb"" Chain information for 1. IKZF1_with_DEG_FINAL.pdb #5 --- Chain | Description A | No description available B | No description available C | No description available > tool show Models > fitmap #5 inMap #3 Fit molecule 1. IKZF1_with_DEG_FINAL.pdb (#5) to map 1a. Ikzf1_with_DEG.mrc (#3) using 9639 atoms average map value = 16.83, steps = 92 shifted from previous position = 0.602 rotated from previous position = 3.66 degrees atoms outside contour = 1042, contour level = 7.5818 Position of 1. IKZF1_with_DEG_FINAL.pdb (#5) relative to 1a. Ikzf1_with_DEG.mrc (#3) coordinates: Matrix rotation and translation 1.00000000 -0.00007152 0.00004940 0.00597490 0.00007152 1.00000000 -0.00000604 -0.00856355 -0.00004940 0.00000604 1.00000000 -0.00132494 Axis 0.06929196 0.56694589 0.82083554 Axis point 75.91516038 88.89600540 0.00000000 Rotation angle (degrees) 0.00499213 Shift along axis -0.00552861 > hide #!2 models > hide #!1 models > hide #!3 models > hide #!5 models > close #4 > show #!3 models > show #!2 models > show #!1 models > hide #!3 models > volume #2 level 5.49 > volume #2 level 4.403 ===== Log before crash end ===== Log: Startup Messages --- note | available bundle cache has not been initialized yet > camera ortho > set bgColor white > graphics silhouettes true > lighting soft > ui mousemode right ""translate selected models"" > cofr centerOfView > volume defaultvalues limitVoxelCount false voxelLimitForPlane > 1000000000000000 voxelLimitForOpen 1000000000000000 saveSettings true Saved volume settings > alias cofron cofr centerofview showpivot 7,0.25 > alias cofroff cofr centerofview showpivot false > alias symclip cofr centerofview; clip near -$1 far $1 position cofr > alias cootmode set bgColor black; surface cap false; surface style solid; > lighting flat; graphics silhouettes false; style stick; ~rib; color > ##num_residues gold; color byhet ; disp; ~disp @H*; style ions ball; style > solvent ball; size ballscale 0.2; size stickradius 0.07; transparency 70; > cofr centerofview; clip near -10 far 10 position cofr; color ~##num_residues > cornflower blue > alias cootmode_mesh surface cap false; surface style mesh; lighting flat; > graphics silhouettes false; style stick; ~rib; color ##num_residues gold; > color byhet ; disp; ~disp @H*; style solvent ball; style ions ball; size > ballscale 0.2; size stickradius 0.07; cofr centerofview; clip near -10 far > 10 position cofr; color ~##num_residues #3d60ffff; transparency 50 > alias ca_and_sidechains ~rib $1; ~surf $1; ~disp $1; disp @CA&protein&$1; > disp @P&nucleic&$1; style $1 stick; disp sidechain&$1; disp > ~backbone&nucleic&$1; size stickradius 0.1; size pseudobondradius 0.1 > alias ca_trace ~rib $1; ~surf $1; ~disp $1; disp @CA&protein&$1; disp > @P&nucleic&$1; style $1 stick; size stickradius 0.1; size pseudobondradius > 0.1 > alias map_sphere_15 volume unzone all; sel; close #10000; marker #10000 > position cofr; sel ~sel; volume zone ~##num_residues nearAtoms sel > minimalBounds true range 15; close #10000 > alias map_unsphere volume unzone ~##num_residues > alias default_mol_display ~disp; rib; rainbow chain palette RdYlBu-5; > lighting soft > alias hidemaps surface unzone all; sel; close #10000; marker #10000 position > cofr; sel ~sel; surface zone ~##num_residues nearAtoms sel distance 0; close > #10000 > alias showmaps surface unzone ~##num_residues > alias caps_off surface cap false > alias caps_on surface cap true > alias selbetween ks ri > buttonpanel Shortcuts rows 3 columns 5 > buttonpanel Shortcuts add VolView command ""tool show 'Volume Viewer'"" > buttonpanel Shortcuts add ModelPanel command ""tool show Models"" > buttonpanel Shortcuts add Log command ""tool show Log"" > buttonpanel Shortcuts add DefaultDisp command default_mol_display > buttonpanel Shortcuts add MapSphere command map_sphere_15 > buttonpanel Shortcuts add MapUnSphere command map_unsphere > buttonpanel Shortcuts add cofron command cofron > buttonpanel Shortcuts add cofroff command cofroff > buttonpanel Shortcuts add cootmode command cootmode > buttonpanel Shortcuts add mark_cofr command ""marker #20000 position cofr > radius 1"" > buttonpanel Shortcuts add hidemaps command hidemaps > buttonpanel Shortcuts add showmaps command showmaps UCSF ChimeraX version: 1.9 (2024-12-11) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/glander/Scripps Research Dropbox/Gabriel Lander/Manuscripts- > InProg/2025-ACB manuscript shared folder/0. DensitiesAndModels/Maps/0. final > models/1. IKZF1_with_DEG_FINAL.pdb"" Chain information for 1. IKZF1_with_DEG_FINAL.pdb #1 --- Chain | Description A | No description available B | No description available C | No description available > open ""/Users/glander/Scripps Research Dropbox/Gabriel Lander/Manuscripts- > InProg/2025-ACB manuscript shared folder/0. DensitiesAndModels/Maps/0. final > models/1a. Ikzf1_with_DEG.mrc"" Opened 1a. Ikzf1_with_DEG.mrc as #2, grid size 443,443,443, pixel 0.5, shown at level 2.31, step 1, values float32 OpenGL version: 4.1 ATI-7.0.3 OpenGL renderer: AMD Radeon Pro Vega 64X OpenGL Engine OpenGL vendor: ATI Technologies Inc. Python: 3.11.4 Locale: en_US.UTF-8 Qt version: PyQt6 6.7.1, Qt 6.7.1 Qt runtime version: 6.7.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: iMac Pro Model Identifier: iMacPro1,1 Processor Name: 18-Core Intel Xeon W Processor Speed: 2.3 GHz Number of Processors: 1 Total Number of Cores: 18 L2 Cache (per Core): 1 MB L3 Cache: 24.8 MB Hyper-Threading Technology: Enabled Memory: 256 GB System Firmware Version: 2075.101.2.0.0 (iBridge: 22.16.14248.0.0,0) OS Loader Version: 583~900 Software: System Software Overview: System Version: macOS 15.4.1 (24E263) Kernel Version: Darwin 24.4.0 Time since boot: 12 days, 9 hours, 17 minutes Graphics/Displays: Radeon Pro Vega 64X: Chipset Model: Radeon Pro Vega 64X Type: GPU Bus: PCIe PCIe Lane Width: x16 VRAM (Total): 16 GB Vendor: AMD (0x1002) Device ID: 0x686b Revision ID: 0x0000 ROM Revision: 113-D0500D-114 VBIOS Version: 113-D05001A1XX-021 Option ROM Version: 113-D05001A1XX-021 EFI Driver Version: 01.01.114 Metal Support: Metal 3 Displays: iMac: Display Type: Built-In Retina LCD Resolution: Retina 5K (5120 x 2880) Framebuffer Depth: 30-Bit Color (ARGB2101010) Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal DELL U3219Q: Resolution: 6720 x 3780 UI Looks like: 3360 x 1890 @ 30.00Hz Framebuffer Depth: 30-Bit Color (ARGB2101010) Display Serial Number: 3QXS413 Mirror: Off Online: Yes Rotation: Supported Adapter Type: DVI or HDMI Installed Packages: alabaster: 1.0.0 anyio: 4.7.0 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.0 auditwheel: 6.1.0 autocommand: 2.2.2 babel: 2.16.0 backports.tarfile: 1.2.0 beautifulsoup4: 4.12.3 blockdiag: 3.0.0 blosc2: 3.0.0 build: 1.2.1 certifi: 2023.11.17 cftime: 1.6.4.post1 charset-normalizer: 3.4.0 ChimeraX-AddCharge: 1.5.18 ChimeraX-AddH: 2.2.6 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.5 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.16.1 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.58.8 ChimeraX-AtomicLibrary: 14.1.11 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.4.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.4 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.3 ChimeraX-Clipper: 0.24.0 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.6 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.9 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.4 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2.6 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.3 ChimeraX-ISOLDE: 1.9 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.2.1 ChimeraX-Label: 1.1.14 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.6 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.7.2 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.14.2 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.18 ChimeraX-ModelPanel: 1.5 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.14 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.6 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.2 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.2 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.6 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.14 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.0 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.18.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.41 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.4 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.3.1 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.0.10 debugpy: 1.8.9 decorator: 5.1.1 docutils: 0.21.2 executing: 2.1.0 filelock: 3.15.4 fonttools: 4.55.3 funcparserlib: 2.0.0a0 glfw: 2.8.0 grako: 3.16.5 h11: 0.14.0 h5py: 3.12.1 html2text: 2024.2.26 httpcore: 1.0.7 httpx: 0.28.1 idna: 3.10 ihm: 1.3 imagecodecs: 2024.6.1 imagesize: 1.4.1 importlib_metadata: 8.0.0 importlib_resources: 6.4.0 inflect: 7.3.1 ipykernel: 6.29.5 ipython: 8.26.0 ipywidgets: 8.1.5 jaraco.context: 5.3.0 jaraco.functools: 4.0.1 jaraco.text: 3.12.1 jedi: 0.19.1 Jinja2: 3.1.4 jupyter_client: 8.6.2 jupyter_core: 5.7.2 jupyterlab_widgets: 3.0.13 kiwisolver: 1.4.7 line_profiler: 4.1.3 lxml: 5.2.2 lz4: 4.3.3 MarkupSafe: 3.0.2 matplotlib: 3.9.2 matplotlib-inline: 0.1.7 more-itertools: 10.3.0 msgpack: 1.0.8 ndindex: 1.9.2 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.10.2 numpy: 1.26.4 openvr: 1.26.701 ordered-set: 4.1.0 packaging: 23.2 packaging: 24.1 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pexpect: 4.9.0 pillow: 10.4.0 pip: 24.2 pkginfo: 1.11.1 platformdirs: 4.3.6 platformdirs: 4.2.2 prompt_toolkit: 3.0.48 psutil: 6.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 pyelftools: 0.31 Pygments: 2.18.0 pynmrstar: 3.3.4 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.3401 pyparsing: 3.2.0 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.7.1 PyQt6-Qt6: 6.7.3 PyQt6-WebEngine-commercial: 6.7.0 PyQt6-WebEngine-Qt6: 6.7.3 PyQt6-WebEngineSubwheel-Qt6: 6.7.3 PyQt6_sip: 13.8.0 python-dateutil: 2.9.0.post0 pytz: 2024.2 pyzmq: 26.2.0 qtconsole: 5.5.2 QtPy: 2.4.2 qtshim: 1.0 RandomWords: 0.4.0 requests: 2.32.3 scipy: 1.14.0 setuptools: 72.1.0 sfftk-rw: 0.8.1 six: 1.16.0 sniffio: 1.3.1 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.6 Sphinx: 8.0.2 sphinx-autodoc-typehints: 2.2.3 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 stack-data: 0.6.3 superqt: 0.6.3 tables: 3.10.1 tcia_utils: 1.5.1 tifffile: 2024.7.24 tinyarray: 1.2.4 tomli: 2.0.1 tornado: 6.4.2 traitlets: 5.14.3 typeguard: 4.3.0 typing_extensions: 4.12.2 typing_extensions: 4.12.2 tzdata: 2024.2 urllib3: 2.2.3 wcwidth: 0.2.13 webcolors: 24.6.0 wheel: 0.43.0 wheel: 0.43.0 wheel-filename: 1.4.1 widgetsnbextension: 4.0.13 zipp: 3.19.2 }}} " defect closed normal Graphics nonchimerax all ChimeraX