id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
17585	Crash moving window between screens	chimerax-bug-report@…	Tom Goddard	"{{{
The following bug report has been submitted:
Platform:        macOS-15.4.1-arm64-arm-64bit
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Last time you used ChimeraX it crashed.
This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX.
Fatal Python error: Segmentation fault

Thread 0x0000000387017000 (most recent call first):
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 324 in wait
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 622 in wait
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1392 in run
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap

Current thread 0x000000020878cc80 (most recent call first):
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 330 in event_loop
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1054 in init
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1217 in 
  File """", line 88 in _run_code
  File """", line 198 in _run_module_as_main

Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.surface._surface, chimerax.map._map, charset_normalizer.md, requests.packages.charset_normalizer.md, requests.packages.chardet.md, PIL._imaging, kiwisolver._cext, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.pdb_lib._load_libs, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.pdb._pdbio, PIL._imagingmath, chimerax.alignment_algs._sw, chimerax.dssp._dssp, chimerax.alignment_algs._nw, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize (total: 57)


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  ""vmSummary"" : ""ReadOnly portion of Libraries: Total=1.9G resident=0K(0%) swapped_out_or_unallocated=1.9G(100%)\nWritable regions: Total=3.9G written=2515K(0%) resident=2403K(0%) swapped_out=112K(0%) unallocated=3.9G(100%)\n\n                                VIRTUAL   REGION \nREGION TYPE                        SIZE    COUNT (non-coalesced) \n===========                     =======  ======= \nAccelerate framework               384K        3 \nActivity Tracing                   256K        1 \nCG image                           816K       43 \nColorSync                          624K       33 \nCoreAnimation                     2224K      139 \nCoreGraphics                       144K        9 \nCoreServices                       624K        2 \nCoreUI image data                 5824K       49 \nFoundation                          48K        2 \nKernel Alloc Once                   32K        1 \nMALLOC                             3.2G      120 \nMALLOC guard page                  288K       18 \nMach message                        64K        3 \nOpenGL GLSL                        384K        4 \nSTACK GUARD                       56.7M       42 \nStack                            217.4M       42 \nVM_ALLOCATE                      354.2M      252 \nVM_ALLOCATE (reserved)           192.0M        4         reserved VM address space (unallocated)\n__AUTH                            5486K      695 \n__AUTH_CONST                      77.2M      942 \n__CTF                               824        1 \n__DATA                            34.0M     1086 \n__DATA_CONST                      36.8M     1102 \n__DATA_DIRTY                      2775K      342 \n__FONT_DATA                        2352        1 \n__GLSLBUILTINS                    5174K        1 \n__INFO_FILTER                         8        1 \n__LINKEDIT                       651.4M      155 \n__OBJC_RO                         61.3M        1 \n__OBJC_RW                         2391K        1 \n__TEXT                             1.3G     1121 \n__TEXT (graphics)                   16K        1 \n__TPRO_CONST                       128K        2 \ndyld private memory               3104K       26 \nmapped file                      687.1M      108 \npage table in kernel              2403K        1 \nshared memory                     3744K       28 \n===========                     =======  ======= \nTOTAL                              6.8G     6382 \nTOTAL, minus reserved VM space     6.6G     6382 \n"",
  ""legacyInfo"" : {
  ""threadTriggered"" : {
    ""name"" : ""CrBrowserMain"",
    ""queue"" : ""com.apple.main-thread""
  }
},
  ""logWritingSignature"" : ""2802c4ea3f497f76a06aa4827277de4f97bac481"",
  ""trialInfo"" : {
  ""rollouts"" : [
    {
      ""rolloutId"" : ""67648e5334a82511f4acf879"",
      ""factorPackIds"" : {

      },
      ""deploymentId"" : 240000008
    },
    {
      ""rolloutId"" : ""654439cdafbf5b61207873a9"",
      ""factorPackIds"" : {

      },
      ""deploymentId"" : 240000004
    }
  ],
  ""experiments"" : [
    {
      ""treatmentId"" : ""ccf01f2d-382e-4ccc-a332-b3f688bc9bbf"",
      ""experimentId"" : ""67f46b1a73932228c9baf274"",
      ""deploymentId"" : 400000001
    }
  ]
}
}
===== Log before crash start =====
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.9 (2024-12-11)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open ""/Users/scarlett/Desktop/01 结构生物学220924/17 LAS1L/02 structure/9dum
> PELP1（1-642）-WDR18-TEX10（43-929）.cif""

9dum PELP1（1-642）-WDR18-TEX10（43-929）.cif title:  
Human PELP1-WDR18-TEX10 complex [more info...]  
  
Chain information for 9dum PELP1（1-642）-WDR18-TEX10（43-929）.cif #1  
---  
Chain | Description | UniProt  
A B | WD repeat-containing protein 18 | WDR18_HUMAN 1-432  
C D | Proline-, glutamic acid- and leucine-rich protein 1 | PELP1_HUMAN 1-642  
G H | Testis-expressed protein 10 | TEX10_HUMAN 1-929  
  

> open ""/Users/scarlett/Desktop/01 结构生物学220924/17 LAS1L/02 structure/9dun
> LAS1L（1-200，614-682）-NOL9（103-702）.cif""

9dun LAS1L（1-200，614-682）-NOL9（103-702）.cif title:  
Human LAS1L-NOL9 complex [more info...]  
  
Chain information for 9dun LAS1L（1-200，614-682）-NOL9（103-702）.cif #2  
---  
Chain | Description | UniProt  
A B | Polynucleotide 5'-hydroxyl-kinase NOL9 | NOL9_HUMAN 103-702  
C D | Ribosomal biogenesis protein LAS1L | LAS1L_HUMAN 1-200  
E F | Ribosomal biogenesis protein LAS1L | LAS1L_HUMAN 614-682  
  

> open ""/Users/scarlett/Desktop/01 结构生物学220924/17 LAS1L/02 structure/9duo
> PELP1（1-642）-WDR18.cif""

9duo PELP1（1-642）-WDR18.cif title:  
Human PELP1-WDR18 complex [more info...]  
  
Chain information for 9duo PELP1（1-642）-WDR18.cif #3  
---  
Chain | Description | UniProt  
A B | WD repeat-containing protein 18 | WDR18_HUMAN 1-432  
C D | Proline-, glutamic acid- and leucine-rich protein 1 | PELP1_HUMAN 1-642  
  

> hide #!3 models

> hide #!2 models

> show #!1 cartoons

> hide #!1 cartoons

> show #!1 atoms

> hide #!1 atoms

> show #!1 atoms

> show #!1 cartoons

> nucleotides #!1 atoms

> style nucleic & #!1 stick

Changed 0 atom styles  

> style #!1 ball

Changed 22662 atom styles  

> style #!1 sphere

Changed 22662 atom styles  

> style #!1 stick

Changed 22662 atom styles  

> volume style surface

No volumes specified  

> volume style surface

No volumes specified  

> volume hide

No volumes specified  

> volume hide

No volumes specified  

> hide #!1 models

> show #!2 models

> show #!2 cartoons

> show #!2 atoms

> hide #!2 atoms

> hide #!2 models

> show #!1 models

> hide #!1 atoms

> hide #!1 models

> show #!3 models

> color #!3 bychain

> hide #!3 models

> show #!2 models

> color #!2 bychain

> undo

> hide #!2 models

> show #!1 models

> hide #!1 models

> show #!2 models

> hide #!2 models

> show #!1 models

> show #!2 models

> show #!3 models

> hide #!3 models

> hide #!2 models

> show #!2 models

> hide #!2 models

> hide #!1 models

> show #!1 models

> show #!3 models

> hide #!3 models

> hide #!1 models

> show #!3 models

> hide #!3 models

> cd /Users/scarlett/Desktop/2025-NC

Current working directory is: /Users/scarlett/Desktop/2025-NC  

> open ""/Users/scarlett/Desktop/01 结构生物学220924/01 Rix1 complex/Structure/human
> RIX1.cif""

human RIX1.cif title:  
Human Rix1 sub-complex scaffold [more info...]  
  
Chain information for human RIX1.cif #4  
---  
Chain | Description | UniProt  
A B | WD repeat-containing protein 18 | WDR18_HUMAN 1-432  
C D | Modulator of non-genomic activity of estrogen receptor | C9JFV4_HUMAN 1-642  
  

> open ""/Users/scarlett/Desktop/01 结构生物学220924/01 Rix1 complex/Structure/7uwf
> RIX1 human.pdb""

7uwf RIX1 human.pdb title:  
Human RIX1 sub-complex scaffold [more info...]  
  
Chain information for 7uwf RIX1 human.pdb #5  
---  
Chain | Description | UniProt  
A B | WD repeat-containing protein 18 | WDR18_HUMAN 1-432  
C D | modulator of non-genomic activity of estrogen receptor | C9JFV4_HUMAN 1-642  
  

> open ""/Users/scarlett/Desktop/01 结构生物学220924/01 Rix1
> complex/Structure/emd_29267.map.gz""

File reader requires uncompressed file; '/Users/scarlett/Desktop/01
结构生物学220924/01 Rix1 complex/Structure/emd_29267.map.gz' is compressed  

> open ""/Users/scarlett/Desktop/01 结构生物学220924/01 Rix1
> complex/Structure/LAS1L/Las1l_nol9-coot-2_real_space_refined_000.pdb""

Chain information for Las1l_nol9-coot-2_real_space_refined_000.pdb #6  
---  
Chain | Description  
A B | No description available  
C | No description available  
D | No description available  
  

> hide #!4 models

> hide #!5 models

> show #!2 models

> align #2 toAtoms #6

Unequal number of atoms to pair, 6672 and 11679  

> matchmaker #2 to #6

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker Las1l_nol9-coot-2_real_space_refined_000.pdb, chain C (#6) with
9dun LAS1L（1-200，614-682）-NOL9（103-702）.cif, chain B (#2), sequence alignment
score = 2130.4  
RMSD between 243 pruned atom pairs is 0.893 angstroms; (across all 258 pairs:
1.121)  
  

> rmsd #2 to #6

Unknown command: measure rmsd #2 to #6  

> save ""/Users/scarlett/Desktop/01 结构生物学220924/17 LAS1L/02
> structure/LAS1L-NOL9（FL）compare with LAS1L（1-200，614-682）-NOL9（103-702）.cxs""

> set bgColor white

> save /Users/scarlett/Desktop/image1.png supersample 3

> save /Users/scarlett/Desktop/image2.png supersample 3

> save /Users/scarlett/Desktop/image3.png supersample 3

> hide #!2 models

> color #!6 bychain

> show #!2 models

> hide #!6 models

> show #!6 models

> hide #!2 models

> select #6/A

1712 atoms, 1750 bonds, 1 pseudobond, 210 residues, 2 models selected  

> select #6/B

1712 atoms, 1750 bonds, 1 pseudobond, 210 residues, 2 models selected  

> select backbone

41856 atoms, 41714 bonds, 114 pseudobonds, 10471 residues, 12 models selected  

> color (#!6 & sel) dark gray

> select #6/A

1712 atoms, 1750 bonds, 1 pseudobond, 210 residues, 2 models selected  

> color (#!6 & sel) dim gray

> select #6/C

4128 atoms, 4231 bonds, 1 pseudobond, 523 residues, 2 models selected  

> select #6/A

1712 atoms, 1750 bonds, 1 pseudobond, 210 residues, 2 models selected  

> select #6/B

1712 atoms, 1750 bonds, 1 pseudobond, 210 residues, 2 models selected  

> color (#!6 & sel) dim gray

> show #!2 models

> select clear

> ui tool show ""Side View""

> view

> view orient

> volume planes z style image imageMode ""full region""

No volumes specified  

> ui mousemode right ""move planes""

> save /Users/scarlett/Desktop/image4.png supersample 3

> save /Users/scarlett/Desktop/image5.png supersample 3

> save /Users/scarlett/Desktop/image6.png supersample 3

> save /Users/scarlett/Desktop/image7.png supersample 3

> set bgColor black

> hide #!2 models

> hide #!6 models

> show #!1 models

> show #!1 atoms


===== Log before crash end =====

Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.9 (2024-12-11)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 Metal - 89.4
OpenGL renderer: Apple M4
OpenGL vendor: Apple

Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Air
      Model Identifier: Mac16,12
      Model Number: MC6V4CH/A
      Chip: Apple M4
      Total Number of Cores: 10 (4 performance and 6 efficiency)
      Memory: 24 GB
      System Firmware Version: 11881.101.1
      OS Loader Version: 11881.101.1

Software:

    System Software Overview:

      System Version: macOS 15.4.1 (24E263)
      Kernel Version: Darwin 24.4.0
      Time since boot: 1天4小时58分钟

Graphics/Displays:

    Apple M4:

      Chipset Model: Apple M4
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 10
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-in Liquid Retina Display
          Resolution: 2560 x 1664 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal
        PHL 242M8:
          Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
          UI Looks like: 1920 x 1080 @ 144.00Hz
          Mirror: Off
          Online: Yes
          Rotation: Supported
        Sidecar Display:
          Resolution: 2160 x 1620
          UI Looks like: 1080 x 810 @ 60.00Hz
          Framebuffer Depth: 24-Bit Color (ARGB8888)
          Mirror: Off
          Connection Type: AirPlay
          Virtual Device: Yes


Installed Packages:
    alabaster: 1.0.0
    anyio: 4.7.0
    appdirs: 1.4.4
    appnope: 0.1.4
    asttokens: 3.0.0
    auditwheel: 6.1.0
    babel: 2.16.0
    beautifulsoup4: 4.12.3
    blockdiag: 3.0.0
    blosc2: 3.0.0
    build: 1.2.1
    certifi: 2023.11.17
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.0
    ChimeraX-AddCharge: 1.5.18
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.5
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.16.1
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.58.8
    ChimeraX-AtomicLibrary: 14.1.11
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.4.0
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.6
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.9
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.4
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2.6
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.3
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.2.1
    ChimeraX-Label: 1.1.14
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.6
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7.2
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14.2
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.18
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.14
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.6
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.2
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.2
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.6
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.14
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.0
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.18.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.41
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    contourpy: 1.3.1
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.0.10
    debugpy: 1.8.9
    decorator: 5.1.1
    docutils: 0.21.2
    executing: 2.1.0
    filelock: 3.15.4
    fonttools: 4.55.3
    funcparserlib: 2.0.0a0
    glfw: 2.8.0
    grako: 3.16.5
    h11: 0.14.0
    h5py: 3.12.1
    html2text: 2024.2.26
    httpcore: 1.0.7
    httpx: 0.28.1
    idna: 3.10
    ihm: 1.3
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    ipykernel: 6.29.5
    ipython: 8.26.0
    ipywidgets: 8.1.5
    jedi: 0.19.1
    Jinja2: 3.1.4
    jupyter_client: 8.6.2
    jupyter_core: 5.7.2
    jupyterlab_widgets: 3.0.13
    kiwisolver: 1.4.7
    line_profiler: 4.1.3
    lxml: 5.2.2
    lz4: 4.3.3
    MarkupSafe: 3.0.2
    matplotlib: 3.9.2
    matplotlib-inline: 0.1.7
    msgpack: 1.0.8
    ndindex: 1.9.2
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.2
    numpy: 1.26.4
    openvr: 1.26.701
    packaging: 23.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pexpect: 4.9.0
    pillow: 10.4.0
    pip: 24.2
    pkginfo: 1.11.1
    platformdirs: 4.3.6
    prompt_toolkit: 3.0.48
    psutil: 6.0.0
    ptyprocess: 0.7.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pyelftools: 0.31
    Pygments: 2.18.0
    pynmrstar: 3.3.4
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.3401
    pyparsing: 3.2.0
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.7.1
    PyQt6-Qt6: 6.7.3
    PyQt6-WebEngine-commercial: 6.7.0
    PyQt6-WebEngine-Qt6: 6.7.3
    PyQt6-WebEngineSubwheel-Qt6: 6.7.3
    PyQt6_sip: 13.8.0
    python-dateutil: 2.9.0.post0
    pytz: 2024.2
    pyzmq: 26.2.0
    qtconsole: 5.5.2
    QtPy: 2.4.2
    qtshim: 1.0
    RandomWords: 0.4.0
    requests: 2.32.3
    scipy: 1.14.0
    setuptools: 72.1.0
    sfftk-rw: 0.8.1
    six: 1.16.0
    sniffio: 1.3.1
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.6
    Sphinx: 8.0.2
    sphinx-autodoc-typehints: 2.2.3
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    stack-data: 0.6.3
    superqt: 0.6.3
    tables: 3.10.1
    tcia_utils: 1.5.1
    tifffile: 2024.7.24
    tinyarray: 1.2.4
    tornado: 6.4.2
    traitlets: 5.14.3
    typing_extensions: 4.12.2
    tzdata: 2024.2
    urllib3: 2.2.3
    wcwidth: 0.2.13
    webcolors: 24.6.0
    wheel: 0.43.0
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.13
}}}
"	defect	closed	normal		Window Toolkit		duplicate						all	ChimeraX