id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
17584	Crash moving window between screens	chimerax-bug-report@…	Tom Goddard	"{{{
The following bug report has been submitted:
Platform:        macOS-15.3.2-arm64-arm-64bit
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Last time you used ChimeraX it crashed.
This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX.
Fatal Python error: Segmentation fault

Thread 0x00000003a2fab000 (most recent call first):
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 324 in wait
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 622 in wait
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1392 in run
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap

Current thread 0x00000001ff8b8840 (most recent call first):
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 330 in event_loop
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1054 in init
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1217 in 
  File """", line 88 in _run_code
  File """", line 198 in _run_module_as_main

Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, charset_normalizer.md, requests.packages.charset_normalizer.md, requests.packages.chardet.md, PIL._imaging, kiwisolver._cext, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.pdb_lib._load_libs, chimerax.surface._surface, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.pdb._pdbio, PIL._imagingmath, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets (total: 52)


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  ""vmSummary"" : ""ReadOnly portion of Libraries: Total=1.9G resident=0K(0%) swapped_out_or_unallocated=1.9G(100%)\nWritable regions: Total=3.2G written=1944K(0%) resident=1944K(0%) swapped_out=0K(0%) unallocated=3.2G(100%)\n\n                                VIRTUAL   REGION \nREGION TYPE                        SIZE    COUNT (non-coalesced) \n===========                     =======  ======= \nAccelerate framework               256K        2 \nActivity Tracing                   256K        1 \nCG image                          1264K       44 \nColorSync                          656K       33 \nCoreAnimation                     4640K      212 \nCoreGraphics                       112K        7 \nCoreImage                           64K        2 \nCoreUI image data                 6336K       51 \nFoundation                          16K        1 \nKernel Alloc Once                   32K        1 \nMALLOC                             2.5G      124 \nMALLOC guard page                  288K       18 \nMach message                        64K        2 \nOpenGL GLSL                        384K        4 \nSTACK GUARD                       56.7M       46 \nStack                            212.0M       46 \nVM_ALLOCATE                      189.0M      225 \nVM_ALLOCATE (reserved)           256.0M        4         reserved VM address space (unallocated)\n__AUTH                            5216K      665 \n__AUTH_CONST                      70.3M      912 \n__CTF                               824        1 \n__DATA                            33.0M     1052 \n__DATA_CONST                      34.0M     1069 \n__DATA_DIRTY                      2761K      339 \n__FONT_DATA                        2352        1 \n__GLSLBUILTINS                    5174K        1 \n__INFO_FILTER                         8        1 \n__LINKEDIT                       637.4M      151 \n__OBJC_RW                         2374K        1 \n__TEXT                             1.3G     1089 \n__TPRO_CONST                       272K        2 \ndyld private memory                 32K        2 \nmapped file                      566.9M       93 \nowned unmapped memory             21.4M        1 \npage table in kernel              1944K        1 \nshared memory                     3216K       26 \n===========                     =======  ======= \nTOTAL                              5.9G     6230 \nTOTAL, minus reserved VM space     5.6G     6230 \n"",
  ""legacyInfo"" : {
  ""threadTriggered"" : {
    ""name"" : ""CrBrowserMain"",
    ""queue"" : ""com.apple.main-thread""
  }
},
  ""logWritingSignature"" : ""6695d84e6561a964b529d696c116c7bed86df863"",
  ""trialInfo"" : {
  ""rollouts"" : [
    {
      ""rolloutId"" : ""6761d0c9df60af01adb250fb"",
      ""factorPackIds"" : {

      },
      ""deploymentId"" : 240000009
    },
    {
      ""rolloutId"" : ""645197bf528fbf3c3af54105"",
      ""factorPackIds"" : {
        ""SIRI_VALUE_INFERENCE_PERVASIVE_ENTITY_RESOLUTION"" : ""663e65b4a1526e1ca0e288a1""
      },
      ""deploymentId"" : 240000002
    }
  ],
  ""experiments"" : [

  ]
}
}
===== Log before crash start =====
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.9 (2024-12-11)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open ""/Users/isame850/Documents/PhD/1 Projects/1 Human sORFs/2 Results/2
> Structure Prediction/AF3
> complexes_FP/fold_250314_ap2m1_sorf25_10_25/fold_250314_ap2m1_sorf25_10_25_model_0.cif""

Chain information for fold_250314_ap2m1_sorf25_10_25_model_0.cif #1  
---  
Chain | Description  
A | .  
B | .  
  
Computing secondary structure  

> color bfactor palette alphafold

2347 atoms, 292 residues, atom bfactor range 24 to 98.9  

> set bgColor white

> style sphere

Changed 2347 atom styles  

> style stick

Changed 2347 atom styles  

> style ball

Changed 2347 atom styles  

> lighting full

> show cartoons

> style stick

Changed 2347 atom styles  

> nucleotides atoms

> style nucleic stick

Changed 0 atom styles  

> nucleotides atoms

> style nucleic stick

Changed 0 atom styles  

> style sphere

Changed 2347 atom styles  

> show surfaces

> hide surfaces

> show surfaces

> hide surfaces

> lighting flat

> lighting full

> lighting flat

> lighting simple

> graphics silhouettes false

> graphics silhouettes true

> graphics silhouettes false

> lighting full

> lighting shadows false

> lighting shadows true

> ui tool show ""Side View""

> view

> transparency 50

> transparency 0

> volume style surface

No volumes specified  

> volume style surface

No volumes specified  

Fit in map shortcut requires 1 displayed atomic model and 1 map or two maps,
got 1 atomic models, 0 maps.  

> show surfaces

> transparency 50

Color zone shortcut requires 1 displayed atomic model and 1 map, got 1 atomic
models, 0 maps.  

Hide dust shortcut requires a displayed map surface  

> segmentations mouseModes true

> ui mousemode shift wheel 'resize segmentation cursor'

> ui mousemode right 'create segmentations'

> ui mousemode shift right 'erase segmentations'

> ui mousemode shift middle 'move segmentation cursor'

> color magenta

> transparency 50

> undo

Alignment identifier is 1/A  
Alignment identifier is 1/B  

> select /B:1

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select /B

135 atoms, 139 bonds, 16 residues, 1 model selected  

> color B magenta

> color /b magenta

> transparency sel 50

> select /B:1

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select /B

135 atoms, 139 bonds, 16 residues, 1 model selected  

> transparency (#!1 & sel) 80

> transparency (#!1 & sel) 40

> transparency (#!1 & sel) 50

> select /B:6

7 atoms, 7 bonds, 1 residue, 1 model selected  

> select /B:6-10

45 atoms, 48 bonds, 5 residues, 1 model selected  

> select /B:5

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select /B:5-8

31 atoms, 32 bonds, 4 residues, 1 model selected  

> show sel atoms

> hide sel atoms

> style sel stick

Changed 31 atom styles  

> style sel stick

Changed 31 atom styles  

> nucleotides sel atoms

> style nucleic & sel stick

Changed 0 atom styles  

> style sel stick

Changed 31 atom styles  

> show sel atoms

> view sel

> ui tool show ""Color Key""

> ui mousemode right ""color key""

> ui mousemode right ""create segmentations""

> undo

> show sel atoms

> style sel sphere

Changed 31 atom styles  

> style sel ball

Changed 31 atom styles  

> style sel stick

Changed 31 atom styles  

> nucleotides sel atoms

> style nucleic & sel stick

Changed 0 atom styles  

> nucleotides sel fill

> style nucleic & sel stick

Changed 0 atom styles  

> nucleotides sel fill

> style nucleic & sel stick

Changed 0 atom styles  

> nucleotides sel tube/slab shape box

> nucleotides sel ladder

> nucleotides sel atoms

> style nucleic & sel stick

Changed 0 atom styles  

> style sel sphere

Changed 31 atom styles  

> style sel ball

Changed 31 atom styles  

> style sel stick

Changed 31 atom styles  

> select /B:1

6 atoms, 5 bonds, 1 residue, 1 model selected  

> select /B

135 atoms, 139 bonds, 16 residues, 1 model selected  

> transparency (#!1 & sel) 60

> select /A:1

4 atoms, 3 bonds, 1 residue, 1 model selected  

> select /A

2212 atoms, 2256 bonds, 276 residues, 1 model selected  

> select /B

135 atoms, 139 bonds, 16 residues, 1 model selected  

> select /A

2212 atoms, 2256 bonds, 276 residues, 1 model selected  

> color (#!1 & sel) #f9fffbff

> color (#!1 & sel) #f6fff9ff

> color (#!1 & sel) #d1ffe4ff

> color (#!1 & sel) #cdffe0ff

> color (#!1 & sel) #cbffdeff

> color (#!1 & sel) #caffddff

> color (#!1 & sel) #c9ffdcff

> color (#!1 & sel) #c8ffdbff

> color (#!1 & sel) #c5ffd8ff

> color (#!1 & sel) #c4ffd6ff

> color (#!1 & sel) #c2ffd4ff

> color (#!1 & sel) #beffcfff

> color (#!1 & sel) #bdffcdff

> color (#!1 & sel) #bbffcaff

> color (#!1 & sel) #b9ffc6ff

> color (#!1 & sel) #b7ffc5ff

> color (#!1 & sel) #b7ffc4ff

> color (#!1 & sel) #b7ffc3ff

> color (#!1 & sel) #b6ffc2ff

> color (#!1 & sel) #b5ffc1ff

> color (#!1 & sel) #b4ffc0ff

> color (#!1 & sel) #b3ffbdff

> color (#!1 & sel) #b2ffbbff

> color (#!1 & sel) #b1ffb6ff

> color (#!1 & sel) #afffb2ff

> color (#!1 & sel) #aeffafff

> color (#!1 & sel) #aeffaeff

> color (#!1 & sel) #aeffacff

> color (#!1 & sel) #aeffabff

> color (#!1 & sel) #aeffa9ff

> color (#!1 & sel) #adffa5ff

> color (#!1 & sel) #adffa4ff

> color (#!1 & sel) #afffa1ff

> color (#!1 & sel) #afff9fff

> color (#!1 & sel) #b0ff9eff

> color (#!1 & sel) #b2ff9bff

> color (#!1 & sel) #b3ff99ff

> color (#!1 & sel) #b4ff98ff

> color (#!1 & sel) #b6ff96ff

> color (#!1 & sel) #b7ff95ff

> color (#!1 & sel) #b7ff94ff

> color (#!1 & sel) #b7ff93ff

> color (#!1 & sel) #b7ff91ff

> color (#!1 & sel) #b6ff90ff

> color (#!1 & sel) #b4ff8dff

> color (#!1 & sel) #b3ff8cff

> color (#!1 & sel) #b2ff8aff

> color (#!1 & sel) #b1ff88ff

> color (#!1 & sel) #b1ff87ff

> color (#!1 & sel) #b0ff86ff

> color (#!1 & sel) #adff83ff

> color (#!1 & sel) #abff81ff

> color (#!1 & sel) #a7ff7fff

> color (#!1 & sel) #9eff7cff

> color (#!1 & sel) #94ff78ff

> color (#!1 & sel) #8aff75ff

> color (#!1 & sel) #76ff6fff

> color (#!1 & sel) #6aff6cff

> color (#!1 & sel) #69ff6dff

> color (#!1 & sel) #69ff6eff

> color (#!1 & sel) #6aff74ff

> color (#!1 & sel) #6cff78ff

> color (#!1 & sel) #6eff7cff

> color (#!1 & sel) #73ff86ff

> color (#!1 & sel) #75ff89ff

> color (#!1 & sel) #78ff8eff

> color (#!1 & sel) #7aff91ff

> color (#!1 & sel) #7bff92ff

> color (#!1 & sel) #7bff93ff

> color (#!1 & sel) #7bff94ff

> color (#!1 & sel) #7cff94ff

> color (#!1 & sel) #7cff96ff

> color (#!1 & sel) #7dff97ff

> color (#!1 & sel) #7eff98ff

> color (#!1 & sel) #80ff9cff

> color (#!1 & sel) #82ff9eff

> color (#!1 & sel) #83ffa1ff

> color (#!1 & sel) #88ffa6ff

> color (#!1 & sel) #89ffa7ff

> color (#!1 & sel) #8cffa9ff

> color (#!1 & sel) #8fffabff

> color (#!1 & sel) #91ffabff

> color (#!1 & sel) #92ffacff

> color (#!1 & sel) #93ffacff

> color (#!1 & sel) #94ffadff

> color (#!1 & sel) #97ffadff

> color (#!1 & sel) #98ffaeff

> color (#!1 & sel) #99ffaeff

> color (#!1 & sel) #9cffaeff

> color (#!1 & sel) #9dffafff

> color (#!1 & sel) #9effafff

> color (#!1 & sel) #a2ffafff

> color (#!1 & sel) #a3ffafff

> color (#!1 & sel) #a4ffafff

> color (#!1 & sel) #a6ffb0ff

> color (#!1 & sel) #a7ffb1ff

> color (#!1 & sel) #a8ffb2ff

> color (#!1 & sel) #aaffb4ff

> color (#!1 & sel) #acffb6ff

> color (#!1 & sel) #aeffb9ff

> color (#!1 & sel) #b4ffbeff

> color (#!1 & sel) #b6ffc0ff

> color (#!1 & sel) #b7ffc2ff

> color (#!1 & sel) #b8ffc2ff

> color (#!1 & sel) #b9ffc2ff

> color (#!1 & sel) #baffc2ff

> color (#!1 & sel) #baffc3ff

> color (#!1 & sel) #b3ffb0ff

> color (#!1 & sel) #b9ffb1ff

> color (#!1 & sel) #baffb0ff

> color (#!1 & sel) #b9ffacff

> color (#!1 & sel) #b8ffaaff

> color (#!1 & sel) #b7ffa8ff

> color (#!1 & sel) #b4ffa1ff

> color (#!1 & sel) #b3ffa0ff

> color (#!1 & sel) #b2ff9eff

> color (#!1 & sel) #b2ff9bff

> color (#!1 & sel) #b4ff9bff

> color (#!1 & sel) #b5ff99ff

> color (#!1 & sel) #b5ff98ff

> color (#!1 & sel) #b6ff97ff

> color (#!1 & sel) #b7ff97ff

> color (#!1 & sel) #b7ff96ff

> color (#!1 & sel) #b7ff95ff

> color (#!1 & sel) #b6ff94ff

> color (#!1 & sel) #b4ff92ff

> color (#!1 & sel) #b3ff91ff

> color (#!1 & sel) #b5ff8dff

> color (#!1 & sel) #b6ff93ff

> color (#!1 & sel) #b6ff95ff

> color (#!1 & sel) #b7ff97ff

> color (#!1 & sel) #b7ff9bff

> color (#!1 & sel) #b5ff9dff

> color (#!1 & sel) #b4ff9dff

> color (#!1 & sel) #b3ff9eff

> color (#!1 & sel) #b1ff9eff

> color (#!1 & sel) #b1ff9fff

> color (#!1 & sel) #b1ffa0ff

> color (#!1 & sel) #b1ffa1ff

> color (#!1 & sel) #b2ffa3ff

> color (#!1 & sel) #b3ffa5ff

> color (#!1 & sel) #b4ffa5ff

> color (#!1 & sel) #b5ffa6ff

> color (#!1 & sel) #b8ffa7ff

> color (#!1 & sel) #baffa8ff

> color (#!1 & sel) #bdffa9ff

> color (#!1 & sel) #c7ffacff

> color (#!1 & sel) #d0ffadff

> color (#!1 & sel) #d6ffaeff

> color (#!1 & sel) #dcffaeff

> color (#!1 & sel) #ddffaeff

> color (#!1 & sel) #dfffafff

> color (#!1 & sel) #e2ffafff

> color (#!1 & sel) #e2ffaeff

> color (#!1 & sel) #e2ffadff

> color (#!1 & sel) #e2ffaaff

> color (#!1 & sel) #e1ffa8ff

> color (#!1 & sel) #deffa1ff

> color (#!1 & sel) #deffa0ff

> color (#!1 & sel) #ddff9eff

> color (#!1 & sel) #dcff9cff

> color (#!1 & sel) #dcff9aff

> color (#!1 & sel) #dbff98ff

> color (#!1 & sel) #dbff92ff

> color (#!1 & sel) #dcff90ff

> color (#!1 & sel) #dcff8fff

> color (#!1 & sel) #deff8aff

> color (#!1 & sel) #deff88ff

> color (#!1 & sel) #dfff87ff

> color (#!1 & sel) #dfff84ff

> color (#!1 & sel) #e0ff82ff

> color (#!1 & sel) #e0ff80ff

> color (#!1 & sel) #dfff7dff

> color (#!1 & sel) #dfff7cff

> color (#!1 & sel) #dfff7bff

> color (#!1 & sel) #deff79ff

> color (#!1 & sel) #ddff77ff

> color (#!1 & sel) #dcff76ff

> color (#!1 & sel) #daff72ff

> color (#!1 & sel) #d8ff70ff

> color (#!1 & sel) #d6ff6cff

> color (#!1 & sel) #d4ff69ff


===== Log before crash end =====

Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.9 (2024-12-11)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 Metal - 89.3
OpenGL renderer: Apple M3 Pro
OpenGL vendor: Apple

Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: Mac15,6
      Model Number: MRX63KS/A
      Chip: Apple M3 Pro
      Total Number of Cores: 11 (5 performance and 6 efficiency)
      Memory: 18 GB
      System Firmware Version: 11881.81.4
      OS Loader Version: 11881.81.4

Software:

    System Software Overview:

      System Version: macOS 15.3.2 (24D81)
      Kernel Version: Darwin 24.3.0
      Time since boot: 15 days, 7 hours, 5 minutes

Graphics/Displays:

    Apple M3 Pro:

      Chipset Model: Apple M3 Pro
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 14
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-in Liquid Retina XDR Display
          Resolution: 3024 x 1964 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal
        DELL E2720H:
          Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
          UI Looks like: 1920 x 1080 @ 60.00Hz
          Mirror: Off
          Online: Yes
          Rotation: Supported
        U28E590:
          Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition)
          UI Looks like: 1920 x 1080 @ 60.00Hz
          Mirror: Off
          Online: Yes
          Rotation: Supported


Installed Packages:
    alabaster: 1.0.0
    anyio: 4.7.0
    appdirs: 1.4.4
    appnope: 0.1.4
    asttokens: 3.0.0
    auditwheel: 6.1.0
    babel: 2.16.0
    beautifulsoup4: 4.12.3
    blockdiag: 3.0.0
    blosc2: 3.0.0
    build: 1.2.1
    certifi: 2023.11.17
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.0
    ChimeraX-AddCharge: 1.5.18
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.5
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.16.1
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.58.8
    ChimeraX-AtomicLibrary: 14.1.11
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.4.0
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.6
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.9
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.4
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2.6
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.3
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.2.1
    ChimeraX-Label: 1.1.14
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.6
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7.2
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14.2
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.18
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.14
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.6
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.2
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.2
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.6
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.14
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.0
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.18.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.41
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    contourpy: 1.3.1
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.0.10
    debugpy: 1.8.9
    decorator: 5.1.1
    docutils: 0.21.2
    executing: 2.1.0
    filelock: 3.15.4
    fonttools: 4.55.3
    funcparserlib: 2.0.0a0
    glfw: 2.8.0
    grako: 3.16.5
    h11: 0.14.0
    h5py: 3.12.1
    html2text: 2024.2.26
    httpcore: 1.0.7
    httpx: 0.28.1
    idna: 3.10
    ihm: 1.3
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    ipykernel: 6.29.5
    ipython: 8.26.0
    ipywidgets: 8.1.5
    jedi: 0.19.1
    Jinja2: 3.1.4
    jupyter_client: 8.6.2
    jupyter_core: 5.7.2
    jupyterlab_widgets: 3.0.13
    kiwisolver: 1.4.7
    line_profiler: 4.1.3
    lxml: 5.2.2
    lz4: 4.3.3
    MarkupSafe: 3.0.2
    matplotlib: 3.10.1
    matplotlib: 3.9.2
    matplotlib-inline: 0.1.7
    msgpack: 1.0.8
    narwhals: 1.38.1
    ndindex: 1.9.2
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.2
    numpy: 2.2.5
    numpy: 1.26.4
    openvr: 1.26.701
    packaging: 23.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pexpect: 4.9.0
    pillow: 10.4.0
    pip: 24.2
    pkginfo: 1.11.1
    platformdirs: 4.3.6
    plotly: 6.0.1
    prompt_toolkit: 3.0.48
    psutil: 6.0.0
    ptyprocess: 0.7.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pyelftools: 0.31
    Pygments: 2.18.0
    pyKVFinder: 0.8.0
    pynmrstar: 3.3.4
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.3401
    pyparsing: 3.2.0
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.7.1
    PyQt6-Qt6: 6.7.3
    PyQt6-WebEngine-commercial: 6.7.0
    PyQt6-WebEngine-Qt6: 6.7.3
    PyQt6-WebEngineSubwheel-Qt6: 6.7.3
    PyQt6_sip: 13.8.0
    python-dateutil: 2.9.0.post0
    pytz: 2024.2
    pyzmq: 26.2.0
    qtconsole: 5.5.2
    QtPy: 2.4.2
    qtshim: 1.0
    RandomWords: 0.4.0
    requests: 2.32.3
    scipy: 1.14.0
    setuptools: 72.1.0
    sfftk-rw: 0.8.1
    six: 1.16.0
    sniffio: 1.3.1
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.6
    Sphinx: 8.0.2
    sphinx-autodoc-typehints: 2.2.3
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    stack-data: 0.6.3
    superqt: 0.6.3
    tables: 3.10.1
    tcia_utils: 1.5.1
    tifffile: 2024.7.24
    tinyarray: 1.2.4
    tomlkit: 0.13.2
    tornado: 6.4.2
    traitlets: 5.14.3
    typing_extensions: 4.12.2
    tzdata: 2024.2
    urllib3: 2.2.3
    wcwidth: 0.2.13
    webcolors: 24.6.0
    wheel: 0.43.0
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.13
}}}
"	defect	closed	normal		Window Toolkit		duplicate						all	ChimeraX