﻿id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
17541	ChimeraX bug report submission	chimerax-bug-report@…		"{{{
The following bug report has been submitted:
Platform:        macOS-14.5-arm64-arm-64bit
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Last time you used ChimeraX it crashed.
This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX.
Fatal Python error: Segmentation fault

Current thread 0x0000000205558c00 (most recent call first):
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 330 in event_loop
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1054 in init
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1217 in 
  File """", line 88 in _run_code
  File """", line 198 in _run_module_as_main

Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.pdb_lib._load_libs, chimerax.surface._surface, chimerax.map._map, charset_normalizer.md, requests.packages.charset_normalizer.md, requests.packages.chardet.md, PIL._imaging, kiwisolver._cext, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.pdb._pdbio, PIL._imagingmath, chimerax.alignment_algs._sw, chimerax.dssp._dssp, chimerax.alignment_algs._nw, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, chimerax.atom_search.ast, markupsafe._speedups, cython.cimports.libc.math, scipy._lib._ccallback_c, scipy.sparse._sparsetools, _csparsetools, scipy.sparse._csparsetools, scipy.linalg._fblas, scipy.linalg._flapack, scipy.linalg.cython_lapack, scipy.linalg._cythonized_array_utils, scipy.linalg._solve_toeplitz, scipy.linalg._decomp_lu_cython, scipy.linalg._matfuncs_sqrtm_triu, scipy.linalg.cython_blas, scipy.linalg._matfuncs_expm, scipy.linalg._decomp_update, scipy.sparse.linalg._dsolve._superlu, scipy.sparse.linalg._eigen.arpack._arpack, scipy.sparse.linalg._propack._spropack, scipy.sparse.linalg._propack._dpropack, scipy.sparse.linalg._propack._cpropack, scipy.sparse.linalg._propack._zpropack, scipy.sparse.csgraph._tools, scipy.sparse.csgraph._shortest_path, scipy.sparse.csgraph._traversal, scipy.sparse.csgraph._min_spanning_tree, scipy.sparse.csgraph._flow, scipy.sparse.csgraph._matching, scipy.sparse.csgraph._reordering, scipy.spatial._ckdtree, scipy._lib.messagestream, scipy.spatial._qhull, scipy.spatial._voronoi, scipy.spatial._distance_wrap, scipy.spatial._hausdorff, scipy.special._ufuncs_cxx, scipy.special._ufuncs, scipy.special._specfun, scipy.special._comb, scipy.special._ellip_harm_2, scipy.spatial.transform._rotation, chimerax.chem_group._chem_group, chimerax.coulombic._esp (total: 99)


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===== Log before crash start =====
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.9 (2024-12-11)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open 7oe3

Summary of feedback from opening 7oe3 fetched from pdb  
---  
note | Fetching compressed mmCIF 7oe3 from http://files.rcsb.org/download/7oe3.cif  
  
7oe3 title:  
Apo-structure of Lassa virus L protein (well-resolved endonuclease) [APO-ENDO]
[more info...]  
  
Chain information for 7oe3 #1  
---  
Chain | Description | UniProt  
L | RNA-directed RNA polymerase L | A0A3S8NV63_9VIRU 1-2217  
  
Non-standard residues in 7oe3 #1  
---  
MG — magnesium ion  
ZN — zinc ion  
  

> open 7oeb 7oea 7och

Summary of feedback from opening 7oeb fetched from pdb  
---  
note | Fetching compressed mmCIF 7oeb from http://files.rcsb.org/download/7oeb.cif  
  
Summary of feedback from opening 7oea fetched from pdb  
---  
note | Fetching compressed mmCIF 7oea from http://files.rcsb.org/download/7oea.cif  
  
Summary of feedback from opening 7och fetched from pdb  
---  
note | Fetching compressed mmCIF 7och from http://files.rcsb.org/download/7och.cif  
  
7oeb title:  
Lassa virus L protein bound to 3' promoter RNA (well-resolved endonuclease)
[3END-ENDO] [more info...]  
  
Chain information for 7oeb #2  
---  
Chain | Description | UniProt  
E | 3' vRNA |   
L | RNA-directed RNA polymerase L | A0A3S8NV63_9VIRU 1-2217  
  
Non-standard residues in 7oeb #2  
---  
MG — magnesium ion  
ZN — zinc ion  
  
10 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.  
7oea title:  
Lassa virus L protein bound to 3' promoter RNA (well-resolved polymerase core)
[3END-CORE] [more info...]  
  
Chain information for 7oea #3  
---  
Chain | Description | UniProt  
E | 3' vRNA |   
L | RNA-directed RNA polymerase L | A0A3S8NV63_9VIRU 1-2217  
  
Non-standard residues in 7oea #3  
---  
MG — magnesium ion  
ZN — zinc ion  
  
10 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.  
7och title:  
Apo-structure of Lassa virus L protein (well-resolved polymerase core) [APO-
CORE] [more info...]  
  
Chain information for 7och #4  
---  
Chain | Description | UniProt  
L | RNA-directed RNA polymerase L | A0A3S8NV63_9VIRU 1-2217  
  
Non-standard residues in 7och #4  
---  
MG — magnesium ion  
ZN — zinc ion  
  

> mmaker #2-4 to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oe3, chain L (#1) with 7oeb, chain L (#2), sequence alignment
score = 9779.8  
RMSD between 839 pruned atom pairs is 1.425 angstroms; (across all 1420 pairs:
2.138)  
  
Matchmaker 7oe3, chain L (#1) with 7oea, chain L (#3), sequence alignment
score = 9820.6  
RMSD between 833 pruned atom pairs is 1.420 angstroms; (across all 1418 pairs:
2.078)  
  
Matchmaker 7oe3, chain L (#1) with 7och, chain L (#4), sequence alignment
score = 9472.6  
RMSD between 1158 pruned atom pairs is 0.531 angstroms; (across all 1175
pairs: 0.739)  
  

> hide #!4 models

> hide #!3 models

> hide #!2 models

> show #!2 models

> hide #!2 models

> show #!3 models

> hide #!3 models

> show #!4 models

> hide #!4 models

> mmaker #3 to #2

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oeb, chain L (#2) with 7oea, chain L (#3), sequence alignment
score = 10117.6  
RMSD between 1432 pruned atom pairs is 0.386 angstroms; (across all 1432
pairs: 0.386)  
  

> show #!2 models

> show #!3 models

> hide #!1 models

> close

> open 7oea

7oea title:  
Lassa virus L protein bound to 3' promoter RNA (well-resolved polymerase core)
[3END-CORE] [more info...]  
  
Chain information for 7oea #1  
---  
Chain | Description | UniProt  
E | 3' vRNA |   
L | RNA-directed RNA polymerase L | A0A3S8NV63_9VIRU 1-2217  
  
Non-standard residues in 7oea #1  
---  
MG — magnesium ion  
ZN — zinc ion  
  
10 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.  

> sequence chain #1/L

Alignment identifier is 1/L  

> select /L:1824

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select /L:1813-1824

98 atoms, 99 bonds, 12 residues, 1 model selected  

> select clear

> open /Users/gabriele/Desktop/L_protein/L_protein_pdb/7ojn.pdb

7ojn.pdb title:  
Lassa virus L protein In an elongation conformation [elongation] [more
info...]  
  
Chain information for 7ojn.pdb #2  
---  
Chain | Description  
D | No description available  
E R | No description available  
L | RNA-directed RNA polymerase L  
M | No description available  
  
Non-standard residues in 7ojn.pdb #2  
---  
2KH —
5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine  
MN — manganese (II) ion  
ZN — zinc ion  
  

> hide #!1 models

> select #2/D:1-12

242 atoms, 270 bonds, 12 residues, 1 model selected  

> ~select

Nothing selected  

> show #!2 atoms

> hide #!2 atoms

> show #!2 cartoons

> show #!1 models

> mmaker #2 to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea, chain L (#1) with 7ojn.pdb, chain L (#2), sequence alignment
score = 9873.4  
RMSD between 949 pruned atom pairs is 1.137 angstroms; (across all 1426 pairs:
20.036)  
  

> hide #!2 models

> open /Users/gabriele/Desktop/L_protein/L_protein_pdb/7ojl.pdb

7ojl.pdb title:  
Lassa virus L protein In A pre-initiation conformation [preinitiation] [more
info...]  
  
Chain information for 7ojl.pdb #3  
---  
Chain | Description  
D | 5' RNA  
E | 3' RNA  
L | RNA-directed RNA polymerase L  
  
Non-standard residues in 7ojl.pdb #3  
---  
MN — manganese (II) ion  
  

> open /Users/gabriele/Desktop/L_protein/L_protein_pdb/7ojk.pdb

7ojk.pdb title:  
Lassa virus L protein bound to the distal promoter duplex [distal- promoter]
[more info...]  
  
Chain information for 7ojk.pdb #4  
---  
Chain | Description  
D | 5' RNA  
E | 3' RNA  
L | RNA-directed RNA polymerase L  
  
Non-standard residues in 7ojk.pdb #4  
---  
ZN — zinc ion  
  

> open /Users/gabriele/Desktop/L_protein/L_protein_pdb/7ojj.pdb

7ojj.pdb title:  
Lassa virus L protein with endonuclease and C-terminal domains In close
proximity [mid-link] [more info...]  
  
Chain information for 7ojj.pdb #5  
---  
Chain | Description  
L | RNA-directed RNA polymerase L  
  
Non-standard residues in 7ojj.pdb #5  
---  
MG — magnesium ion  
ZN — zinc ion  
  

> open /Users/gabriele/Desktop/L_protein/L_protein_pdb/7oeb.pdb

7oeb.pdb title:  
Lassa virus L protein bound to 3' promoter RNA (well-resolved endonuclease)
[3END-ENDO] [more info...]  
  
Chain information for 7oeb.pdb #6  
---  
Chain | Description  
E | 3' VRNA  
L | RNA-directed RNA polymerase L  
  
Non-standard residues in 7oeb.pdb #6  
---  
MG — magnesium ion  
ZN — zinc ion  
  
10 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.  

> open /Users/gabriele/Desktop/L_protein/L_protein_pdb/7oe7.pdb

7oe7.pdb title:  
Apo-structure of lassa virus L protein (well-resolved α ribbon) [apo-ribbon]
[more info...]  
  
Chain information for 7oe7.pdb #7  
---  
Chain | Description  
L | RNA-directed RNA polymerase L  
  
Non-standard residues in 7oe7.pdb #7  
---  
MG — magnesium ion  
ZN — zinc ion  
  

> open /Users/gabriele/Desktop/L_protein/L_protein_pdb/7oe3.pdb

7oe3.pdb title:  
Apo-structure of lassa virus L protein (well-resolved endonuclease) [apo-ENDO]
[more info...]  
  
Chain information for 7oe3.pdb #8  
---  
Chain | Description  
L | RNA-directed RNA polymerase L  
  
Non-standard residues in 7oe3.pdb #8  
---  
MG — magnesium ion  
ZN — zinc ion  
  

> open /Users/gabriele/Desktop/L_protein/L_protein_pdb/7och.pdb

7och.pdb title:  
Apo-structure of lassa virus L protein (well-resolved polymerase core) [apo-
core] [more info...]  
  
Chain information for 7och.pdb #9  
---  
Chain | Description  
L | RNA-directed RNA polymerase L  
  
Non-standard residues in 7och.pdb #9  
---  
MG — magnesium ion  
ZN — zinc ion  
  

> open /Users/gabriele/Desktop/L_protein/L_protein_pdb/7ela.pdb

7ela.pdb title:  
Structure of lassa virus polymerase In complex with 3'-VRNA and Z mutant
(F36A) [more info...]  
  
Chain information for 7ela.pdb #10  
---  
Chain | Description  
A | RNA-directed RNA polymerase L  
B | ring finger protein Z  
C | 3-'VRNA promoter  
  
Non-standard residues in 7ela.pdb #10  
---  
MN — manganese (II) ion  
ZN — zinc ion  
  
14 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.  

> open /Users/gabriele/Desktop/L_protein/L_protein_pdb/7ckl.pdb

7ckl.pdb title:  
Structure of lassa virus polymerase bound to Z matrix protein [more info...]  
  
Chain information for 7ckl.pdb #11  
---  
Chain | Description  
A | RNA-directed RNA polymerase L  
B | ring finger protein Z  
  
Non-standard residues in 7ckl.pdb #11  
---  
MN — manganese (II) ion  
ZN — zinc ion  
  

> open /Users/gabriele/Desktop/L_protein/L_protein_pdb/6klc.pdb

6klc.pdb title:  
Structure of apo lassa virus polymerase [more info...]  
  
Chain information for 6klc.pdb #12  
---  
Chain | Description  
A | RNA-directed RNA polymerase L  
  
Non-standard residues in 6klc.pdb #12  
---  
MN — manganese (II) ion  
  

> hide #!12 models

> hide #!11 models

> hide #!10 models

> hide #!9 models

> hide #!8 models

> hide #!7 models

> hide #!6 models

> hide #!5 models

> hide #!4 models

> mmaker #3 to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea, chain L (#1) with 7ojl.pdb, chain L (#3), sequence alignment
score = 9518.8  
RMSD between 1040 pruned atom pairs is 0.699 angstroms; (across all 1210
pairs: 3.005)  
  

> hide #!3 models

> show #!2 models

Cell requested for row 0 is out of bounds for table with 0 rows! Resizing
table model.  

> select #2/R:14-24

231 atoms, 256 bonds, 11 residues, 1 model selected  

> select #2/E:10-16

149 atoms, 165 bonds, 7 residues, 1 model selected  

> show sel atoms

> style sel stick

Changed 149 atom styles  

> nucleotides sel tube/slab shape box

> hide #2.2 models

> show #2.2 models

> hide #!2 models

> show #!3 models

> hide #!3 models

> show #!4 models

> mmaker #4 to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea, chain L (#1) with 7ojk.pdb, chain L (#4), sequence alignment
score = 9604  
RMSD between 729 pruned atom pairs is 1.363 angstroms; (across all 1382 pairs:
19.322)  
  

> hide #!4.2 models

> close #4

> show #!5 models

> mmaker #5 to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea, chain L (#1) with 7ojj.pdb, chain L (#5), sequence alignment
score = 9703.6  
RMSD between 767 pruned atom pairs is 1.390 angstroms; (across all 1372 pairs:
19.261)  
  

> hide #!5.2 models

> hide #!5 models

> open /Users/gabriele/Desktop/L_protein/L_protein_pdb/7ojk.pdb

7ojk.pdb title:  
Lassa virus L protein bound to the distal promoter duplex [distal- promoter]
[more info...]  
  
Chain information for 7ojk.pdb #4  
---  
Chain | Description  
D | 5' RNA  
E | 3' RNA  
L | RNA-directed RNA polymerase L  
  
Non-standard residues in 7ojk.pdb #4  
---  
ZN — zinc ion  
  

> hide #!4 models

> show #!6 models

> hide #!6.2 models

> hide #!6 models

> show #!7 models

> mmaker #7 to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea, chain L (#1) with 7oe7.pdb, chain L (#7), sequence alignment
score = 9417.4  
RMSD between 758 pruned atom pairs is 1.402 angstroms; (across all 1223 pairs:
3.071)  
  

> hide #!7.2 models

> hide #!7 models

> show #!8 models

> mmaker #8 to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea, chain L (#1) with 7oe3.pdb, chain L (#8), sequence alignment
score = 9820.6  
RMSD between 833 pruned atom pairs is 1.420 angstroms; (across all 1418 pairs:
2.078)  
  

> hide #!8.2 models

> show #!8.2 models

> hide #!8 models

> show #!9 models

> show #!2 models

> hide #!2 models

> hide #!9 models

> show #!10 models

> mmaker #9 to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea, chain L (#1) with 7och.pdb, chain L (#9), sequence alignment
score = 9460.6  
RMSD between 806 pruned atom pairs is 1.406 angstroms; (across all 1165 pairs:
1.871)  
  

> mmaker #10 to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea, chain L (#1) with 7ela.pdb, chain A (#10), sequence alignment
score = 8964.8  
RMSD between 1232 pruned atom pairs is 0.843 angstroms; (across all 1361
pairs: 1.292)  
  

> hide #!1 models

> show #!1 models

> hide #!10 models

> show #!11 models

> mmaker #11 to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea, chain L (#1) with 7ckl.pdb, chain A (#11), sequence alignment
score = 8904.2  
RMSD between 1170 pruned atom pairs is 0.925 angstroms; (across all 1317
pairs: 1.411)  
  

> hide #!11.2 models

> hide #!11 models

> show #!11 models

> show #!11.2 models

> show #!12 models

> hide #!11 models

> mmaker #12 to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea, chain L (#1) with 6klc.pdb, chain A (#12), sequence alignment
score = 8751.6  
RMSD between 997 pruned atom pairs is 1.084 angstroms; (across all 1319 pairs:
2.921)  
  

> hide #!12.2 models

> show #!12.2 models

> hide #!12.2 models

> show #!12.2 models

> hide #!12 models

> show #!11 models

> select #11/A:1-1300

7853 atoms, 7978 bonds, 13 pseudobonds, 1004 residues, 2 models selected  

> select #11/A:1-1200

7133 atoms, 7241 bonds, 11 pseudobonds, 914 residues, 2 models selected  

> select #11/A:1-1220

7264 atoms, 7376 bonds, 11 pseudobonds, 930 residues, 2 models selected  

> select #11/A:90-1220

6608 atoms, 6713 bonds, 10 pseudobonds, 845 residues, 2 models selected  

> ui tool show ""Show Sequence Viewer""

> sequence chain #11/A

Alignment identifier is 11/A  

> select clear

> select #11/A:1

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select #11/A:1-195

1493 atoms, 1514 bonds, 1 pseudobond, 191 residues, 2 models selected  

> select
> #11/A:1-15,21-31,38-58,68-76,108-132,153-168,171-177,179-191,212-221,232-252,262-272,283-292,295-301,320-332,340-363,377-379,384-401,416-436,440-445,454-461,493-510,578-582,589-607,612-630,632-650,657-663,669-686,693-711,717-737,748-762,782-795,847-862,873-890,902-910,916-929,1139-1159,1167-1184,1195-1211,1225-1238,1244-1261,1269-1280,1299-1323,1340-1368,1398-1409,1414-1433,1435-1453,1475-1488,1490-1508,1512-1520,1523-1536,1581-1586,1614-1626,1640-1650,1678-1681,1686-1701,1703-1707,1744-1759,1782-1791

6685 atoms, 6743 bonds, 842 residues, 1 model selected  

> select #11/A:1

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select #11/A:1-306

2371 atoms, 2406 bonds, 2 pseudobonds, 297 residues, 2 models selected  

> select #11/A:1

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select #11/A:1-223

1677 atoms, 1700 bonds, 2 pseudobonds, 214 residues, 2 models selected  

> select #11/A:721-722

17 atoms, 16 bonds, 2 residues, 1 model selected  

> select #11/A:721-800

621 atoms, 634 bonds, 80 residues, 1 model selected  

> select
> #11/A:1-15,21-31,38-58,68-76,108-132,153-168,171-177,179-191,212-221,232-252,262-272,283-292,295-301,320-332,340-363,377-379,384-401,416-436,440-445,454-461,493-510,578-582,589-607,612-630,632-650,657-663,669-686,693-711,717-737,748-762,782-795,847-862,873-890,902-910,916-929,1139-1159,1167-1184,1195-1211,1225-1238,1244-1261,1269-1280,1299-1323,1340-1368,1398-1409,1414-1433,1435-1453,1475-1488,1490-1508,1512-1520,1523-1536,1581-1586,1614-1626,1640-1650,1678-1681,1686-1701,1703-1707,1744-1759,1782-1791

6685 atoms, 6743 bonds, 842 residues, 1 model selected  

> select #11/A:846

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select #11/A:846-931

322 atoms, 318 bonds, 3 pseudobonds, 65 residues, 2 models selected  

> select #11/A:721

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select #11/A:721-931

943 atoms, 952 bonds, 4 pseudobonds, 145 residues, 2 models selected  

> select #11/A:721-931

943 atoms, 952 bonds, 4 pseudobonds, 145 residues, 2 models selected  

> select #11/A:766-767

8 atoms, 7 bonds, 2 residues, 1 model selected  

> select #11/A:766-931

578 atoms, 579 bonds, 4 pseudobonds, 100 residues, 2 models selected  

> select #11/A:1091

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select #11/A:1091-1123

247 atoms, 251 bonds, 33 residues, 1 model selected  

> select #11/A:1126-1127

18 atoms, 17 bonds, 2 residues, 1 model selected  

> select #11/A:1126-1213

705 atoms, 718 bonds, 88 residues, 1 model selected  

> select #11/A:721

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select #11/A:721-765

365 atoms, 372 bonds, 45 residues, 1 model selected  

> select #11/A:541

11 atoms, 11 bonds, 1 residue, 1 model selected  

> select #11/A:541-765

1854 atoms, 1890 bonds, 225 residues, 1 model selected  

> select #11/A:718-719

19 atoms, 18 bonds, 2 residues, 1 model selected  

> select #11/A:718-931

969 atoms, 978 bonds, 4 pseudobonds, 148 residues, 2 models selected  

> select #11/A:1240-1241

15 atoms, 14 bonds, 2 residues, 1 model selected  

> select #11/A:1241-1305

473 atoms, 482 bonds, 1 pseudobond, 61 residues, 2 models selected  

> select #11/A:224-717

3623 atoms, 3681 bonds, 4 pseudobonds, 442 residues, 2 models selected  

> delete sel

> select #11/A:932-1239

1143 atoms, 1167 bonds, 1 pseudobond, 143 residues, 2 models selected  

> delete sel

> select #11/A:1287-2217

3389 atoms, 3463 bonds, 4 pseudobonds, 425 residues, 2 models selected  

> delete sel

> hide #!1 models

Drag select of 34 atoms, 49 residues, 8 pseudobonds, 23 bonds  

> delete sel

> show #!1 models

> mmaker #11 to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea, chain L (#1) with 7ckl.pdb, chain A (#11), sequence alignment
score = 7692.2  
RMSD between 276 pruned atom pairs is 1.001 angstroms; (across all 336 pairs:
1.707)  
  

> save
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7ckl_alphabundle.pdb
> models #11

> close #11

> open 7ojn

7ojn title:  
Lassa virus L protein in an elongation conformation [ELONGATION] [more
info...]  
  
Chain information for 7ojn #11  
---  
Chain | Description | UniProt  
D | 5' RNA |   
E R | 3' RNA |   
L | RNA-directed RNA polymerase L | A0A3S8NV63_9VIRU 1-2217  
M | product RNA |   
  
Non-standard residues in 7ojn #11  
---  
2KH —
5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine  
MN — manganese (II) ion  
ZN — zinc ion  
  

> hide #!1 models

> show #!11 cartoons

> hide #!11 atoms

> mm#11 to #1

Unknown command: mm#11 to #1  

> mmaker #11 to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea, chain L (#1) with 7ojn, chain L (#11), sequence alignment
score = 9873.4  
RMSD between 949 pruned atom pairs is 1.137 angstroms; (across all 1426 pairs:
20.036)  
  

> show #!1 models

> open
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7ckl_alphabundle.pdb

7ckl_alphabundle.pdb title:  
Structure of lassa virus polymerase bound to Z matrix protein [more info...]  
  
Chain information for 7ckl_alphabundle.pdb #13  
---  
Chain | Description  
A | RNA-directed RNA polymerase L  
  

> hide #!13 models

> show #!13 models

> hide #!13.1 models

> show #!13.1 models

> hide #!13.1 models

> hide #!13 models

> show #!13.1 models

> hide #!13 models

Cell requested for row 12 is out of bounds for table with 14 rows! Resizing
table model.  

> hide #11.3 models

> select #11/A:1-430

Nothing selected  

> select #11/L:1-430

3406 atoms, 3460 bonds, 2 pseudobonds, 418 residues, 2 models selected  

> delete sel

> select #11/L:620-2217

11240 atoms, 11480 bonds, 5 pseudobonds, 1403 residues, 2 models selected  

> delete sel

> mmaker #11 to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea, chain L (#1) with 7ojn, chain L (#11), sequence alignment
score = 8212  
RMSD between 170 pruned atom pairs is 0.741 angstroms; (across all 174 pairs:
0.813)  
  

> hide #!1 models

> show #!11 atoms

Drag select of 340 atoms, 20 residues, 24 pseudobonds, 182 bonds  

> delete sel

Drag select of 1 atoms  

> delete sel

> style #!11 stick

Changed 1884 atom styles  

> hide #!11 atoms

Drag select of 7 residues  

> delete sel

> select add #11/D:12

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select add #11/D:11

28 atoms, 29 bonds, 2 residues, 1 model selected  

> select add #11/D:10

51 atoms, 54 bonds, 3 residues, 1 model selected  

> select add #11/D:9

74 atoms, 79 bonds, 4 residues, 1 model selected  
Drag select of 8 residues  

> delete sel

> show #!11 atoms

> hide #!11 atoms

> show #!1 models

> mmaker #11 to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea, chain L (#1) with 7ojn, chain L (#11), sequence alignment
score = 8212  
RMSD between 170 pruned atom pairs is 0.741 angstroms; (across all 174 pairs:
0.813)  
  

> save
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7ojn_430-620.pdb
> models #11

> hide #!11 models

> show #!2 models

> show #!13 models

> hide #!13 models

> select #2/L:500-1000

3171 atoms, 3225 bonds, 2 pseudobonds, 393 residues, 2 models selected  

> select #2/L:500-900

3026 atoms, 3078 bonds, 1 pseudobond, 377 residues, 2 models selected  

> select #2/L:500-800

2434 atoms, 2480 bonds, 301 residues, 1 model selected  

> hide #!1 models

> select #2/L:1-499

3950 atoms, 4014 bonds, 2 pseudobonds, 487 residues, 2 models selected  

> delete sel

> select #2/L:801-2217

9758 atoms, 9968 bonds, 5 pseudobonds, 1222 residues, 2 models selected  

> delete sel

Drag select of 20 residues, 2 shapes  

> delete sel

Drag select of 16 atoms, 7 residues, 12 bonds, 15 shapes  

> delete sel

> style #!2 stick

Changed 2711 atom styles  

> show #!2 atoms

Drag select of 1 atoms  
Drag select of 3 atoms  

> delete sel

Drag select of 31 atoms, 4 pseudobonds, 30 bonds  

> delete sel

> style #!2 sphere

Changed 2676 atom styles  

> style #!2 stick

Changed 2676 atom styles  

> hide #!2 atoms

> show #!1 models

> show #!13 models

> hide #!13 models

> mm#2 to #1

Unknown command: mm#2 to #1  

> mmaker #2 to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea, chain L (#1) with 7ojn.pdb, chain L (#2), sequence alignment
score = 8428.6  
RMSD between 285 pruned atom pairs is 0.846 angstroms; (across all 289 pairs:
0.886)  
  

> save
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7ojn_500-800_5hook.pdb
> models #2

> show #!13 models

> show #!11 models

> hide #!2 models

> hide #!13.1 models

> open 7ojn

7ojn title:  
Lassa virus L protein in an elongation conformation [ELONGATION] [more
info...]  
  
Chain information for 7ojn #14  
---  
Chain | Description | UniProt  
D | 5' RNA |   
E R | 3' RNA |   
L | RNA-directed RNA polymerase L | A0A3S8NV63_9VIRU 1-2217  
M | product RNA |   
  
Non-standard residues in 7ojn #14  
---  
2KH —
5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine  
MN — manganese (II) ion  
ZN — zinc ion  
  

Cell requested for row 0 is out of bounds for table with 14 rows! Resizing
table model.  

> show #!1,11,13-14 cartoons

> hide #!1,11,13-14 atoms

> mmaker #14 to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea, chain L (#1) with 7ojn, chain L (#14), sequence alignment
score = 9873.4  
RMSD between 949 pruned atom pairs is 1.137 angstroms; (across all 1426 pairs:
20.036)  
  

> close #14

> show #!3 models

> hide #!3 models

> show #!2 models

> hide #!2 models

> show #!3 models

> hide #!3 models

> show #!4 models

> mmaker #4 to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea, chain L (#1) with 7ojk.pdb, chain L (#4), sequence alignment
score = 9604  
RMSD between 729 pruned atom pairs is 1.363 angstroms; (across all 1382 pairs:
19.322)  
  

> hide #!4 models

> show #!5 models

> select #5/L:250- 380

Expected an objects specifier or a keyword  

> select #5/L:250-360

873 atoms, 888 bonds, 1 pseudobond, 105 residues, 2 models selected  

> select #5/L:250-3800

12324 atoms, 12565 bonds, 16 pseudobonds, 1538 residues, 3 models selected  

> select #5/L:250-380

1030 atoms, 1049 bonds, 1 pseudobond, 125 residues, 2 models selected  

> select #5/L:1-249

2006 atoms, 2036 bonds, 249 residues, 1 model selected  

> delete sel

> select #5/L:381-2217

11292 atoms, 11515 bonds, 10 pseudobonds, 1411 residues, 2 models selected  

> de33el sel

Unknown command: de33el sel  

> delete sel

> hide #!13 models

> hide #!11 models

> mmaker #5 to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea, chain L (#1) with 7ojj.pdb, chain L (#5), sequence alignment
score = 8191  
RMSD between 90 pruned atom pairs is 1.161 angstroms; (across all 115 pairs:
1.656)  
  

> hide #!1 models

> show #!5 atoms

> select clear

Drag select of 93 atoms, 21 residues, 78 bonds  

> delete sel

> hide #!5 atoms

> show #!5 atoms

> hide #!5 atoms

> show #!1 models

> mmaker #5 to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea, chain L (#1) with 7ojj.pdb, chain L (#5), sequence alignment
score = 8169.4  
RMSD between 90 pruned atom pairs is 1.161 angstroms; (across all 94 pairs:
1.321)  
  

> save
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7ojj_271-380.pdb
> models #5

> show #!13 models

> show #!12 models

> hide #!12 models

> show #!11 models

> show #!8 models

> hide #!8 models

> show #!6 models

> close #6

> show #!7 models

> hide #!7 models

> show #!8 models

> hide #!8 models

> show #!9 models

> hide #!9.2 models

> hide #!5 models

> select #9/L:260-380

939 atoms, 957 bonds, 1 pseudobond, 114 residues, 2 models selected  

> select #9/L:1-259

497 atoms, 503 bonds, 61 residues, 1 model selected  

> delete sel

> select #9/L:381-2217

8078 atoms, 8243 bonds, 9 pseudobonds, 1006 residues, 2 models selected  

> delete sel

> mmaker #9 to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea, chain L (#1) with 7och.pdb, chain L (#9), sequence alignment
score = 8173  
RMSD between 88 pruned atom pairs is 1.129 angstroms; (across all 104 pairs:
1.479)  
  

> hide #!1 models

> hide #!11 models

> hide #!13 models

Drag select of 1 atoms  

> delete sel

> show #!1 models

> save
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7och_260-380.pdb
> models #9

> hide #!9 models

> show #!10 models

> hide #!10.2 models

> show #!8 models

> hide #!8 models

> show #!7 models

> hide #!1 models

> hide #!10 models

> show #!1 models

> show #!13 models

> show #!7.2 models

> hide #!7.2 models

> show #!7.2 models

> hide #!7.2 models

> show #!7.2 models

> select #1/:L1070-1080

Expected an objects specifier or a keyword  

> select #1/:A1070-1080

Expected an objects specifier or a keyword  

> select #1/L:1070-1080

Nothing selected  

> select #7/L:781-1069

1127 atoms, 1140 bonds, 3 pseudobonds, 141 residues, 2 models selected  

> close #7

> show #!2 models

> hide #!2 models

> show #!4 models

> hide #!4 models

> show #!11 models

> show #!9 models

> show #!2 models

> hide #!2 models

> show #!3 models

> hide #!3 models

> show #!4 models

> hide #!4 models

> show #!5 models

> hide #!5 models

> show #!8 models

> hide #!8 models

> show #!12 models

> show #!8 models

> show #!5 models

> hide #!5 models

> show #!5 models

> hide #!5 models

> show #!10 models

> hide #!10 models

> hide #!12 models

> hide #!9 models

> hide #!11 models

> hide #!13 models

> show #!10 models

> hide #!10 models

> show #!12 models

> hide #!12 models

> select ~sel & ##selected

Nothing selected  

> select #8/L:1520-1790

1891 atoms, 1936 bonds, 3 pseudobonds, 239 residues, 2 models selected  

> select #8/L:1-1519

9750 atoms, 9932 bonds, 5 pseudobonds, 1207 residues, 2 models selected  

> delete sel

> select #8/L:1791-2217

261 atoms, 264 bonds, 1 pseudobond, 32 residues, 2 models selected  

> delete sel

> hide #!1 models

Drag select of 1 atoms  

> delete sel

> style #!8 sphere

Changed 1891 atom styles  

> show #!8 atoms

> style #!8 stick

Changed 1891 atom styles  

> hide #!8 atoms

> show #!1 models

> mm#8 to #1

Unknown command: mm#8 to #1  

> mmaker #8 to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea, chain L (#1) with 7oe3.pdb, chain L (#8), sequence alignment
score = 8262.4  
RMSD between 189 pruned atom pairs is 1.188 angstroms; (across all 207 pairs:
1.350)  
  

> save
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7oe3_1520-1790.pdb
> models #8

> show #!13 models

> show #!12 models

> hide #!12 models

> show #!11 models

> show #!9 models

> show #!2 models

> show #!3 models

> hide #!3 models

> show #!4 models

> hide #!4 models

> show #!5 models

> hide #!5 models

> show #!10 models

> hide #!10 models

> hide #!1 models

> hide #!2 models

> show #!2 models

> show #!3 models

> hide #!3 models

> close #3

> show #!4 models

> hide #!4 models

> close #4

> show #!5 models

> hide #!5 models

> close #5

> show #!10 models

> hide #!10 models

> close #10

> show #!12 models

> hide #!12 models

> close #12

> show #!1 models

> mmaker #2 to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea, chain L (#1) with 7ojn.pdb, chain L (#2), sequence alignment
score = 8428.6  
RMSD between 285 pruned atom pairs is 0.846 angstroms; (across all 289 pairs:
0.886)  
  

> mmaker #8 to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea, chain L (#1) with 7oe3.pdb, chain L (#8), sequence alignment
score = 8262.4  
RMSD between 189 pruned atom pairs is 1.188 angstroms; (across all 207 pairs:
1.350)  
  

> mmaker #9 to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea, chain L (#1) with 7och.pdb, chain L (#9), sequence alignment
score = 8173  
RMSD between 88 pruned atom pairs is 1.129 angstroms; (across all 104 pairs:
1.479)  
  

> mmaker #11 to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea, chain L (#1) with 7ojn, chain L (#11), sequence alignment
score = 8212  
RMSD between 170 pruned atom pairs is 0.741 angstroms; (across all 174 pairs:
0.813)  
  

> mmaker #13 to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea, chain L (#1) with 7ckl_alphabundle.pdb, chain A (#13),
sequence alignment score = 7692.2  
RMSD between 276 pruned atom pairs is 1.001 angstroms; (across all 336 pairs:
1.707)  
  

> hide #!13 models

> hide #!11 models

> hide #!9 models

> hide #!8 models

> hide #!2 models

> show #!2 models

> save
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7ojn_500-800_5hook.pdb
> models #2

> hide #!2 models

> show #!8 models

> save
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7oe3_1520-1790.pdb
> models #8

> hide #!8 models

> show #!9 models

> save
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7och_260-380.pdb
> models #9

> hide #!9 models

> show #!11 models

> save
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7ojn_430-620.pdb
> models #11

> hide #!11 models

> show #!13 models

> save
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7ckl_alphabundle.pdb
> models #13

> hide #!13 models

> open 7ojn

7ojn title:  
Lassa virus L protein in an elongation conformation [ELONGATION] [more
info...]  
  
Chain information for 7ojn #3  
---  
Chain | Description | UniProt  
D | 5' RNA |   
E R | 3' RNA |   
L | RNA-directed RNA polymerase L | A0A3S8NV63_9VIRU 1-2217  
M | product RNA |   
  
Non-standard residues in 7ojn #3  
---  
2KH —
5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine  
MN — manganese (II) ion  
ZN — zinc ion  
  

> hide #!1,3 atoms

> show #!1,3 cartoons

> mmaker #3 to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea, chain L (#1) with 7ojn, chain L (#3), sequence alignment
score = 9873.4  
RMSD between 949 pruned atom pairs is 1.137 angstroms; (across all 1426 pairs:
20.036)  
  

> select #3/L:1550-1840

2161 atoms, 2209 bonds, 2 pseudobonds, 271 residues, 2 models selected  

> select #3/L:1-1549

11061 atoms, 11262 bonds, 5 pseudobonds, 1371 residues, 2 models selected  

> delete sel

> select #3/L:1841-2217

2920 atoms, 2991 bonds, 368 residues, 1 model selected  

> delete sel

> mmaker #3 to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea, chain L (#1) with 7ojn, chain L (#3), sequence alignment
score = 8247.4  
RMSD between 131 pruned atom pairs is 0.860 angstroms; (across all 210 pairs:
5.191)  
  

> hide #!1 models

Drag select of 12 residues  

> select up

3010 atoms, 3144 bonds, 317 residues, 1 model selected  

> select down

242 atoms, 12 residues, 1 model selected  

> delete sel

Drag select of 7 residues  

> delete sel

Drag select of 6 residues  

> delete sel

Drag select of 5 residues  

> delete sel

Drag select of 3 residues  

> delete sel

Drag select of 5 residues  

> delete sel

> show #!3 atoms

Drag select of 31 atoms, 4 pseudobonds, 30 bonds  

> delete sel

Drag select of 1 atoms  

> delete sel

Drag select of 1 atoms  

> delete sel

Drag select of 2 atoms  

> delete sel

Drag select of 12 atoms, 15 bonds  

> delete sel

> select #3/M:18@O2'

1 atom, 1 residue, 1 model selected  

> select add #3/M:18@O4

2 atoms, 1 residue, 1 model selected  

> delete sel

> style #!3 stick

Changed 2167 atom styles  

> hide #!3 atoms

> show #!1 models

> mmaker #3 to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea, chain L (#1) with 7ojn, chain L (#3), sequence alignment
score = 8247.4  
RMSD between 131 pruned atom pairs is 0.860 angstroms; (across all 210 pairs:
5.191)  
  

> select #3/L:1800-2217

290 atoms, 294 bonds, 1 pseudobond, 35 residues, 2 models selected  

> delete sel

> mmaker #3 to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea, chain L (#1) with 7ojn, chain L (#3), sequence alignment
score = 8225.8  
RMSD between 113 pruned atom pairs is 0.795 angstroms; (across all 186 pairs:
5.325)  
  

> hide #!3 models

> show #!13 models

> ui tool show ""Show Sequence Viewer""

> sequence chain #13/A

Alignment identifier is 13/A  

> select
> #13/A:1-15,21-31,38-58,68-76,108-132,153-168,171-177,179-191,212-221,718-737,748-762,782-795,847-862,873-890,902-910,916-929,1244-1261,1269-1280

1928 atoms, 1939 bonds, 263 residues, 1 model selected  

> select clear

> select #13/A:61-62,90-94,97-105,136-144,207-208,1240-1242

241 atoms, 239 bonds, 30 residues, 1 model selected  

> select clear

> ui tool show ""Show Sequence Viewer""

> hide #!13 models

> close #2-3,8-9,11

> open
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7och_260-380.pdb

7och_260-380.pdb title:  
Apo-structure of lassa virus L protein (well-resolved polymerase core) [apo-
core] [more info...]  
  
Chain information for 7och_260-380.pdb #2  
---  
Chain | Description  
L | RNA-directed RNA polymerase L  
  
Non-standard residues in 7och_260-380.pdb #2  
---  
ZN — zinc ion  
  

> open
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7oe3_1520-1790.pdb

7oe3_1520-1790.pdb title:  
Apo-structure of lassa virus L protein (well-resolved endonuclease) [apo-ENDO]
[more info...]  
  
Chain information for 7oe3_1520-1790.pdb #3  
---  
Chain | Description  
L | RNA-directed RNA polymerase L  
  

> open
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7ojn_430-620.pdb

Chain information for 7ojn_430-620.pdb #4  
---  
Chain | Description  
L | No description available  
  

> ui tool show ""Show Sequence Viewer""

> sequence chain #2/L

Alignment identifier is 2/L  

> select #2/L:262-272,284-293,296-302,311-319,321-335,345-365

625 atoms, 634 bonds, 73 residues, 1 model selected  

> select clear

> open
> /Users/gabriele/Desktop/output/AF3_INFERENCE_WITH_TEMPLATES/bantou_dsrna_7ojk_7ojk/bantou_dsrna_7ojk_data_7ojk/bantou_dsrna_7ojk_data_7ojk_model.cif

Chain information for bantou_dsrna_7ojk_data_7ojk_model.cif #5  
---  
Chain | Description  
A | .  
B | .  
C | .  
  
Color bantou_dsrna_7ojk_data_7ojk_model.cif by residue attribute pLDDT_score  
Computing secondary structure  

> open
> /Users/gabriele/Desktop/output/AF3_INFERENCE_WITHOUT_TEMPLATES/bantou_dsrna_7ojk/bantou_dsrna_7ojk/bantou_dsrna_7ojk_model.cif

Chain information for bantou_dsrna_7ojk_model.cif #6  
---  
Chain | Description  
A | .  
B | .  
C | .  
  
Color bantou_dsrna_7ojk_model.cif by residue attribute pLDDT_score  
Computing secondary structure  

> hide #6 models

> hide #5 models

> hide #4 models

> hide #!3 models

> hide #!2 models

> hide #!1 models

> show #5 models

> show #6 models

> hide #6 models

> hide #5 models

> show #6 models

> view clip false

> hide #6 models

> show #5 models

> show #6 models

> mmaker #5 to #6

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker bantou_dsrna_7ojk_model.cif, chain A (#6) with
bantou_dsrna_7ojk_data_7ojk_model.cif, chain A (#5), sequence alignment score
= 11351.2  
RMSD between 2026 pruned atom pairs is 0.933 angstroms; (across all 2217
pairs: 1.957)  
  

> hide #6 models

> show #6 models

> hide #6 models

> show #6 models

> hide #6 models

> open
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7ojk/250428/bantou289.B99990002.pdb

Chain information for bantou289.B99990002.pdb #7  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
  
Computing secondary structure  

> mmaker #5-6 to #7

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker bantou289.B99990002.pdb, chain A (#7) with
bantou_dsrna_7ojk_data_7ojk_model.cif, chain A (#5), sequence alignment score
= 10760.2  
RMSD between 1012 pruned atom pairs is 1.250 angstroms; (across all 2217
pairs: 24.705)  
  
Matchmaker bantou289.B99990002.pdb, chain A (#7) with
bantou_dsrna_7ojk_model.cif, chain A (#6), sequence alignment score = 10729.6  
RMSD between 857 pruned atom pairs is 1.324 angstroms; (across all 2217 pairs:
24.513)  
  

> view clip false

> hide #7 models

> show #7 models

> hide #5 models

> show #6 models

> hide #6 models

> show #5 models

> hide #7 models

> show #7 models

> hide #5 models

> show #5 models

> hide #7 models

> hide #5 models

> show #!1 models

> show #7 models

> mmaker #7 tp #1

> matchmaker #7 tp #1

Expected a keyword  

> mmaker #7 to #1

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea, chain L (#1) with bantou289.B99990002.pdb, chain A (#7),
sequence alignment score = 9881.8  
RMSD between 833 pruned atom pairs is 1.244 angstroms; (across all 1432 pairs:
19.008)  
  

> hide #7 models

> show #!2 models

> show #!3 models

> show #4 models

> open
> /Users/gabriele/Desktop/output/AF3_INFERENCE_WITH_TEMPLATES/bantou_dsrna_7ojk_7ojk/bantou_dsrna_7ojk_data_7ojk/seed-1_sample-0/model.cif

Chain information for model.cif #8  
---  
Chain | Description  
A | .  
B | .  
C | .  
  
Color model.cif by residue attribute pLDDT_score  
Computing secondary structure  

> hide #4 models

> hide #!3 models

> hide #!2 models

> hide #!1 models

> open
> /Users/gabriele/Desktop/output/AF3_INFERENCE_WITH_TEMPLATES/bantou_dsrna_7ojk_7ojk/bantou_dsrna_7ojk_data_7ojk/seed-1_sample-1/model.cif

Chain information for model.cif #9  
---  
Chain | Description  
A | .  
B | .  
C | .  
  
Color model.cif by residue attribute pLDDT_score  
Computing secondary structure  

> open
> /Users/gabriele/Desktop/output/AF3_INFERENCE_WITH_TEMPLATES/bantou_dsrna_7ojk_7ojk/bantou_dsrna_7ojk_data_7ojk/seed-1_sample-2/model.cif

Chain information for model.cif #10  
---  
Chain | Description  
A | .  
B | .  
C | .  
  
Color model.cif by residue attribute pLDDT_score  
Computing secondary structure  

> open
> /Users/gabriele/Desktop/output/AF3_INFERENCE_WITH_TEMPLATES/bantou_dsrna_7ojk_7ojk/bantou_dsrna_7ojk_data_7ojk/seed-1_sample-3/model.cif

Chain information for model.cif #11  
---  
Chain | Description  
A | .  
B | .  
C | .  
  
Color model.cif by residue attribute pLDDT_score  
Computing secondary structure  

> open
> /Users/gabriele/Desktop/output/AF3_INFERENCE_WITH_TEMPLATES/bantou_dsrna_7ojk_7ojk/bantou_dsrna_7ojk_data_7ojk/seed-1_sample-4/model.cif

Chain information for model.cif #12  
---  
Chain | Description  
A | .  
B | .  
C | .  
  
Color model.cif by residue attribute pLDDT_score  
Computing secondary structure  

> hide #9 models

> hide #10 models

> hide #11 models

> hide #12 models

> show #9 models

> hide #8 models

> hide #9 models

> show #10 models

> hide #10 models

> show #11 models

> hide #11 models

> show #12 models

> close #5-6,8-12

> open
> /Users/gabriele/Desktop/out/_L_protein_Bantou289_m_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb

Chain information for
_L_protein_Bantou289_m_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb
#5  
---  
Chain | Description  
A | No description available  
  

> open
> /Users/gabriele/Desktop/out/_L_protein_Bantou289_m_unrelaxed_rank_002_alphafold2_ptm_model_1_seed_000.pdb

Chain information for
_L_protein_Bantou289_m_unrelaxed_rank_002_alphafold2_ptm_model_1_seed_000.pdb
#6  
---  
Chain | Description  
A | No description available  
  

> open
> /Users/gabriele/Desktop/out/_L_protein_Bantou289_m_unrelaxed_rank_003_alphafold2_ptm_model_4_seed_000.pdb

Chain information for
_L_protein_Bantou289_m_unrelaxed_rank_003_alphafold2_ptm_model_4_seed_000.pdb
#8  
---  
Chain | Description  
A | No description available  
  

> open
> /Users/gabriele/Desktop/out/_L_protein_Bantou289_m_unrelaxed_rank_004_alphafold2_ptm_model_3_seed_000.pdb

Chain information for
_L_protein_Bantou289_m_unrelaxed_rank_004_alphafold2_ptm_model_3_seed_000.pdb
#9  
---  
Chain | Description  
A | No description available  
  

> open
> /Users/gabriele/Desktop/out/_L_protein_Bantou289_m_unrelaxed_rank_005_alphafold2_ptm_model_5_seed_000.pdb

Chain information for
_L_protein_Bantou289_m_unrelaxed_rank_005_alphafold2_ptm_model_5_seed_000.pdb
#10  
---  
Chain | Description  
A | No description available  
  
Computing secondary structure  

> hide #6 models

> hide #5 models

> hide #10 models

> hide #9 models

> hide #8 models

> show #5 models

> mmaker #5-6 to #7

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker bantou289.B99990002.pdb, chain A (#7) with
_L_protein_Bantou289_m_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb,
chain A (#5), sequence alignment score = 10852  
RMSD between 1217 pruned atom pairs is 0.844 angstroms; (across all 2217
pairs: 2.345)  
  
Matchmaker bantou289.B99990002.pdb, chain A (#7) with
_L_protein_Bantou289_m_unrelaxed_rank_002_alphafold2_ptm_model_1_seed_000.pdb,
chain A (#6), sequence alignment score = 10837  
RMSD between 1561 pruned atom pairs is 0.967 angstroms; (across all 2217
pairs: 1.968)  
  

> mmaker #8-10 to #7

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker bantou289.B99990002.pdb, chain A (#7) with
_L_protein_Bantou289_m_unrelaxed_rank_003_alphafold2_ptm_model_4_seed_000.pdb,
chain A (#8), sequence alignment score = 10638.7  
RMSD between 792 pruned atom pairs is 1.322 angstroms; (across all 2217 pairs:
20.124)  
  
Matchmaker bantou289.B99990002.pdb, chain A (#7) with
_L_protein_Bantou289_m_unrelaxed_rank_004_alphafold2_ptm_model_3_seed_000.pdb,
chain A (#9), sequence alignment score = 10607.2  
RMSD between 731 pruned atom pairs is 1.265 angstroms; (across all 2217 pairs:
15.934)  
  
Matchmaker bantou289.B99990002.pdb, chain A (#7) with
_L_protein_Bantou289_m_unrelaxed_rank_005_alphafold2_ptm_model_5_seed_000.pdb,
chain A (#10), sequence alignment score = 10703.8  
RMSD between 901 pruned atom pairs is 1.260 angstroms; (across all 2217 pairs:
23.028)  
  

> show #6 models

> hide #5 models

> hide #6 models

> show #8 models

> hide #8 models

> show #9 models

> show #10 models

> hide #10 models

> hide #9 models

> show #5 models

> show #7 models

> show #6 models

> show #8 models

> hide #8 models

> show #9 models

> show #8 models

> show #10 models

> hide #10 models

> hide #9 models

> hide #8 models

> hide #7 models

> hide #6 models

> ui tool show ""AlphaFold Error Plot""

> alphafold pae #10 file
> /Users/gabriele/Desktop/out/_L_protein_Bantou289_m_scores_rank_005_alphafold2_ptm_model_5_seed_000.json

> color bfactor #10 palette alphafold

17806 atoms, 2217 residues, atom bfactor range 25 to 90.2  

> color bfactor #10 palette alphafold

17806 atoms, 2217 residues, atom bfactor range 25 to 90.2  

> ui tool show ""AlphaFold Error Plot""

> alphafold pae #5 file
> /Users/gabriele/Desktop/out/_L_protein_Bantou289_m_scores_rank_001_alphafold2_ptm_model_2_seed_000.json

> color bfactor #5 palette alphafold

17806 atoms, 2217 residues, atom bfactor range 37.3 to 97.1  

> show #7 models

> hide #5 models

> show #5 models

> hide #5 models

> show #6 models

> show #5 models

> hide #6 models

> hide #7 models

> ui tool show ""Show Sequence Viewer""

> sequence chain #3/L

Alignment identifier is 3/L  

> show #7 models

> show #8 models

> show #9 models

> show #10 models

> hide #8 models

> hide #9 models

> hide #10 models

> hide #7 models

> hide #5 models

> ui tool show ""Show Sequence Viewer""

> sequence chain #4/L

Alignment identifier is 4/L  

> select
> #4/L:431-434,445-449,452-459,475-479,491-510,521-526,576-580,587-601,610-619

620 atoms, 620 bonds, 78 residues, 1 model selected  

> select #4/L:468-470,528-530,533-539,546-550,558-564,571-575

251 atoms, 252 bonds, 30 residues, 1 model selected  

> select clear

> ui tool show ""Show Sequence Viewer""

> sequence chain #1/E

Alignment identifier is 1/E  

> ui tool show ""Show Sequence Viewer""

> sequence chain #1/L

Alignment identifier is 1/L  

> select
> #1/L:2-16,19-32,34-58,68-76,108-134,153-175,179-191,200-206,211-223,230-251,262-272,284-293,296-303,321-334,343-365,385-404,412-434,438-443,445-449,453-459,491-510,576-580,586-601,608-628,630-648,655-660,666-684,691-709,715-735,746-762,780-793,1090-1096,1137-1158,1166-1182,1193-1210,1219-1236,1242-1259,1267-1279,1297-1320,1338-1366,1396-1406,1412-1431,1433-1451,1465-1471,1473-1486,1490-1506,1524-1533,1539-1544,1579-1589,1595-1608,1612-1626,1638-1649,1674-1679,1684-1705,1778-1788,1796-1800,1812-1817

6902 atoms, 6962 bonds, 844 residues, 1 model selected  

> select clear

> select
> #1/L:2-16,19-32,34-58,68-76,108-134,153-175,179-191,200-206,211-223,230-251,262-272,284-293,296-303,321-334,343-365,385-404,412-434,438-443,445-449,453-459,491-510,576-580,586-601,608-628,630-648,655-660,666-684,691-709,715-735,746-762,780-793,1090-1096,1137-1158,1166-1182,1193-1210,1219-1236,1242-1259,1267-1279,1297-1320,1338-1366,1396-1406,1412-1431,1433-1451,1465-1471,1473-1486,1490-1506,1524-1533,1539-1544,1579-1589,1595-1608,1612-1626,1638-1649,1674-1679,1684-1705,1778-1788,1796-1800,1812-1817

6902 atoms, 6962 bonds, 844 residues, 1 model selected  

> select clear

> select
> #1/L:2-16,19-32,34-58,68-76,108-134,153-175,179-191,200-206,211-223,230-251,262-272,284-293,296-303,321-334,343-365,385-404,412-434,438-443,445-449,453-459,491-510,576-580,586-601,608-628,630-648,655-660,666-684,691-709,715-735,746-762,780-793,1090-1096,1137-1158,1166-1182,1193-1210,1219-1236,1242-1259,1267-1279,1297-1320,1338-1366,1396-1406,1412-1431,1433-1451,1465-1471,1473-1486,1490-1506,1524-1533,1539-1544,1579-1589,1595-1608,1612-1626,1638-1649,1674-1679,1684-1705,1778-1788,1796-1800,1812-1817

6902 atoms, 6962 bonds, 844 residues, 1 model selected  

> open
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7ckl_alphabundle_fit.pdb

Chain information for 7ckl_alphabundle_fit.pdb #11  
---  
Chain | Description  
A | No description available  
  

> open
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7och_260-380_fit.pdb

Chain information for 7och_260-380_fit.pdb #12  
---  
Chain | Description  
L | No description available  
  

> open
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7oe3_1520-1790_fit.pdb

Chain information for 7oe3_1520-1790_fit.pdb #14  
---  
Chain | Description  
L | No description available  
  

> open
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7oea_fit.pdb

Chain information for 7oea_fit.pdb #15  
---  
Chain | Description  
L | No description available  
  

> open
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7ojn_430-620_fit.pdb

Chain information for 7ojn_430-620_fit.pdb #16  
---  
Chain | Description  
L | No description available  
  
Computing secondary structure  

> hide #!12 models

> hide #!14 models

> hide #!15 models

> hide #16 models

> show #!15 models

> mmaker #11 to #15

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea_fit.pdb, chain L (#15) with 7ckl_alphabundle_fit.pdb, chain A
(#11), sequence alignment score = 1117.5  
RMSD between 273 pruned atom pairs is 0.994 angstroms; (across all 404 pairs:
21.871)  
  

> save
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7ckl_alphabundle_fit.pdb
> models #11

> hide #!11 models

> show #!12 models

> mmaker #12 to #15

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea_fit.pdb, chain L (#15) with 7och_260-380_fit.pdb, chain L
(#12), sequence alignment score = 481.6  
RMSD between 88 pruned atom pairs is 1.129 angstroms; (across all 104 pairs:
1.916)  
  

> save
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7ckl_alphabundle_fit.pdb
> models #11

> save
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7och_260-380_fit.pdb
> models #12

> hide #!12 models

> show #!13 models

> show #!11 models

> hide #!11 models

> show #!11 models

> hide #!11 models

> show #!11 models

> hide #!11 models

> mmaker #13 to #15

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea_fit.pdb, chain L (#15) with 7ckl_alphabundle.pdb, chain A
(#13), sequence alignment score = 4720.4  
RMSD between 276 pruned atom pairs is 1.001 angstroms; (across all 336 pairs:
1.707)  
  

> show #!11 models

> hide #!11 models

> show #!11 models

> hide #!13 models

> show #!13 models

> hide #!11 models

> save
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7ckl_alphabundle_fit.pdb
> models #13

> hide #!13 models

> show #!14 models

> mmaker #14 to #15

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea_fit.pdb, chain L (#15) with 7oe3_1520-1790_fit.pdb, chain L
(#14), sequence alignment score = 931.4  
RMSD between 189 pruned atom pairs is 1.188 angstroms; (across all 207 pairs:
1.935)  
  

> save
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7oe3_1520-1790_fit.pdb
> models #14

> hide #!14 models

> show #16 models

> mmaker #16 to #15

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea_fit.pdb, chain L (#15) with 7ojn_430-620_fit.pdb, chain L
(#16), sequence alignment score = 766.6  
RMSD between 170 pruned atom pairs is 0.741 angstroms; (across all 174 pairs:
0.888)  
  

> save
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7ojn_430-620_fit.pdb
> models #16

> hide #16 models

> show #16 models

> show #!14 models

> show #!13 models

> close #16#11-15

> close #4#1-3

> open
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7oea_fit.pdb

Chain information for 7oea_fit.pdb #1  
---  
Chain | Description  
L | No description available  
  

> open
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7ojn_430-620_fit.pdb

Chain information for 7ojn_430-620_fit.pdb #2  
---  
Chain | Description  
L | No description available  
  

> open
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7och_260-380_fit.pdb

Chain information for 7och_260-380_fit.pdb #3  
---  
Chain | Description  
L | No description available  
  

> open
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7ckl_alphabundle_fit.pdb

7ckl_alphabundle_fit.pdb title:  
Structure of lassa virus polymerase bound to Z matrix protein [more info...]  
  
Chain information for 7ckl_alphabundle_fit.pdb #4  
---  
Chain | Description  
A | RNA-directed RNA polymerase L  
  

> open
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7oe3_1520-1790_fit.pdb

Chain information for 7oe3_1520-1790_fit.pdb #11  
---  
Chain | Description  
L | No description available  
  
Computing secondary structure  

> hide #!1 models

> hide #!3 models

> show #2#!4,11 atoms

> hide #2#!4,11 atoms

> open
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7oea.pdb

7oea.pdb title:  
Lassa virus L protein bound to 3' promoter RNA (well-resolved polymerase core)
[3END-core] [more info...]  
  
Chain information for 7oea.pdb #12  
---  
Chain | Description  
E | 3' VRNA  
L | RNA-directed RNA polymerase L  
  
Non-standard residues in 7oea.pdb #12  
---  
MG — magnesium ion  
ZN — zinc ion  
  
10 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.  

> sequence chain #12/L

Alignment identifier is 12/L  

> open
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/250502/bantou289.B99990001.pdb

Chain information for bantou289.B99990001.pdb #13  
---  
Chain | Description  
A | No description available  
  

> open
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/250502/bantou289.B99990005.pdb

Chain information for bantou289.B99990005.pdb #14  
---  
Chain | Description  
A | No description available  
  

> open
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/250502/bantou289.B99990002.pdb

Chain information for bantou289.B99990002.pdb #15  
---  
Chain | Description  
A | No description available  
  

> open
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/250502/bantou289.B99990003.pdb

Chain information for bantou289.B99990003.pdb #16  
---  
Chain | Description  
A | No description available  
  

> open
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/250502/bantou289.B99990004.pdb

Chain information for bantou289.B99990004.pdb #17  
---  
Chain | Description  
A | No description available  
  
Computing secondary structure  

> hide #!11 models

> hide #13 models

> hide #!12 models

> hide #14 models

> hide #15 models

> hide #16 models

> hide #17 models

> hide #!4 models

> hide #2 models

> show #13 models

> select #13/A:931-1089

1287 atoms, 1314 bonds, 159 residues, 1 model selected  

> delete sel

> select #13/A:1818-2217

3173 atoms, 3247 bonds, 400 residues, 1 model selected  

> delete sel

> select #13/A:795-850

429 atoms, 433 bonds, 56 residues, 1 model selected  

> delete sel

> show #!1 models

> hide #!1 models

> show #!12 models

> mmaker #13-17 to #12

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker 7oea.pdb, chain L (#12) with bantou289.B99990001.pdb, chain A
(#13), sequence alignment score = 9949  
RMSD between 216 pruned atom pairs is 0.831 angstroms; (across all 1416 pairs:
11.646)  
  
Matchmaker 7oea.pdb, chain L (#12) with bantou289.B99990005.pdb, chain A
(#14), sequence alignment score = 10001.2  
RMSD between 275 pruned atom pairs is 1.222 angstroms; (across all 1432 pairs:
11.576)  
  
Matchmaker 7oea.pdb, chain L (#12) with bantou289.B99990002.pdb, chain A
(#15), sequence alignment score = 10031.2  
RMSD between 248 pruned atom pairs is 1.087 angstroms; (across all 1432 pairs:
13.393)  
  
Matchmaker 7oea.pdb, chain L (#12) with bantou289.B99990003.pdb, chain A
(#16), sequence alignment score = 9992.2  
RMSD between 246 pruned atom pairs is 1.008 angstroms; (across all 1432 pairs:
12.388)  
  
Matchmaker 7oea.pdb, chain L (#12) with bantou289.B99990004.pdb, chain A
(#17), sequence alignment score = 9952  
RMSD between 223 pruned atom pairs is 1.134 angstroms; (across all 1432 pairs:
11.572)  
  

> hide #!12 models

> open
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7oea_fit.pdb

Chain information for 7oea_fit.pdb #18  
---  
Chain | Description  
L | No description available  
  
Computing secondary structure  

> close #2,5-10,14-17#1,3-4,11-13,18

> open
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7oea.pdb

7oea.pdb title:  
Lassa virus L protein bound to 3' promoter RNA (well-resolved polymerase core)
[3END-core] [more info...]  
  
Chain information for 7oea.pdb #1  
---  
Chain | Description  
E | 3' VRNA  
L | RNA-directed RNA polymerase L  
  
Non-standard residues in 7oea.pdb #1  
---  
MG — magnesium ion  
ZN — zinc ion  
  
10 atoms have alternate locations. Control/examine alternate locations with
Altloc Explorer [start tool...] or the altlocs command.  

> open
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7oea_fit.pdb

Chain information for 7oea_fit.pdb #2  
---  
Chain | Description  
L | No description available  
  
Computing secondary structure  

> close #2

> close #1

> open
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/250502/bantou289.B99990001.pdb

Chain information for bantou289.B99990001.pdb #1  
---  
Chain | Description  
A | No description available  
  
Computing secondary structure  

> open
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/250502/bantou289.B99990002.pdb

Chain information for bantou289.B99990002.pdb #2  
---  
Chain | Description  
A | No description available  
  

> open
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/250502/bantou289.B99990003.pdb

Chain information for bantou289.B99990003.pdb #3  
---  
Chain | Description  
A | No description available  
  

> open
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/250502/bantou289.B99990004.pdb

Chain information for bantou289.B99990004.pdb #4  
---  
Chain | Description  
A | No description available  
  

> open
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/250502/bantou289.B99990005.pdb

Chain information for bantou289.B99990005.pdb #5  
---  
Chain | Description  
A | No description available  
  
Computing secondary structure  

> select #1/A:931-1089

1287 atoms, 1314 bonds, 159 residues, 1 model selected  

> delete sel

> select #2/A:931-1089

1287 atoms, 1314 bonds, 159 residues, 1 model selected  

> delete sel

> select #3/A:931-1089

1287 atoms, 1314 bonds, 159 residues, 1 model selected  

> delete sel

> select #4-5/A:931-1089

2574 atoms, 2628 bonds, 318 residues, 2 models selected  

> delete sel

> select #1-5/A:795-850

2145 atoms, 2165 bonds, 280 residues, 5 models selected  

> delete sel

> select #1-5/A:1818-2217

15865 atoms, 16235 bonds, 2000 residues, 5 models selected  

> delete sel

> open
> /Users/gabriele/Desktop/out_norelaxation/_L_protein_Bantou289_m_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb

Chain information for
_L_protein_Bantou289_m_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb
#6  
---  
Chain | Description  
A | No description available  
  

> open
> /Users/gabriele/Desktop/out_norelaxation/_L_protein_Bantou289_m_unrelaxed_rank_002_alphafold2_ptm_model_1_seed_000.pdb

Chain information for
_L_protein_Bantou289_m_unrelaxed_rank_002_alphafold2_ptm_model_1_seed_000.pdb
#7  
---  
Chain | Description  
A | No description available  
  

> open
> /Users/gabriele/Desktop/out_norelaxation/_L_protein_Bantou289_m_unrelaxed_rank_003_alphafold2_ptm_model_4_seed_000.pdb

Chain information for
_L_protein_Bantou289_m_unrelaxed_rank_003_alphafold2_ptm_model_4_seed_000.pdb
#8  
---  
Chain | Description  
A | No description available  
  

> open
> /Users/gabriele/Desktop/out_norelaxation/_L_protein_Bantou289_m_unrelaxed_rank_004_alphafold2_ptm_model_3_seed_000.pdb

Chain information for
_L_protein_Bantou289_m_unrelaxed_rank_004_alphafold2_ptm_model_3_seed_000.pdb
#9  
---  
Chain | Description  
A | No description available  
  

> open
> /Users/gabriele/Desktop/out_norelaxation/_L_protein_Bantou289_m_unrelaxed_rank_005_alphafold2_ptm_model_5_seed_000.pdb

Chain information for
_L_protein_Bantou289_m_unrelaxed_rank_005_alphafold2_ptm_model_5_seed_000.pdb
#10  
---  
Chain | Description  
A | No description available  
  
Computing secondary structure  

> open
> /Users/gabriele/Desktop/out/_L_protein_Bantou289_m_relaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb

Chain information for
_L_protein_Bantou289_m_relaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb
#11  
---  
Chain | Description  
A | No description available  
  

> open
> /Users/gabriele/Desktop/out/_L_protein_Bantou289_m_relaxed_rank_002_alphafold2_ptm_model_1_seed_000.pdb

Chain information for
_L_protein_Bantou289_m_relaxed_rank_002_alphafold2_ptm_model_1_seed_000.pdb
#12  
---  
Chain | Description  
A | No description available  
  

> open
> /Users/gabriele/Desktop/out/_L_protein_Bantou289_m_relaxed_rank_003_alphafold2_ptm_model_4_seed_000.pdb

Chain information for
_L_protein_Bantou289_m_relaxed_rank_003_alphafold2_ptm_model_4_seed_000.pdb
#13  
---  
Chain | Description  
A | No description available  
  

> open
> /Users/gabriele/Desktop/out/_L_protein_Bantou289_m_relaxed_rank_004_alphafold2_ptm_model_3_seed_000.pdb

Chain information for
_L_protein_Bantou289_m_relaxed_rank_004_alphafold2_ptm_model_3_seed_000.pdb
#14  
---  
Chain | Description  
A | No description available  
  

> open
> /Users/gabriele/Desktop/out/_L_protein_Bantou289_m_relaxed_rank_005_alphafold2_ptm_model_5_seed_000.pdb

Chain information for
_L_protein_Bantou289_m_relaxed_rank_005_alphafold2_ptm_model_5_seed_000.pdb
#15  
---  
Chain | Description  
A | No description available  
  
Computing secondary structure  

> open
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7ojk/250428/bantou289.B99990002.pdb

Chain information for bantou289.B99990002.pdb #16  
---  
Chain | Description  
A | No description available  
B | No description available  
C | No description available  
  
Computing secondary structure  

> hide #!1 models

> hide #!2 models

> hide #!3 models

> hide #!4 models

> hide #!5 models

> mmaker #6-15 to #16

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker bantou289.B99990002.pdb, chain A (#16) with
_L_protein_Bantou289_m_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb,
chain A (#6), sequence alignment score = 10852  
RMSD between 1217 pruned atom pairs is 0.844 angstroms; (across all 2217
pairs: 2.345)  
  
Matchmaker bantou289.B99990002.pdb, chain A (#16) with
_L_protein_Bantou289_m_unrelaxed_rank_002_alphafold2_ptm_model_1_seed_000.pdb,
chain A (#7), sequence alignment score = 10837  
RMSD between 1561 pruned atom pairs is 0.967 angstroms; (across all 2217
pairs: 1.968)  
  
Matchmaker bantou289.B99990002.pdb, chain A (#16) with
_L_protein_Bantou289_m_unrelaxed_rank_003_alphafold2_ptm_model_4_seed_000.pdb,
chain A (#8), sequence alignment score = 10638.7  
RMSD between 792 pruned atom pairs is 1.322 angstroms; (across all 2217 pairs:
20.124)  
  
Matchmaker bantou289.B99990002.pdb, chain A (#16) with
_L_protein_Bantou289_m_unrelaxed_rank_004_alphafold2_ptm_model_3_seed_000.pdb,
chain A (#9), sequence alignment score = 10607.2  
RMSD between 731 pruned atom pairs is 1.265 angstroms; (across all 2217 pairs:
15.934)  
  
Matchmaker bantou289.B99990002.pdb, chain A (#16) with
_L_protein_Bantou289_m_unrelaxed_rank_005_alphafold2_ptm_model_5_seed_000.pdb,
chain A (#10), sequence alignment score = 10703.8  
RMSD between 901 pruned atom pairs is 1.260 angstroms; (across all 2217 pairs:
23.028)  
  
Matchmaker bantou289.B99990002.pdb, chain A (#16) with
_L_protein_Bantou289_m_relaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb,
chain A (#11), sequence alignment score = 10811.8  
RMSD between 1217 pruned atom pairs is 0.857 angstroms; (across all 2217
pairs: 2.345)  
  
Matchmaker bantou289.B99990002.pdb, chain A (#16) with
_L_protein_Bantou289_m_relaxed_rank_002_alphafold2_ptm_model_1_seed_000.pdb,
chain A (#12), sequence alignment score = 10817.8  
RMSD between 1561 pruned atom pairs is 0.971 angstroms; (across all 2217
pairs: 1.970)  
  
Matchmaker bantou289.B99990002.pdb, chain A (#16) with
_L_protein_Bantou289_m_relaxed_rank_003_alphafold2_ptm_model_4_seed_000.pdb,
chain A (#13), sequence alignment score = 10663.3  
RMSD between 791 pruned atom pairs is 1.317 angstroms; (across all 2217 pairs:
20.134)  
  
Matchmaker bantou289.B99990002.pdb, chain A (#16) with
_L_protein_Bantou289_m_relaxed_rank_004_alphafold2_ptm_model_3_seed_000.pdb,
chain A (#14), sequence alignment score = 10619.2  
RMSD between 724 pruned atom pairs is 1.258 angstroms; (across all 2217 pairs:
15.933)  
  
Matchmaker bantou289.B99990002.pdb, chain A (#16) with
_L_protein_Bantou289_m_relaxed_rank_005_alphafold2_ptm_model_5_seed_000.pdb,
chain A (#15), sequence alignment score = 10715.2  
RMSD between 900 pruned atom pairs is 1.260 angstroms; (across all 2217 pairs:
23.027)  
  

> hide #15 models

> hide #14 models

> hide #13 models

> hide #12 models

> hide #11 models

> hide #10 models

> hide #9 models

> hide #8 models

> hide #7 models

> hide #6 models

> show #6 models

> show #11 models

> hide #16 models

> mmaker #6 to #11

Computing secondary structure  
Parameters  
---  
Chain pairing | bb  
Alignment algorithm | Needleman-Wunsch  
Similarity matrix | BLOSUM-62  
SS fraction | 0.3  
Gap open (HH/SS/other) | 18/18/6  
Gap extend | 1  
SS matrix |  |  | H | S | O  
---|---|---|---  
H | 6 | -9 | -6  
S |  | 6 | -6  
O |  |  | 4  
Iteration cutoff | 2  
  
Matchmaker
_L_protein_Bantou289_m_relaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb,
chain A (#11) with
_L_protein_Bantou289_m_unrelaxed_rank_001_alphafold2_ptm_model_2_seed_000.pdb,
chain A (#6), sequence alignment score = 11294.2  
RMSD between 2217 pruned atom pairs is 0.103 angstroms; (across all 2217
pairs: 0.103)  
  

> show #6,11 atoms

> hide #6,11 atoms

> show #6,11 atoms

> hide #11 models

> ui tool show Clashes

> clashes ignoreHiddenModels true

270 clashes  

> hide #6 models

> show #11 models

> clashes ignoreHiddenModels true

4 clashes  

> show #6 models

> hide #6 models

> hide #11 models

> show #6 models

> clashes ignoreHiddenModels true

270 clashes  

> show #11 models

> show #12 models

> hide #12 models

> open
> /Users/gabriele/Downloads/_L_protein_Bantou289_m_relaxed_rank_001_alphafold2_ptm_model_2_seed_000_1FH.pdb

Summary of feedback from opening
/Users/gabriele/Downloads/_L_protein_Bantou289_m_relaxed_rank_001_alphafold2_ptm_model_2_seed_000_1FH.pdb  
---  
warnings | Ignored bad PDB record found on line 1  
  
  
Duplicate atom serial number found: 0  
Duplicate atom serial number found: 0  
Duplicate atom serial number found: 0  
Duplicate atom serial number found: 0  
Duplicate atom serial number found: 0  
17807 messages similar to the above omitted  
  
Chain information for
_L_protein_Bantou289_m_relaxed_rank_001_alphafold2_ptm_model_2_seed_000_1FH.pdb
#18  
---  
Chain | Description  
A | No description available  
  
Computing secondary structure  

> hide #17 models

> hide #11 models

> hide #6 models

> close #6-18

> show #!1 models

> show #!2 models

> show #!3 models

> show #!4 models

> show #!5 models

> hide #!1 models

> hide #!2 models

> hide #!3 models

> hide #!4 models

> hide #!5 models

> open
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7ckl_alphabundle_fit.pdb

7ckl_alphabundle_fit.pdb title:  
Structure of lassa virus polymerase bound to Z matrix protein [more info...]  
  
Chain information for 7ckl_alphabundle_fit.pdb #6  
---  
Chain | Description  
A | RNA-directed RNA polymerase L  
  

> open
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7och_260-380_fit.pdb

Chain information for 7och_260-380_fit.pdb #7  
---  
Chain | Description  
L | No description available  
  

> open
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7oe3_1520-1790_fit.pdb

Chain information for 7oe3_1520-1790_fit.pdb #8  
---  
Chain | Description  
L | No description available  
  

> open
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7oea_fit.pdb

Chain information for 7oea_fit.pdb #9  
---  
Chain | Description  
L | No description available  
  

> open
> /Users/gabriele/Desktop/command_line_tools/modeller/l_protein/7oea/7ojn_430-620_fit.pdb

Chain information for 7ojn_430-620_fit.pdb #10  
---  
Chain | Description  
L | No description available  
  
Computing secondary structure  

> show #!1 models

> show #!2 models

> show #!3 models

> show #!4 models

> show #!5 models

> hide #!5 models

> hide #!4 models

> hide #!3 models

> hide #!2 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> hide #!6 models

> hide #!7 models

> hide #!8 models

> hide #!9 models

> hide #10 models

> open
> /Users/gabriele/Desktop/L_protein/L_protein_pdb/L_single_domain_consurf/7ckl_single_domain_consurf.pdb

Summary of feedback from opening
/Users/gabriele/Desktop/L_protein/L_protein_pdb/L_single_domain_consurf/7ckl_single_domain_consurf.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 9 AA9 ASN A 212 CYS A 221 1 10  
Start residue of secondary structure not found: HELIX 10 AB1 HIS A 232 GLY A
252 1 21  
Start residue of secondary structure not found: HELIX 11 AB2 GLU A 262 ASN A
272 1 11  
Start residue of secondary structure not found: HELIX 12 AB3 SER A 283 LYS A
292 1 10  
Start residue of secondary structure not found: HELIX 13 AB4 SER A 295 LEU A
301 1 7  
77 messages similar to the above omitted  
Cannot find LINK/SSBOND residue CYS (1692 )  
Cannot find LINK/SSBOND residue ASP (1192 )  
Cannot find LINK/SSBOND residue ASP (1192 )  
Cannot find LINK/SSBOND residue ASP (1334 )  
Cannot find LINK/SSBOND residue GLU (1384 )  
9 messages similar to the above omitted  
  
7ckl_single_domain_consurf.pdb title:  
Structure of lassa virus polymerase bound to Z matrix protein [more info...]  
  
Chain information for 7ckl_single_domain_consurf.pdb #11  
---  
Chain | Description  
A | RNA-directed RNA polymerase L  
B | ring finger protein Z  
C | No description available  
F | No description available  
G | No description available  
H | No description available  
I | No description available  
K | No description available  
N | No description available  
O | No description available  
P | No description available  
Q | No description available  
S | No description available  
T | No description available  
Y | No description available  
  
Non-standard residues in 7ckl_single_domain_consurf.pdb #11  
---  
MN — manganese (II) ion  
THR — (THR)  
ZN — zinc ion  
  

> hide #!11 models

> close #11

> open
> /Users/gabriele/Desktop/L_protein/L_protein_pdb/consurf_models/my_msa_consurf_7ckl.pdb

my_msa_consurf_7ckl.pdb title:  
Structure of lassa virus polymerase bound to Z matrix protein [more info...]  
  
Chain information for my_msa_consurf_7ckl.pdb #11  
---  
Chain | Description  
A | RNA-directed RNA polymerase L  
B | ring finger protein Z  
  
Non-standard residues in my_msa_consurf_7ckl.pdb #11  
---  
MN — manganese (II) ion  
ZN — zinc ion  
  

> hide #!11.2 models

> ui tool show ""Render/Select by Attribute""

> color byattribute a:bfactor #!11 target absc palette
> 0,#a02760:4.5,white:9,#0c7d82

11521 atoms, 1467 residues, atom bfactor range 0 to 9  

Cell requested for row 0 is out of bounds for table with 13 rows! Resizing
table model.  

> color byattribute a:bfactor #!11 target absc palette
> 0,#0c7d82:4.5,white:9,#a02760

11521 atoms, 1467 residues, atom bfactor range 0 to 9  

> set bgColor white

> set bgColor #ffffff00

> lighting soft

> select #11/L

Nothing selected  

> select #11/A

11138 atoms, 11335 bonds, 22 pseudobonds, 1416 residues, 3 models selected  

> show sel surfaces

> transparency (#!11 & sel) 60

> ui tool show PICKLUSTER

Please register the custom scheme 'pickluster' via
QWebEngineUrlScheme::registerScheme() before installing the custom scheme
handler.  

Cluster information for my_msa_consurf_7ckl.pdb['A', 'B']  
---  
Cluster | Residues  
1 | [['A', 'LYS', 263], ['A', 'ASP', 605], ['A', 'ASN', 607], ['A', 'GLU', 608], ['A', 'VAL', 650], ['A', 'SER', 651], ['A', 'VAL', 690], ['A', 'LYS', 691], ['A', 'SER', 692], ['A', 'MET', 693], ['A', 'MET', 694], ['A', 'THR', 695], ['A', 'PHE', 698], ['A', 'SER', 1183], ['A', 'MET', 1184], ['A', 'ALA', 1185], ['A', 'ARG', 1380], ['A', 'PHE', 1381], ['A', 'VAL', 1391], ['A', 'TRP', 1392], ['B', 'PRO', 28], ['B', 'PHE', 30], ['B', 'CYS', 31], ['B', 'LYS', 32], ['B', 'SER', 33], ['B', 'CYS', 34], ['B', 'TRP', 35], ['B', 'PHE', 36], ['B', 'ASN', 52], ['B', 'CYS', 53], ['B', 'LEU', 56], ['B', 'LEU', 57], ['B', 'GLY', 59], ['B', 'VAL', 60], ['B', 'PRO', 65]]  
2 | [['A', 'HIS', 1348], ['B', 'ASN', 38]]  
  
Calculation of interface was successful  
Interactions in clusters in my_msa_consurf_7ckl.pdb['A', 'B']  
---  
Cluster | Interactions  
1 | [[['A', 'LYS', 263], ['B', 'PHE', 36]], [['A', 'ASP', 605], ['B', 'VAL', 60]], [['A', 'ASN', 607], ['B', 'LEU', 56]], [['A', 'ASN', 607], ['B', 'VAL', 60]], [['A', 'ASN', 607], ['B', 'GLY', 59]], [['A', 'ASN', 607], ['B', 'LEU', 57]], [['A', 'GLU', 608], ['B', 'LEU', 56]], [['A', 'VAL', 650], ['B', 'PHE', 36]], [['A', 'VAL', 650], ['B', 'TRP', 35]], [['A', 'SER', 651], ['B', 'PHE', 36]], [['A', 'VAL', 690], ['B', 'LEU', 56]], [['A', 'LYS', 691], ['B', 'ASN', 52]], [['A', 'LYS', 691], ['B', 'CYS', 34]], [['A', 'LYS', 691], ['B', 'LEU', 56]], [['A', 'LYS', 691], ['B', 'CYS', 53]], [['A', 'SER', 692], ['B', 'SER', 33]], [['A', 'SER', 692], ['B', 'LEU', 56]], [['A', 'SER', 692], ['B', 'LEU', 57]], [['A', 'SER', 692], ['B', 'CYS', 34]], [['A', 'SER', 692], ['B', 'CYS', 53]], [['A', 'MET', 693], ['B', 'SER', 33]], [['A', 'MET', 693], ['B', 'PRO', 65]], [['A', 'MET', 693], ['B', 'LEU', 57]], [['A', 'MET', 693], ['B', 'CYS', 34]], [['A', 'MET', 694], ['B', 'TRP', 35]], [['A', 'MET', 694], ['B', 'SER', 33]], [['A', 'MET', 694], ['B', 'CYS', 34]], [['A', 'THR', 695], ['B', 'TRP', 35]], [['A', 'THR', 695], ['B', 'LYS', 32]], [['A', 'THR', 695], ['B', 'SER', 33]], [['A', 'PHE', 698], ['B', 'TRP', 35]], [['A', 'SER', 1183], ['B', 'PRO', 28]], [['A', 'MET', 1184], ['B', 'PRO', 28]], [['A', 'ALA', 1185], ['B', 'PHE', 30]], [['A', 'ALA', 1185], ['B', 'PRO', 28]], [['A', 'ARG', 1380], ['B', 'PHE', 30]], [['A', 'PHE', 1381], ['B', 'PHE', 30]], [['A', 'PHE', 1381], ['B', 'TRP', 35]], [['A', 'VAL', 1391], ['B', 'TRP', 35]], [['A', 'TRP', 1392], ['B', 'LYS', 32]], [['A', 'TRP', 1392], ['B', 'TRP', 35]], [['A', 'TRP', 1392], ['B', 'CYS', 31]]]  
2 | [[['A', 'HIS', 1348], ['B', 'ASN', 38]]]  
  
Mean pLDDT of clusters in my_msa_consurf_7ckl.pdb['A', 'B']  
---  
Cluster | Mean pLDDT  
1 | 8.23  
2 | 9.0  
  

> hide #!11 surfaces

> select #11 /A :263 #11 /A :605 #11 /A :607 #11 /A :608 #11 /A :650 #11 /A
> :651 #11 /A :690 #11 /A :691 #11 /A :692 #11 /A :693 #11 /A :694 #11 /A :695
> #11 /A :698 #11 /A :1183 #11 /A :1184 #11 /A :1185 #11 /A :1380 #11 /A :1381
> #11 /A :1391 #11 /A :1392 #11 /B :28 #11 /B :30 #11 /B :31 #11 /B :32 #11 /B
> :33 #11 /B :34 #11 /B :35 #11 /B :36 #11 /B :52 #11 /B :53 #11 /B :56 #11 /B
> :57 #11 /B :59 #11 /B :60 #11 /B :65

283 atoms, 278 bonds, 292 pseudobonds, 35 residues, 2 models selected  

> select #11/B:25-73

381 atoms, 391 bonds, 49 residues, 1 model selected  

> hide sel cartoons

> show sel surfaces

> hide sel surfaces

> show sel cartoons

> ~select

Nothing selected  
Drag select of 100 residues  

> select add #11/A:1356

817 atoms, 4 bonds, 101 residues, 2 models selected  
Drag select of 4 atoms, 153 residues, 4 bonds, 12 pseudobonds  

> select subtract #11/B:35

1299 atoms, 8 bonds, 12 pseudobonds, 155 residues, 4 models selected  
Drag select of 64 residues  

> select subtract #11/A:598

1237 atoms, 8 bonds, 12 pseudobonds, 150 residues, 3 models selected  
Drag select of 51 residues  

> select clear

Drag select of 29 atoms, 278 residues, 58 pseudobonds, 23 bonds  

> select subtract #11/B:29

2254 atoms, 23 bonds, 58 pseudobonds, 279 residues, 5 models selected  

> select subtract #11/B:28

2247 atoms, 23 bonds, 57 pseudobonds, 278 residues, 5 models selected  
Drag select of 8 atoms, 16 residues, 3 pseudobonds, 5 bonds  
Drag select of 4 atoms, 21 residues, 1 pseudobonds, 2 bonds  

> select subtract #11/B:69

2253 atoms, 24 bonds, 57 pseudobonds, 280 residues, 5 models selected  

> select subtract #11/B:64

2250 atoms, 22 bonds, 56 pseudobonds, 279 residues, 5 models selected  

> select subtract #11/B:71

2242 atoms, 22 bonds, 56 pseudobonds, 278 residues, 5 models selected  

> select subtract #11/B:44

2238 atoms, 21 bonds, 56 pseudobonds, 277 residues, 5 models selected  

> select subtract #11/B:47

2235 atoms, 15 bonds, 56 pseudobonds, 276 residues, 5 models selected  

> select subtract #11/B:25

2225 atoms, 15 bonds, 56 pseudobonds, 275 residues, 5 models selected  

> select subtract #11/B:102@ZN

2224 atoms, 15 bonds, 56 pseudobonds, 274 residues, 5 models selected  

> select subtract #11/B:54

2216 atoms, 15 bonds, 56 pseudobonds, 273 residues, 5 models selected  

> select subtract #11/B:43

2207 atoms, 15 bonds, 56 pseudobonds, 272 residues, 5 models selected  

> select add #11/B:54

2215 atoms, 22 bonds, 56 pseudobonds, 273 residues, 5 models selected  

> select subtract #11/B:54

2207 atoms, 15 bonds, 56 pseudobonds, 272 residues, 5 models selected  

> select subtract #11/B:55

2200 atoms, 15 bonds, 56 pseudobonds, 271 residues, 5 models selected  

> select add #11/B:28

2207 atoms, 22 bonds, 56 pseudobonds, 272 residues, 5 models selected  

> select subtract #11/B:27

2203 atoms, 22 bonds, 56 pseudobonds, 271 residues, 5 models selected  

> select subtract #11/B:37

2194 atoms, 22 bonds, 56 pseudobonds, 270 residues, 5 models selected  

> select subtract #11/B:36

2183 atoms, 22 bonds, 56 pseudobonds, 269 residues, 5 models selected  

> select subtract #11/B:35

2169 atoms, 22 bonds, 56 pseudobonds, 268 residues, 5 models selected  

> select subtract #11/B:34

2166 atoms, 20 bonds, 39 pseudobonds, 267 residues, 5 models selected  

> select add #11/B:34

2172 atoms, 25 bonds, 39 pseudobonds, 268 residues, 5 models selected  

> select subtract #11/B:34

2166 atoms, 20 bonds, 39 pseudobonds, 267 residues, 5 models selected  

> select add #11/B:34

2172 atoms, 25 bonds, 39 pseudobonds, 268 residues, 5 models selected  

> select subtract #11/B:34

2166 atoms, 20 bonds, 39 pseudobonds, 267 residues, 5 models selected  

> select subtract #11/B:28

2159 atoms, 13 bonds, 39 pseudobonds, 266 residues, 5 models selected  

> select subtract #11/B:30

2148 atoms, 13 bonds, 39 pseudobonds, 265 residues, 5 models selected  

> select subtract #11/B:31

2143 atoms, 12 bonds, 39 pseudobonds, 264 residues, 5 models selected  

> select subtract #11/B:32

2134 atoms, 12 bonds, 39 pseudobonds, 263 residues, 5 models selected  

> select subtract #11/B:56

2126 atoms, 12 bonds, 39 pseudobonds, 262 residues, 5 models selected  

> select subtract #11/B:33

2123 atoms, 10 bonds, 8 pseudobonds, 261 residues, 5 models selected  

> select subtract #11/A:692

2117 atoms, 10 bonds, 7 pseudobonds, 260 residues, 4 models selected  

> select add #11/A:692

2123 atoms, 15 bonds, 7 pseudobonds, 261 residues, 4 models selected  

> select subtract #11/A:691

2114 atoms, 15 bonds, 5 pseudobonds, 260 residues, 3 models selected  

> select add #11/A:691

2123 atoms, 23 bonds, 5 pseudobonds, 261 residues, 3 models selected  

> show sel surfaces

> hide sel surfaces

> coulombic sel

The following residues are missing heavy (non-hydrogen) atoms, which may
result in inaccurate electrostatics:  
my_msa_consurf_7ckl.pdb #11/A ARG 24  
my_msa_consurf_7ckl.pdb #11/A LYS 121  
my_msa_consurf_7ckl.pdb #11/A GLU 128  
my_msa_consurf_7ckl.pdb #11/A ARG 161  
my_msa_consurf_7ckl.pdb #11/A PHE 165  
my_msa_consurf_7ckl.pdb #11/A GLU 179  
my_msa_consurf_7ckl.pdb #11/A GLU 180  
my_msa_consurf_7ckl.pdb #11/A ASN 846  
my_msa_consurf_7ckl.pdb #11/A LYS 847  
my_msa_consurf_7ckl.pdb #11/A LEU 848  
my_msa_consurf_7ckl.pdb #11/A THR 849  
my_msa_consurf_7ckl.pdb #11/A LEU 851  
my_msa_consurf_7ckl.pdb #11/A VAL 853  
my_msa_consurf_7ckl.pdb #11/A SER 854  
my_msa_consurf_7ckl.pdb #11/A GLN 855  
my_msa_consurf_7ckl.pdb #11/A LEU 856  
my_msa_consurf_7ckl.pdb #11/A THR 857  
my_msa_consurf_7ckl.pdb #11/A GLU 858  
my_msa_consurf_7ckl.pdb #11/A VAL 859  
my_msa_consurf_7ckl.pdb #11/A PHE 860  
my_msa_consurf_7ckl.pdb #11/A SER 861  
my_msa_consurf_7ckl.pdb #11/A ARG 862  
my_msa_consurf_7ckl.pdb #11/A ASP 872  
my_msa_consurf_7ckl.pdb #11/A TYR 873  
my_msa_consurf_7ckl.pdb #11/A GLU 874  
my_msa_consurf_7ckl.pdb #11/A TYR 875  
my_msa_consurf_7ckl.pdb #11/A LYS 876  
my_msa_consurf_7ckl.pdb #11/A VAL 877  
my_msa_consurf_7ckl.pdb #11/A GLN 878  
my_msa_consurf_7ckl.pdb #11/A GLN 879  
my_msa_consurf_7ckl.pdb #11/A MET 881  
my_msa_consurf_7ckl.pdb #11/A SER 882  
my_msa_consurf_7ckl.pdb #11/A ASN 883  
my_msa_consurf_7ckl.pdb #11/A LEU 884  
my_msa_consurf_7ckl.pdb #11/A VAL 885  
my_msa_consurf_7ckl.pdb #11/A LEU 886  
my_msa_consurf_7ckl.pdb #11/A SER 888  
my_msa_consurf_7ckl.pdb #11/A LYS 889  
my_msa_consurf_7ckl.pdb #11/A GLN 890  
my_msa_consurf_7ckl.pdb #11/A HIS 891  
my_msa_consurf_7ckl.pdb #11/A ASP 901  
my_msa_consurf_7ckl.pdb #11/A GLU 902  
my_msa_consurf_7ckl.pdb #11/A ILE 903  
my_msa_consurf_7ckl.pdb #11/A LEU 904  
my_msa_consurf_7ckl.pdb #11/A LEU 905  
my_msa_consurf_7ckl.pdb #11/A ASP 906  
my_msa_consurf_7ckl.pdb #11/A SER 910  
my_msa_consurf_7ckl.pdb #11/A THR 911  
my_msa_consurf_7ckl.pdb #11/A GLN 915  
my_msa_consurf_7ckl.pdb #11/A LEU 916  
my_msa_consurf_7ckl.pdb #11/A LYS 917  
my_msa_consurf_7ckl.pdb #11/A GLU 918  
my_msa_consurf_7ckl.pdb #11/A THR 919  
my_msa_consurf_7ckl.pdb #11/A VAL 920  
my_msa_consurf_7ckl.pdb #11/A GLU 921  
my_msa_consurf_7ckl.pdb #11/A LYS 922  
my_msa_consurf_7ckl.pdb #11/A ILE 923  
my_msa_consurf_7ckl.pdb #11/A VAL 924  
my_msa_consurf_7ckl.pdb #11/A ASP 925  
my_msa_consurf_7ckl.pdb #11/A GLN 926  
my_msa_consurf_7ckl.pdb #11/A TYR 927  
my_msa_consurf_7ckl.pdb #11/A ARG 928  
my_msa_consurf_7ckl.pdb #11/A GLU 929  
my_msa_consurf_7ckl.pdb #11/A PRO 930  
my_msa_consurf_7ckl.pdb #11/A VAL 931  
my_msa_consurf_7ckl.pdb #11/A LYS 1096  
my_msa_consurf_7ckl.pdb #11/A PHE 1100  
my_msa_consurf_7ckl.pdb #11/A VAL 1284  
my_msa_consurf_7ckl.pdb #11/A LYS 1710  
my_msa_consurf_7ckl.pdb #11/A ARG 1750  

Using Amber 20 recommended default charges and atom types for standard
residues  
Coulombic values for my_msa_consurf_7ckl.pdb_A SES surface #11.3: minimum,
-27.08, mean -1.50, maximum 19.17  
To also show corresponding color key, enter the above coulombic command and
add key true  

> coulombic sel

Coulombic values for my_msa_consurf_7ckl.pdb_A SES surface #11.3: minimum,
-27.08, mean -1.50, maximum 19.17  
To also show corresponding color key, enter the above coulombic command and
add key true  

> show sel surfaces

> hide sel surfaces

> show sel surfaces

> surface style #11.3 solid

> close #11

> open
> /Users/gabriele/Desktop/L_protein/L_protein_pdb/consurf_models/my_msa_consurf_7ckl.pdb

my_msa_consurf_7ckl.pdb title:  
Structure of lassa virus polymerase bound to Z matrix protein [more info...]  
  
Chain information for my_msa_consurf_7ckl.pdb #11  
---  
Chain | Description  
A | RNA-directed RNA polymerase L  
B | ring finger protein Z  
  
Non-standard residues in my_msa_consurf_7ckl.pdb #11  
---  
MN — manganese (II) ion  
ZN — zinc ion  
  

> close #12

> hide #!11.2 models

> show #!11.2 models

> hide #11.1 models

> show #11.1 models

> hide #!11.2 models

> ui tool show PICKLUSTER

Please register the custom scheme 'pickluster' via
QWebEngineUrlScheme::registerScheme() before installing the custom scheme
handler.  

Cluster information for my_msa_consurf_7ckl.pdb['A', 'B']  
---  
Cluster | Residues  
1 | [['A', 'LYS', 263], ['A', 'ASP', 605], ['A', 'ASN', 607], ['A', 'GLU', 608], ['A', 'VAL', 650], ['A', 'SER', 651], ['A', 'VAL', 690], ['A', 'LYS', 691], ['A', 'SER', 692], ['A', 'MET', 693], ['A', 'MET', 694], ['A', 'THR', 695], ['A', 'PHE', 698], ['A', 'SER', 1183], ['A', 'MET', 1184], ['A', 'ALA', 1185], ['A', 'ARG', 1380], ['A', 'PHE', 1381], ['A', 'VAL', 1391], ['A', 'TRP', 1392], ['B', 'PRO', 28], ['B', 'PHE', 30], ['B', 'CYS', 31], ['B', 'LYS', 32], ['B', 'SER', 33], ['B', 'CYS', 34], ['B', 'TRP', 35], ['B', 'PHE', 36], ['B', 'ASN', 52], ['B', 'CYS', 53], ['B', 'LEU', 56], ['B', 'LEU', 57], ['B', 'GLY', 59], ['B', 'VAL', 60], ['B', 'PRO', 65]]  
2 | [['A', 'HIS', 1348], ['B', 'ASN', 38]]  
  
Calculation of interface was successful  
Interactions in clusters in my_msa_consurf_7ckl.pdb['A', 'B']  
---  
Cluster | Interactions  
1 | [[['A', 'LYS', 263], ['B', 'PHE', 36]], [['A', 'ASP', 605], ['B', 'VAL', 60]], [['A', 'ASN', 607], ['B', 'LEU', 56]], [['A', 'ASN', 607], ['B', 'VAL', 60]], [['A', 'ASN', 607], ['B', 'GLY', 59]], [['A', 'ASN', 607], ['B', 'LEU', 57]], [['A', 'GLU', 608], ['B', 'LEU', 56]], [['A', 'VAL', 650], ['B', 'PHE', 36]], [['A', 'VAL', 650], ['B', 'TRP', 35]], [['A', 'SER', 651], ['B', 'PHE', 36]], [['A', 'VAL', 690], ['B', 'LEU', 56]], [['A', 'LYS', 691], ['B', 'ASN', 52]], [['A', 'LYS', 691], ['B', 'CYS', 34]], [['A', 'LYS', 691], ['B', 'LEU', 56]], [['A', 'LYS', 691], ['B', 'CYS', 53]], [['A', 'SER', 692], ['B', 'SER', 33]], [['A', 'SER', 692], ['B', 'LEU', 56]], [['A', 'SER', 692], ['B', 'LEU', 57]], [['A', 'SER', 692], ['B', 'CYS', 34]], [['A', 'SER', 692], ['B', 'CYS', 53]], [['A', 'MET', 693], ['B', 'SER', 33]], [['A', 'MET', 693], ['B', 'PRO', 65]], [['A', 'MET', 693], ['B', 'LEU', 57]], [['A', 'MET', 693], ['B', 'CYS', 34]], [['A', 'MET', 694], ['B', 'TRP', 35]], [['A', 'MET', 694], ['B', 'SER', 33]], [['A', 'MET', 694], ['B', 'CYS', 34]], [['A', 'THR', 695], ['B', 'TRP', 35]], [['A', 'THR', 695], ['B', 'LYS', 32]], [['A', 'THR', 695], ['B', 'SER', 33]], [['A', 'PHE', 698], ['B', 'TRP', 35]], [['A', 'SER', 1183], ['B', 'PRO', 28]], [['A', 'MET', 1184], ['B', 'PRO', 28]], [['A', 'ALA', 1185], ['B', 'PHE', 30]], [['A', 'ALA', 1185], ['B', 'PRO', 28]], [['A', 'ARG', 1380], ['B', 'PHE', 30]], [['A', 'PHE', 1381], ['B', 'PHE', 30]], [['A', 'PHE', 1381], ['B', 'TRP', 35]], [['A', 'VAL', 1391], ['B', 'TRP', 35]], [['A', 'TRP', 1392], ['B', 'LYS', 32]], [['A', 'TRP', 1392], ['B', 'TRP', 35]], [['A', 'TRP', 1392], ['B', 'CYS', 31]]]  
2 | [[['A', 'HIS', 1348], ['B', 'ASN', 38]]]  
  
Mean pLDDT of clusters in my_msa_consurf_7ckl.pdb['A', 'B']  
---  
Cluster | Mean pLDDT  
1 | 8.23  
2 | 9.0  
  
Drag select of 1 residues  

> select #11/A:1710

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select #11/A:1710

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select #11/A:1710

5 atoms, 4 bonds, 1 residue, 1 model selected  

> select subtract #11/A:1710

Nothing selected  
Drag select of 34 atoms, 279 residues, 59 pseudobonds, 25 bonds  

> select subtract #11/A:1430

2255 atoms, 25 bonds, 59 pseudobonds, 280 residues, 3 models selected  

> select subtract #11/A:1431

2250 atoms, 25 bonds, 59 pseudobonds, 279 residues, 3 models selected  

> select subtract #11/A:1432

2242 atoms, 25 bonds, 59 pseudobonds, 278 residues, 3 models selected  

> select subtract #11/A:1433

2238 atoms, 25 bonds, 59 pseudobonds, 277 residues, 3 models selected  

> select subtract #11/A:1469

2227 atoms, 25 bonds, 59 pseudobonds, 276 residues, 3 models selected  

> select subtract #11/A:1467

2219 atoms, 25 bonds, 59 pseudobonds, 275 residues, 3 models selected  

> select subtract #11/A:1466

2212 atoms, 25 bonds, 59 pseudobonds, 274 residues, 3 models selected  

> select subtract #11/A:1468

2205 atoms, 25 bonds, 59 pseudobonds, 273 residues, 3 models selected  

> select subtract #11/A:1440

2197 atoms, 25 bonds, 59 pseudobonds, 272 residues, 3 models selected  

> select subtract #11/A:1439

2191 atoms, 25 bonds, 59 pseudobonds, 271 residues, 3 models selected  

> select subtract #11/A:1441

2183 atoms, 25 bonds, 59 pseudobonds, 270 residues, 3 models selected  

> select subtract #11/A:1438

2175 atoms, 25 bonds, 59 pseudobonds, 269 residues, 3 models selected  

> select subtract #11/A:1437

2165 atoms, 25 bonds, 59 pseudobonds, 268 residues, 3 models selected  

> select subtract #11/A:1436

2158 atoms, 25 bonds, 59 pseudobonds, 267 residues, 3 models selected  

> select subtract #11/A:1435

2151 atoms, 25 bonds, 59 pseudobonds, 266 residues, 3 models selected  

> select subtract #11/A:1401

2142 atoms, 25 bonds, 59 pseudobonds, 265 residues, 3 models selected  

> select add #11/A:1401

2151 atoms, 33 bonds, 59 pseudobonds, 266 residues, 3 models selected  

> select subtract #11/A:1401

2142 atoms, 25 bonds, 59 pseudobonds, 265 residues, 3 models selected  

> select subtract #11/A:1400

2135 atoms, 25 bonds, 59 pseudobonds, 264 residues, 3 models selected  

> select subtract #11/A:1399

2127 atoms, 25 bonds, 59 pseudobonds, 263 residues, 3 models selected  

> select subtract #11/A:1398

2119 atoms, 25 bonds, 59 pseudobonds, 262 residues, 3 models selected  

> select subtract #11/A:1434

2112 atoms, 25 bonds, 59 pseudobonds, 261 residues, 3 models selected  
Drag select of 16 atoms, 39 residues, 5 pseudobonds, 12 bonds  

> select subtract #11/B:42

2042 atoms, 17 bonds, 54 pseudobonds, 253 residues, 3 models selected  

> select subtract #11/B:71

2034 atoms, 17 bonds, 54 pseudobonds, 252 residues, 3 models selected  

> select subtract #11/B:72

2027 atoms, 17 bonds, 54 pseudobonds, 251 residues, 3 models selected  

> select subtract #11/B:73

2020 atoms, 17 bonds, 54 pseudobonds, 250 residues, 3 models selected  

> select subtract #11/B:43

2011 atoms, 17 bonds, 54 pseudobonds, 249 residues, 3 models selected  

> select subtract #11/B:41

2003 atoms, 17 bonds, 54 pseudobonds, 248 residues, 3 models selected  

> select subtract #11/B:40

1999 atoms, 17 bonds, 54 pseudobonds, 247 residues, 3 models selected  

> select subtract #11/B:62

1993 atoms, 17 bonds, 54 pseudobonds, 246 residues, 3 models selected  

> select subtract #11/B:47

1990 atoms, 15 bonds, 54 pseudobonds, 245 residues, 3 models selected  

> select subtract #11/B:58

1982 atoms, 15 bonds, 54 pseudobonds, 244 residues, 3 models selected  

> select subtract #11/B:59

1978 atoms, 15 bonds, 54 pseudobonds, 243 residues, 3 models selected  

> select subtract #11/B:67

1975 atoms, 13 bonds, 54 pseudobonds, 242 residues, 3 models selected  

> select subtract #11/B:66

1967 atoms, 13 bonds, 54 pseudobonds, 241 residues, 3 models selected  

> select subtract #11/B:65

1960 atoms, 13 bonds, 54 pseudobonds, 240 residues, 3 models selected  

> select subtract #11/B:68

1951 atoms, 13 bonds, 54 pseudobonds, 239 residues, 3 models selected  

> select subtract #11/B:54

1943 atoms, 13 bonds, 54 pseudobonds, 238 residues, 3 models selected  

> select add #11/B:49

1951 atoms, 20 bonds, 54 pseudobonds, 239 residues, 3 models selected  

> select subtract #11/B:49

1943 atoms, 13 bonds, 54 pseudobonds, 238 residues, 3 models selected  

> select add #11/B:54

1951 atoms, 20 bonds, 54 pseudobonds, 239 residues, 3 models selected  

> select subtract #11/B:55

1944 atoms, 20 bonds, 54 pseudobonds, 238 residues, 3 models selected  

> select subtract #11/B:54

1936 atoms, 13 bonds, 54 pseudobonds, 237 residues, 3 models selected  

> select subtract #11/B:53

1934 atoms, 12 bonds, 50 pseudobonds, 236 residues, 3 models selected  

> select subtract #11/B:56

1926 atoms, 12 bonds, 50 pseudobonds, 235 residues, 3 models selected  

> select subtract #11/B:52

1918 atoms, 12 bonds, 50 pseudobonds, 234 residues, 3 models selected  

> select subtract #11/B:50

1916 atoms, 10 bonds, 50 pseudobonds, 233 residues, 3 models selected  

> select subtract #11/B:51

1908 atoms, 10 bonds, 50 pseudobonds, 232 residues, 3 models selected  

> select subtract #11/B:36

1897 atoms, 10 bonds, 50 pseudobonds, 231 residues, 3 models selected  

> select subtract #11/B:35

1883 atoms, 10 bonds, 50 pseudobonds, 230 residues, 3 models selected  

> select subtract #11/B:33

1880 atoms, 8 bonds, 19 pseudobonds, 229 residues, 3 models selected  

> select subtract #11/A:1183

1874 atoms, 8 bonds, 18 pseudobonds, 228 residues, 3 models selected  

> select add #11/A:1183

1880 atoms, 13 bonds, 18 pseudobonds, 229 residues, 3 models selected  

> select subtract #11/B:34

1877 atoms, 11 bonds, 1 pseudobond, 228 residues, 2 models selected  

> select subtract #11/B:32

1868 atoms, 11 bonds, 1 pseudobond, 227 residues, 2 models selected  

> select subtract #11/B:31

1865 atoms, 9 bonds, 226 residues, 1 model selected  

> select subtract #11/B:101@ZN

1864 atoms, 9 bonds, 225 residues, 1 model selected  

> select clear

> select #11/A:1392

14 atoms, 15 bonds, 1 residue, 1 model selected  

> select #11/A:1391

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select add #11/A:1392

21 atoms, 21 bonds, 2 residues, 1 model selected  

> select add #11/A:1381

32 atoms, 32 bonds, 3 residues, 1 model selected  

> select add #11/A:1380

43 atoms, 42 bonds, 4 residues, 1 model selected  

> select add #11/A:1183

49 atoms, 47 bonds, 5 residues, 1 model selected  

> select add #11/A:1184

57 atoms, 54 bonds, 6 residues, 1 model selected  

> select add #11/A:1185

62 atoms, 58 bonds, 7 residues, 1 model selected  

> select add #11/A:650

69 atoms, 64 bonds, 8 residues, 1 model selected  

> select add #11/A:651

75 atoms, 69 bonds, 9 residues, 1 model selected  

> select add #11/A:698

86 atoms, 80 bonds, 10 residues, 1 model selected  

> select add #11/A:695

93 atoms, 86 bonds, 11 residues, 1 model selected  

> select add #11/A:694

101 atoms, 93 bonds, 12 residues, 1 model selected  

> select add #11/A:693

109 atoms, 100 bonds, 13 residues, 1 model selected  

> select add #11/A:692

115 atoms, 105 bonds, 14 residues, 1 model selected  

> select add #11/A:691

124 atoms, 113 bonds, 15 residues, 1 model selected  

> select add #11/A:607

132 atoms, 120 bonds, 16 residues, 1 model selected  

> select add #11/A:608

141 atoms, 128 bonds, 17 residues, 1 model selected  

> select add #11/A:605

149 atoms, 135 bonds, 18 residues, 1 model selected  

> select add #11/A:263

158 atoms, 143 bonds, 19 residues, 1 model selected  

> select add #11/B:38

166 atoms, 150 bonds, 20 residues, 1 model selected  

> select add #11/A:1348

176 atoms, 160 bonds, 21 residues, 1 model selected  

> select add #11/B:28

183 atoms, 167 bonds, 22 residues, 1 model selected  

> select add #11/B:52

191 atoms, 174 bonds, 23 residues, 1 model selected  

> select add #11/B:53

197 atoms, 179 bonds, 24 residues, 1 model selected  

> select add #11/B:56

205 atoms, 186 bonds, 25 residues, 1 model selected  

> select add #11/B:57

213 atoms, 193 bonds, 26 residues, 1 model selected  

> select add #11/B:59

217 atoms, 196 bonds, 27 residues, 1 model selected  

> select add #11/B:60

224 atoms, 202 bonds, 28 residues, 1 model selected  

> select add #11/B:65

231 atoms, 209 bonds, 29 residues, 1 model selected  

> select add #11/B:33

237 atoms, 214 bonds, 30 residues, 1 model selected  

> select add #11/B:32

246 atoms, 222 bonds, 31 residues, 1 model selected  

> select add #11/B:31

252 atoms, 227 bonds, 32 residues, 1 model selected  

> select add #11/B:30

263 atoms, 238 bonds, 33 residues, 1 model selected  

> select add #11/B:34

269 atoms, 243 bonds, 34 residues, 1 model selected  

> select add #11/B:35

283 atoms, 258 bonds, 35 residues, 1 model selected  

> select add #11/B:36

294 atoms, 269 bonds, 36 residues, 1 model selected  

> ui tool show ""Render/Select by Attribute""

> color byattribute a:bfactor #!11 target absc palette
> 0,#0c7d82:4.5,white:9,#a02760

11521 atoms, 1467 residues, atom bfactor range 0 to 9  

> undo

> color byattribute a:bfactor #!11 & sel target absc palette
> 0,#0c7d82:4.5,white:9,#a02760

294 atoms, 36 residues, atom bfactor range 4 to 9  

> select add #11/A:690

301 atoms, 275 bonds, 37 residues, 1 model selected  

> color byattribute a:bfactor #!11 & sel target absc palette
> 0,#0c7d82:4.5,white:9,#a02760

301 atoms, 37 residues, atom bfactor range 4 to 9  

> select clear

Drag select of 28 atoms, 242 residues, 58 pseudobonds, 20 bonds  
Drag select of 21 residues  

> select subtract #11/A:240

1920 atoms, 20 bonds, 58 pseudobonds, 237 residues, 3 models selected  

> select subtract #11/A:770

1914 atoms, 20 bonds, 58 pseudobonds, 236 residues, 3 models selected  

> select subtract #11/A:769

1907 atoms, 20 bonds, 58 pseudobonds, 235 residues, 3 models selected  

> select subtract #11/A:243

1898 atoms, 20 bonds, 58 pseudobonds, 234 residues, 3 models selected  

> select subtract #11/A:774

1891 atoms, 20 bonds, 58 pseudobonds, 233 residues, 3 models selected  

> select subtract #11/A:241

1882 atoms, 20 bonds, 58 pseudobonds, 232 residues, 3 models selected  

> select subtract #11/A:768

1876 atoms, 20 bonds, 58 pseudobonds, 231 residues, 3 models selected  

> select subtract #11/A:775

1870 atoms, 20 bonds, 58 pseudobonds, 230 residues, 3 models selected  

> select subtract #11/A:244

1863 atoms, 20 bonds, 58 pseudobonds, 229 residues, 3 models selected  
Drag select of 6 residues  

> select subtract #11/B:66

1822 atoms, 20 bonds, 58 pseudobonds, 223 residues, 3 models selected  

> select subtract #11/B:67

1819 atoms, 18 bonds, 57 pseudobonds, 222 residues, 3 models selected  

> select subtract #11/B:68

1810 atoms, 18 bonds, 57 pseudobonds, 221 residues, 3 models selected  

> select subtract #11/B:69

1802 atoms, 18 bonds, 57 pseudobonds, 220 residues, 3 models selected  

> select subtract #11/B:47

1795 atoms, 11 bonds, 56 pseudobonds, 219 residues, 3 models selected  

> select subtract #11/B:70

1788 atoms, 11 bonds, 56 pseudobonds, 218 residues, 3 models selected  

> select subtract #11/B:48

1776 atoms, 11 bonds, 56 pseudobonds, 217 residues, 3 models selected  

> select subtract #11/B:63

1765 atoms, 11 bonds, 56 pseudobonds, 216 residues, 3 models selected  

> select subtract #11/B:64

1762 atoms, 9 bonds, 55 pseudobonds, 215 residues, 3 models selected  

> select subtract #11/B:65

1755 atoms, 9 bonds, 55 pseudobonds, 214 residues, 3 models selected  

> select subtract #11/B:29

1746 atoms, 9 bonds, 55 pseudobonds, 213 residues, 3 models selected  

> select subtract #11/B:30

1735 atoms, 9 bonds, 55 pseudobonds, 212 residues, 3 models selected  

> select subtract #11/B:31

1732 atoms, 7 bonds, 54 pseudobonds, 211 residues, 3 models selected  

> select subtract #11/B:37

1723 atoms, 7 bonds, 54 pseudobonds, 210 residues, 3 models selected  

> select subtract #11/B:60

1716 atoms, 7 bonds, 54 pseudobonds, 209 residues, 3 models selected  

> select subtract #11/B:57

1708 atoms, 7 bonds, 54 pseudobonds, 208 residues, 3 models selected  

> select subtract #11/B:53

1707 atoms, 6 bonds, 50 pseudobonds, 207 residues, 3 models selected  

> select subtract #11/B:61

1701 atoms, 6 bonds, 50 pseudobonds, 206 residues, 3 models selected  

> select subtract #11/B:101@ZN

1700 atoms, 6 bonds, 49 pseudobonds, 205 residues, 3 models selected  

> select subtract #11/B:102@ZN

1699 atoms, 6 bonds, 48 pseudobonds, 204 residues, 2 models selected  

> select subtract #11/B:33

1696 atoms, 4 bonds, 17 pseudobonds, 203 residues, 2 models selected  

> select subtract #11/B:32

1687 atoms, 4 bonds, 17 pseudobonds, 202 residues, 2 models selected  

> select subtract #11/B:35

1673 atoms, 4 bonds, 17 pseudobonds, 201 residues, 2 models selected  

> select subtract #11/B:36

1662 atoms, 4 bonds, 17 pseudobonds, 200 residues, 2 models selected  

> select subtract #11/B:34

1659 atoms, 2 bonds, 1 pseudobond, 199 residues, 2 models selected  

> show sel surfaces

> transparency (#!11 & sel) 60

> select clear

> select #11/A:607@OD1

1 atom, 1 residue, 1 model selected  

> hide sel surfaces

> show sel surfaces

> select clear

> hide #!11 surfaces

> select #11/A:607

8 atoms, 7 bonds, 1 residue, 1 model selected  

> select #11/A:650

7 atoms, 6 bonds, 1 residue, 1 model selected  

> select add #11/A:607

15 atoms, 13 bonds, 2 residues, 2 models selected  

> select add #11/A:693

23 atoms, 20 bonds, 3 residues, 2 models selected  

> select add #11/A:690

30 atoms, 26 bonds, 4 residues, 2 models selected  

> select add #11/A:263

39 atoms, 34 bonds, 5 residues, 2 models selected  

> select add #11/A:691

48 atoms, 42 bonds, 6 residues, 2 models selected  

> select add #11/A:692

54 atoms, 47 bonds, 7 residues, 2 models selected  

> select add #11/A:695

61 atoms, 53 bonds, 8 residues, 2 models selected  

> select add #11/A:694

69 atoms, 60 bonds, 9 residues, 2 models selected  

> select add #11/A:698

80 atoms, 71 bonds, 10 residues, 2 models selected  
Drag select of 3 pseudobonds  

> select add #11/A:607

8 atoms, 7 bonds, 3 pseudobonds, 1 residue, 2 models selected  

> select add #11/A:693

16 atoms, 14 bonds, 3 pseudobonds, 2 residues, 3 models selected  

> select add #11/A:694

24 atoms, 21 bonds, 3 pseudobonds, 3 residues, 3 models selected  

> select add #11/A:690

31 atoms, 27 bonds, 3 pseudobonds, 4 residues, 3 models selected  

> select add #11/A:691

40 atoms, 35 bonds, 3 pseudobonds, 5 residues, 3 models selected  

> select add #11/A:692

46 atoms, 40 bonds, 3 pseudobonds, 6 residues, 3 models selected  

> select add #11/A:698

57 atoms, 51 bonds, 3 pseudobonds, 7 residues, 3 models selected  

> select add #11/A:695

64 atoms, 57 bonds, 3 pseudobonds, 8 residues, 3 models selected  

> select add #11/A:1348

74 atoms, 67 bonds, 3 pseudobonds, 9 residues, 3 models selected  

> select add #11/A:263

83 atoms, 75 bonds, 3 pseudobonds, 10 residues, 3 models selected  

> select add #11/A:650

90 atoms, 81 bonds, 3 pseudobonds, 11 residues, 3 models selected  

> select add #11/A:1380

101 atoms, 91 bonds, 3 pseudobonds, 12 residues, 3 models selected  

> select add #11/A:1381

112 atoms, 102 bonds, 3 pseudobonds, 13 residues, 3 models selected  

> select add #11/A:1183

118 atoms, 107 bonds, 3 pseudobonds, 14 residues, 3 models selected  

> select add #11/B:28

125 atoms, 114 bonds, 3 pseudobonds, 15 residues, 3 models selected  

> select add #11/A:1185

130 atoms, 118 bonds, 3 pseudobonds, 16 residues, 3 models selected  

> select add #11/A:1391

137 atoms, 124 bonds, 3 pseudobonds, 17 residues, 3 models selected  

> select add #11/A:1392

151 atoms, 139 bonds, 3 pseudobonds, 18 residues, 3 models selected  

> show sel surfaces

> ui tool show ""Render/Select by Attribute""

> color byattribute a:bfactor #!11 & sel target absc palette
> 0,#0c7d82:4.5,white:9,#a02760

151 atoms, 18 residues, 2 surfaces, atom bfactor range 6 to 9  

> select add #11/B:29

160 atoms, 147 bonds, 3 pseudobonds, 19 residues, 4 models selected  

> hide sel surfaces

> select subtract #11/B:29

151 atoms, 139 bonds, 3 pseudobonds, 18 residues, 4 models selected  

> select subtract #11/B:28

144 atoms, 132 bonds, 3 pseudobonds, 17 residues, 4 models selected  

> show sel surfaces

> color byattribute a:bfactor #!11 & sel target absc palette
> 0,#0c7d82:4.5,white:9,#a02760

144 atoms, 17 residues, 1 surfaces, atom bfactor range 6 to 9  

> color byattribute a:bfactor #!11 & sel target absc palette
> 0,#0c7d82:4.5,white:9,#a02760

144 atoms, 17 residues, 1 surfaces, atom bfactor range 6 to 9  

> color byattribute a:bfactor #!11 & sel target absc palette
> 0,#0c7d82:4.5,white:9,#a02760

144 atoms, 17 residues, 1 surfaces, atom bfactor range 6 to 9  

> hide sel surfaces

> select clear

> show #!11 surfaces

> hide #!11 surfaces

> select #11/A

11138 atoms, 11335 bonds, 22 pseudobonds, 1416 residues, 3 models selected  

> show sel surfaces

> transparency (#!11 & sel) 60

> select clear

> set bgColor black

> set bgColor transparent

> select add #11/B:25

10 atoms, 10 bonds, 1 residue, 1 model selected  

> select add #11/B:26

18 atoms, 17 bonds, 2 residues, 2 models selected  

> select add #11/B:27

22 atoms, 20 bonds, 3 residues, 2 models selected  

> select add #11/B:29

31 atoms, 28 bonds, 4 residues, 2 models selected  

> select add #11/A:688@O

32 atoms, 28 bonds, 5 residues, 2 models selected  

> select subtract #11/A:688@O

31 atoms, 28 bonds, 4 residues, 3 models selected  

> select add #11/B:37

40 atoms, 36 bonds, 5 residues, 2 models selected  

> select add #11/B:39

49 atoms, 44 bonds, 6 residues, 2 models selected  

> select add #11/B:40

53 atoms, 47 bonds, 7 residues, 2 models selected  

> select add #11/B:41

61 atoms, 54 bonds, 8 residues, 2 models selected  

> select add #11/B:42

68 atoms, 60 bonds, 9 residues, 2 models selected  

> select add #11/B:43

77 atoms, 68 bonds, 10 residues, 2 models selected  

> select add #11/B:48

89 atoms, 80 bonds, 11 residues, 2 models selected  

> select add #11/B:49

97 atoms, 87 bonds, 12 residues, 2 models selected  

> select add #11/B:50

103 atoms, 92 bonds, 13 residues, 2 models selected  

> select add #11/B:47

113 atoms, 102 bonds, 14 residues, 2 models selected  

> select add #11/B:46

121 atoms, 109 bonds, 15 residues, 2 models selected  

> select add #11/B:45

129 atoms, 116 bonds, 16 residues, 2 models selected  

> select add #11/B:44

135 atoms, 121 bonds, 17 residues, 2 models selected  

> select add #11/B:51

143 atoms, 128 bonds, 18 residues, 2 models selected  

> select add #11/B:54

151 atoms, 135 bonds, 19 residues, 2 models selected  

> select add #11/B:55

158 atoms, 141 bonds, 20 residues, 2 models selected  

> select add #11/B:58

166 atoms, 148 bonds, 21 residues, 2 models selected  

> select add #11/B:64

172 atoms, 153 bonds, 22 residues, 2 models selected  

> select add #11/B:63

183 atoms, 163 bonds, 23 residues, 2 models selected  

> select add #11/B:62

189 atoms, 168 bonds, 24 residues, 2 models selected  

> select add #11/B:61

195 atoms, 173 bonds, 25 residues, 2 models selected  

> select add #11/B:66

203 atoms, 180 bonds, 26 residues, 2 models selected  

> select add #11/B:67

209 atoms, 185 bonds, 27 residues, 2 models selected  

> select add #11/B:68

218 atoms, 193 bonds, 28 residues, 2 models selected  

> select add #11/B:69

226 atoms, 200 bonds, 29 residues, 2 models selected  

> select add #11/B:70

233 atoms, 207 bonds, 30 residues, 2 models selected  

> select add #11/B:71

241 atoms, 214 bonds, 31 residues, 2 models selected  

> select add #11/B:72

248 atoms, 221 bonds, 32 residues, 2 models selected  

> select add #11/B:73

255 atoms, 227 bonds, 33 residues, 2 models selected  

> color (#!11 & sel) #a9a9a9ff

> color (#!11 & sel) #c0c0c0ff

> set bgColor white

> set bgColor #ffffff00

> color (#!11 & sel) #00fdffff

> color (#!11 & sel) #73fcd6ff

> color (#!11 & sel) #fffc79ff

> color (#!11 & sel) #ff7e79ff

> color (#!11 & sel) #424242ff

> color (#!11 & sel) #797979ff

> color (#!11 & sel) #d6d6d6ff

> color (#!11 & sel) #c0c0c0ff

> select clear

> select #11 /A :263 #11 /A :605 #11 /A :607 #11 /A :608 #11 /A :650 #11 /A
> :651 #11 /A :690 #11 /A :691 #11 /A :692 #11 /A :693 #11 /A :694 #11 /A :695
> #11 /A :698 #11 /A :1183 #11 /A :1184 #11 /A :1185 #11 /A :1380 #11 /A :1381
> #11 /A :1391 #11 /A :1392 #11 /B :28 #11 /B :30 #11 /B :31 #11 /B :32 #11 /B
> :33 #11 /B :34 #11 /B :35 #11 /B :36 #11 /B :52 #11 /B :53 #11 /B :56 #11 /B
> :57 #11 /B :59 #11 /B :60 #11 /B :65

283 atoms, 278 bonds, 292 pseudobonds, 35 residues, 2 models selected  

> select #11 /A :263 #11 /A :605 #11 /A :607 #11 /A :608 #11 /A :650 #11 /A
> :651 #11 /A :690 #11 /A :691 #11 /A :692 #11 /A :693 #11 /A :694 #11 /A :695
> #11 /A :698 #11 /A :1183 #11 /A :1184 #11 /A :1185 #11 /A :1380 #11 /A :1381
> #11 /A :1391 #11 /A :1392 #11 /B :28 #11 /B :30 #11 /B :31 #11 /B :32 #11 /B
> :33 #11 /B :34 #11 /B :35 #11 /B :36 #11 /B :52 #11 /B :53 #11 /B :56 #11 /B
> :57 #11 /B :59 #11 /B :60 #11 /B :65

283 atoms, 278 bonds, 292 pseudobonds, 35 residues, 2 models selected  

> show sel atoms

Cell requested for row 0 is out of bounds for table with 0 rows! Resizing
table model.  

> select #11 /A :1348 #11 /B :38

18 atoms, 17 bonds, 1 pseudobond, 2 residues, 2 models selected  

Cell requested for row 0 is out of bounds for table with 0 rows! Resizing
table model.  

> show sel atoms

Cell requested for row 0 is out of bounds for table with 0 rows! Resizing
table model.  

> select #11 /A :263 #11 /A :605 #11 /A :607 #11 /A :608 #11 /A :650 #11 /A
> :651 #11 /A :690 #11 /A :691 #11 /A :692 #11 /A :693 #11 /A :694 #11 /A :695
> #11 /A :698 #11 /A :1183 #11 /A :1184 #11 /A :1185 #11 /A :1380 #11 /A :1381
> #11 /A :1391 #11 /A :1392 #11 /B :28 #11 /B :30 #11 /B :31 #11 /B :32 #11 /B
> :33 #11 /B :34 #11 /B :35 #11 /B :36 #11 /B :52 #11 /B :53 #11 /B :56 #11 /B
> :57 #11 /B :59 #11 /B :60 #11 /B :65

283 atoms, 278 bonds, 292 pseudobonds, 35 residues, 2 models selected  

Cell requested for row 0 is out of bounds for table with 0 rows! Resizing
table model.  

> select clear

> hide #!11 surfaces

> select #11 /A :263 #11 /A :605 #11 /A :607 #11 /A :608 #11 /A :650 #11 /A
> :651 #11 /A :690 #11 /A :691 #11 /A :692 #11 /A :693 #11 /A :694 #11 /A :695
> #11 /A :698 #11 /A :1183 #11 /A :1184 #11 /A :1185 #11 /A :1380 #11 /A :1381
> #11 /A :1391 #11 /A :1392 #11 /B :28 #11 /B :30 #11 /B :31 #11 /B :32 #11 /B
> :33 #11 /B :34 #11 /B :35 #11 /B :36 #11 /B :52 #11 /B :53 #11 /B :56 #11 /B
> :57 #11 /B :59 #11 /B :60 #11 /B :65

283 atoms, 278 bonds, 292 pseudobonds, 35 residues, 2 models selected  

> select #11/A:1348

10 atoms, 10 bonds, 1 residue, 1 model selected  

> select #11 /A :263 #11 /A :605 #11 /A :607 #11 /A :608 #11 /A :650 #11 /A
> :651 #11 /A :690 #11 /A :691 #11 /A :692 #11 /A :693 #11 /A :694 #11 /A :695
> #11 /A :698 #11 /A :1183 #11 /A :1184 #11 /A :1185 #11 /A :1380 #11 /A :1381
> #11 /A :1391 #11 /A :1392 #11 /B :28 #11 /B :30 #11 /B :31 #11 /B :32 #11 /B
> :33 #11 /B :34 #11 /B :35 #11 /B :36 #11 /B :52 #11 /B :53 #11 /B :56 #11 /B
> :57 #11 /B :59 #11 /B :60 #11 /B :65

283 atoms, 278 bonds, 292 pseudobonds, 35 residues, 2 models selected  

> select add #11/A:1348

293 atoms, 288 bonds, 292 pseudobonds, 36 residues, 4 models selected  

> select add #11/B:38

301 atoms, 295 bonds, 292 pseudobonds, 37 residues, 4 models selected  

> ui tool show Contacts

> contacts sel intraRes true ignoreHiddenModels true select true color #fffb00
> reveal true log true
    
    
    Allowed overlap: -0.4
    H-bond overlap reduction: 0.4
    Ignore contacts between atoms separated by 4 bonds or less
    Detect intra-residue contacts: True
    Detect intra-molecule contacts: True
    
    231 contacts
                      atom1                                       atom2                     overlap  distance
    my_msa_consurf_7ckl.pdb #11/B PHE 36 CZ     my_msa_consurf_7ckl.pdb #11/A LYS 263 NZ     0.802    2.598
    my_msa_consurf_7ckl.pdb #11/B PHE 36 CE2    my_msa_consurf_7ckl.pdb #11/A LYS 263 NZ     0.709    2.691
    my_msa_consurf_7ckl.pdb #11/B TRP 35 NE1    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CZ3   0.691    2.709
    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CZ3  my_msa_consurf_7ckl.pdb #11/B TRP 35 CD1     0.394    3.126
    my_msa_consurf_7ckl.pdb #11/A SER 692 O     my_msa_consurf_7ckl.pdb #11/A ARG 697 NH1    0.373    2.287
    my_msa_consurf_7ckl.pdb #11/A SER 651 CB    my_msa_consurf_7ckl.pdb #11/A VAL 1377 CG1   0.352    3.408
    my_msa_consurf_7ckl.pdb #11/B CYS 53 SG     my_msa_consurf_7ckl.pdb #11/B SER 33 OG      0.341    2.489
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CD     my_msa_consurf_7ckl.pdb #11/B HIS 47 ND1     0.304    3.216
    my_msa_consurf_7ckl.pdb #11/B CYS 53 CB     my_msa_consurf_7ckl.pdb #11/B CYS 50 SG      0.233    3.417
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CG     my_msa_consurf_7ckl.pdb #11/B HIS 47 ND1     0.233    3.287
    my_msa_consurf_7ckl.pdb #11/B PHE 30 CZ     my_msa_consurf_7ckl.pdb #11/A ARG 1380 NH2   0.224    3.176
    my_msa_consurf_7ckl.pdb #11/A MET 1184 CB   my_msa_consurf_7ckl.pdb #11/A HIS 1186 CD2   0.216    3.424
    my_msa_consurf_7ckl.pdb #11/A VAL 690 CG2   my_msa_consurf_7ckl.pdb #11/A ARG 697 NH2    0.206    3.314
    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CZ2  my_msa_consurf_7ckl.pdb #11/B LYS 32 CG      0.192    3.448
    my_msa_consurf_7ckl.pdb #11/A SER 651 O     my_msa_consurf_7ckl.pdb #11/A VAL 261 CG2    0.186    3.114
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CE     my_msa_consurf_7ckl.pdb #11/B HIS 47 CB      0.174    3.586
    my_msa_consurf_7ckl.pdb #11/A SER 692 O     my_msa_consurf_7ckl.pdb #11/A MET 693 CG     0.151    3.149
    my_msa_consurf_7ckl.pdb #11/B ASN 52 O      my_msa_consurf_7ckl.pdb #11/B THR 55 CG2     0.144    3.156
    my_msa_consurf_7ckl.pdb #11/B SER 33 CB     my_msa_consurf_7ckl.pdb #11/B CYS 53 SG      0.144    3.506
    my_msa_consurf_7ckl.pdb #11/A THR 695 CG2   my_msa_consurf_7ckl.pdb #11/B TRP 35 CZ2     0.140    3.500
    my_msa_consurf_7ckl.pdb #11/A VAL 650 CG2   my_msa_consurf_7ckl.pdb #11/B TRP 35 CE3     0.134    3.506
    my_msa_consurf_7ckl.pdb #11/A PHE 1381 CE1  my_msa_consurf_7ckl.pdb #11/B TRP 35 O       0.134    3.046
    my_msa_consurf_7ckl.pdb #11/A MET 693 SD    my_msa_consurf_7ckl.pdb #11/A ASN 696 ND2    0.125    2.885
    my_msa_consurf_7ckl.pdb #11/B CYS 53 CB     my_msa_consurf_7ckl.pdb #11/B SER 33 OG      0.123    3.217
    my_msa_consurf_7ckl.pdb #11/A LYS 263 NZ    my_msa_consurf_7ckl.pdb #11/B PHE 36 CE1     0.105    3.295
    my_msa_consurf_7ckl.pdb #11/A LYS 263 CB    my_msa_consurf_7ckl.pdb #11/A TYR 649 OH     0.101    3.239
    my_msa_consurf_7ckl.pdb #11/B PHE 36 CD2    my_msa_consurf_7ckl.pdb #11/B CYS 34 O       0.101    3.079
    my_msa_consurf_7ckl.pdb #11/A ASP 605 OD1   my_msa_consurf_7ckl.pdb #11/B VAL 60 CG1     0.099    3.201
    my_msa_consurf_7ckl.pdb #11/A VAL 690 CG1   my_msa_consurf_7ckl.pdb #11/A SER 687 OG     0.095    3.245
    my_msa_consurf_7ckl.pdb #11/A VAL 1391 CG1  my_msa_consurf_7ckl.pdb #11/A PHE 698 CE2    0.088    3.552
    my_msa_consurf_7ckl.pdb #11/A MET 693 CB    my_msa_consurf_7ckl.pdb #11/A ASN 696 ND2    0.077    3.443
    my_msa_consurf_7ckl.pdb #11/A VAL 650 CG2   my_msa_consurf_7ckl.pdb #11/B TRP 35 CZ3     0.075    3.565
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CB     my_msa_consurf_7ckl.pdb #11/B HIS 47 CE1     0.074    3.566
    my_msa_consurf_7ckl.pdb #11/B VAL 60 CG2    my_msa_consurf_7ckl.pdb #11/A ASN 607 ND2    0.071    3.449
    my_msa_consurf_7ckl.pdb #11/B PHE 30 CD2    my_msa_consurf_7ckl.pdb #11/B GLN 29 C       0.063    3.307
    my_msa_consurf_7ckl.pdb #11/B ASN 38 N      my_msa_consurf_7ckl.pdb #11/B GLU 37 CD      0.063    3.457
    my_msa_consurf_7ckl.pdb #11/B ASN 52 O      my_msa_consurf_7ckl.pdb #11/B LEU 56 CB      0.062    3.238
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CD     my_msa_consurf_7ckl.pdb #11/B HIS 47 CE1     0.061    3.579
    my_msa_consurf_7ckl.pdb #11/B TRP 35 NE1    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CE3   0.054    3.346
    my_msa_consurf_7ckl.pdb #11/A LYS 263 CD    my_msa_consurf_7ckl.pdb #11/A TYR 649 OH     0.053    3.287
    my_msa_consurf_7ckl.pdb #11/A VAL 690 CG2   my_msa_consurf_7ckl.pdb #11/A SER 687 O      0.052    3.248
    my_msa_consurf_7ckl.pdb #11/A ASP 605 O     my_msa_consurf_7ckl.pdb #11/A MET 693 SD     0.048    3.142
    my_msa_consurf_7ckl.pdb #11/B TRP 35 O      my_msa_consurf_7ckl.pdb #11/A PHE 1381 CZ    0.034    3.146
    my_msa_consurf_7ckl.pdb #11/B ASN 52 CA     my_msa_consurf_7ckl.pdb #11/B THR 55 CG2     0.028    3.732
    my_msa_consurf_7ckl.pdb #11/B CYS 31 SG     my_msa_consurf_7ckl.pdb #11/B SER 33 OG      0.027    2.803
    my_msa_consurf_7ckl.pdb #11/A PHE 1381 O    my_msa_consurf_7ckl.pdb #11/A VAL 1391 O     0.023    2.817
    my_msa_consurf_7ckl.pdb #11/B TRP 35 CE2    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CZ3   0.022    3.348
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CG     my_msa_consurf_7ckl.pdb #11/B HIS 47 CE1     0.016    3.624
    my_msa_consurf_7ckl.pdb #11/B CYS 31 SG     my_msa_consurf_7ckl.pdb #11/B CYS 53 CB      0.012    3.638
    my_msa_consurf_7ckl.pdb #11/A VAL 1391 CG1  my_msa_consurf_7ckl.pdb #11/A VAL 1396 CG1   0.010    3.750
    my_msa_consurf_7ckl.pdb #11/A ASP 605 O     my_msa_consurf_7ckl.pdb #11/A ASP 605 OD1    0.007    2.833
    my_msa_consurf_7ckl.pdb #11/A MET 694 O     my_msa_consurf_7ckl.pdb #11/A PHE 698 CB     0.001    3.299
    my_msa_consurf_7ckl.pdb #11/A SER 692 OG    my_msa_consurf_7ckl.pdb #11/B LEU 57 CD2     -0.004    3.344
    my_msa_consurf_7ckl.pdb #11/A ASN 607 O     my_msa_consurf_7ckl.pdb #11/A GLU 608 OE1    -0.009    2.849
    my_msa_consurf_7ckl.pdb #11/A MET 694 SD    my_msa_consurf_7ckl.pdb #11/A ARG 697 NH2    -0.010    3.020
    my_msa_consurf_7ckl.pdb #11/A SER 1183 CB   my_msa_consurf_7ckl.pdb #11/A LYS 1179 O     -0.014    3.314
    my_msa_consurf_7ckl.pdb #11/A ASN 607 CB    my_msa_consurf_7ckl.pdb #11/B VAL 60 CG2     -0.015    3.775
    my_msa_consurf_7ckl.pdb #11/A ASN 607 ND2   my_msa_consurf_7ckl.pdb #11/B LEU 56 O       -0.018    2.678
    my_msa_consurf_7ckl.pdb #11/B CYS 31 SG     my_msa_consurf_7ckl.pdb #11/B ZN 101 ZN      -0.020    2.390
    my_msa_consurf_7ckl.pdb #11/B CYS 53 SG     my_msa_consurf_7ckl.pdb #11/B ZN 101 ZN      -0.022    2.392
    my_msa_consurf_7ckl.pdb #11/B CYS 34 SG     my_msa_consurf_7ckl.pdb #11/B ZN 101 ZN      -0.029    2.399
    my_msa_consurf_7ckl.pdb #11/A PHE 698 O     my_msa_consurf_7ckl.pdb #11/A LEU 702 CB     -0.034    3.334
    my_msa_consurf_7ckl.pdb #11/A MET 693 CG    my_msa_consurf_7ckl.pdb #11/A ASN 696 ND2    -0.036    3.556
    my_msa_consurf_7ckl.pdb #11/A VAL 690 CG2   my_msa_consurf_7ckl.pdb #11/A ARG 697 CZ     -0.038    3.528
    my_msa_consurf_7ckl.pdb #11/A LYS 263 NZ    my_msa_consurf_7ckl.pdb #11/B PHE 36 CD2     -0.039    3.439
    my_msa_consurf_7ckl.pdb #11/B VAL 60 CG2    my_msa_consurf_7ckl.pdb #11/A ASN 607 CG     -0.040    3.530
    my_msa_consurf_7ckl.pdb #11/B SER 33 O      my_msa_consurf_7ckl.pdb #11/A MET 693 CA     -0.050    3.350
    my_msa_consurf_7ckl.pdb #11/B PHE 30 CD2    my_msa_consurf_7ckl.pdb #11/B GLN 29 O       -0.056    3.236
    my_msa_consurf_7ckl.pdb #11/A THR 695 CG2   my_msa_consurf_7ckl.pdb #11/B TRP 35 NE1     -0.059    3.579
    my_msa_consurf_7ckl.pdb #11/B LEU 56 CD2    my_msa_consurf_7ckl.pdb #11/A SER 692 CB     -0.060    3.820
    my_msa_consurf_7ckl.pdb #11/B LEU 57 CD2    my_msa_consurf_7ckl.pdb #11/B CYS 53 O       -0.061    3.361
    my_msa_consurf_7ckl.pdb #11/A SER 692 C     my_msa_consurf_7ckl.pdb #11/A ARG 697 NH1    -0.066    3.316
    my_msa_consurf_7ckl.pdb #11/A ARG 1380 NH2  my_msa_consurf_7ckl.pdb #11/B PHE 30 CE2     -0.066    3.466
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CE     my_msa_consurf_7ckl.pdb #11/B HIS 47 ND1     -0.076    3.596
    my_msa_consurf_7ckl.pdb #11/B PHE 36 CD2    my_msa_consurf_7ckl.pdb #11/B TRP 35 C       -0.078    3.448
    my_msa_consurf_7ckl.pdb #11/A ASP 605 O     my_msa_consurf_7ckl.pdb #11/A MET 693 CE     -0.079    3.379
    my_msa_consurf_7ckl.pdb #11/A VAL 650 CG1   my_msa_consurf_7ckl.pdb #11/A VAL 1382 CG1   -0.079    3.839
    my_msa_consurf_7ckl.pdb #11/B CYS 53 O      my_msa_consurf_7ckl.pdb #11/B LEU 57 CB      -0.080    3.380
    my_msa_consurf_7ckl.pdb #11/A ASP 605 CG    my_msa_consurf_7ckl.pdb #11/B VAL 60 CG1     -0.081    3.841
    my_msa_consurf_7ckl.pdb #11/A SER 651 C     my_msa_consurf_7ckl.pdb #11/A ASP 652 OD1    -0.083    3.113
    my_msa_consurf_7ckl.pdb #11/A MET 693 N     my_msa_consurf_7ckl.pdb #11/B SER 33 CB      -0.083    3.603
    my_msa_consurf_7ckl.pdb #11/A ALA 1185 CB   my_msa_consurf_7ckl.pdb #11/B PRO 28 CG      -0.083    3.843
    my_msa_consurf_7ckl.pdb #11/A ASN 607 O     my_msa_consurf_7ckl.pdb #11/A ASN 607 OD1    -0.089    2.929
    my_msa_consurf_7ckl.pdb #11/B PHE 30 CG     my_msa_consurf_7ckl.pdb #11/B GLN 29 O       -0.089    3.119
    my_msa_consurf_7ckl.pdb #11/B SER 33 O      my_msa_consurf_7ckl.pdb #11/A MET 694 N      -0.089    2.749
    my_msa_consurf_7ckl.pdb #11/A LYS 263 O     my_msa_consurf_7ckl.pdb #11/A LEU 267 CG     -0.094    3.394
    my_msa_consurf_7ckl.pdb #11/B PHE 30 CA     my_msa_consurf_7ckl.pdb #11/B LEU 41 CD1     -0.096    3.856
    my_msa_consurf_7ckl.pdb #11/B LYS 32 NZ     my_msa_consurf_7ckl.pdb #11/B HIS 47 CB      -0.096    3.616
    my_msa_consurf_7ckl.pdb #11/A ARG 1380 CA   my_msa_consurf_7ckl.pdb #11/A HIS 1186 O     -0.102    3.402
    my_msa_consurf_7ckl.pdb #11/A MET 1184 CE   my_msa_consurf_7ckl.pdb #11/A HIS 1186 NE2   -0.108    3.628
    my_msa_consurf_7ckl.pdb #11/A LYS 263 CE    my_msa_consurf_7ckl.pdb #11/A TYR 649 CE2    -0.109    3.749
    my_msa_consurf_7ckl.pdb #11/A PHE 1381 CD2  my_msa_consurf_7ckl.pdb #11/A ARG 1380 O     -0.117    3.297
    my_msa_consurf_7ckl.pdb #11/A TRP 1392 O    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CD1   -0.121    3.301
    my_msa_consurf_7ckl.pdb #11/B CYS 31 SG     my_msa_consurf_7ckl.pdb #11/B CYS 50 N       -0.123    3.133
    my_msa_consurf_7ckl.pdb #11/A SER 651 O     my_msa_consurf_7ckl.pdb #11/A ASP 652 OD1    -0.124    2.964
    my_msa_consurf_7ckl.pdb #11/B CYS 31 CB     my_msa_consurf_7ckl.pdb #11/B CYS 50 N       -0.127    3.647
    my_msa_consurf_7ckl.pdb #11/A GLU 608 CB    my_msa_consurf_7ckl.pdb #11/A CYS 606 SG     -0.133    3.783
    my_msa_consurf_7ckl.pdb #11/A LYS 691 NZ    my_msa_consurf_7ckl.pdb #11/A GLU 688 O      -0.134    2.794
    my_msa_consurf_7ckl.pdb #11/B CYS 34 SG     my_msa_consurf_7ckl.pdb #11/B GLU 37 CB      -0.134    3.784
    my_msa_consurf_7ckl.pdb #11/B CYS 31 SG     my_msa_consurf_7ckl.pdb #11/B LEU 49 CA      -0.138    3.788
    my_msa_consurf_7ckl.pdb #11/A PHE 698 CD2   my_msa_consurf_7ckl.pdb #11/A VAL 1391 CG1   -0.138    3.778
    my_msa_consurf_7ckl.pdb #11/A ALA 1185 CB   my_msa_consurf_7ckl.pdb #11/B PRO 28 CB      -0.139    3.899
    my_msa_consurf_7ckl.pdb #11/A MET 693 CE    my_msa_consurf_7ckl.pdb #11/A ASN 696 ND2    -0.140    3.660
    my_msa_consurf_7ckl.pdb #11/B LEU 57 CD1    my_msa_consurf_7ckl.pdb #11/B PRO 65 CG      -0.140    3.900
    my_msa_consurf_7ckl.pdb #11/B CYS 31 SG     my_msa_consurf_7ckl.pdb #11/B LEU 49 CD1     -0.143    3.793
    my_msa_consurf_7ckl.pdb #11/B PHE 30 N      my_msa_consurf_7ckl.pdb #11/B LEU 41 CD1     -0.146    3.666
    my_msa_consurf_7ckl.pdb #11/A VAL 690 CG1   my_msa_consurf_7ckl.pdb #11/A ASP 689 O      -0.155    3.455
    my_msa_consurf_7ckl.pdb #11/A MET 693 N     my_msa_consurf_7ckl.pdb #11/B SER 33 CA      -0.156    3.676
    my_msa_consurf_7ckl.pdb #11/A LYS 263 O     my_msa_consurf_7ckl.pdb #11/A LEU 267 CB     -0.162    3.462
    my_msa_consurf_7ckl.pdb #11/A GLU 608 C     my_msa_consurf_7ckl.pdb #11/A LEU 609 CD2    -0.171    3.661
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CE     my_msa_consurf_7ckl.pdb #11/B HIS 47 CG      -0.173    3.663
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CB     my_msa_consurf_7ckl.pdb #11/B ILE 66 CD1     -0.174    3.934
    my_msa_consurf_7ckl.pdb #11/A LYS 263 CB    my_msa_consurf_7ckl.pdb #11/A TYR 649 CE1    -0.178    3.818
    my_msa_consurf_7ckl.pdb #11/B CYS 31 O      my_msa_consurf_7ckl.pdb #11/B TRP 35 CA      -0.180    3.480
    my_msa_consurf_7ckl.pdb #11/B PRO 65 CD     my_msa_consurf_7ckl.pdb #11/B ARG 63 O       -0.182    3.482
    my_msa_consurf_7ckl.pdb #11/A PHE 698 CD1   my_msa_consurf_7ckl.pdb #11/A ILE 646 CG1    -0.182    3.822
    my_msa_consurf_7ckl.pdb #11/B TRP 35 CD1    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CH2   -0.183    3.703
    my_msa_consurf_7ckl.pdb #11/B PRO 65 N      my_msa_consurf_7ckl.pdb #11/B ARG 63 O       -0.183    3.243
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CD     my_msa_consurf_7ckl.pdb #11/B HIS 47 CG      -0.187    3.677
    my_msa_consurf_7ckl.pdb #11/B LEU 56 O      my_msa_consurf_7ckl.pdb #11/B LEU 56 CD1     -0.189    3.489
    my_msa_consurf_7ckl.pdb #11/A HIS 1348 N    my_msa_consurf_7ckl.pdb #11/A LEU 1347 CD2   -0.191    3.711
    my_msa_consurf_7ckl.pdb #11/A ARG 1380 CD   my_msa_consurf_7ckl.pdb #11/A ASP 652 OD2    -0.192    3.492
    my_msa_consurf_7ckl.pdb #11/A TRP 1392 NE1  my_msa_consurf_7ckl.pdb #11/B LYS 32 CE      -0.196    3.716
    my_msa_consurf_7ckl.pdb #11/A THR 695 O     my_msa_consurf_7ckl.pdb #11/A LYS 699 CB     -0.196    3.496
    my_msa_consurf_7ckl.pdb #11/A PHE 698 O     my_msa_consurf_7ckl.pdb #11/A PHE 698 CD1    -0.201    3.381
    my_msa_consurf_7ckl.pdb #11/A SER 651 OG    my_msa_consurf_7ckl.pdb #11/A ALA 648 C      -0.201    3.271
    my_msa_consurf_7ckl.pdb #11/A LYS 263 CE    my_msa_consurf_7ckl.pdb #11/B PHE 36 CZ      -0.204    3.844
    my_msa_consurf_7ckl.pdb #11/A SER 692 N     my_msa_consurf_7ckl.pdb #11/A ARG 697 NH1    -0.213    3.493
    my_msa_consurf_7ckl.pdb #11/A LYS 263 CB    my_msa_consurf_7ckl.pdb #11/A TYR 649 CZ     -0.215    3.705
    my_msa_consurf_7ckl.pdb #11/A PHE 698 O     my_msa_consurf_7ckl.pdb #11/A LEU 702 N      -0.215    2.875
    my_msa_consurf_7ckl.pdb #11/B PRO 28 CB     my_msa_consurf_7ckl.pdb #11/B PHE 30 CD2     -0.217    3.857
    my_msa_consurf_7ckl.pdb #11/A ARG 1380 C    my_msa_consurf_7ckl.pdb #11/A PHE 1381 CD2   -0.220    3.590
    my_msa_consurf_7ckl.pdb #11/A MET 1184 CB   my_msa_consurf_7ckl.pdb #11/A HIS 1186 NE2   -0.220    3.740
    my_msa_consurf_7ckl.pdb #11/B CYS 53 O      my_msa_consurf_7ckl.pdb #11/B LEU 57 N       -0.221    2.881
    my_msa_consurf_7ckl.pdb #11/B ASN 52 O      my_msa_consurf_7ckl.pdb #11/B ASN 52 OD1     -0.222    3.062
    my_msa_consurf_7ckl.pdb #11/A HIS 1348 CB   my_msa_consurf_7ckl.pdb #11/A THR 1344 O     -0.222    3.522
    my_msa_consurf_7ckl.pdb #11/A PHE 698 CZ    my_msa_consurf_7ckl.pdb #11/A VAL 1382 CG2   -0.222    3.862
    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CH2  my_msa_consurf_7ckl.pdb #11/B LYS 32 CA      -0.225    3.865
    my_msa_consurf_7ckl.pdb #11/A MET 694 O     my_msa_consurf_7ckl.pdb #11/A PHE 698 N      -0.226    2.886
    my_msa_consurf_7ckl.pdb #11/A LYS 263 CE    my_msa_consurf_7ckl.pdb #11/B PHE 36 CE2     -0.233    3.873
    my_msa_consurf_7ckl.pdb #11/A GLU 608 O     my_msa_consurf_7ckl.pdb #11/A GLU 611 OE2    -0.235    3.075
    my_msa_consurf_7ckl.pdb #11/B ASN 38 O      my_msa_consurf_7ckl.pdb #11/B LYS 39 CG      -0.239    3.539
    my_msa_consurf_7ckl.pdb #11/A SER 651 OG    my_msa_consurf_7ckl.pdb #11/A ALA 648 O      -0.240    2.720
    my_msa_consurf_7ckl.pdb #11/A MET 693 N     my_msa_consurf_7ckl.pdb #11/B SER 33 C       -0.243    3.493
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CB     my_msa_consurf_7ckl.pdb #11/B HIS 47 ND1     -0.243    3.763
    my_msa_consurf_7ckl.pdb #11/A PHE 1381 CE1  my_msa_consurf_7ckl.pdb #11/B TRP 35 CB      -0.243    3.883
    my_msa_consurf_7ckl.pdb #11/B PHE 36 CD2    my_msa_consurf_7ckl.pdb #11/B TRP 35 CB      -0.246    3.886
    my_msa_consurf_7ckl.pdb #11/A VAL 650 N     my_msa_consurf_7ckl.pdb #11/A TYR 649 CD2    -0.246    3.646
    my_msa_consurf_7ckl.pdb #11/B CYS 31 O      my_msa_consurf_7ckl.pdb #11/B SER 33 N       -0.247    2.907
    my_msa_consurf_7ckl.pdb #11/A LYS 263 CG    my_msa_consurf_7ckl.pdb #11/A TYR 649 OH     -0.251    3.591
    my_msa_consurf_7ckl.pdb #11/B ASN 52 O      my_msa_consurf_7ckl.pdb #11/B LEU 56 N       -0.253    2.913
    my_msa_consurf_7ckl.pdb #11/B PRO 28 O      my_msa_consurf_7ckl.pdb #11/B GLY 27 O       -0.253    3.093
    my_msa_consurf_7ckl.pdb #11/B CYS 31 SG     my_msa_consurf_7ckl.pdb #11/B CYS 50 CB      -0.254    3.904
    my_msa_consurf_7ckl.pdb #11/A GLU 608 O     my_msa_consurf_7ckl.pdb #11/A LEU 609 CD2    -0.254    3.554
    my_msa_consurf_7ckl.pdb #11/B CYS 53 N      my_msa_consurf_7ckl.pdb #11/B CYS 50 SG      -0.256    3.266
    my_msa_consurf_7ckl.pdb #11/A THR 695 O     my_msa_consurf_7ckl.pdb #11/A LYS 699 N      -0.256    2.916
    my_msa_consurf_7ckl.pdb #11/A HIS 1348 CB   my_msa_consurf_7ckl.pdb #11/A GLU 1345 O     -0.256    3.556
    my_msa_consurf_7ckl.pdb #11/B SER 33 CA     my_msa_consurf_7ckl.pdb #11/A MET 693 CA     -0.259    4.019
    my_msa_consurf_7ckl.pdb #11/B CYS 53 SG     my_msa_consurf_7ckl.pdb #11/B CYS 50 SG      -0.259    3.399
    my_msa_consurf_7ckl.pdb #11/A VAL 690 O     my_msa_consurf_7ckl.pdb #11/A SER 692 CB     -0.259    3.559
    my_msa_consurf_7ckl.pdb #11/A LYS 263 O     my_msa_consurf_7ckl.pdb #11/A LEU 267 N      -0.261    2.921
    my_msa_consurf_7ckl.pdb #11/A HIS 1348 N    my_msa_consurf_7ckl.pdb #11/A THR 1344 O     -0.262    2.922
    my_msa_consurf_7ckl.pdb #11/A SER 1183 N    my_msa_consurf_7ckl.pdb #11/A LYS 1179 O     -0.264    2.924
    my_msa_consurf_7ckl.pdb #11/A SER 692 O     my_msa_consurf_7ckl.pdb #11/A MET 693 O      -0.265    3.105
    my_msa_consurf_7ckl.pdb #11/A SER 651 CB    my_msa_consurf_7ckl.pdb #11/A GLY 1379 CA    -0.277    4.037
    my_msa_consurf_7ckl.pdb #11/A SER 651 OG    my_msa_consurf_7ckl.pdb #11/A ALA 648 CA     -0.277    3.617
    my_msa_consurf_7ckl.pdb #11/B ASN 52 C      my_msa_consurf_7ckl.pdb #11/B THR 55 CG2     -0.279    3.769
    my_msa_consurf_7ckl.pdb #11/B TRP 35 CE3    my_msa_consurf_7ckl.pdb #11/A MET 694 CG     -0.284    3.924
    my_msa_consurf_7ckl.pdb #11/B CYS 31 CB     my_msa_consurf_7ckl.pdb #11/B CYS 50 CB      -0.285    4.045
    my_msa_consurf_7ckl.pdb #11/A LYS 263 CD    my_msa_consurf_7ckl.pdb #11/A TYR 649 CZ     -0.288    3.778
    my_msa_consurf_7ckl.pdb #11/B SER 33 O      my_msa_consurf_7ckl.pdb #11/A MET 694 CB     -0.291    3.591
    my_msa_consurf_7ckl.pdb #11/A LYS 263 CA    my_msa_consurf_7ckl.pdb #11/A TYR 649 CE1    -0.291    3.931
    my_msa_consurf_7ckl.pdb #11/B TRP 35 NE1    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CH2   -0.300    3.700
    my_msa_consurf_7ckl.pdb #11/A PHE 698 CZ    my_msa_consurf_7ckl.pdb #11/A LEU 702 CD2    -0.301    3.941
    my_msa_consurf_7ckl.pdb #11/A ALA 1185 N    my_msa_consurf_7ckl.pdb #11/A VAL 1182 O     -0.303    2.963
    my_msa_consurf_7ckl.pdb #11/A THR 695 CG2   my_msa_consurf_7ckl.pdb #11/B TRP 35 CE2     -0.303    3.793
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CG     my_msa_consurf_7ckl.pdb #11/A TRP 1392 CH2   -0.305    3.945
    my_msa_consurf_7ckl.pdb #11/B CYS 53 CA     my_msa_consurf_7ckl.pdb #11/B CYS 50 SG      -0.309    3.959
    my_msa_consurf_7ckl.pdb #11/A VAL 1391 CG2  my_msa_consurf_7ckl.pdb #11/A ASP 1394 CG    -0.309    4.069
    my_msa_consurf_7ckl.pdb #11/B CYS 31 SG     my_msa_consurf_7ckl.pdb #11/B CYS 50 SG      -0.310    3.450
    my_msa_consurf_7ckl.pdb #11/B ASN 38 CB     my_msa_consurf_7ckl.pdb #11/B PHE 30 CE1     -0.312    3.952
    my_msa_consurf_7ckl.pdb #11/A VAL 1391 CG2  my_msa_consurf_7ckl.pdb #11/A ASP 1394 OD2   -0.313    3.613
    my_msa_consurf_7ckl.pdb #11/A HIS 1348 CA   my_msa_consurf_7ckl.pdb #11/A GLU 1345 O     -0.315    3.615
    my_msa_consurf_7ckl.pdb #11/A MET 693 O     my_msa_consurf_7ckl.pdb #11/A ARG 697 CG     -0.316    3.616
    my_msa_consurf_7ckl.pdb #11/B CYS 31 SG     my_msa_consurf_7ckl.pdb #11/B CYS 53 SG      -0.318    3.458
    my_msa_consurf_7ckl.pdb #11/A ASN 607 O     my_msa_consurf_7ckl.pdb #11/A GLU 608 CD     -0.321    3.621
    my_msa_consurf_7ckl.pdb #11/A GLU 608 CA    my_msa_consurf_7ckl.pdb #11/A CYS 606 SG     -0.323    3.973
    my_msa_consurf_7ckl.pdb #11/B CYS 34 O      my_msa_consurf_7ckl.pdb #11/B PHE 36 N       -0.326    2.986
    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CA   my_msa_consurf_7ckl.pdb #11/A VAL 1182 CG1   -0.329    4.089
    my_msa_consurf_7ckl.pdb #11/A ARG 1380 CA   my_msa_consurf_7ckl.pdb #11/A VAL 1187 CA    -0.329    4.089
    my_msa_consurf_7ckl.pdb #11/B TRP 35 CE3    my_msa_consurf_7ckl.pdb #11/A PHE 1381 CD1   -0.333    3.853
    my_msa_consurf_7ckl.pdb #11/A HIS 1348 CB   my_msa_consurf_7ckl.pdb #11/A GLU 1345 CA    -0.338    4.098
    my_msa_consurf_7ckl.pdb #11/B PHE 30 O      my_msa_consurf_7ckl.pdb #11/B TYR 48 CB      -0.340    3.640
    my_msa_consurf_7ckl.pdb #11/A VAL 650 O     my_msa_consurf_7ckl.pdb #11/A SER 651 O      -0.342    3.182
    my_msa_consurf_7ckl.pdb #11/B ASN 38 OD1    my_msa_consurf_7ckl.pdb #11/B LYS 39 CG      -0.343    3.643
    my_msa_consurf_7ckl.pdb #11/B PHE 30 CD1    my_msa_consurf_7ckl.pdb #11/B ASN 38 CB      -0.349    3.989
    my_msa_consurf_7ckl.pdb #11/B PRO 65 CD     my_msa_consurf_7ckl.pdb #11/B CYS 64 SG      -0.349    3.999
    my_msa_consurf_7ckl.pdb #11/A LYS 263 CG    my_msa_consurf_7ckl.pdb #11/A TYR 649 CZ     -0.351    3.841
    my_msa_consurf_7ckl.pdb #11/A ARG 1380 CZ   my_msa_consurf_7ckl.pdb #11/B PHE 30 CZ      -0.353    3.723
    my_msa_consurf_7ckl.pdb #11/A ASN 607 O     my_msa_consurf_7ckl.pdb #11/A GLU 608 CG     -0.353    3.653
    my_msa_consurf_7ckl.pdb #11/A ALA 1185 CA   my_msa_consurf_7ckl.pdb #11/A VAL 1182 O     -0.357    3.657
    my_msa_consurf_7ckl.pdb #11/A MET 693 N     my_msa_consurf_7ckl.pdb #11/B SER 33 O       -0.358    3.018
    my_msa_consurf_7ckl.pdb #11/A VAL 690 CG2   my_msa_consurf_7ckl.pdb #11/A ARG 697 NH1    -0.358    3.878
    my_msa_consurf_7ckl.pdb #11/A HIS 1348 N    my_msa_consurf_7ckl.pdb #11/A GLU 1345 C     -0.359    3.609
    my_msa_consurf_7ckl.pdb #11/A SER 651 C     my_msa_consurf_7ckl.pdb #11/A VAL 261 CG2    -0.359    3.849
    my_msa_consurf_7ckl.pdb #11/B LEU 57 CD2    my_msa_consurf_7ckl.pdb #11/B LEU 56 C       -0.361    3.851
    my_msa_consurf_7ckl.pdb #11/A VAL 690 O     my_msa_consurf_7ckl.pdb #11/A SER 692 N      -0.361    3.021
    my_msa_consurf_7ckl.pdb #11/B TRP 35 CE2    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CE3   -0.362    3.732
    my_msa_consurf_7ckl.pdb #11/A VAL 690 CB    my_msa_consurf_7ckl.pdb #11/A ARG 697 NH1    -0.364    3.884
    my_msa_consurf_7ckl.pdb #11/A PHE 698 CE1   my_msa_consurf_7ckl.pdb #11/A ILE 646 CG1    -0.366    4.006
    my_msa_consurf_7ckl.pdb #11/B ASN 52 O      my_msa_consurf_7ckl.pdb #11/B LEU 56 CA      -0.367    3.667
    my_msa_consurf_7ckl.pdb #11/A PHE 1381 O    my_msa_consurf_7ckl.pdb #11/A VAL 1182 CG1   -0.369    3.669
    my_msa_consurf_7ckl.pdb #11/A PHE 698 CB    my_msa_consurf_7ckl.pdb #11/A THR 695 O      -0.374    3.674
    my_msa_consurf_7ckl.pdb #11/B PHE 30 CE1    my_msa_consurf_7ckl.pdb #11/B ASN 38 ND2     -0.375    3.775
    my_msa_consurf_7ckl.pdb #11/A GLU 608 O     my_msa_consurf_7ckl.pdb #11/A GLU 611 CD     -0.377    3.677
    my_msa_consurf_7ckl.pdb #11/A PHE 1381 O    my_msa_consurf_7ckl.pdb #11/A VAL 1391 CA    -0.378    3.678
    my_msa_consurf_7ckl.pdb #11/B TRP 35 CZ2    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CE3   -0.378    3.898
    my_msa_consurf_7ckl.pdb #11/A MET 694 O     my_msa_consurf_7ckl.pdb #11/A PHE 698 CA     -0.380    3.680
    my_msa_consurf_7ckl.pdb #11/B CYS 31 CB     my_msa_consurf_7ckl.pdb #11/B CYS 34 SG      -0.381    4.031
    my_msa_consurf_7ckl.pdb #11/A MET 693 SD    my_msa_consurf_7ckl.pdb #11/A CYS 606 CA     -0.388    4.038
    my_msa_consurf_7ckl.pdb #11/A MET 1184 CG   my_msa_consurf_7ckl.pdb #11/A LEU 1180 O     -0.388    3.688
    my_msa_consurf_7ckl.pdb #11/A PHE 698 O     my_msa_consurf_7ckl.pdb #11/A LEU 702 CA     -0.389    3.689
    my_msa_consurf_7ckl.pdb #11/A GLU 608 CG    my_msa_consurf_7ckl.pdb #11/B LEU 56 CD2     -0.392    4.152
    my_msa_consurf_7ckl.pdb #11/A SER 1183 CA   my_msa_consurf_7ckl.pdb #11/A LYS 1179 O     -0.392    3.692
    my_msa_consurf_7ckl.pdb #11/B PHE 30 CD1    my_msa_consurf_7ckl.pdb #11/B GLN 29 O       -0.394    3.574
    my_msa_consurf_7ckl.pdb #11/A GLU 608 N     my_msa_consurf_7ckl.pdb #11/A CYS 606 O      -0.394    3.054
    my_msa_consurf_7ckl.pdb #11/B CYS 31 O      my_msa_consurf_7ckl.pdb #11/B TRP 35 N       -0.395    3.055
    my_msa_consurf_7ckl.pdb #11/B TRP 35 CD1    my_msa_consurf_7ckl.pdb #11/B LYS 32 O       -0.396    3.576
    my_msa_consurf_7ckl.pdb #11/A SER 1183 CB   my_msa_consurf_7ckl.pdb #11/A LEU 1180 O     -0.398    3.698
    my_msa_consurf_7ckl.pdb #11/A VAL 690 CG1   my_msa_consurf_7ckl.pdb #11/A VAL 685 O      -0.399    3.699
    my_msa_consurf_7ckl.pdb #11/A THR 695 OG1   my_msa_consurf_7ckl.pdb #11/A ASN 696 OD1    -0.400    2.880
    

  
231 contacts  

> hide #12 models

> select clear

> undo

> contacts sel resSeparation 5 intraRes true ignoreHiddenModels true select
> true color #fffb00 reveal true log true
    
    
    Allowed overlap: -0.4
    H-bond overlap reduction: 0.4
    Ignore contacts between atoms separated by 4 bonds or less
    Ignore contacts between atoms in residues less than 5 apart in sequence
    Detect intra-residue contacts: True
    Detect intra-molecule contacts: True
    
    149 contacts
                      atom1                                       atom2                     overlap  distance
    my_msa_consurf_7ckl.pdb #11/B PHE 36 CZ     my_msa_consurf_7ckl.pdb #11/A LYS 263 NZ     0.802    2.598
    my_msa_consurf_7ckl.pdb #11/B PHE 36 CE2    my_msa_consurf_7ckl.pdb #11/A LYS 263 NZ     0.709    2.691
    my_msa_consurf_7ckl.pdb #11/B TRP 35 NE1    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CZ3   0.691    2.709
    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CZ3  my_msa_consurf_7ckl.pdb #11/B TRP 35 CD1     0.394    3.126
    my_msa_consurf_7ckl.pdb #11/A ARG 697 NH1   my_msa_consurf_7ckl.pdb #11/A SER 692 O      0.373    2.287
    my_msa_consurf_7ckl.pdb #11/A SER 651 CB    my_msa_consurf_7ckl.pdb #11/A VAL 1377 CG1   0.352    3.408
    my_msa_consurf_7ckl.pdb #11/B CYS 53 SG     my_msa_consurf_7ckl.pdb #11/B SER 33 OG      0.341    2.489
    my_msa_consurf_7ckl.pdb #11/B HIS 47 ND1    my_msa_consurf_7ckl.pdb #11/B LYS 32 CD      0.304    3.216
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CG     my_msa_consurf_7ckl.pdb #11/B HIS 47 ND1     0.233    3.287
    my_msa_consurf_7ckl.pdb #11/B PHE 30 CZ     my_msa_consurf_7ckl.pdb #11/A ARG 1380 NH2   0.224    3.176
    my_msa_consurf_7ckl.pdb #11/A VAL 690 CG2   my_msa_consurf_7ckl.pdb #11/A ARG 697 NH2    0.206    3.314
    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CZ2  my_msa_consurf_7ckl.pdb #11/B LYS 32 CG      0.192    3.448
    my_msa_consurf_7ckl.pdb #11/A VAL 261 CG2   my_msa_consurf_7ckl.pdb #11/A SER 651 O      0.186    3.114
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CE     my_msa_consurf_7ckl.pdb #11/B HIS 47 CB      0.174    3.586
    my_msa_consurf_7ckl.pdb #11/B SER 33 CB     my_msa_consurf_7ckl.pdb #11/B CYS 53 SG      0.144    3.506
    my_msa_consurf_7ckl.pdb #11/A THR 695 CG2   my_msa_consurf_7ckl.pdb #11/B TRP 35 CZ2     0.140    3.500
    my_msa_consurf_7ckl.pdb #11/A VAL 650 CG2   my_msa_consurf_7ckl.pdb #11/B TRP 35 CE3     0.134    3.506
    my_msa_consurf_7ckl.pdb #11/A PHE 1381 CE1  my_msa_consurf_7ckl.pdb #11/B TRP 35 O       0.134    3.046
    my_msa_consurf_7ckl.pdb #11/B CYS 53 CB     my_msa_consurf_7ckl.pdb #11/B SER 33 OG      0.123    3.217
    my_msa_consurf_7ckl.pdb #11/A LYS 263 NZ    my_msa_consurf_7ckl.pdb #11/B PHE 36 CE1     0.105    3.295
    my_msa_consurf_7ckl.pdb #11/A VAL 1382 CG1  my_msa_consurf_7ckl.pdb #11/A MET 647 CE     0.102    3.658
    my_msa_consurf_7ckl.pdb #11/A LYS 263 CB    my_msa_consurf_7ckl.pdb #11/A TYR 649 OH     0.101    3.239
    my_msa_consurf_7ckl.pdb #11/B VAL 60 CG1    my_msa_consurf_7ckl.pdb #11/A ASP 605 OD1    0.099    3.201
    my_msa_consurf_7ckl.pdb #11/A VAL 1391 CG1  my_msa_consurf_7ckl.pdb #11/A PHE 698 CE2    0.088    3.552
    my_msa_consurf_7ckl.pdb #11/A VAL 650 CG2   my_msa_consurf_7ckl.pdb #11/B TRP 35 CZ3     0.075    3.565
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CB     my_msa_consurf_7ckl.pdb #11/B HIS 47 CE1     0.074    3.566
    my_msa_consurf_7ckl.pdb #11/B VAL 60 CG2    my_msa_consurf_7ckl.pdb #11/A ASN 607 ND2    0.071    3.449
    my_msa_consurf_7ckl.pdb #11/A HIS 1186 CD2  my_msa_consurf_7ckl.pdb #11/A ASN 1181 OD1   0.067    3.113
    my_msa_consurf_7ckl.pdb #11/B HIS 47 CE1    my_msa_consurf_7ckl.pdb #11/B LYS 32 CD      0.061    3.579
    my_msa_consurf_7ckl.pdb #11/B CYS 50 CB     my_msa_consurf_7ckl.pdb #11/B GLU 37 CG      0.058    3.702
    my_msa_consurf_7ckl.pdb #11/B TRP 35 NE1    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CE3   0.054    3.346
    my_msa_consurf_7ckl.pdb #11/A TYR 649 OH    my_msa_consurf_7ckl.pdb #11/A LYS 263 CD     0.053    3.287
    my_msa_consurf_7ckl.pdb #11/A ASP 605 O     my_msa_consurf_7ckl.pdb #11/A MET 693 SD     0.048    3.142
    my_msa_consurf_7ckl.pdb #11/A VAL 1382 CG2  my_msa_consurf_7ckl.pdb #11/A MET 647 SD     0.043    3.607
    my_msa_consurf_7ckl.pdb #11/A ILE 646 CG1   my_msa_consurf_7ckl.pdb #11/A ILE 701 CG2    0.040    3.720
    my_msa_consurf_7ckl.pdb #11/B TRP 35 O      my_msa_consurf_7ckl.pdb #11/A PHE 1381 CZ    0.034    3.146
    my_msa_consurf_7ckl.pdb #11/A PHE 1381 O    my_msa_consurf_7ckl.pdb #11/A VAL 1391 O     0.023    2.817
    my_msa_consurf_7ckl.pdb #11/B TRP 35 CE2    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CZ3   0.022    3.348
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CG     my_msa_consurf_7ckl.pdb #11/B HIS 47 CE1     0.016    3.624
    my_msa_consurf_7ckl.pdb #11/B CYS 31 SG     my_msa_consurf_7ckl.pdb #11/B CYS 53 CB      0.012    3.638
    my_msa_consurf_7ckl.pdb #11/A VAL 1391 CG1  my_msa_consurf_7ckl.pdb #11/A VAL 1396 CG1   0.010    3.750
    my_msa_consurf_7ckl.pdb #11/B CYS 64 SG     my_msa_consurf_7ckl.pdb #11/B LEU 71 CD2     0.001    3.649
    my_msa_consurf_7ckl.pdb #11/A SER 692 OG    my_msa_consurf_7ckl.pdb #11/B LEU 57 CD2     -0.004    3.344
    my_msa_consurf_7ckl.pdb #11/A VAL 261 CG2   my_msa_consurf_7ckl.pdb #11/A ASP 652 CA     -0.009    3.769
    my_msa_consurf_7ckl.pdb #11/A VAL 1382 CG2  my_msa_consurf_7ckl.pdb #11/A MET 647 CE     -0.010    3.770
    my_msa_consurf_7ckl.pdb #11/A ASN 607 CB    my_msa_consurf_7ckl.pdb #11/B VAL 60 CG2     -0.015    3.775
    my_msa_consurf_7ckl.pdb #11/A ASN 607 ND2   my_msa_consurf_7ckl.pdb #11/B LEU 56 O       -0.018    2.678
    my_msa_consurf_7ckl.pdb #11/B CYS 31 SG     my_msa_consurf_7ckl.pdb #11/B ZN 101 ZN      -0.020    2.390
    my_msa_consurf_7ckl.pdb #11/B ZN 101 ZN     my_msa_consurf_7ckl.pdb #11/B CYS 50 SG      -0.021    2.391
    my_msa_consurf_7ckl.pdb #11/B ZN 101 ZN     my_msa_consurf_7ckl.pdb #11/B CYS 53 SG      -0.022    2.392
    my_msa_consurf_7ckl.pdb #11/B CYS 64 SG     my_msa_consurf_7ckl.pdb #11/B ZN 102 ZN      -0.023    2.393
    my_msa_consurf_7ckl.pdb #11/B ZN 101 ZN     my_msa_consurf_7ckl.pdb #11/B CYS 34 SG      -0.029    2.399
    my_msa_consurf_7ckl.pdb #11/A VAL 690 CG2   my_msa_consurf_7ckl.pdb #11/A ARG 697 CZ     -0.038    3.528
    my_msa_consurf_7ckl.pdb #11/A LYS 263 NZ    my_msa_consurf_7ckl.pdb #11/B PHE 36 CD2     -0.039    3.439
    my_msa_consurf_7ckl.pdb #11/B VAL 60 CG2    my_msa_consurf_7ckl.pdb #11/A ASN 607 CG     -0.040    3.530
    my_msa_consurf_7ckl.pdb #11/A LEU 609 CD2   my_msa_consurf_7ckl.pdb #11/A LEU 684 O      -0.041    3.341
    my_msa_consurf_7ckl.pdb #11/B SER 33 O      my_msa_consurf_7ckl.pdb #11/A MET 693 CA     -0.050    3.350
    my_msa_consurf_7ckl.pdb #11/A THR 695 CG2   my_msa_consurf_7ckl.pdb #11/B TRP 35 NE1     -0.059    3.579
    my_msa_consurf_7ckl.pdb #11/B LEU 56 CD2    my_msa_consurf_7ckl.pdb #11/A SER 692 CB     -0.060    3.820
    my_msa_consurf_7ckl.pdb #11/A ARG 697 NH1   my_msa_consurf_7ckl.pdb #11/A SER 692 C      -0.066    3.316
    my_msa_consurf_7ckl.pdb #11/A ARG 1380 NH2  my_msa_consurf_7ckl.pdb #11/B PHE 30 CE2     -0.066    3.466
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CE     my_msa_consurf_7ckl.pdb #11/B HIS 47 ND1     -0.076    3.596
    my_msa_consurf_7ckl.pdb #11/A ASP 605 O     my_msa_consurf_7ckl.pdb #11/A MET 693 CE     -0.079    3.379
    my_msa_consurf_7ckl.pdb #11/A VAL 650 CG1   my_msa_consurf_7ckl.pdb #11/A VAL 1382 CG1   -0.079    3.839
    my_msa_consurf_7ckl.pdb #11/A ASP 605 CG    my_msa_consurf_7ckl.pdb #11/B VAL 60 CG1     -0.081    3.841
    my_msa_consurf_7ckl.pdb #11/A MET 693 N     my_msa_consurf_7ckl.pdb #11/B SER 33 CB      -0.083    3.603
    my_msa_consurf_7ckl.pdb #11/A ALA 1185 CB   my_msa_consurf_7ckl.pdb #11/B PRO 28 CG      -0.083    3.843
    my_msa_consurf_7ckl.pdb #11/B SER 33 O      my_msa_consurf_7ckl.pdb #11/A MET 694 N      -0.089    2.749
    my_msa_consurf_7ckl.pdb #11/B LEU 41 CD1    my_msa_consurf_7ckl.pdb #11/B PHE 30 CA      -0.096    3.856
    my_msa_consurf_7ckl.pdb #11/B HIS 47 CB     my_msa_consurf_7ckl.pdb #11/B LYS 32 NZ      -0.096    3.616
    my_msa_consurf_7ckl.pdb #11/A VAL 1382 CG1  my_msa_consurf_7ckl.pdb #11/A MET 647 SD     -0.101    3.751
    my_msa_consurf_7ckl.pdb #11/A HIS 1186 O    my_msa_consurf_7ckl.pdb #11/A ARG 1380 CA    -0.102    3.402
    my_msa_consurf_7ckl.pdb #11/A VAL 1182 CG1  my_msa_consurf_7ckl.pdb #11/A GLY 1393 N     -0.107    3.627
    my_msa_consurf_7ckl.pdb #11/A LYS 263 CE    my_msa_consurf_7ckl.pdb #11/A TYR 649 CE2    -0.109    3.749
    my_msa_consurf_7ckl.pdb #11/B TYR 48 CB     my_msa_consurf_7ckl.pdb #11/B LEU 41 CB      -0.110    3.870
    my_msa_consurf_7ckl.pdb #11/B CYS 50 N      my_msa_consurf_7ckl.pdb #11/B CYS 31 SG      -0.123    3.133
    my_msa_consurf_7ckl.pdb #11/B CYS 31 CB     my_msa_consurf_7ckl.pdb #11/B CYS 50 N       -0.127    3.647
    my_msa_consurf_7ckl.pdb #11/B GLN 29 C      my_msa_consurf_7ckl.pdb #11/B LEU 41 CD1     -0.130    3.620
    my_msa_consurf_7ckl.pdb #11/B CYS 31 SG     my_msa_consurf_7ckl.pdb #11/B LEU 49 CA      -0.138    3.788
    my_msa_consurf_7ckl.pdb #11/A PHE 698 CD2   my_msa_consurf_7ckl.pdb #11/A VAL 1391 CG1   -0.138    3.778
    my_msa_consurf_7ckl.pdb #11/A ALA 1185 CB   my_msa_consurf_7ckl.pdb #11/B PRO 28 CB      -0.139    3.899
    my_msa_consurf_7ckl.pdb #11/B LEU 57 CD1    my_msa_consurf_7ckl.pdb #11/B PRO 65 CG      -0.140    3.900
    my_msa_consurf_7ckl.pdb #11/B CYS 31 SG     my_msa_consurf_7ckl.pdb #11/B LEU 49 CD1     -0.143    3.793
    my_msa_consurf_7ckl.pdb #11/B LEU 41 CD1    my_msa_consurf_7ckl.pdb #11/B PHE 30 N       -0.146    3.666
    my_msa_consurf_7ckl.pdb #11/A MET 693 N     my_msa_consurf_7ckl.pdb #11/B SER 33 CA      -0.156    3.676
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CE     my_msa_consurf_7ckl.pdb #11/B HIS 47 CG      -0.173    3.663
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CB     my_msa_consurf_7ckl.pdb #11/B ILE 66 CD1     -0.174    3.934
    my_msa_consurf_7ckl.pdb #11/A TYR 649 CE1   my_msa_consurf_7ckl.pdb #11/A LYS 263 CB     -0.178    3.818
    my_msa_consurf_7ckl.pdb #11/A ILE 646 CG1   my_msa_consurf_7ckl.pdb #11/A PHE 698 CD1    -0.182    3.822
    my_msa_consurf_7ckl.pdb #11/B TRP 35 CD1    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CH2   -0.183    3.703
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CD     my_msa_consurf_7ckl.pdb #11/B HIS 47 CG      -0.187    3.677
    my_msa_consurf_7ckl.pdb #11/B CYS 50 CB     my_msa_consurf_7ckl.pdb #11/B LEU 41 CD2     -0.190    3.950
    my_msa_consurf_7ckl.pdb #11/A ASP 652 OD2   my_msa_consurf_7ckl.pdb #11/A ARG 1380 CD    -0.192    3.492
    my_msa_consurf_7ckl.pdb #11/B LEU 41 CD1    my_msa_consurf_7ckl.pdb #11/B TYR 48 CB      -0.194    3.954
    my_msa_consurf_7ckl.pdb #11/A TRP 1392 NE1  my_msa_consurf_7ckl.pdb #11/B LYS 32 CE      -0.196    3.716
    my_msa_consurf_7ckl.pdb #11/A LYS 263 CE    my_msa_consurf_7ckl.pdb #11/B PHE 36 CZ      -0.204    3.844
    my_msa_consurf_7ckl.pdb #11/A LEU 702 CD2   my_msa_consurf_7ckl.pdb #11/A LEU 1398 CD2   -0.213    3.973
    my_msa_consurf_7ckl.pdb #11/A ARG 697 NH1   my_msa_consurf_7ckl.pdb #11/A SER 692 N      -0.213    3.493
    my_msa_consurf_7ckl.pdb #11/A LYS 263 CB    my_msa_consurf_7ckl.pdb #11/A TYR 649 CZ     -0.215    3.705
    my_msa_consurf_7ckl.pdb #11/A PHE 698 CZ    my_msa_consurf_7ckl.pdb #11/A VAL 1382 CG2   -0.222    3.862
    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CH2  my_msa_consurf_7ckl.pdb #11/B LYS 32 CA      -0.225    3.865
    my_msa_consurf_7ckl.pdb #11/A LYS 263 CE    my_msa_consurf_7ckl.pdb #11/B PHE 36 CE2     -0.233    3.873
    my_msa_consurf_7ckl.pdb #11/A VAL 685 O     my_msa_consurf_7ckl.pdb #11/A ARG 697 CD     -0.238    3.538
    my_msa_consurf_7ckl.pdb #11/A MET 693 N     my_msa_consurf_7ckl.pdb #11/B SER 33 C       -0.243    3.493
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CB     my_msa_consurf_7ckl.pdb #11/B HIS 47 ND1     -0.243    3.763
    my_msa_consurf_7ckl.pdb #11/A PHE 1381 CE1  my_msa_consurf_7ckl.pdb #11/B TRP 35 CB      -0.243    3.883
    my_msa_consurf_7ckl.pdb #11/A TYR 649 OH    my_msa_consurf_7ckl.pdb #11/A LYS 263 CG     -0.251    3.591
    my_msa_consurf_7ckl.pdb #11/B CYS 50 CB     my_msa_consurf_7ckl.pdb #11/B CYS 31 SG      -0.254    3.904
    my_msa_consurf_7ckl.pdb #11/B SER 33 CA     my_msa_consurf_7ckl.pdb #11/A MET 693 CA     -0.259    4.019
    my_msa_consurf_7ckl.pdb #11/A ILE 646 CG1   my_msa_consurf_7ckl.pdb #11/A ILE 701 CB     -0.262    4.022
    my_msa_consurf_7ckl.pdb #11/A ALA 648 CA    my_msa_consurf_7ckl.pdb #11/A VAL 1377 CG2   -0.270    4.030
    my_msa_consurf_7ckl.pdb #11/A SER 651 CB    my_msa_consurf_7ckl.pdb #11/A GLY 1379 CA    -0.277    4.037
    my_msa_consurf_7ckl.pdb #11/B TRP 35 CE3    my_msa_consurf_7ckl.pdb #11/A MET 694 CG     -0.284    3.924
    my_msa_consurf_7ckl.pdb #11/B CYS 31 CB     my_msa_consurf_7ckl.pdb #11/B CYS 50 CB      -0.285    4.045
    my_msa_consurf_7ckl.pdb #11/A TYR 649 CZ    my_msa_consurf_7ckl.pdb #11/A LYS 263 CD     -0.288    3.778
    my_msa_consurf_7ckl.pdb #11/B SER 33 O      my_msa_consurf_7ckl.pdb #11/A MET 694 CB     -0.291    3.591
    my_msa_consurf_7ckl.pdb #11/A LYS 263 CA    my_msa_consurf_7ckl.pdb #11/A TYR 649 CE1    -0.291    3.931
    my_msa_consurf_7ckl.pdb #11/B TRP 35 NE1    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CH2   -0.300    3.700
    my_msa_consurf_7ckl.pdb #11/A THR 695 CG2   my_msa_consurf_7ckl.pdb #11/B TRP 35 CE2     -0.303    3.793
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CG     my_msa_consurf_7ckl.pdb #11/A TRP 1392 CH2   -0.305    3.945
    my_msa_consurf_7ckl.pdb #11/B CYS 31 SG     my_msa_consurf_7ckl.pdb #11/B CYS 50 SG      -0.310    3.450
    my_msa_consurf_7ckl.pdb #11/A HIS 1186 CD2  my_msa_consurf_7ckl.pdb #11/A ASN 1181 O     -0.310    3.490
    my_msa_consurf_7ckl.pdb #11/B ASN 38 CB     my_msa_consurf_7ckl.pdb #11/B PHE 30 CE1     -0.312    3.952
    my_msa_consurf_7ckl.pdb #11/B CYS 31 SG     my_msa_consurf_7ckl.pdb #11/B CYS 53 SG      -0.318    3.458
    my_msa_consurf_7ckl.pdb #11/B CYS 64 SG     my_msa_consurf_7ckl.pdb #11/B CYS 44 SG      -0.319    3.459
    my_msa_consurf_7ckl.pdb #11/A VAL 1182 CG1  my_msa_consurf_7ckl.pdb #11/A TRP 1392 CA    -0.329    4.089
    my_msa_consurf_7ckl.pdb #11/A ARG 1380 CA   my_msa_consurf_7ckl.pdb #11/A VAL 1187 CA    -0.329    4.089
    my_msa_consurf_7ckl.pdb #11/B TRP 35 CE3    my_msa_consurf_7ckl.pdb #11/A PHE 1381 CD1   -0.333    3.853
    my_msa_consurf_7ckl.pdb #11/B PHE 30 O      my_msa_consurf_7ckl.pdb #11/B TYR 48 CB      -0.340    3.640
    my_msa_consurf_7ckl.pdb #11/A VAL 261 CG2   my_msa_consurf_7ckl.pdb #11/A ASP 652 C      -0.342    3.832
    my_msa_consurf_7ckl.pdb #11/B CYS 50 CB     my_msa_consurf_7ckl.pdb #11/B GLU 37 CB      -0.346    4.106
    my_msa_consurf_7ckl.pdb #11/B PHE 30 CD1    my_msa_consurf_7ckl.pdb #11/B ASN 38 CB      -0.349    3.989
    my_msa_consurf_7ckl.pdb #11/A LEU 702 CD2   my_msa_consurf_7ckl.pdb #11/A VAL 1396 CG2   -0.350    4.110
    my_msa_consurf_7ckl.pdb #11/A TYR 649 CZ    my_msa_consurf_7ckl.pdb #11/A LYS 263 CG     -0.351    3.841
    my_msa_consurf_7ckl.pdb #11/A ARG 1380 CZ   my_msa_consurf_7ckl.pdb #11/B PHE 30 CZ      -0.353    3.723
    my_msa_consurf_7ckl.pdb #11/A MET 693 N     my_msa_consurf_7ckl.pdb #11/B SER 33 O       -0.358    3.018
    my_msa_consurf_7ckl.pdb #11/A ARG 697 NH1   my_msa_consurf_7ckl.pdb #11/A VAL 690 CG2    -0.358    3.878
    my_msa_consurf_7ckl.pdb #11/A VAL 261 CG2   my_msa_consurf_7ckl.pdb #11/A SER 651 C      -0.359    3.849
    my_msa_consurf_7ckl.pdb #11/B TRP 35 CE2    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CE3   -0.362    3.732
    my_msa_consurf_7ckl.pdb #11/A VAL 690 CB    my_msa_consurf_7ckl.pdb #11/A ARG 697 NH1    -0.364    3.884
    my_msa_consurf_7ckl.pdb #11/A ILE 646 CG1   my_msa_consurf_7ckl.pdb #11/A PHE 698 CE1    -0.366    4.006
    my_msa_consurf_7ckl.pdb #11/A VAL 1182 CG1  my_msa_consurf_7ckl.pdb #11/A PHE 1381 O     -0.369    3.669
    my_msa_consurf_7ckl.pdb #11/B PHE 30 CE1    my_msa_consurf_7ckl.pdb #11/B ASN 38 ND2     -0.375    3.775
    my_msa_consurf_7ckl.pdb #11/A PHE 1381 O    my_msa_consurf_7ckl.pdb #11/A VAL 1391 CA    -0.378    3.678
    my_msa_consurf_7ckl.pdb #11/B TRP 35 CZ2    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CE3   -0.378    3.898
    my_msa_consurf_7ckl.pdb #11/A VAL 261 CG2   my_msa_consurf_7ckl.pdb #11/A ASP 652 O      -0.387    3.687
    my_msa_consurf_7ckl.pdb #11/A MET 693 SD    my_msa_consurf_7ckl.pdb #11/A CYS 606 CA     -0.388    4.038
    my_msa_consurf_7ckl.pdb #11/A GLU 608 CG    my_msa_consurf_7ckl.pdb #11/B LEU 56 CD2     -0.392    4.152
    my_msa_consurf_7ckl.pdb #11/A VAL 685 O     my_msa_consurf_7ckl.pdb #11/A VAL 690 CG1    -0.399    3.699
    

  
149 contacts  

> contacts sel intraRes true ignoreHiddenModels true select true color #fffb00
> reveal true log true
    
    
    Allowed overlap: -0.4
    H-bond overlap reduction: 0.4
    Ignore contacts between atoms separated by 4 bonds or less
    Detect intra-residue contacts: True
    Detect intra-molecule contacts: True
    
    232 contacts
                      atom1                                       atom2                     overlap  distance
    my_msa_consurf_7ckl.pdb #11/B PHE 36 CZ     my_msa_consurf_7ckl.pdb #11/A LYS 263 NZ     0.802    2.598
    my_msa_consurf_7ckl.pdb #11/B PHE 36 CE2    my_msa_consurf_7ckl.pdb #11/A LYS 263 NZ     0.709    2.691
    my_msa_consurf_7ckl.pdb #11/B TRP 35 NE1    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CZ3   0.691    2.709
    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CZ3  my_msa_consurf_7ckl.pdb #11/B TRP 35 CD1     0.394    3.126
    my_msa_consurf_7ckl.pdb #11/A ARG 697 NH1   my_msa_consurf_7ckl.pdb #11/A SER 692 O      0.373    2.287
    my_msa_consurf_7ckl.pdb #11/A SER 651 CB    my_msa_consurf_7ckl.pdb #11/A VAL 1377 CG1   0.352    3.408
    my_msa_consurf_7ckl.pdb #11/B CYS 53 SG     my_msa_consurf_7ckl.pdb #11/B SER 33 OG      0.341    2.489
    my_msa_consurf_7ckl.pdb #11/B HIS 47 ND1    my_msa_consurf_7ckl.pdb #11/B LYS 32 CD      0.304    3.216
    my_msa_consurf_7ckl.pdb #11/B HIS 47 CE1    my_msa_consurf_7ckl.pdb #11/B LEU 49 CD2     0.295    3.345
    my_msa_consurf_7ckl.pdb #11/B HIS 47 ND1    my_msa_consurf_7ckl.pdb #11/B TYR 48 N       0.243    3.037
    my_msa_consurf_7ckl.pdb #11/B CYS 53 CB     my_msa_consurf_7ckl.pdb #11/B CYS 50 SG      0.233    3.417
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CG     my_msa_consurf_7ckl.pdb #11/B HIS 47 ND1     0.233    3.287
    my_msa_consurf_7ckl.pdb #11/B PHE 30 CZ     my_msa_consurf_7ckl.pdb #11/A ARG 1380 NH2   0.224    3.176
    my_msa_consurf_7ckl.pdb #11/A HIS 1186 CD2  my_msa_consurf_7ckl.pdb #11/A MET 1184 CB    0.216    3.424
    my_msa_consurf_7ckl.pdb #11/A VAL 690 CG2   my_msa_consurf_7ckl.pdb #11/A ARG 697 NH2    0.206    3.314
    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CZ2  my_msa_consurf_7ckl.pdb #11/B LYS 32 CG      0.192    3.448
    my_msa_consurf_7ckl.pdb #11/B HIS 47 CE1    my_msa_consurf_7ckl.pdb #11/B TYR 48 O       0.187    2.993
    my_msa_consurf_7ckl.pdb #11/A VAL 261 CG2   my_msa_consurf_7ckl.pdb #11/A SER 651 O      0.186    3.114
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CE     my_msa_consurf_7ckl.pdb #11/B HIS 47 CB      0.174    3.586
    my_msa_consurf_7ckl.pdb #11/A SER 692 O     my_msa_consurf_7ckl.pdb #11/A MET 693 CG     0.151    3.149
    my_msa_consurf_7ckl.pdb #11/A LEU 1398 CD2  my_msa_consurf_7ckl.pdb #11/A TYR 706 CD2    0.147    3.493
    my_msa_consurf_7ckl.pdb #11/B SER 33 CB     my_msa_consurf_7ckl.pdb #11/B CYS 53 SG      0.144    3.506
    my_msa_consurf_7ckl.pdb #11/A THR 695 CG2   my_msa_consurf_7ckl.pdb #11/B TRP 35 CZ2     0.140    3.500
    my_msa_consurf_7ckl.pdb #11/A VAL 650 CG2   my_msa_consurf_7ckl.pdb #11/B TRP 35 CE3     0.134    3.506
    my_msa_consurf_7ckl.pdb #11/A PHE 1381 CE1  my_msa_consurf_7ckl.pdb #11/B TRP 35 O       0.134    3.046
    my_msa_consurf_7ckl.pdb #11/A VAL 1396 CG2  my_msa_consurf_7ckl.pdb #11/A PHE 1389 CB    0.128    3.632
    my_msa_consurf_7ckl.pdb #11/A MET 693 SD    my_msa_consurf_7ckl.pdb #11/A ASN 696 ND2    0.125    2.885
    my_msa_consurf_7ckl.pdb #11/B CYS 53 CB     my_msa_consurf_7ckl.pdb #11/B SER 33 OG      0.123    3.217
    my_msa_consurf_7ckl.pdb #11/A LYS 263 NZ    my_msa_consurf_7ckl.pdb #11/B PHE 36 CE1     0.105    3.295
    my_msa_consurf_7ckl.pdb #11/A VAL 1396 CG2  my_msa_consurf_7ckl.pdb #11/A LEU 1398 CD2   0.104    3.656
    my_msa_consurf_7ckl.pdb #11/A VAL 1382 CG1  my_msa_consurf_7ckl.pdb #11/A MET 647 CE     0.102    3.658
    my_msa_consurf_7ckl.pdb #11/A LYS 263 CB    my_msa_consurf_7ckl.pdb #11/A TYR 649 OH     0.101    3.239
    my_msa_consurf_7ckl.pdb #11/B PHE 36 CD2    my_msa_consurf_7ckl.pdb #11/B CYS 34 O       0.101    3.079
    my_msa_consurf_7ckl.pdb #11/A ASP 605 OD1   my_msa_consurf_7ckl.pdb #11/B VAL 60 CG1     0.099    3.201
    my_msa_consurf_7ckl.pdb #11/A VAL 1377 CG2  my_msa_consurf_7ckl.pdb #11/A SER 1376 O     0.098    3.202
    my_msa_consurf_7ckl.pdb #11/A VAL 690 CG1   my_msa_consurf_7ckl.pdb #11/A SER 687 OG     0.095    3.245
    my_msa_consurf_7ckl.pdb #11/A VAL 1391 CG1  my_msa_consurf_7ckl.pdb #11/A PHE 698 CE2    0.088    3.552
    my_msa_consurf_7ckl.pdb #11/A VAL 650 CG2   my_msa_consurf_7ckl.pdb #11/B TRP 35 CZ3     0.075    3.565
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CB     my_msa_consurf_7ckl.pdb #11/B HIS 47 CE1     0.074    3.566
    my_msa_consurf_7ckl.pdb #11/B VAL 60 CG2    my_msa_consurf_7ckl.pdb #11/A ASN 607 ND2    0.071    3.449
    my_msa_consurf_7ckl.pdb #11/A ASN 1181 OD1  my_msa_consurf_7ckl.pdb #11/A HIS 1186 CB    0.069    3.231
    my_msa_consurf_7ckl.pdb #11/A HIS 1186 CD2  my_msa_consurf_7ckl.pdb #11/A ASN 1181 OD1   0.067    3.113
    my_msa_consurf_7ckl.pdb #11/B GLN 29 C      my_msa_consurf_7ckl.pdb #11/B PHE 30 CD2     0.063    3.307
    my_msa_consurf_7ckl.pdb #11/B HIS 47 CE1    my_msa_consurf_7ckl.pdb #11/B LYS 32 CD      0.061    3.579
    my_msa_consurf_7ckl.pdb #11/B CYS 50 CB     my_msa_consurf_7ckl.pdb #11/B GLU 37 CG      0.058    3.702
    my_msa_consurf_7ckl.pdb #11/A LEU 1398 CD2  my_msa_consurf_7ckl.pdb #11/A TYR 706 CE2    0.058    3.582
    my_msa_consurf_7ckl.pdb #11/A MET 647 CE    my_msa_consurf_7ckl.pdb #11/A GLU 1384 CB    0.054    3.706
    my_msa_consurf_7ckl.pdb #11/B TRP 35 NE1    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CE3   0.054    3.346
    my_msa_consurf_7ckl.pdb #11/A TYR 649 OH    my_msa_consurf_7ckl.pdb #11/A LYS 263 CD     0.053    3.287
    my_msa_consurf_7ckl.pdb #11/A VAL 690 CG2   my_msa_consurf_7ckl.pdb #11/A SER 687 O      0.052    3.248
    my_msa_consurf_7ckl.pdb #11/A ASP 605 O     my_msa_consurf_7ckl.pdb #11/A MET 693 SD     0.048    3.142
    my_msa_consurf_7ckl.pdb #11/A MET 647 SD    my_msa_consurf_7ckl.pdb #11/A VAL 1382 CG2   0.043    3.607
    my_msa_consurf_7ckl.pdb #11/A ASP 652 C     my_msa_consurf_7ckl.pdb #11/A TYR 653 CD2    0.041    3.329
    my_msa_consurf_7ckl.pdb #11/A ILE 646 CG1   my_msa_consurf_7ckl.pdb #11/A ILE 701 CG2    0.040    3.720
    my_msa_consurf_7ckl.pdb #11/A VAL 1396 CG2  my_msa_consurf_7ckl.pdb #11/A LEU 1398 CG    0.037    3.723
    my_msa_consurf_7ckl.pdb #11/B TRP 35 O      my_msa_consurf_7ckl.pdb #11/A PHE 1381 CZ    0.034    3.146
    my_msa_consurf_7ckl.pdb #11/B CYS 31 SG     my_msa_consurf_7ckl.pdb #11/B SER 33 OG      0.027    2.803
    my_msa_consurf_7ckl.pdb #11/A PHE 1381 O    my_msa_consurf_7ckl.pdb #11/A VAL 1391 O     0.023    2.817
    my_msa_consurf_7ckl.pdb #11/B TRP 35 CE2    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CZ3   0.022    3.348
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CG     my_msa_consurf_7ckl.pdb #11/B HIS 47 CE1     0.016    3.624
    my_msa_consurf_7ckl.pdb #11/B CYS 31 SG     my_msa_consurf_7ckl.pdb #11/B CYS 53 CB      0.012    3.638
    my_msa_consurf_7ckl.pdb #11/A VAL 1391 CG1  my_msa_consurf_7ckl.pdb #11/A VAL 1396 CG1   0.010    3.750
    my_msa_consurf_7ckl.pdb #11/A ASP 605 O     my_msa_consurf_7ckl.pdb #11/A ASP 605 OD1    0.007    2.833
    my_msa_consurf_7ckl.pdb #11/B LEU 71 CD2    my_msa_consurf_7ckl.pdb #11/B CYS 64 SG      0.001    3.649
    my_msa_consurf_7ckl.pdb #11/A SER 692 OG    my_msa_consurf_7ckl.pdb #11/B LEU 57 CD2     -0.004    3.344
    my_msa_consurf_7ckl.pdb #11/A VAL 261 CG2   my_msa_consurf_7ckl.pdb #11/A ASP 652 CA     -0.009    3.769
    my_msa_consurf_7ckl.pdb #11/A ARG 697 NH2   my_msa_consurf_7ckl.pdb #11/A MET 694 SD     -0.010    3.020
    my_msa_consurf_7ckl.pdb #11/A VAL 1382 CG2  my_msa_consurf_7ckl.pdb #11/A MET 647 CE     -0.010    3.770
    my_msa_consurf_7ckl.pdb #11/A ASN 607 CB    my_msa_consurf_7ckl.pdb #11/B VAL 60 CG2     -0.015    3.775
    my_msa_consurf_7ckl.pdb #11/A ASN 607 ND2   my_msa_consurf_7ckl.pdb #11/B LEU 56 O       -0.018    2.678
    my_msa_consurf_7ckl.pdb #11/B ZN 102 ZN     my_msa_consurf_7ckl.pdb #11/B CYS 67 SG      -0.019    2.389
    my_msa_consurf_7ckl.pdb #11/B LEU 71 CD2    my_msa_consurf_7ckl.pdb #11/B CYS 64 CB      -0.019    3.779
    my_msa_consurf_7ckl.pdb #11/B CYS 31 SG     my_msa_consurf_7ckl.pdb #11/B ZN 101 ZN      -0.020    2.390
    my_msa_consurf_7ckl.pdb #11/B CYS 44 SG     my_msa_consurf_7ckl.pdb #11/B ZN 102 ZN      -0.020    2.390
    my_msa_consurf_7ckl.pdb #11/B ZN 101 ZN     my_msa_consurf_7ckl.pdb #11/B CYS 50 SG      -0.021    2.391
    my_msa_consurf_7ckl.pdb #11/B ZN 101 ZN     my_msa_consurf_7ckl.pdb #11/B CYS 53 SG      -0.022    2.392
    my_msa_consurf_7ckl.pdb #11/B CYS 64 SG     my_msa_consurf_7ckl.pdb #11/B ZN 102 ZN      -0.023    2.393
    my_msa_consurf_7ckl.pdb #11/A ASP 652 O     my_msa_consurf_7ckl.pdb #11/A TYR 653 CD2    -0.027    3.207
    my_msa_consurf_7ckl.pdb #11/B CYS 34 SG     my_msa_consurf_7ckl.pdb #11/B ZN 101 ZN      -0.029    2.399
    my_msa_consurf_7ckl.pdb #11/A VAL 690 CG2   my_msa_consurf_7ckl.pdb #11/A ARG 697 CZ     -0.038    3.528
    my_msa_consurf_7ckl.pdb #11/A LYS 263 NZ    my_msa_consurf_7ckl.pdb #11/B PHE 36 CD2     -0.039    3.439
    my_msa_consurf_7ckl.pdb #11/B VAL 60 CG2    my_msa_consurf_7ckl.pdb #11/A ASN 607 CG     -0.040    3.530
    my_msa_consurf_7ckl.pdb #11/A LEU 609 CD2   my_msa_consurf_7ckl.pdb #11/A LEU 684 O      -0.041    3.341
    my_msa_consurf_7ckl.pdb #11/B SER 33 O      my_msa_consurf_7ckl.pdb #11/A MET 693 CA     -0.050    3.350
    my_msa_consurf_7ckl.pdb #11/B ZN 102 ZN     my_msa_consurf_7ckl.pdb #11/B HIS 47 NE2     -0.056    2.296
    my_msa_consurf_7ckl.pdb #11/A THR 695 CG2   my_msa_consurf_7ckl.pdb #11/B TRP 35 NE1     -0.059    3.579
    my_msa_consurf_7ckl.pdb #11/B LEU 56 CD2    my_msa_consurf_7ckl.pdb #11/A SER 692 CB     -0.060    3.820
    my_msa_consurf_7ckl.pdb #11/B LEU 57 CD2    my_msa_consurf_7ckl.pdb #11/B CYS 53 O       -0.061    3.361
    my_msa_consurf_7ckl.pdb #11/A ARG 697 NH1   my_msa_consurf_7ckl.pdb #11/A SER 692 C      -0.066    3.316
    my_msa_consurf_7ckl.pdb #11/A ARG 1380 NH2  my_msa_consurf_7ckl.pdb #11/B PHE 30 CE2     -0.066    3.466
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CE     my_msa_consurf_7ckl.pdb #11/B HIS 47 ND1     -0.076    3.596
    my_msa_consurf_7ckl.pdb #11/B PHE 36 CD2    my_msa_consurf_7ckl.pdb #11/B TRP 35 C       -0.078    3.448
    my_msa_consurf_7ckl.pdb #11/A ASP 605 O     my_msa_consurf_7ckl.pdb #11/A MET 693 CE     -0.079    3.379
    my_msa_consurf_7ckl.pdb #11/A VAL 1382 CG1  my_msa_consurf_7ckl.pdb #11/A VAL 650 CG1    -0.079    3.839
    my_msa_consurf_7ckl.pdb #11/A ASP 652 C     my_msa_consurf_7ckl.pdb #11/A VAL 261 CG1    -0.079    3.569
    my_msa_consurf_7ckl.pdb #11/A ASP 605 CG    my_msa_consurf_7ckl.pdb #11/B VAL 60 CG1     -0.081    3.841
    my_msa_consurf_7ckl.pdb #11/A SER 651 C     my_msa_consurf_7ckl.pdb #11/A ASP 652 OD1    -0.083    3.113
    my_msa_consurf_7ckl.pdb #11/A MET 693 N     my_msa_consurf_7ckl.pdb #11/B SER 33 CB      -0.083    3.603
    my_msa_consurf_7ckl.pdb #11/A ALA 1185 CB   my_msa_consurf_7ckl.pdb #11/B PRO 28 CG      -0.083    3.843
    my_msa_consurf_7ckl.pdb #11/B SER 33 O      my_msa_consurf_7ckl.pdb #11/A MET 694 N      -0.089    2.749
    my_msa_consurf_7ckl.pdb #11/B LEU 41 CD1    my_msa_consurf_7ckl.pdb #11/B PHE 30 CA      -0.096    3.856
    my_msa_consurf_7ckl.pdb #11/B HIS 47 CB     my_msa_consurf_7ckl.pdb #11/B LYS 32 NZ      -0.096    3.616
    my_msa_consurf_7ckl.pdb #11/B LEU 41 CD2    my_msa_consurf_7ckl.pdb #11/B CYS 50 CA      -0.098    3.858
    my_msa_consurf_7ckl.pdb #11/A MET 647 SD    my_msa_consurf_7ckl.pdb #11/A VAL 1382 CG1   -0.101    3.751
    my_msa_consurf_7ckl.pdb #11/A VAL 1377 CG2  my_msa_consurf_7ckl.pdb #11/A LYS 1375 O     -0.102    3.402
    my_msa_consurf_7ckl.pdb #11/A HIS 1186 O    my_msa_consurf_7ckl.pdb #11/A ARG 1380 CA    -0.102    3.402
    my_msa_consurf_7ckl.pdb #11/A VAL 1182 CG1  my_msa_consurf_7ckl.pdb #11/A GLY 1393 N     -0.107    3.627
    my_msa_consurf_7ckl.pdb #11/A LYS 263 CE    my_msa_consurf_7ckl.pdb #11/A TYR 649 CE2    -0.109    3.749
    my_msa_consurf_7ckl.pdb #11/B TYR 48 CB     my_msa_consurf_7ckl.pdb #11/B LEU 41 CB      -0.110    3.870
    my_msa_consurf_7ckl.pdb #11/A ASN 1181 OD1  my_msa_consurf_7ckl.pdb #11/A HIS 1186 CG    -0.119    3.149
    my_msa_consurf_7ckl.pdb #11/A LEU 1398 CD2  my_msa_consurf_7ckl.pdb #11/A LEU 702 CG     -0.119    3.879
    my_msa_consurf_7ckl.pdb #11/B CYS 50 N      my_msa_consurf_7ckl.pdb #11/B CYS 31 SG      -0.123    3.133
    my_msa_consurf_7ckl.pdb #11/A SER 651 O     my_msa_consurf_7ckl.pdb #11/A ASP 652 OD1    -0.124    2.964
    my_msa_consurf_7ckl.pdb #11/B CYS 31 CB     my_msa_consurf_7ckl.pdb #11/B CYS 50 N       -0.127    3.647
    my_msa_consurf_7ckl.pdb #11/A ARG 697 CD    my_msa_consurf_7ckl.pdb #11/A VAL 685 CG1    -0.127    3.887
    my_msa_consurf_7ckl.pdb #11/B GLN 29 C      my_msa_consurf_7ckl.pdb #11/B LEU 41 CD1     -0.130    3.620
    my_msa_consurf_7ckl.pdb #11/B CYS 34 SG     my_msa_consurf_7ckl.pdb #11/B GLU 37 CB      -0.134    3.784
    my_msa_consurf_7ckl.pdb #11/B CYS 31 SG     my_msa_consurf_7ckl.pdb #11/B LEU 49 CA      -0.138    3.788
    my_msa_consurf_7ckl.pdb #11/A PHE 698 CD2   my_msa_consurf_7ckl.pdb #11/A VAL 1391 CG1   -0.138    3.778
    my_msa_consurf_7ckl.pdb #11/A ALA 1185 CB   my_msa_consurf_7ckl.pdb #11/B PRO 28 CB      -0.139    3.899
    my_msa_consurf_7ckl.pdb #11/A MET 693 CE    my_msa_consurf_7ckl.pdb #11/A ASN 696 ND2    -0.140    3.660
    my_msa_consurf_7ckl.pdb #11/B LEU 57 CD1    my_msa_consurf_7ckl.pdb #11/B PRO 65 CG      -0.140    3.900
    my_msa_consurf_7ckl.pdb #11/B CYS 31 SG     my_msa_consurf_7ckl.pdb #11/B LEU 49 CD1     -0.143    3.793
    my_msa_consurf_7ckl.pdb #11/B ZN 102 ZN     my_msa_consurf_7ckl.pdb #11/B HIS 47 CD2     -0.145    2.505
    my_msa_consurf_7ckl.pdb #11/B LEU 41 CD1    my_msa_consurf_7ckl.pdb #11/B PHE 30 N       -0.146    3.666
    my_msa_consurf_7ckl.pdb #11/B HIS 47 ND1    my_msa_consurf_7ckl.pdb #11/B TYR 48 O       -0.150    2.810
    my_msa_consurf_7ckl.pdb #11/A VAL 690 CG1   my_msa_consurf_7ckl.pdb #11/A ASP 689 O      -0.155    3.455
    my_msa_consurf_7ckl.pdb #11/A MET 693 N     my_msa_consurf_7ckl.pdb #11/B SER 33 CA      -0.156    3.676
    my_msa_consurf_7ckl.pdb #11/A MET 647 SD    my_msa_consurf_7ckl.pdb #11/A MET 647 O      -0.164    3.354
    my_msa_consurf_7ckl.pdb #11/A VAL 1377 CG2  my_msa_consurf_7ckl.pdb #11/A ALA 648 CB     -0.165    3.925
    my_msa_consurf_7ckl.pdb #11/A LEU 609 CD2   my_msa_consurf_7ckl.pdb #11/A GLU 608 C      -0.171    3.661
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CE     my_msa_consurf_7ckl.pdb #11/B HIS 47 CG      -0.173    3.663
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CB     my_msa_consurf_7ckl.pdb #11/B ILE 66 CD1     -0.174    3.934
    my_msa_consurf_7ckl.pdb #11/A ASN 1181 O    my_msa_consurf_7ckl.pdb #11/A HIS 1186 CB    -0.176    3.476
    my_msa_consurf_7ckl.pdb #11/B LEU 49 CD1    my_msa_consurf_7ckl.pdb #11/B HIS 47 CE1     -0.176    3.816
    my_msa_consurf_7ckl.pdb #11/A TYR 649 CE1   my_msa_consurf_7ckl.pdb #11/A LYS 263 CB     -0.178    3.818
    my_msa_consurf_7ckl.pdb #11/A ILE 646 CG1   my_msa_consurf_7ckl.pdb #11/A PHE 698 CD1    -0.182    3.822
    my_msa_consurf_7ckl.pdb #11/B TRP 35 CD1    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CH2   -0.183    3.703
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CD     my_msa_consurf_7ckl.pdb #11/B HIS 47 CG      -0.187    3.677
    my_msa_consurf_7ckl.pdb #11/B LEU 56 O      my_msa_consurf_7ckl.pdb #11/B LEU 56 CD1     -0.189    3.489
    my_msa_consurf_7ckl.pdb #11/B CYS 50 CB     my_msa_consurf_7ckl.pdb #11/B LEU 41 CD2     -0.190    3.950
    my_msa_consurf_7ckl.pdb #11/A ASP 652 OD2   my_msa_consurf_7ckl.pdb #11/A ARG 1380 CD    -0.192    3.492
    my_msa_consurf_7ckl.pdb #11/B LEU 41 CD1    my_msa_consurf_7ckl.pdb #11/B TYR 48 CB      -0.194    3.954
    my_msa_consurf_7ckl.pdb #11/A TRP 1392 NE1  my_msa_consurf_7ckl.pdb #11/B LYS 32 CE      -0.196    3.716
    my_msa_consurf_7ckl.pdb #11/A ILE 701 CG2   my_msa_consurf_7ckl.pdb #11/A ILE 646 CB     -0.196    3.956
    my_msa_consurf_7ckl.pdb #11/A PHE 698 CD1   my_msa_consurf_7ckl.pdb #11/A PHE 698 O      -0.201    3.381
    my_msa_consurf_7ckl.pdb #11/A LYS 263 CE    my_msa_consurf_7ckl.pdb #11/B PHE 36 CZ      -0.204    3.844
    my_msa_consurf_7ckl.pdb #11/A ALA 648 CA    my_msa_consurf_7ckl.pdb #11/A PHE 645 O      -0.206    3.506
    my_msa_consurf_7ckl.pdb #11/A LEU 702 CD2   my_msa_consurf_7ckl.pdb #11/A LEU 1398 CD2   -0.213    3.973
    my_msa_consurf_7ckl.pdb #11/A ARG 697 NH1   my_msa_consurf_7ckl.pdb #11/A SER 692 N      -0.213    3.493
    my_msa_consurf_7ckl.pdb #11/A LYS 263 CB    my_msa_consurf_7ckl.pdb #11/A TYR 649 CZ     -0.215    3.705
    my_msa_consurf_7ckl.pdb #11/B PRO 28 CB     my_msa_consurf_7ckl.pdb #11/B PHE 30 CD2     -0.217    3.857
    my_msa_consurf_7ckl.pdb #11/B CYS 44 SG     my_msa_consurf_7ckl.pdb #11/B LEU 71 CD2     -0.220    3.870
    my_msa_consurf_7ckl.pdb #11/A VAL 1382 CG2  my_msa_consurf_7ckl.pdb #11/A PHE 698 CZ     -0.222    3.862
    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CH2  my_msa_consurf_7ckl.pdb #11/B LYS 32 CA      -0.225    3.865
    my_msa_consurf_7ckl.pdb #11/A ASP 652 O     my_msa_consurf_7ckl.pdb #11/A TYR 653 CG     -0.232    3.262
    my_msa_consurf_7ckl.pdb #11/A LYS 263 CE    my_msa_consurf_7ckl.pdb #11/B PHE 36 CE2     -0.233    3.873
    my_msa_consurf_7ckl.pdb #11/A VAL 685 O     my_msa_consurf_7ckl.pdb #11/A ARG 697 CD     -0.238    3.538
    my_msa_consurf_7ckl.pdb #11/A MET 693 N     my_msa_consurf_7ckl.pdb #11/B SER 33 C       -0.243    3.493
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CB     my_msa_consurf_7ckl.pdb #11/B HIS 47 ND1     -0.243    3.763
    my_msa_consurf_7ckl.pdb #11/A PHE 1381 CE1  my_msa_consurf_7ckl.pdb #11/B TRP 35 CB      -0.243    3.883
    my_msa_consurf_7ckl.pdb #11/B PHE 36 CD2    my_msa_consurf_7ckl.pdb #11/B TRP 35 CB      -0.246    3.886
    my_msa_consurf_7ckl.pdb #11/A TYR 649 OH    my_msa_consurf_7ckl.pdb #11/A LYS 263 CG     -0.251    3.591
    my_msa_consurf_7ckl.pdb #11/B CYS 50 CB     my_msa_consurf_7ckl.pdb #11/B CYS 31 SG      -0.254    3.904
    my_msa_consurf_7ckl.pdb #11/A LEU 609 CD2   my_msa_consurf_7ckl.pdb #11/A GLU 608 O      -0.254    3.554
    my_msa_consurf_7ckl.pdb #11/B CYS 50 SG     my_msa_consurf_7ckl.pdb #11/B CYS 53 N       -0.256    3.266
    my_msa_consurf_7ckl.pdb #11/B SER 33 CA     my_msa_consurf_7ckl.pdb #11/A MET 693 CA     -0.259    4.019
    my_msa_consurf_7ckl.pdb #11/B CYS 53 SG     my_msa_consurf_7ckl.pdb #11/B CYS 50 SG      -0.259    3.399
    my_msa_consurf_7ckl.pdb #11/A SER 692 CB    my_msa_consurf_7ckl.pdb #11/A VAL 690 O      -0.259    3.559
    my_msa_consurf_7ckl.pdb #11/A ILE 646 CG1   my_msa_consurf_7ckl.pdb #11/A ILE 701 CB     -0.262    4.022
    my_msa_consurf_7ckl.pdb #11/A SER 692 O     my_msa_consurf_7ckl.pdb #11/A MET 693 O      -0.265    3.105
    my_msa_consurf_7ckl.pdb #11/A ALA 648 CA    my_msa_consurf_7ckl.pdb #11/A VAL 1377 CG2   -0.270    4.030
    my_msa_consurf_7ckl.pdb #11/A SER 651 CB    my_msa_consurf_7ckl.pdb #11/A GLY 1379 CA    -0.277    4.037
    my_msa_consurf_7ckl.pdb #11/A ALA 648 CA    my_msa_consurf_7ckl.pdb #11/A SER 651 OG     -0.277    3.617
    my_msa_consurf_7ckl.pdb #11/B TRP 35 CE3    my_msa_consurf_7ckl.pdb #11/A MET 694 CG     -0.284    3.924
    my_msa_consurf_7ckl.pdb #11/B CYS 31 CB     my_msa_consurf_7ckl.pdb #11/B CYS 50 CB      -0.285    4.045
    my_msa_consurf_7ckl.pdb #11/B CYS 64 SG     my_msa_consurf_7ckl.pdb #11/B CYS 67 SG      -0.286    3.426
    my_msa_consurf_7ckl.pdb #11/A TYR 649 CZ    my_msa_consurf_7ckl.pdb #11/A LYS 263 CD     -0.288    3.778
    my_msa_consurf_7ckl.pdb #11/B SER 33 O      my_msa_consurf_7ckl.pdb #11/A MET 694 CB     -0.291    3.591
    my_msa_consurf_7ckl.pdb #11/A LYS 263 CA    my_msa_consurf_7ckl.pdb #11/A TYR 649 CE1    -0.291    3.931
    my_msa_consurf_7ckl.pdb #11/B TRP 35 NE1    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CH2   -0.300    3.700
    my_msa_consurf_7ckl.pdb #11/A PHE 698 CZ    my_msa_consurf_7ckl.pdb #11/A LEU 702 CD2    -0.301    3.941
    my_msa_consurf_7ckl.pdb #11/A THR 695 CG2   my_msa_consurf_7ckl.pdb #11/B TRP 35 CE2     -0.303    3.793
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CG     my_msa_consurf_7ckl.pdb #11/A TRP 1392 CH2   -0.305    3.945
    my_msa_consurf_7ckl.pdb #11/B CYS 50 SG     my_msa_consurf_7ckl.pdb #11/B CYS 53 CA      -0.309    3.959
    my_msa_consurf_7ckl.pdb #11/B CYS 31 SG     my_msa_consurf_7ckl.pdb #11/B CYS 50 SG      -0.310    3.450
    my_msa_consurf_7ckl.pdb #11/A ASN 1181 O    my_msa_consurf_7ckl.pdb #11/A HIS 1186 CD2   -0.310    3.490
    my_msa_consurf_7ckl.pdb #11/B LEU 41 CD2    my_msa_consurf_7ckl.pdb #11/B GLY 40 C       -0.311    3.801
    my_msa_consurf_7ckl.pdb #11/B CYS 44 SG     my_msa_consurf_7ckl.pdb #11/B CYS 67 SG      -0.311    3.451
    my_msa_consurf_7ckl.pdb #11/B ASN 38 CB     my_msa_consurf_7ckl.pdb #11/B PHE 30 CE1     -0.312    3.952
    my_msa_consurf_7ckl.pdb #11/B CYS 31 SG     my_msa_consurf_7ckl.pdb #11/B CYS 53 SG      -0.318    3.458
    my_msa_consurf_7ckl.pdb #11/B CYS 44 SG     my_msa_consurf_7ckl.pdb #11/B CYS 64 SG      -0.319    3.459
    my_msa_consurf_7ckl.pdb #11/A VAL 1182 CG1  my_msa_consurf_7ckl.pdb #11/A TRP 1392 CA    -0.329    4.089
    my_msa_consurf_7ckl.pdb #11/A ARG 1380 CA   my_msa_consurf_7ckl.pdb #11/A VAL 1187 CA    -0.329    4.089
    my_msa_consurf_7ckl.pdb #11/B TRP 35 CE3    my_msa_consurf_7ckl.pdb #11/A PHE 1381 CD1   -0.333    3.853
    my_msa_consurf_7ckl.pdb #11/B PHE 30 O      my_msa_consurf_7ckl.pdb #11/B TYR 48 CB      -0.340    3.640
    my_msa_consurf_7ckl.pdb #11/A VAL 261 CG2   my_msa_consurf_7ckl.pdb #11/A ASP 652 C      -0.342    3.832
    my_msa_consurf_7ckl.pdb #11/A SER 651 O     my_msa_consurf_7ckl.pdb #11/A VAL 650 O      -0.342    3.182
    my_msa_consurf_7ckl.pdb #11/B CYS 64 SG     my_msa_consurf_7ckl.pdb #11/B CYS 67 CB      -0.345    3.995
    my_msa_consurf_7ckl.pdb #11/A ILE 701 CB    my_msa_consurf_7ckl.pdb #11/A ARG 697 O      -0.345    3.645
    my_msa_consurf_7ckl.pdb #11/B CYS 50 CB     my_msa_consurf_7ckl.pdb #11/B GLU 37 CB      -0.346    4.106
    my_msa_consurf_7ckl.pdb #11/B PHE 30 CD1    my_msa_consurf_7ckl.pdb #11/B ASN 38 CB      -0.349    3.989
    my_msa_consurf_7ckl.pdb #11/B CYS 64 SG     my_msa_consurf_7ckl.pdb #11/B PRO 65 CD      -0.349    3.999
    my_msa_consurf_7ckl.pdb #11/A LEU 702 CD2   my_msa_consurf_7ckl.pdb #11/A VAL 1396 CG2   -0.350    4.110
    my_msa_consurf_7ckl.pdb #11/A TYR 649 CZ    my_msa_consurf_7ckl.pdb #11/A LYS 263 CG     -0.351    3.841
    my_msa_consurf_7ckl.pdb #11/A ARG 1380 CZ   my_msa_consurf_7ckl.pdb #11/B PHE 30 CZ      -0.353    3.723
    my_msa_consurf_7ckl.pdb #11/A GLU 608 CG    my_msa_consurf_7ckl.pdb #11/A ASN 607 O      -0.353    3.653
    my_msa_consurf_7ckl.pdb #11/B CYS 44 SG     my_msa_consurf_7ckl.pdb #11/B HIS 47 CD2     -0.358    3.888
    my_msa_consurf_7ckl.pdb #11/A MET 693 N     my_msa_consurf_7ckl.pdb #11/B SER 33 O       -0.358    3.018
    my_msa_consurf_7ckl.pdb #11/A ARG 697 NH1   my_msa_consurf_7ckl.pdb #11/A VAL 690 CG2    -0.358    3.878
    my_msa_consurf_7ckl.pdb #11/A VAL 261 CG2   my_msa_consurf_7ckl.pdb #11/A SER 651 C      -0.359    3.849
    my_msa_consurf_7ckl.pdb #11/B LEU 57 CD2    my_msa_consurf_7ckl.pdb #11/B LEU 56 C       -0.361    3.851
    my_msa_consurf_7ckl.pdb #11/A SER 692 N     my_msa_consurf_7ckl.pdb #11/A VAL 690 O      -0.361    3.021
    my_msa_consurf_7ckl.pdb #11/B TRP 35 CE2    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CE3   -0.362    3.732
    my_msa_consurf_7ckl.pdb #11/A VAL 690 CB    my_msa_consurf_7ckl.pdb #11/A ARG 697 NH1    -0.364    3.884
    my_msa_consurf_7ckl.pdb #11/A ILE 646 CG1   my_msa_consurf_7ckl.pdb #11/A PHE 698 CE1    -0.366    4.006
    my_msa_consurf_7ckl.pdb #11/A VAL 1377 CG1  my_msa_consurf_7ckl.pdb #11/A ILE 1378 CA    -0.366    4.126
    my_msa_consurf_7ckl.pdb #11/A VAL 1182 CG1  my_msa_consurf_7ckl.pdb #11/A PHE 1381 O     -0.369    3.669
    my_msa_consurf_7ckl.pdb #11/B HIS 47 ND1    my_msa_consurf_7ckl.pdb #11/B TYR 48 C       -0.371    3.621
    my_msa_consurf_7ckl.pdb #11/B PHE 30 CE1    my_msa_consurf_7ckl.pdb #11/B ASN 38 ND2     -0.375    3.775
    my_msa_consurf_7ckl.pdb #11/A PHE 1381 O    my_msa_consurf_7ckl.pdb #11/A VAL 1391 CA    -0.378    3.678
    my_msa_consurf_7ckl.pdb #11/B TRP 35 CZ2    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CE3   -0.378    3.898
    my_msa_consurf_7ckl.pdb #11/B CYS 31 CB     my_msa_consurf_7ckl.pdb #11/B CYS 34 SG      -0.381    4.031
    my_msa_consurf_7ckl.pdb #11/A ASP 652 CA    my_msa_consurf_7ckl.pdb #11/A VAL 261 CG1    -0.384    4.144
    my_msa_consurf_7ckl.pdb #11/A VAL 261 CG2   my_msa_consurf_7ckl.pdb #11/A ASP 652 O      -0.387    3.687
    my_msa_consurf_7ckl.pdb #11/A MET 693 SD    my_msa_consurf_7ckl.pdb #11/A CYS 606 CA     -0.388    4.038
    my_msa_consurf_7ckl.pdb #11/A GLU 608 CG    my_msa_consurf_7ckl.pdb #11/B LEU 56 CD2     -0.392    4.152
    my_msa_consurf_7ckl.pdb #11/B PHE 30 CD1    my_msa_consurf_7ckl.pdb #11/B GLN 29 O       -0.394    3.574
    my_msa_consurf_7ckl.pdb #11/B LEU 41 CB     my_msa_consurf_7ckl.pdb #11/B LEU 49 O       -0.395    3.695
    my_msa_consurf_7ckl.pdb #11/B TRP 35 CD1    my_msa_consurf_7ckl.pdb #11/B LYS 32 O       -0.396    3.576
    my_msa_consurf_7ckl.pdb #11/A VAL 685 O     my_msa_consurf_7ckl.pdb #11/A VAL 690 CG1    -0.399    3.699
    my_msa_consurf_7ckl.pdb #11/B HIS 47 ND1    my_msa_consurf_7ckl.pdb #11/B TYR 48 CA      -0.399    3.919
    

  
232 contacts  

> contacts sel resSeparation 5 intraRes true ignoreHiddenModels true select
> true color #fffb00 reveal true log true
    
    
    Allowed overlap: -0.4
    H-bond overlap reduction: 0.4
    Ignore contacts between atoms separated by 4 bonds or less
    Ignore contacts between atoms in residues less than 5 apart in sequence
    Detect intra-residue contacts: True
    Detect intra-molecule contacts: True
    
    194 contacts
                      atom1                                       atom2                     overlap  distance
    my_msa_consurf_7ckl.pdb #11/B PHE 36 CZ     my_msa_consurf_7ckl.pdb #11/A LYS 263 NZ     0.802    2.598
    my_msa_consurf_7ckl.pdb #11/B PHE 36 CE2    my_msa_consurf_7ckl.pdb #11/A LYS 263 NZ     0.709    2.691
    my_msa_consurf_7ckl.pdb #11/B TRP 35 NE1    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CZ3   0.691    2.709
    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CZ3  my_msa_consurf_7ckl.pdb #11/B TRP 35 CD1     0.394    3.126
    my_msa_consurf_7ckl.pdb #11/A ARG 697 NH1   my_msa_consurf_7ckl.pdb #11/A SER 692 O      0.373    2.287
    my_msa_consurf_7ckl.pdb #11/A SER 651 CB    my_msa_consurf_7ckl.pdb #11/A VAL 1377 CG1   0.352    3.408
    my_msa_consurf_7ckl.pdb #11/B CYS 53 SG     my_msa_consurf_7ckl.pdb #11/B SER 33 OG      0.341    2.489
    my_msa_consurf_7ckl.pdb #11/B HIS 47 ND1    my_msa_consurf_7ckl.pdb #11/B LYS 32 CD      0.304    3.216
    my_msa_consurf_7ckl.pdb #11/A VAL 261 CG1   my_msa_consurf_7ckl.pdb #11/A TYR 654 CD1    0.233    3.407
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CG     my_msa_consurf_7ckl.pdb #11/B HIS 47 ND1     0.233    3.287
    my_msa_consurf_7ckl.pdb #11/B PHE 30 CZ     my_msa_consurf_7ckl.pdb #11/A ARG 1380 NH2   0.224    3.176
    my_msa_consurf_7ckl.pdb #11/A VAL 690 CG2   my_msa_consurf_7ckl.pdb #11/A ARG 697 NH2    0.206    3.314
    my_msa_consurf_7ckl.pdb #11/B LEU 49 CD2    my_msa_consurf_7ckl.pdb #11/B CYS 44 CB      0.193    3.567
    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CZ2  my_msa_consurf_7ckl.pdb #11/B LYS 32 CG      0.192    3.448
    my_msa_consurf_7ckl.pdb #11/A VAL 261 CG2   my_msa_consurf_7ckl.pdb #11/A SER 651 O      0.186    3.114
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CE     my_msa_consurf_7ckl.pdb #11/B HIS 47 CB      0.174    3.586
    my_msa_consurf_7ckl.pdb #11/A LEU 1398 CD2  my_msa_consurf_7ckl.pdb #11/A TYR 706 CD2    0.147    3.493
    my_msa_consurf_7ckl.pdb #11/B SER 33 CB     my_msa_consurf_7ckl.pdb #11/B CYS 53 SG      0.144    3.506
    my_msa_consurf_7ckl.pdb #11/A THR 695 CG2   my_msa_consurf_7ckl.pdb #11/B TRP 35 CZ2     0.140    3.500
    my_msa_consurf_7ckl.pdb #11/A VAL 650 CG2   my_msa_consurf_7ckl.pdb #11/B TRP 35 CE3     0.134    3.506
    my_msa_consurf_7ckl.pdb #11/A PHE 1381 CE1  my_msa_consurf_7ckl.pdb #11/B TRP 35 O       0.134    3.046
    my_msa_consurf_7ckl.pdb #11/A VAL 1396 CG2  my_msa_consurf_7ckl.pdb #11/A PHE 1389 CB    0.128    3.632
    my_msa_consurf_7ckl.pdb #11/A ALA 648 CB    my_msa_consurf_7ckl.pdb #11/A LEU 658 CD2    0.125    3.635
    my_msa_consurf_7ckl.pdb #11/B CYS 53 CB     my_msa_consurf_7ckl.pdb #11/B SER 33 OG      0.123    3.217
    my_msa_consurf_7ckl.pdb #11/A LYS 263 NZ    my_msa_consurf_7ckl.pdb #11/B PHE 36 CE1     0.105    3.295
    my_msa_consurf_7ckl.pdb #11/A VAL 1382 CG1  my_msa_consurf_7ckl.pdb #11/A MET 647 CE     0.102    3.658
    my_msa_consurf_7ckl.pdb #11/A LYS 263 CB    my_msa_consurf_7ckl.pdb #11/A TYR 649 OH     0.101    3.239
    my_msa_consurf_7ckl.pdb #11/B VAL 60 CG1    my_msa_consurf_7ckl.pdb #11/A ASP 605 OD1    0.099    3.201
    my_msa_consurf_7ckl.pdb #11/A VAL 1391 CG1  my_msa_consurf_7ckl.pdb #11/A PHE 698 CE2    0.088    3.552
    my_msa_consurf_7ckl.pdb #11/A VAL 650 CG2   my_msa_consurf_7ckl.pdb #11/B TRP 35 CZ3     0.075    3.565
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CB     my_msa_consurf_7ckl.pdb #11/B HIS 47 CE1     0.074    3.566
    my_msa_consurf_7ckl.pdb #11/B CYS 64 CB     my_msa_consurf_7ckl.pdb #11/B MET 69 O       0.074    3.226
    my_msa_consurf_7ckl.pdb #11/B VAL 60 CG2    my_msa_consurf_7ckl.pdb #11/A ASN 607 ND2    0.071    3.449
    my_msa_consurf_7ckl.pdb #11/A HIS 1186 CB   my_msa_consurf_7ckl.pdb #11/A ASN 1181 OD1   0.069    3.231
    my_msa_consurf_7ckl.pdb #11/A HIS 1186 CD2  my_msa_consurf_7ckl.pdb #11/A ASN 1181 OD1   0.067    3.113
    my_msa_consurf_7ckl.pdb #11/B HIS 47 CE1    my_msa_consurf_7ckl.pdb #11/B LYS 32 CD      0.061    3.579
    my_msa_consurf_7ckl.pdb #11/B CYS 50 CB     my_msa_consurf_7ckl.pdb #11/B GLU 37 CG      0.058    3.702
    my_msa_consurf_7ckl.pdb #11/A LEU 1398 CD2  my_msa_consurf_7ckl.pdb #11/A TYR 706 CE2    0.058    3.582
    my_msa_consurf_7ckl.pdb #11/A MET 647 CE    my_msa_consurf_7ckl.pdb #11/A GLU 1384 CB    0.054    3.706
    my_msa_consurf_7ckl.pdb #11/B TRP 35 NE1    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CE3   0.054    3.346
    my_msa_consurf_7ckl.pdb #11/A TYR 649 OH    my_msa_consurf_7ckl.pdb #11/A LYS 263 CD     0.053    3.287
    my_msa_consurf_7ckl.pdb #11/A ASP 605 O     my_msa_consurf_7ckl.pdb #11/A MET 693 SD     0.048    3.142
    my_msa_consurf_7ckl.pdb #11/A MET 647 SD    my_msa_consurf_7ckl.pdb #11/A VAL 1382 CG2   0.043    3.607
    my_msa_consurf_7ckl.pdb #11/A ILE 701 CG2   my_msa_consurf_7ckl.pdb #11/A ILE 646 CG1    0.040    3.720
    my_msa_consurf_7ckl.pdb #11/B TRP 35 O      my_msa_consurf_7ckl.pdb #11/A PHE 1381 CZ    0.034    3.146
    my_msa_consurf_7ckl.pdb #11/A PHE 1381 O    my_msa_consurf_7ckl.pdb #11/A VAL 1391 O     0.023    2.817
    my_msa_consurf_7ckl.pdb #11/B TRP 35 CE2    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CZ3   0.022    3.348
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CG     my_msa_consurf_7ckl.pdb #11/B HIS 47 CE1     0.016    3.624
    my_msa_consurf_7ckl.pdb #11/A HIS 1186 CB   my_msa_consurf_7ckl.pdb #11/A ASN 1181 ND2   0.014    3.506
    my_msa_consurf_7ckl.pdb #11/B CYS 31 SG     my_msa_consurf_7ckl.pdb #11/B CYS 53 CB      0.012    3.638
    my_msa_consurf_7ckl.pdb #11/A VAL 1391 CG1  my_msa_consurf_7ckl.pdb #11/A VAL 1396 CG1   0.010    3.750
    my_msa_consurf_7ckl.pdb #11/B LEU 71 CD2    my_msa_consurf_7ckl.pdb #11/B CYS 64 SG      0.001    3.649
    my_msa_consurf_7ckl.pdb #11/A SER 692 OG    my_msa_consurf_7ckl.pdb #11/B LEU 57 CD2     -0.004    3.344
    my_msa_consurf_7ckl.pdb #11/A ASP 652 CA    my_msa_consurf_7ckl.pdb #11/A VAL 261 CG2    -0.009    3.769
    my_msa_consurf_7ckl.pdb #11/A VAL 1382 CG2  my_msa_consurf_7ckl.pdb #11/A MET 647 CE     -0.010    3.770
    my_msa_consurf_7ckl.pdb #11/A ASN 607 CB    my_msa_consurf_7ckl.pdb #11/B VAL 60 CG2     -0.015    3.775
    my_msa_consurf_7ckl.pdb #11/A ASN 607 ND2   my_msa_consurf_7ckl.pdb #11/B LEU 56 O       -0.018    2.678
    my_msa_consurf_7ckl.pdb #11/B ZN 102 ZN     my_msa_consurf_7ckl.pdb #11/B CYS 67 SG      -0.019    2.389
    my_msa_consurf_7ckl.pdb #11/B LEU 71 CD2    my_msa_consurf_7ckl.pdb #11/B CYS 64 CB      -0.019    3.779
    my_msa_consurf_7ckl.pdb #11/B CYS 31 SG     my_msa_consurf_7ckl.pdb #11/B ZN 101 ZN      -0.020    2.390
    my_msa_consurf_7ckl.pdb #11/B CYS 44 SG     my_msa_consurf_7ckl.pdb #11/B ZN 102 ZN      -0.020    2.390
    my_msa_consurf_7ckl.pdb #11/B ZN 101 ZN     my_msa_consurf_7ckl.pdb #11/B CYS 50 SG      -0.021    2.391
    my_msa_consurf_7ckl.pdb #11/B ZN 101 ZN     my_msa_consurf_7ckl.pdb #11/B CYS 53 SG      -0.022    2.392
    my_msa_consurf_7ckl.pdb #11/B CYS 64 SG     my_msa_consurf_7ckl.pdb #11/B ZN 102 ZN      -0.023    2.393
    my_msa_consurf_7ckl.pdb #11/B ZN 101 ZN     my_msa_consurf_7ckl.pdb #11/B CYS 34 SG      -0.029    2.399
    my_msa_consurf_7ckl.pdb #11/A VAL 690 CG2   my_msa_consurf_7ckl.pdb #11/A ARG 697 CZ     -0.038    3.528
    my_msa_consurf_7ckl.pdb #11/A HIS 1186 CB   my_msa_consurf_7ckl.pdb #11/A ASN 1181 CG    -0.039    3.529
    my_msa_consurf_7ckl.pdb #11/A LYS 263 NZ    my_msa_consurf_7ckl.pdb #11/B PHE 36 CD2     -0.039    3.439
    my_msa_consurf_7ckl.pdb #11/B VAL 60 CG2    my_msa_consurf_7ckl.pdb #11/A ASN 607 CG     -0.040    3.530
    my_msa_consurf_7ckl.pdb #11/A LEU 609 CD2   my_msa_consurf_7ckl.pdb #11/A LEU 684 O      -0.041    3.341
    my_msa_consurf_7ckl.pdb #11/B SER 33 O      my_msa_consurf_7ckl.pdb #11/A MET 693 CA     -0.050    3.350
    my_msa_consurf_7ckl.pdb #11/B ZN 102 ZN     my_msa_consurf_7ckl.pdb #11/B HIS 47 NE2     -0.056    2.296
    my_msa_consurf_7ckl.pdb #11/B LEU 49 O      my_msa_consurf_7ckl.pdb #11/B LEU 41 CA      -0.058    3.358
    my_msa_consurf_7ckl.pdb #11/A THR 695 CG2   my_msa_consurf_7ckl.pdb #11/B TRP 35 NE1     -0.059    3.579
    my_msa_consurf_7ckl.pdb #11/B LEU 56 CD2    my_msa_consurf_7ckl.pdb #11/A SER 692 CB     -0.060    3.820
    my_msa_consurf_7ckl.pdb #11/A ARG 697 NH1   my_msa_consurf_7ckl.pdb #11/A SER 692 C      -0.066    3.316
    my_msa_consurf_7ckl.pdb #11/A ARG 1380 NH2  my_msa_consurf_7ckl.pdb #11/B PHE 30 CE2     -0.066    3.466
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CE     my_msa_consurf_7ckl.pdb #11/B HIS 47 ND1     -0.076    3.596
    my_msa_consurf_7ckl.pdb #11/A ASP 605 O     my_msa_consurf_7ckl.pdb #11/A MET 693 CE     -0.079    3.379
    my_msa_consurf_7ckl.pdb #11/A VAL 1382 CG1  my_msa_consurf_7ckl.pdb #11/A VAL 650 CG1    -0.079    3.839
    my_msa_consurf_7ckl.pdb #11/A VAL 261 CG1   my_msa_consurf_7ckl.pdb #11/A ASP 652 C      -0.079    3.569
    my_msa_consurf_7ckl.pdb #11/A ASP 605 CG    my_msa_consurf_7ckl.pdb #11/B VAL 60 CG1     -0.081    3.841
    my_msa_consurf_7ckl.pdb #11/A MET 693 N     my_msa_consurf_7ckl.pdb #11/B SER 33 CB      -0.083    3.603
    my_msa_consurf_7ckl.pdb #11/A ALA 1185 CB   my_msa_consurf_7ckl.pdb #11/B PRO 28 CG      -0.083    3.843
    my_msa_consurf_7ckl.pdb #11/B SER 33 O      my_msa_consurf_7ckl.pdb #11/A MET 694 N      -0.089    2.749
    my_msa_consurf_7ckl.pdb #11/B LEU 41 CD1    my_msa_consurf_7ckl.pdb #11/B PHE 30 CA      -0.096    3.856
    my_msa_consurf_7ckl.pdb #11/B HIS 47 CB     my_msa_consurf_7ckl.pdb #11/B LYS 32 NZ      -0.096    3.616
    my_msa_consurf_7ckl.pdb #11/B LEU 41 CD2    my_msa_consurf_7ckl.pdb #11/B CYS 50 CA      -0.098    3.858
    my_msa_consurf_7ckl.pdb #11/B TYR 48 CA     my_msa_consurf_7ckl.pdb #11/B VAL 42 O       -0.099    3.399
    my_msa_consurf_7ckl.pdb #11/A MET 647 SD    my_msa_consurf_7ckl.pdb #11/A VAL 1382 CG1   -0.101    3.751
    my_msa_consurf_7ckl.pdb #11/A HIS 1186 O    my_msa_consurf_7ckl.pdb #11/A ARG 1380 CA    -0.102    3.402
    my_msa_consurf_7ckl.pdb #11/B CYS 67 CB     my_msa_consurf_7ckl.pdb #11/B ASN 45 OD1     -0.103    3.403
    my_msa_consurf_7ckl.pdb #11/A VAL 1182 CG1  my_msa_consurf_7ckl.pdb #11/A GLY 1393 N     -0.107    3.627
    my_msa_consurf_7ckl.pdb #11/A LYS 263 CE    my_msa_consurf_7ckl.pdb #11/A TYR 649 CE2    -0.109    3.749
    my_msa_consurf_7ckl.pdb #11/B TYR 48 CB     my_msa_consurf_7ckl.pdb #11/B LEU 41 CB      -0.110    3.870
    my_msa_consurf_7ckl.pdb #11/B CYS 67 SG     my_msa_consurf_7ckl.pdb #11/B HIS 47 CD2     -0.110    3.640
    my_msa_consurf_7ckl.pdb #11/A ASN 1181 OD1  my_msa_consurf_7ckl.pdb #11/A HIS 1186 CG    -0.119    3.149
    my_msa_consurf_7ckl.pdb #11/A LEU 702 CG    my_msa_consurf_7ckl.pdb #11/A LEU 1398 CD2   -0.119    3.879
    my_msa_consurf_7ckl.pdb #11/B CYS 50 N      my_msa_consurf_7ckl.pdb #11/B CYS 31 SG      -0.123    3.133
    my_msa_consurf_7ckl.pdb #11/A VAL 685 CG1   my_msa_consurf_7ckl.pdb #11/A ARG 697 CB     -0.125    3.885
    my_msa_consurf_7ckl.pdb #11/B CYS 31 CB     my_msa_consurf_7ckl.pdb #11/B CYS 50 N       -0.127    3.647
    my_msa_consurf_7ckl.pdb #11/A ARG 697 CD    my_msa_consurf_7ckl.pdb #11/A VAL 685 CG1    -0.127    3.887
    my_msa_consurf_7ckl.pdb #11/B GLN 29 C      my_msa_consurf_7ckl.pdb #11/B LEU 41 CD1     -0.130    3.620
    my_msa_consurf_7ckl.pdb #11/A VAL 261 CG1   my_msa_consurf_7ckl.pdb #11/A TYR 653 N      -0.130    3.650
    my_msa_consurf_7ckl.pdb #11/B CYS 31 SG     my_msa_consurf_7ckl.pdb #11/B LEU 49 CA      -0.138    3.788
    my_msa_consurf_7ckl.pdb #11/A PHE 698 CD2   my_msa_consurf_7ckl.pdb #11/A VAL 1391 CG1   -0.138    3.778
    my_msa_consurf_7ckl.pdb #11/A ALA 1185 CB   my_msa_consurf_7ckl.pdb #11/B PRO 28 CB      -0.139    3.899
    my_msa_consurf_7ckl.pdb #11/B LEU 57 CD1    my_msa_consurf_7ckl.pdb #11/B PRO 65 CG      -0.140    3.900
    my_msa_consurf_7ckl.pdb #11/B CYS 31 SG     my_msa_consurf_7ckl.pdb #11/B LEU 49 CD1     -0.143    3.793
    my_msa_consurf_7ckl.pdb #11/B ZN 102 ZN     my_msa_consurf_7ckl.pdb #11/B HIS 47 CD2     -0.145    2.505
    my_msa_consurf_7ckl.pdb #11/B LEU 41 CD1    my_msa_consurf_7ckl.pdb #11/B PHE 30 N       -0.146    3.666
    my_msa_consurf_7ckl.pdb #11/A VAL 261 CG1   my_msa_consurf_7ckl.pdb #11/A TYR 653 CA     -0.148    3.908
    my_msa_consurf_7ckl.pdb #11/A MET 693 N     my_msa_consurf_7ckl.pdb #11/B SER 33 CA      -0.156    3.676
    my_msa_consurf_7ckl.pdb #11/A VAL 1377 CG2  my_msa_consurf_7ckl.pdb #11/A ALA 648 CB     -0.165    3.925
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CE     my_msa_consurf_7ckl.pdb #11/B HIS 47 CG      -0.173    3.663
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CB     my_msa_consurf_7ckl.pdb #11/B ILE 66 CD1     -0.174    3.934
    my_msa_consurf_7ckl.pdb #11/A ASN 1181 O    my_msa_consurf_7ckl.pdb #11/A HIS 1186 CB    -0.176    3.476
    my_msa_consurf_7ckl.pdb #11/A TYR 649 CE1   my_msa_consurf_7ckl.pdb #11/A LYS 263 CB     -0.178    3.818
    my_msa_consurf_7ckl.pdb #11/A ILE 646 CG1   my_msa_consurf_7ckl.pdb #11/A PHE 698 CD1    -0.182    3.822
    my_msa_consurf_7ckl.pdb #11/B TRP 35 CD1    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CH2   -0.183    3.703
    my_msa_consurf_7ckl.pdb #11/B CYS 67 CB     my_msa_consurf_7ckl.pdb #11/B ASN 45 ND2     -0.186    3.706
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CD     my_msa_consurf_7ckl.pdb #11/B HIS 47 CG      -0.187    3.677
    my_msa_consurf_7ckl.pdb #11/B CYS 50 CB     my_msa_consurf_7ckl.pdb #11/B LEU 41 CD2     -0.190    3.950
    my_msa_consurf_7ckl.pdb #11/A ASP 652 OD2   my_msa_consurf_7ckl.pdb #11/A ARG 1380 CD    -0.192    3.492
    my_msa_consurf_7ckl.pdb #11/B LEU 41 CD1    my_msa_consurf_7ckl.pdb #11/B TYR 48 CB      -0.194    3.954
    my_msa_consurf_7ckl.pdb #11/A TRP 1392 NE1  my_msa_consurf_7ckl.pdb #11/B LYS 32 CE      -0.196    3.716
    my_msa_consurf_7ckl.pdb #11/A ILE 646 CB    my_msa_consurf_7ckl.pdb #11/A ILE 701 CG2    -0.196    3.956
    my_msa_consurf_7ckl.pdb #11/A LYS 263 CE    my_msa_consurf_7ckl.pdb #11/B PHE 36 CZ      -0.204    3.844
    my_msa_consurf_7ckl.pdb #11/A LEU 1398 CD2  my_msa_consurf_7ckl.pdb #11/A LEU 702 CD2    -0.213    3.973
    my_msa_consurf_7ckl.pdb #11/A ARG 697 NH1   my_msa_consurf_7ckl.pdb #11/A SER 692 N      -0.213    3.493
    my_msa_consurf_7ckl.pdb #11/A LYS 263 CB    my_msa_consurf_7ckl.pdb #11/A TYR 649 CZ     -0.215    3.705
    my_msa_consurf_7ckl.pdb #11/B LEU 49 O      my_msa_consurf_7ckl.pdb #11/B VAL 42 N       -0.215    2.875
    my_msa_consurf_7ckl.pdb #11/B CYS 44 SG     my_msa_consurf_7ckl.pdb #11/B LEU 71 CD2     -0.220    3.870
    my_msa_consurf_7ckl.pdb #11/A VAL 1382 CG2  my_msa_consurf_7ckl.pdb #11/A PHE 698 CZ     -0.222    3.862
    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CH2  my_msa_consurf_7ckl.pdb #11/B LYS 32 CA      -0.225    3.865
    my_msa_consurf_7ckl.pdb #11/A LYS 263 CE    my_msa_consurf_7ckl.pdb #11/B PHE 36 CE2     -0.233    3.873
    my_msa_consurf_7ckl.pdb #11/B CYS 67 SG     my_msa_consurf_7ckl.pdb #11/B ASN 45 OD1     -0.237    3.027
    my_msa_consurf_7ckl.pdb #11/A VAL 685 O     my_msa_consurf_7ckl.pdb #11/A ARG 697 CD     -0.238    3.538
    my_msa_consurf_7ckl.pdb #11/A MET 693 N     my_msa_consurf_7ckl.pdb #11/B SER 33 C       -0.243    3.493
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CB     my_msa_consurf_7ckl.pdb #11/B HIS 47 ND1     -0.243    3.763
    my_msa_consurf_7ckl.pdb #11/A PHE 1381 CE1  my_msa_consurf_7ckl.pdb #11/B TRP 35 CB      -0.243    3.883
    my_msa_consurf_7ckl.pdb #11/A TYR 649 OH    my_msa_consurf_7ckl.pdb #11/A LYS 263 CG     -0.251    3.591
    my_msa_consurf_7ckl.pdb #11/B CYS 50 CB     my_msa_consurf_7ckl.pdb #11/B CYS 31 SG      -0.254    3.904
    my_msa_consurf_7ckl.pdb #11/B SER 33 CA     my_msa_consurf_7ckl.pdb #11/A MET 693 CA     -0.259    4.019
    my_msa_consurf_7ckl.pdb #11/A ILE 646 CG1   my_msa_consurf_7ckl.pdb #11/A ILE 701 CB     -0.262    4.022
    my_msa_consurf_7ckl.pdb #11/A ALA 648 CA    my_msa_consurf_7ckl.pdb #11/A VAL 1377 CG2   -0.270    4.030
    my_msa_consurf_7ckl.pdb #11/A TYR 706 CE2   my_msa_consurf_7ckl.pdb #11/A LEU 1398 CD1   -0.273    3.913
    my_msa_consurf_7ckl.pdb #11/A SER 651 CB    my_msa_consurf_7ckl.pdb #11/A GLY 1379 CA    -0.277    4.037
    my_msa_consurf_7ckl.pdb #11/A ILE 1378 CA   my_msa_consurf_7ckl.pdb #11/A SER 1188 O     -0.280    3.580
    my_msa_consurf_7ckl.pdb #11/B TRP 35 CE3    my_msa_consurf_7ckl.pdb #11/A MET 694 CG     -0.284    3.924
    my_msa_consurf_7ckl.pdb #11/B CYS 31 CB     my_msa_consurf_7ckl.pdb #11/B CYS 50 CB      -0.285    4.045
    my_msa_consurf_7ckl.pdb #11/A TYR 649 CZ    my_msa_consurf_7ckl.pdb #11/A LYS 263 CD     -0.288    3.778
    my_msa_consurf_7ckl.pdb #11/B SER 33 O      my_msa_consurf_7ckl.pdb #11/A MET 694 CB     -0.291    3.591
    my_msa_consurf_7ckl.pdb #11/A LYS 263 CA    my_msa_consurf_7ckl.pdb #11/A TYR 649 CE1    -0.291    3.931
    my_msa_consurf_7ckl.pdb #11/B TRP 35 NE1    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CH2   -0.300    3.700
    my_msa_consurf_7ckl.pdb #11/A TYR 706 CE2   my_msa_consurf_7ckl.pdb #11/A PHE 1389 CE2   -0.301    3.821
    my_msa_consurf_7ckl.pdb #11/A THR 695 CG2   my_msa_consurf_7ckl.pdb #11/B TRP 35 CE2     -0.303    3.793
    my_msa_consurf_7ckl.pdb #11/B LYS 32 CG     my_msa_consurf_7ckl.pdb #11/A TRP 1392 CH2   -0.305    3.945
    my_msa_consurf_7ckl.pdb #11/B CYS 31 SG     my_msa_consurf_7ckl.pdb #11/B CYS 50 SG      -0.310    3.450
    my_msa_consurf_7ckl.pdb #11/A ASN 1181 O    my_msa_consurf_7ckl.pdb #11/A HIS 1186 CD2   -0.310    3.490
    my_msa_consurf_7ckl.pdb #11/B CYS 44 SG     my_msa_consurf_7ckl.pdb #11/B CYS 67 SG      -0.311    3.451
    my_msa_consurf_7ckl.pdb #11/B ASN 38 CB     my_msa_consurf_7ckl.pdb #11/B PHE 30 CE1     -0.312    3.952
    my_msa_consurf_7ckl.pdb #11/B CYS 31 SG     my_msa_consurf_7ckl.pdb #11/B CYS 53 SG      -0.318    3.458
    my_msa_consurf_7ckl.pdb #11/B CYS 44 SG     my_msa_consurf_7ckl.pdb #11/B CYS 64 SG      -0.319    3.459
    my_msa_consurf_7ckl.pdb #11/A VAL 1182 CG1  my_msa_consurf_7ckl.pdb #11/A TRP 1392 CA    -0.329    4.089
    my_msa_consurf_7ckl.pdb #11/A ARG 1380 CA   my_msa_consurf_7ckl.pdb #11/A VAL 1187 CA    -0.329    4.089
    my_msa_consurf_7ckl.pdb #11/B TRP 35 CE3    my_msa_consurf_7ckl.pdb #11/A PHE 1381 CD1   -0.333    3.853
    my_msa_consurf_7ckl.pdb #11/B PHE 30 O      my_msa_consurf_7ckl.pdb #11/B TYR 48 CB      -0.340    3.640
    my_msa_consurf_7ckl.pdb #11/A ASP 652 C     my_msa_consurf_7ckl.pdb #11/A VAL 261 CG2    -0.342    3.832
    my_msa_consurf_7ckl.pdb #11/A HIS 1186 CB   my_msa_consurf_7ckl.pdb #11/A THR 1344 CG2   -0.344    4.104
    my_msa_consurf_7ckl.pdb #11/B CYS 50 CB     my_msa_consurf_7ckl.pdb #11/B GLU 37 CB      -0.346    4.106
    my_msa_consurf_7ckl.pdb #11/B CYS 64 CB     my_msa_consurf_7ckl.pdb #11/B LEU 71 CG      -0.347    4.107
    my_msa_consurf_7ckl.pdb #11/B PHE 30 CD1    my_msa_consurf_7ckl.pdb #11/B ASN 38 CB      -0.349    3.989
    my_msa_consurf_7ckl.pdb #11/A LEU 702 CD2   my_msa_consurf_7ckl.pdb #11/A VAL 1396 CG2   -0.350    4.110
    my_msa_consurf_7ckl.pdb #11/A TYR 649 CZ    my_msa_consurf_7ckl.pdb #11/A LYS 263 CG     -0.351    3.841
    my_msa_consurf_7ckl.pdb #11/A ARG 1380 CZ   my_msa_consurf_7ckl.pdb #11/B PHE 30 CZ      -0.353    3.723
    my_msa_consurf_7ckl.pdb #11/A MET 693 N     my_msa_consurf_7ckl.pdb #11/B SER 33 O       -0.358    3.018
    my_msa_consurf_7ckl.pdb #11/A ARG 697 NH1   my_msa_consurf_7ckl.pdb #11/A VAL 690 CG2    -0.358    3.878
    my_msa_consurf_7ckl.pdb #11/A VAL 261 CG2   my_msa_consurf_7ckl.pdb #11/A SER 651 C      -0.359    3.849
    my_msa_consurf_7ckl.pdb #11/B TRP 35 CE2    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CE3   -0.362    3.732
    my_msa_consurf_7ckl.pdb #11/A VAL 690 CB    my_msa_consurf_7ckl.pdb #11/A ARG 697 NH1    -0.364    3.884
    my_msa_consurf_7ckl.pdb #11/A ILE 646 CG1   my_msa_consurf_7ckl.pdb #11/A PHE 698 CE1    -0.366    4.006
    my_msa_consurf_7ckl.pdb #11/A VAL 1182 CG1  my_msa_consurf_7ckl.pdb #11/A PHE 1381 O     -0.369    3.669
    my_msa_consurf_7ckl.pdb #11/B PHE 30 CE1    my_msa_consurf_7ckl.pdb #11/B ASN 38 ND2     -0.375    3.775
    my_msa_consurf_7ckl.pdb #11/A PHE 1381 O    my_msa_consurf_7ckl.pdb #11/A VAL 1391 CA    -0.378    3.678
    my_msa_consurf_7ckl.pdb #11/B TRP 35 CZ2    my_msa_consurf_7ckl.pdb #11/A TRP 1392 CE3   -0.378    3.898
    my_msa_consurf_7ckl.pdb #11/B CYS 67 CB     my_msa_consurf_7ckl.pdb #11/B ASN 45 CG      -0.380    3.870
    my_msa_consurf_7ckl.pdb #11/A VAL 261 CG1   my_msa_consurf_7ckl.pdb #11/A ASP 652 CA     -0.384    4.144
    my_msa_consurf_7ckl.pdb #11/A VAL 261 CG2   my_msa_consurf_7ckl.pdb #11/A ASP 652 O      -0.387    3.687
    my_msa_consurf_7ckl.pdb #11/A MET 693 SD    my_msa_consurf_7ckl.pdb #11/A CYS 606 CA     -0.388    4.038
    my_msa_consurf_7ckl.pdb #11/A GLU 1384 CB   my_msa_consurf_7ckl.pdb #11/A PHE 1389 CE1   -0.391    4.031
    my_msa_consurf_7ckl.pdb #11/A GLU 608 CG    my_msa_consurf_7ckl.pdb #11/B LEU 56 CD2     -0.392    4.152
    my_msa_consurf_7ckl.pdb #11/B LEU 41 CB     my_msa_consurf_7ckl.pdb #11/B LEU 49 O       -0.395    3.695
    my_msa_consurf_7ckl.pdb #11/A VAL 685 O     my_msa_consurf_7ckl.pdb #11/A VAL 690 CG1    -0.399    3.699
    

  
194 contacts  

> select clear

> hide #13 models

> show #12 models

> undo

> select clear

> hide #13 models

> select #11/A

11138 atoms, 11335 bonds, 102 pseudobonds, 1416 residues, 4 models selected  

> hide #12 models

> select subtract #11/A:1392

11124 atoms, 11318 bonds, 101 pseudobonds, 1415 residues, 5 models selected  

> select subtract #11/A:1391

11117 atoms, 11311 bonds, 96 pseudobonds, 1414 residues, 5 models selected  

> select subtract #11/A:1183

11111 atoms, 11304 bonds, 96 pseudobonds, 1413 residues, 5 models selected  

> select subtract #11/A:1348

11101 atoms, 11292 bonds, 96 pseudobonds, 1412 residues, 5 models selected  

> select subtract #11/A:607

11093 atoms, 11283 bonds, 96 pseudobonds, 1411 residues, 5 models selected  

> select subtract #11/A:690

11086 atoms, 11275 bonds, 91 pseudobonds, 1410 residues, 5 models selected  

> select subtract #11/A:691

11077 atoms, 11266 bonds, 91 pseudobonds, 1409 residues, 5 models selected  

> select subtract #11/A:692

11071 atoms, 11260 bonds, 88 pseudobonds, 1408 residues, 5 models selected  

> select subtract #11/A:693

11063 atoms, 11252 bonds, 85 pseudobonds, 1407 residues, 5 models selected  

> select subtract #11/A:694

11055 atoms, 11244 bonds, 85 pseudobonds, 1406 residues, 5 models selected  

> select subtract #11/A:695

11048 atoms, 11237 bonds, 85 pseudobonds, 1405 residues, 5 models selected  

> select add #11/A:1391

11055 atoms, 11243 bonds, 85 pseudobonds, 1406 residues, 5 models selected  

> select add #11/A:1392

11069 atoms, 11258 bonds, 85 pseudobonds, 1407 residues, 5 models selected  

> select subtract #11/A:650

11062 atoms, 11250 bonds, 84 pseudobonds, 1406 residues, 5 models selected  

> select subtract #11/A:1381

11051 atoms, 11237 bonds, 83 pseudobonds, 1405 residues, 5 models selected  

> select subtract #11/A:1380

11040 atoms, 11226 bonds, 80 pseudobonds, 1404 residues, 5 models selected  

> select add #11/A:1381

11051 atoms, 11237 bonds, 80 pseudobonds, 1405 residues, 5 models selected  

> select subtract #11/A:1381

11040 atoms, 11226 bonds, 80 pseudobonds, 1404 residues, 5 models selected  

> select subtract #11/A:1185

11035 atoms, 11220 bonds, 80 pseudobonds, 1403 residues, 5 models selected  

> select subtract #11/A:698

11024 atoms, 11207 bonds, 77 pseudobonds, 1402 residues, 5 models selected  

> select subtract #11/A:263

11015 atoms, 11197 bonds, 68 pseudobonds, 1401 residues, 5 models selected  

> select subtract #11/A:1392

11001 atoms, 11182 bonds, 68 pseudobonds, 1400 residues, 5 models selected  

> select add #11/A:1381

11012 atoms, 11193 bonds, 68 pseudobonds, 1401 residues, 5 models selected  

> select add #11/A:1380

11023 atoms, 11203 bonds, 68 pseudobonds, 1402 residues, 5 models selected  

> select subtract #11/A:1380

11012 atoms, 11193 bonds, 68 pseudobonds, 1401 residues, 5 models selected  

> select subtract #11/A:1381

11001 atoms, 11182 bonds, 68 pseudobonds, 1400 residues, 5 models selected  

> select subtract #11/A:1391

10994 atoms, 11176 bonds, 68 pseudobonds, 1399 residues, 5 models selected  

> select add #11/A:1391

11001 atoms, 11182 bonds, 68 pseudobonds, 1400 residues, 5 models selected  

> select subtract #11/A:1391

10994 atoms, 11176 bonds, 68 pseudobonds, 1399 residues, 5 models selected  

> select add #11/A:1391

11001 atoms, 11182 bonds, 68 pseudobonds, 1400 residues, 5 models selected  

> select subtract #11/A:1391

10994 atoms, 11176 bonds, 68 pseudobonds, 1399 residues, 5 models selected  

> color (#!11 & sel) #008f00ff

> color (#!11 & sel) #945200ff

> color (#!11 & sel) #424242ff

> color (#!11 & sel) #5e5e5eff

> show #12 models

> hide #12 models

> select clear

> select #11/A

11138 atoms, 11335 bonds, 102 pseudobonds, 1416 residues, 4 models selected  

> show sel surfaces

> transparency (#!11 & sel) 60

> select clear

> show #12 models

> ui tool show ""Side View""

> hide #12 models

> close #13

Cell requested for row 0 is out of bounds for table with 0 rows! Resizing
table model.  

> select #11 /A :263 #11 /A :605 #11 /A :607 #11 /A :608 #11 /A :650 #11 /A
> :651 #11 /A :690 #11 /A :691 #11 /A :692 #11 /A :693 #11 /A :694 #11 /A :695
> #11 /A :698 #11 /A :1183 #11 /A :1184 #11 /A :1185 #11 /A :1380 #11 /A :1381
> #11 /A :1391 #11 /A :1392 #11 /B :28 #11 /B :30 #11 /B :31 #11 /B :32 #11 /B
> :33 #11 /B :34 #11 /B :35 #11 /B :36 #11 /B :52 #11 /B :53 #11 /B :56 #11 /B
> :57 #11 /B :59 #11 /B :60 #11 /B :65

283 atoms, 278 bonds, 292 pseudobonds, 35 residues, 2 models selected  

Cell requested for row 0 is out of bounds for table with 0 rows! Resizing
table model.  

> ui tool show H-Bonds

> hbonds sel select true reveal true log true

The following atoms were skipped as donors/acceptors due to missing heavy-atom
bond partners: 7ckl_alphabundle_fit.pdb #6/A PRO 930 N;
my_msa_consurf_7ckl.pdb #11/A PRO 930 N  

    
    
    Finding intermodel H-bonds
    Finding intramodel H-bonds
    Constraints relaxed by 0.4 angstroms and 20 degrees
    Models used:
    	1 bantou289.B99990001.pdb
    	2 bantou289.B99990002.pdb
    	3 bantou289.B99990003.pdb
    	4 bantou289.B99990004.pdb
    	5 bantou289.B99990005.pdb
    	6 7ckl_alphabundle_fit.pdb
    	7 7och_260-380_fit.pdb
    	8 7oe3_1520-1790_fit.pdb
    	9 7oea_fit.pdb
    	10 7ojn_430-620_fit.pdb
    	11 my_msa_consurf_7ckl.pdb
    
    20 H-bonds
    H-bonds (donor, acceptor, hydrogen, D..A dist, D-H..A dist):
    my_msa_consurf_7ckl.pdb #11/A LEU 267 N    my_msa_consurf_7ckl.pdb #11/A LYS 263 O    no hydrogen  2.921  N/A
    my_msa_consurf_7ckl.pdb #11/A ASN 607 ND2  my_msa_consurf_7ckl.pdb #11/B LEU 56 O     no hydrogen  2.678  N/A
    my_msa_consurf_7ckl.pdb #11/A SER 651 OG   bantou289.B99990001.pdb #1/A GLU 1714 OE2  no hydrogen  3.464  N/A
    my_msa_consurf_7ckl.pdb #11/A SER 651 OG   my_msa_consurf_7ckl.pdb #11/A ALA 648 O    no hydrogen  2.720  N/A
    my_msa_consurf_7ckl.pdb #11/A LYS 691 NZ   my_msa_consurf_7ckl.pdb #11/A GLU 688 O    no hydrogen  2.794  N/A
    my_msa_consurf_7ckl.pdb #11/A MET 694 N    my_msa_consurf_7ckl.pdb #11/B SER 33 O     no hydrogen  2.749  N/A
    my_msa_consurf_7ckl.pdb #11/A THR 695 OG1  my_msa_consurf_7ckl.pdb #11/A ASN 696 OD1  no hydrogen  2.880  N/A
    my_msa_consurf_7ckl.pdb #11/A ASN 696 N    my_msa_consurf_7ckl.pdb #11/A MET 693 O    no hydrogen  3.272  N/A
    my_msa_consurf_7ckl.pdb #11/A PHE 698 N    my_msa_consurf_7ckl.pdb #11/A MET 694 O    no hydrogen  2.886  N/A
    my_msa_consurf_7ckl.pdb #11/A LYS 699 N    my_msa_consurf_7ckl.pdb #11/A THR 695 O    no hydrogen  2.916  N/A
    my_msa_consurf_7ckl.pdb #11/A LEU 702 N    my_msa_consurf_7ckl.pdb #11/A PHE 698 O    no hydrogen  2.875  N/A
    my_msa_consurf_7ckl.pdb #11/A SER 1183 N   my_msa_consurf_7ckl.pdb #11/A LYS 1179 O   no hydrogen  2.924  N/A
    my_msa_consurf_7ckl.pdb #11/A MET 1184 N   my_msa_consurf_7ckl.pdb #11/A ASN 1181 O   no hydrogen  3.291  N/A
    my_msa_consurf_7ckl.pdb #11/A ALA 1185 N   my_msa_consurf_7ckl.pdb #11/A VAL 1182 O   no hydrogen  2.963  N/A
    my_msa_consurf_7ckl.pdb #11/B CYS 31 SG    my_msa_consurf_7ckl.pdb #11/B SER 33 OG    no hydrogen  2.803  N/A
    my_msa_consurf_7ckl.pdb #11/B TRP 35 N     my_msa_consurf_7ckl.pdb #11/B CYS 31 O     no hydrogen  3.055  N/A
    my_msa_consurf_7ckl.pdb #11/B CYS 53 SG    my_msa_consurf_7ckl.pdb #11/A LYS 691 O    no hydrogen  3.662  N/A
    my_msa_consurf_7ckl.pdb #11/B CYS 53 SG    my_msa_consurf_7ckl.pdb #11/B SER 33 OG    no hydrogen  2.489  N/A
    my_msa_consurf_7ckl.pdb #11/B LEU 56 N     my_msa_consurf_7ckl.pdb #11/B ASN 52 O     no hydrogen  2.913  N/A
    my_msa_consurf_7ckl.pdb #11/B LEU 57 N     my_msa_consurf_7ckl.pdb #11/B CYS 53 O     no hydrogen  2.881  N/A
    

  
20 hydrogen bonds found  

> select clear

> save /Users/gabriele/Desktop/fig.png> width 4000 height 4000
> transparentBackground trueA

No known data format for file suffix '.png>'  

> save /Users/gabriele/Desktop/fig.png width 4000 height 4000
> transparentBackground trueA

Invalid ""transparentBackground"" argument: Expected true or false (or 1 or 0)  

> save /Users/gabriele/Desktop/fig.png width 4000 height 4000
> transparentBackground true

> select #11/B

383 atoms, 391 bonds, 13 pseudobonds, 51 residues, 3 models selected  

> hide sel cartoons

> hide sel atoms

> select #11/B

383 atoms, 391 bonds, 13 pseudobonds, 51 residues, 3 models selected  

> show sel atoms

> show sel cartoons

> hide sel atoms


===== Log before crash end =====

Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.9 (2024-12-11)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 Metal - 88.1
OpenGL renderer: Apple M3 Pro
OpenGL vendor: Apple

Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: Mac15,6
      Model Number: Z1AX0038VD/A
      Chip: Apple M3 Pro
      Total Number of Cores: 11 (5 performance and 6 efficiency)
      Memory: 18 GB
      System Firmware Version: 10151.121.1
      OS Loader Version: 10151.121.1

Software:

    System Software Overview:

      System Version: macOS 14.5 (23F79)
      Kernel Version: Darwin 23.5.0
      Time since boot: 5 days, 2 hours, 38 minutes

Graphics/Displays:

    Apple M3 Pro:

      Chipset Model: Apple M3 Pro
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 14
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-in Liquid Retina XDR Display
          Resolution: 3024 x 1964 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: No
          Connection Type: Internal
        SyncMaster:
          Resolution: 1920 x 1200 (WUXGA - Widescreen Ultra eXtended Graphics Array)
          UI Looks like: 1920 x 1200 @ 60.00Hz
          Mirror: Off
          Online: Yes
          Rotation: Supported


Installed Packages:
    alabaster: 1.0.0
    anyio: 4.7.0
    appdirs: 1.4.4
    appnope: 0.1.4
    asttokens: 3.0.0
    auditwheel: 6.1.0
    babel: 2.16.0
    beautifulsoup4: 4.12.3
    blockdiag: 3.0.0
    blosc2: 3.0.0
    build: 1.2.1
    certifi: 2023.11.17
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.0
    ChimeraX-AddCharge: 1.5.18
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.5
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.16.1
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.58.8
    ChimeraX-AtomicLibrary: 14.1.11
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.4.0
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.6
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.9
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.4
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2.6
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.3
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.2.1
    ChimeraX-Label: 1.1.14
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.6
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7.2
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14.2
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.18
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.14
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.6
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-PICKLUSTER: 0.5
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.2
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.2
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.6
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.14
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.0
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.18.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.41
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    contourpy: 1.3.1
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.0.10
    debugpy: 1.8.9
    decorator: 5.1.1
    docutils: 0.21.2
    executing: 2.1.0
    filelock: 3.15.4
    fonttools: 4.55.3
    funcparserlib: 2.0.0a0
    glfw: 2.8.0
    grako: 3.16.5
    h11: 0.14.0
    h5py: 3.12.1
    html2text: 2024.2.26
    httpcore: 1.0.7
    httpx: 0.28.1
    idna: 3.10
    ihm: 1.3
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    ipykernel: 6.29.5
    ipython: 8.26.0
    ipywidgets: 8.1.5
    jedi: 0.19.1
    Jinja2: 3.1.4
    jupyter_client: 8.6.2
    jupyter_core: 5.7.2
    jupyterlab_widgets: 3.0.13
    kiwisolver: 1.4.7
    line_profiler: 4.1.3
    lxml: 5.2.2
    lz4: 4.3.3
    MarkupSafe: 3.0.2
    matplotlib: 3.9.2
    matplotlib-inline: 0.1.7
    msgpack: 1.0.8
    ndindex: 1.9.2
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.2
    numpy: 1.26.4
    openvr: 1.26.701
    packaging: 23.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pexpect: 4.9.0
    pillow: 10.4.0
    pip: 24.2
    pkginfo: 1.11.1
    platformdirs: 4.3.6
    prompt_toolkit: 3.0.48
    psutil: 6.0.0
    ptyprocess: 0.7.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pyelftools: 0.31
    Pygments: 2.18.0
    pynmrstar: 3.3.4
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.3401
    pyparsing: 3.2.0
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.7.1
    PyQt6-Qt6: 6.7.3
    PyQt6-WebEngine-commercial: 6.7.0
    PyQt6-WebEngine-Qt6: 6.7.3
    PyQt6-WebEngineSubwheel-Qt6: 6.7.3
    PyQt6_sip: 13.8.0
    python-dateutil: 2.9.0.post0
    pytz: 2024.2
    pyzmq: 26.2.0
    qtconsole: 5.5.2
    QtPy: 2.4.2
    qtshim: 1.0
    RandomWords: 0.4.0
    requests: 2.32.3
    scipy: 1.14.0
    setuptools: 72.1.0
    sfftk-rw: 0.8.1
    six: 1.16.0
    sniffio: 1.3.1
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.6
    Sphinx: 8.0.2
    sphinx-autodoc-typehints: 2.2.3
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    stack-data: 0.6.3
    superqt: 0.6.3
    tables: 3.10.1
    tcia_utils: 1.5.1
    tifffile: 2024.7.24
    tinyarray: 1.2.4
    tornado: 6.4.2
    traitlets: 5.14.3
    typing_extensions: 4.12.2
    tzdata: 2024.2
    urllib3: 2.2.3
    wcwidth: 0.2.13
    webcolors: 24.6.0
    wheel: 0.43.0
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.13
}}}
"	defect	new	normal		Unassigned									
