id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
1751	'Alignment' object has no attribute 'suspend_notify_viewers'	cody.warren@…	Eric Pettersen	"{{{
The following bug report has been submitted:
Platform:        Darwin-18.2.0-x86_64-i386-64bit
ChimeraX Version: 0.9 (2019-03-05)
Description
Opened a recently dowloaded .pdb file

Log:
UCSF ChimeraX version: 0.9 (2019-03-05)  
© 2016-2019 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open ""/Users/CJWarren/SawyerLab/Positive_selection_analyses/2019 -
Bats/ANPEP/PRANK/Crystal structure/6atk.pdb""

6atk.pdb title:  
Crystal structure of the human coronavirus 229E spike protein receptor binding
domain In complex with human aminopeptidase N [more info...]  
  
Chain information for 6atk.pdb #1  
---  
Chain | Description  
A B C | aminopeptidase N  
D E F | spike glycoprotein  
  
Non-standard residues in 6atk.pdb #1  
---  
NAG — N-acetyl-D-glucosamine  
ZN — zinc ion  
  

> sequence chain #1/A#1/B#1/C

Alignment identifier is 1  
Traceback (most recent call last):  
File
""/Users/CJWarren/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/gui.py"", line 536, in customEvent  
func(*args, **kw)  
File
""/Users/CJWarren/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py"", line 300, in defer  
cxcmd(session, topic)  
File
""/Users/CJWarren/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/ui/widgets/htmlview.py"", line 419, in cxcmd  
run(session, cmd)  
File
""/Users/CJWarren/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/commands/run.py"", line 31, in run  
results = command.run(text, log=log)  
File
""/Users/CJWarren/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/core/commands/cli.py"", line 2617, in run  
result = ci.function(session, **kw_args)  
File
""/Users/CJWarren/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/seqalign/cmd.py"", line 148, in seqalign_chain  
alignment.suspend_notify_viewers()  
AttributeError: 'Alignment' object has no attribute 'suspend_notify_viewers'  
  
AttributeError: 'Alignment' object has no attribute 'suspend_notify_viewers'  
  
File
""/Users/CJWarren/Applications/ChimeraX.app/Contents/Library/Frameworks/Python.framework/Versions/3.7/lib/python3.7/site-
packages/chimerax/seqalign/cmd.py"", line 148, in seqalign_chain  
alignment.suspend_notify_viewers()  
  
See log for complete Python traceback.  
  




OpenGL version: 4.1 INTEL-12.4.7
OpenGL renderer: Intel(R) Iris(TM) Graphics 6100
OpenGL vendor: Intel Inc.
File attachment: 6atk.pdb

}}}

[attachment:""6atk.pdb""]
"	defect	closed	normal		Sequence		fixed						all	ChimeraX