id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 17487 Crash on Mac waking from sleep chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-15.4.1-arm64-arm-64bit ChimeraX Version: 1.10.dev202501142332 (2025-01-14 23:32:44 UTC) Description Last time you used ChimeraX it crashed. This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX. 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: [ { ""treatmentId"" : ""4cfb9672-7b7b-42d8-a7dc-b675ffa2f5dc"", ""experimentId"" : ""67f46877b1ea9f1f114b8d0b"", ""deploymentId"" : 400000001 } ] } } ===== Log before crash start ===== Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.10.dev202501142332 (2025-01-14) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open /Users/maryamfeghhi/Desktop/maps/one-tail-ec.mrc Opened one-tail-ec.mrc as #1, grid size 227,227,663, pixel 0.927,0.927,0.927, shown at level 1.19, step 2, values float32 > close #1 > open /Users/maryamfeghhi/Desktop/maps/Newly-emerged/Single-tail-emerged.mrc > format mrc Opened Single-tail-emerged.mrc as #1, grid size 94,47,698, pixel 0.927,0.927,0.927, shown at level 1.82, step 1, values float32 > set bgColor white > volume #1 level 0.6246 > color #1.1 dim gray > select clear > surface dust #1 size 9.27 > volume #1 level 0.5571 > transparency #1.1 40 > select clear > transparency #1.1 30 > select clear > save /Users/maryamfeghhi/Desktop/image3.png supersample 3 > open /Users/maryamfeghhi/Desktop/maps/Newly-emerged/Single-tail-emerged.mrc > format mrc Opened Single-tail-emerged.mrc as #2, grid size 94,47,698, pixel 0.927,0.927,0.927, shown at level 1.82, step 1, values float32 > volume #2 level 0.5475 > volume #2 color #005493 > volume #2 color #0096ff > transparency #2.1 60 > select clear > volume #1 level 0.5089 > transparency #1.1 40 > select clear > volume #2 level 0.5089 > volume #1 level 0.5089 > volume #2 level 0.5378 > transparency #1.1 60 > select clear > transparency #2.1 50 > select clear > transparency #1.1 20 > transparency #1.1 30 > select clear > save /Users/maryamfeghhi/Desktop/image3.png supersample 3 > volume #1 color #ebebeb > volume #2 level 0.5282 > transparency #2.1 10 > select clear > transparency #1.1 90 > select clear > volume #1 color #ebebeb > transparency #1.1 100 > select clear > set bgColor black > set bgColor transparent > transparency #1.1 20 > select clear > set bgColor white > set bgColor #ffffff00 > volume #1 color #d6d6d6 > volume #2 level 0.5185 > volume #2 level 0.518 > volume #2 level 0.515 > volume #2 level 0.513 > volume #2 level 0.509 > volume #1 color silver > volume #1 color darkgrey > transparency #1.1 30 > select clear > transparency #1.1 20 > select clear > save /Users/maryamfeghhi/Desktop/image3.png supersample 3 > save /Users/maryamfeghhi/Desktop/image4.png supersample 3 > volume #1 color #76d6ff > volume #2 color #0433ff > volume #2 color #011993 > volume #2 color #005493 > volume #2 level 0.5 > volume #2 level 0.507 > volume #2 level 0.509 > volume #2 level 0.508 > transparency #2.1 30 > select clear > volume #1 level 0.507 > volume #1 level 0.508 > volume #1 level 0.507 > volume #2 color #0096ff > volume #2 color #011993 > volume #2 level 0.507 > volume #1 level 0.508 > volume #1 level 0.506 > volume #2 level 0.5166 > volume #2 level 0.518 > volume #2 level 0.519 > volume #2 level 0.52 > volume #2 level 0.521 > volume #2 level 0.522 > volume #2 level 0.524 > volume #2 level 0.526 > volume #2 level 0.527 > volume #2 level 0.528 > volume #2 level 0.529 > volume #2 level 0.53 > volume #2 level 0.54 > volume #2 level 0.55 > volume #2 level 0.56 > volume #2 level 0.57 > volume #2 level 0.58 > volume #1 color #73fdff > volume #1 color #76d6ff > volume #2 level 0.59 > volume #2 level 0.6 > volume #2 level 0.62 > transparency #1.1 60 > transparency #1.1 40 > transparency #1.1 30 > select clear > volume #1 level 0.51 > volume #1 level 0.53 > volume #1 level 0.51 > volume #1 level 0.45 > open /Users/maryamfeghhi/Desktop/maps/segmentation-Eclosed/Eclosed-single- > tail.mrc Opened Eclosed-single-tail.mrc as #3, grid size 93,46,662, pixel 0.927,0.927,0.927, shown at level 0.807, step 1, values float32 > close #1 > volume #3 level 0.332 > ui mousemode right ""move picked models"" > view matrix models #3,1,0,0,20.36,0,1,0,13.519,0,0,1,13.705 > ui tool show ""Fit in Map"" > fitmap #2 inMap #3 Fit map Single-tail-emerged.mrc in map Eclosed-single-tail.mrc using 202398 points correlation = 0.7795, correlation about mean = 0.4346, overlap = 1.029e+05 steps = 108, shift = 5.23, angle = 0.923 degrees Position of Single-tail-emerged.mrc (#2) relative to Eclosed-single-tail.mrc (#3) coordinates: Matrix rotation and translation 0.99987080 0.01589603 -0.00238570 -23.98839297 -0.01589331 0.99987302 0.00115627 -11.91084337 0.00240378 -0.00111821 0.99999649 -12.73444275 Axis -0.07057360 -0.14861018 -0.98637436 Axis point -611.04162232 1432.97268636 0.00000000 Rotation angle (degrees) 0.92331779 Shift along axis 16.02394769 > select clear > open /Users/maryamfeghhi/Desktop/maps/foragers-single-tail.mrc format mrc Opened foragers-single-tail.mrc as #1, grid size 93,62,670, pixel 0.927,0.927,0.927, shown at level 1.69, step 1, values float32 > volume #1 color silver > volume #1 level 0.6668 > view matrix models #1,1,0,0,38.654,0,1,0,13.364,0,0,1,14.3 > volume #1 color #73fdff > volume #1 color #73fcd6 > volume #1 color #00fdff > volume #1 color #74f9fe > volume #1 color #76d6ff > volume #3 color darkgrey > ui mousemode right ""move picked models"" > view matrix models #3,1,0,0,34.684,0,1,0,16.564,0,0,1,14.682 > view matrix models #3,1,0,0,35.449,0,1,0,16.896,0,0,1,15.543 > view matrix models #3,1,0,0,36.056,0,1,0,14.22,0,0,1,16.268 > fitmap #1 inMap #3 Fit map foragers-single-tail.mrc in map Eclosed-single-tail.mrc using 175989 points correlation = 0.9445, correlation about mean = 0.7333, overlap = 1.371e+05 steps = 132, shift = 2.55, angle = 1.74 degrees Position of foragers-single-tail.mrc (#1) relative to Eclosed-single-tail.mrc (#3) coordinates: Matrix rotation and translation 0.99953824 0.03037297 0.00089218 -10.81372580 -0.03037233 0.99953839 -0.00072497 11.51848171 -0.00091379 0.00069753 0.99999934 0.57887202 Axis 0.02340068 0.02970885 -0.99928464 Axis point 374.22942740 361.34368166 0.00000000 Rotation angle (degrees) 1.74173866 Shift along axis -0.48930564 > select clear > volume #1 color #00fdff > volume #1 color #73fdff > transparency #1.1 30 > select clear > volume #1 level 0.665 > volume #1 level 0.66 > volume #3 level 0.2751 > volume #1 level 0.66 > volume #1 level 0.67 > volume #1 level 0.68 > volume #1 level 0.65 > save /Users/maryamfeghhi/Desktop/image5.png supersample 3 > save /Users/maryamfeghhi/Desktop/image6.png supersample 3 > view matrix models > #2,0.99987,0.015896,-0.0023857,0.81209,-0.015893,0.99987,0.0011563,-5.5199,0.0024038,-0.0011182,1,3.2727 > view matrix models > #2,0.99987,0.015896,-0.0023857,12.38,-0.015893,0.99987,0.0011563,-2.3235,0.0024038,-0.0011182,1,-3.6686 > view matrix models > #2,0.99987,0.015896,-0.0023857,12.673,-0.015893,0.99987,0.0011563,0.83348,0.0024038,-0.0011182,1,-4.7511 > fitmap #1 inMap #2 Fit map foragers-single-tail.mrc in map Single-tail-emerged.mrc using 179147 points correlation = 0.9198, correlation about mean = 0.6617, overlap = 3.072e+05 steps = 116, shift = 2.52, angle = 1.48 degrees Position of foragers-single-tail.mrc (#1) relative to Single-tail-emerged.mrc (#2) coordinates: Matrix rotation and translation 0.99917863 0.04036765 0.00353895 2.45877765 -0.04036079 0.99918319 -0.00198865 34.08819178 -0.00361634 0.00184418 0.99999176 23.63619420 Axis 0.04723992 0.08818941 -0.99498292 Axis point 890.49996730 -66.65769625 0.00000000 Rotation angle (degrees) 2.32499896 Shift along axis -20.39523975 > volume #1 level 0.655 > fitmap #1 inMap #2 Fit map foragers-single-tail.mrc in map Single-tail-emerged.mrc using 178215 points correlation = 0.9203, correlation about mean = 0.662, overlap = 3.069e+05 steps = 40, shift = 0.0168, angle = 0.204 degrees Position of foragers-single-tail.mrc (#1) relative to Single-tail-emerged.mrc (#2) coordinates: Matrix rotation and translation 0.99902848 0.04393024 0.00349807 1.04430028 -0.04392324 0.99903280 -0.00205445 35.53031911 -0.00358494 0.00189880 0.99999177 23.59942053 Axis 0.04480762 0.08028155 -0.99576461 Axis point 847.14453078 -26.04874286 0.00000000 Rotation angle (degrees) 2.52834250 Shift along axis -20.60024593 > fitmap #1 inMap #2 Fit map foragers-single-tail.mrc in map Single-tail-emerged.mrc using 178215 points correlation = 0.9206, correlation about mean = 0.6626, overlap = 3.067e+05 steps = 28, shift = 0.00938, angle = 0.0493 degrees Position of foragers-single-tail.mrc (#1) relative to Single-tail-emerged.mrc (#2) coordinates: Matrix rotation and translation 0.99899060 0.04478767 0.00344103 0.72093480 -0.04478072 0.99899469 -0.00207298 35.87880388 -0.00353041 0.00191680 0.99999193 23.56247861 Axis 0.04436640 0.07752266 -0.99600294 Axis point 837.36502301 -17.68530907 0.00000000 Rotation angle (degrees) 2.57711161 Shift along axis -20.65489233 > save /Users/maryamfeghhi/Desktop/image7.png supersample 3 > fitmap #3 inMap #1 Fit map Eclosed-single-tail.mrc in map foragers-single-tail.mrc using 195767 points correlation = 0.9406, correlation about mean = 0.7713, overlap = 1.393e+05 steps = 96, shift = 2.49, angle = 1.19 degrees Position of Eclosed-single-tail.mrc (#3) relative to foragers-single-tail.mrc (#1) coordinates: Matrix rotation and translation 0.99919931 -0.04000241 -0.00074496 15.23826773 0.04000308 0.99919914 0.00090910 -14.81086828 0.00070799 -0.00093817 0.99999931 -0.41452856 Axis -0.02307938 -0.01815282 0.99956882 Axis point 377.93789013 373.08206192 0.00000000 Rotation angle (degrees) 2.29358952 Shift along axis -0.49718057 > volume #3 level 0.28 > volume #3 level 0.29 > volume #3 level 0.2666 > save /Users/maryamfeghhi/Desktop/image8.png supersample 3 > transparency #2.1 40 > select clear > transparency #1.1 40 > select clear > transparency #3.1 40 > select clear > save /Users/maryamfeghhi/Desktop/image9.png supersample 3 > save /Users/maryamfeghhi/Desktop/image10.png supersample 3 > save /Users/maryamfeghhi/Desktop/image11.png supersample 3 > open /Users/maryamfeghhi/Desktop/maps/fo-flit.mrc Opened fo-flit.mrc as #4, grid size 48,53,91, pixel 0.927,0.927,0.927, shown at level 1.72, step 1, values float32 > close #4 > open /Users/maryamfeghhi/Desktop/maps/flit-ne.mrc Opened flit-ne.mrc as #4, grid size 59,120,83, pixel 0.927,0.927,0.927, shown at level 0.000139, step 1, values float32 > volume #4 color #ff7e79 > open /Users/maryamfeghhi/Desktop/maps/fo-fli-.mrc Opened fo-fli-.mrc as #5, grid size 65,144,87, pixel 0.927,0.927,0.927, shown at level 0.81, step 1, values float32 > volume #5 color #941100 > open /Users/maryamfeghhi/Desktop/maps/segmentation-Eclosed/fl-ec.mrc Opened fl-ec.mrc as #6, grid size 74,133,86, pixel 0.927,0.927,0.927, shown at level 0.275, step 1, values float32 > close #6 > open /Users/maryamfeghhi/Desktop/maps/segmentation-Eclosed/FLI-EC-SINGLE.mrc Opened FLI-EC-SINGLE.mrc as #6, grid size 67,135,87, pixel 0.927,0.927,0.927, shown at level 7.23e-05, step 1, values float32 > close #6 > open /Users/maryamfeghhi/Desktop/maps/segmentation-Eclosed/fl-ec.mrc Opened fl-ec.mrc as #6, grid size 74,133,86, pixel 0.927,0.927,0.927, shown at level 0.275, step 1, values float32 > close #5 > close #6 > open /Users/maryamfeghhi/Desktop/maps/fo-fli-.mrc format mrc Opened fo-fli-.mrc as #5, grid size 65,144,87, pixel 0.927,0.927,0.927, shown at level 0.81, step 1, values float32 > open /Users/maryamfeghhi/Desktop/maps/my-ec.mrc format mrc Opened my-ec.mrc as #6, grid size 63,133,86, pixel 0.927,0.927,0.927, shown at level 6.73e-05, step 1, values float32 > view matrix models #4,1,0,0,-13.898,0,1,0,-26.574,0,0,1,-17.213 > view matrix models #4,1,0,0,-18.477,0,1,0,-15.707,0,0,1,-19.228 > volume #5 color #941100 > volume #5 level 0.4945 > volume #6 color #ff7e79 > volume #5 level 0.03506 > volume #4 color #ff2600 > volume #4 color #ff2f92 > volume #4 color #ff9300 > volume #4 color #945200 > volume #4 color #ff2600 > view matrix models #5,1,0,0,-11.736,0,1,0,15.462,0,0,1,34.661 > save /Users/maryamfeghhi/Desktop/image12.png supersample 3 > save /Users/maryamfeghhi/Desktop/image13.png supersample 3 > view matrix models #6,1,0,0,2.3552,0,1,0,8.9148,0,0,1,37.069 > view matrix models #5,1,0,0,-14.913,0,1,0,3.9097,0,0,1,36.429 > view matrix models #6,1,0,0,-0.41036,0,1,0,-1.5381,0,0,1,36.338 > view matrix models #6,1,0,0,-15.268,0,1,0,1.3605,0,0,1,37 > fitmap #5 inMap #6 Fit map fo-fli-.mrc in map my-ec.mrc using 10009 points correlation = 0.8282, correlation about mean = 0.6086, overlap = 5912 steps = 36, shift = 1.67, angle = 1.61 degrees Position of fo-fli-.mrc (#5) relative to my-ec.mrc (#6) coordinates: Matrix rotation and translation 0.99960325 0.02812157 0.00159000 -10.62805894 -0.02812068 0.99960437 -0.00057831 10.45347473 -0.00160563 0.00053337 0.99999857 0.73454948 Axis 0.01973028 0.05671656 -0.99819535 Axis point 367.05561041 382.86567687 0.00000000 Rotation angle (degrees) 1.61434831 Shift along axis -0.35003326 > fitmap #5 inMap #6 Fit map fo-fli-.mrc in map my-ec.mrc using 10009 points correlation = 0.8283, correlation about mean = 0.609, overlap = 5909 steps = 40, shift = 0.0122, angle = 0.105 degrees Position of fo-fli-.mrc (#5) relative to my-ec.mrc (#6) coordinates: Matrix rotation and translation 0.99958328 0.02886634 0.00000321 -10.43487954 -0.02886634 0.99958328 -0.00007209 10.54678672 -0.00000529 0.00007197 1.00000000 0.41814226 Axis 0.00249519 0.00014712 -0.99999688 Axis point 360.07544345 366.64934965 0.00000000 Rotation angle (degrees) 1.65415452 Shift along axis -0.44262626 > transparency #6.1 50 > select clear > transparency #6.1 10 > select clear > save /Users/maryamfeghhi/Desktop/image14.png supersample 3 > transparency #5.1 70 > select clear > transparency #6.1 0 > select clear > transparency #5.1 100 > transparency #5.1 70 > select clear > transparency #5.1 0 > transparency #5.1 80 > select clear > save /Users/maryamfeghhi/Desktop/image15.png supersample 3 > save /Users/maryamfeghhi/Desktop/image12.png supersample 3 > save /Users/maryamfeghhi/Desktop/image13.png supersample 3 > view matrix models #4,1,0,0,-16.654,0,1,0,-21.299,0,0,1,12.613 > fitmap #4 inMap #5 Fit map flit-ne.mrc in map fo-fli-.mrc using 3926 points correlation = 0.9157, correlation about mean = 0.5935, overlap = 7940 steps = 196, shift = 16.8, angle = 0.317 degrees Position of flit-ne.mrc (#4) relative to fo-fli-.mrc (#5) coordinates: Matrix rotation and translation 0.99954175 -0.02979268 -0.00535528 -3.98757337 0.02979933 0.99955522 0.00116739 -29.52640000 0.00531812 -0.00132644 0.99998498 -23.94560113 Axis -0.04115806 -0.17615295 0.98350198 Axis point 1095.71530979 -175.82008100 0.00000000 Rotation angle (degrees) 1.73608867 Shift along axis -18.18526283 > save /Users/maryamfeghhi/Desktop/image14.png supersample 3 > open /Users/maryamfeghhi/Desktop/maps/segmentation-Eclosed/or-ec.mrc Opened or-ec.mrc as #7, grid size 29,23,38, pixel 0.927,0.927,0.927, shown at level 0.932, step 1, values float32 > open /Users/maryamfeghhi/Desktop/maps/my-ec.mrc Opened my-ec.mrc as #8, grid size 63,133,86, pixel 0.927,0.927,0.927, shown at level 6.73e-05, step 1, values float32 > close #8 > open /Users/maryamfeghhi/Desktop/maps/or-ne.mrc Opened or-ne.mrc as #8, grid size 30,24,38, pixel 0.927,0.927,0.927, shown at level 2.25, step 1, values float32 > open /Users/maryamfeghhi/Desktop/maps/oran-f0.mrc Opened oran-f0.mrc as #9, grid size 32,22,39, pixel 0.927,0.927,0.927, shown at level 2.32, step 1, values float32 > open /Users/maryamfeghhi/Desktop/maps/myofil-ec.mrc Opened myofil-ec.mrc as #10, grid size 46,49,81, pixel 0.927,0.927,0.927, shown at level 0.769, step 1, values float32 > open /Users/maryamfeghhi/Desktop/maps/myo-ne.mrc Opened myo-ne.mrc as #11, grid size 48,49,79, pixel 0.927,0.927,0.927, shown at level 1.72, step 1, values float32 > open /Users/maryamfeghhi/Desktop/maps/fo-myofilin.mrc Opened fo-myofilin.mrc as #12, grid size 48,53,91, pixel 0.927,0.927,0.927, shown at level 1.72, step 1, values float32 > volume #7 level 0.2584 > volume #8 level 0.4298 > volume #9 level 0.5463 > volume #10 level 0.2516 > volume #11 level 0.5011 > volume #12 level 0.5379 > volume #10 color #d4fb79 > volume #10 color #fffc79 > volume #11 color #ffd479 > volume #12 color #fffb00 > transparency #12.1 50 > select clear > transparency #12.1 70 > select clear > view matrix models #12,1,0,0,54.292,0,1,0,-30.788,0,0,1,79.077 > view matrix models #9,1,0,0,73.086,0,1,0,-59.283,0,0,1,55.654 > view matrix models #9,1,0,0,77.497,0,1,0,-39.794,0,0,1,84.535 > view matrix models #10,1,0,0,61.393,0,1,0,-15.689,0,0,1,73.622 > view matrix models #10,1,0,0,49.134,0,1,0,-26.941,0,0,1,80.243 > view matrix models #12,1,0,0,47.243,0,1,0,-30.177,0,0,1,81.514 > fitmap #12 inMap #10 Fit map fo-myofilin.mrc in map myofil-ec.mrc using 7431 points correlation = 0.8793, correlation about mean = 0.612, overlap = 6139 steps = 68, shift = 5.44, angle = 1.41 degrees Position of fo-myofilin.mrc (#12) relative to myofil-ec.mrc (#10) coordinates: Matrix rotation and translation 0.99971688 0.02373584 0.00166610 -9.01613317 -0.02372462 0.99969765 -0.00646135 10.70713230 -0.00181896 0.00641999 0.99997774 -1.51175686 Axis 0.26128042 0.07068962 -0.96267103 Axis point 446.84795244 383.60317453 0.00000000 Rotation angle (degrees) 1.41250715 Shift along axis -0.14353143 > view matrix models #7,1,0,0,78.558,0,1,0,-15.459,0,0,1,92.303 > view matrix models #7,1,0,0,76.542,0,1,0,-41.814,0,0,1,86.531 > view matrix models #7,1,0,0,78.53,0,1,0,-41.75,0,0,1,85.378 > view matrix models #9,1,0,0,77.678,0,1,0,-39.858,0,0,1,84.749 > view matrix models #9,1,0,0,69.076,0,1,0,-32.954,0,0,1,89.569 > view matrix models #7,1,0,0,70.2,0,1,0,-34.929,0,0,1,90.57 > fitmap #7 inMap #9 Fit map or-ec.mrc in map oran-f0.mrc using 2580 points correlation = 0.9176, correlation about mean = 0.7007, overlap = 2038 steps = 84, shift = 1.55, angle = 1.09 degrees Position of or-ec.mrc (#7) relative to oran-f0.mrc (#9) coordinates: Matrix rotation and translation 0.99995970 -0.00895142 0.00068893 3.36149291 0.00893857 0.99981858 0.01681961 -10.08730232 -0.00083937 -0.01681277 0.99985830 6.02364574 Axis -0.88215803 0.04008634 0.46924438 Axis point 0.00000000 368.36072932 602.41328975 Rotation angle (degrees) 1.09227031 Shift along axis -0.54316909 > select clear > select #9 2 models selected > volume #7 color #945200 > volume #7 color #ff9300 > volume #9 color #ff7e79 > volume #9 color #ffd479 > volume #9 color #ff7e79 > select clear > volume #10 color #fec22c > volume #9 color #f2bb7d > select clear > volume #8 color #fb7721 > view matrix models #8,1,0,0,49.561,0,1,0,-57.432,0,0,1,63.014 > view matrix models #8,1,0,0,54.313,0,1,0,-55.294,0,0,1,64.627 > view matrix models #8,1,0,0,52.582,0,1,0,-55.548,0,0,1,65.492 > fitmap #8 inMap #9 Fit map or-ne.mrc in map oran-f0.mrc using 2468 points correlation = 0.9322, correlation about mean = 0.7321, overlap = 4748 steps = 52, shift = 2.92, angle = 1.29 degrees Position of or-ne.mrc (#8) relative to oran-f0.mrc (#9) coordinates: Matrix rotation and translation 0.99978697 -0.01378089 0.01536579 -16.05478588 0.01364104 0.99986492 0.00916878 -27.31900818 -0.01549007 -0.00895723 0.99983990 -14.53214978 Axis -0.40204663 0.68440284 0.60823619 Axis point -126.85412293 0.00000000 1594.67730810 Rotation angle (degrees) 1.29168077 Shift along axis -21.08141345 > select clear > view matrix models #11,1,0,0,29.426,0,1,0,-18.447,0,0,1,63.835 > view matrix models #11,1,0,0,24.483,0,1,0,-43.389,0,0,1,62.018 > view matrix models #11,1,0,0,32.482,0,1,0,-41.29,0,0,1,59.311 > view matrix models #11,1,0,0,33.636,0,1,0,-43.588,0,0,1,57.911 > fitmap #12 inMap #11 Fit map fo-myofilin.mrc in map myo-ne.mrc using 7431 points correlation = 0.8853, correlation about mean = 0.6895, overlap = 1.458e+04 steps = 56, shift = 2.2, angle = 0.965 degrees Position of fo-myofilin.mrc (#12) relative to myo-ne.mrc (#11) coordinates: Matrix rotation and translation 0.99979751 0.01521682 0.01316744 8.40202039 -0.01501525 0.99977060 -0.01527359 28.32258203 -0.01339684 0.01507279 0.99979665 20.71959827 Axis 0.60206545 0.52702944 -0.59979761 Axis point 0.00000000 -1653.55384432 1618.39467212 Rotation angle (degrees) 1.44411505 Shift along axis 7.55783507 > save /Users/maryamfeghhi/Desktop/image15.png supersample 3 > save /Users/maryamfeghhi/Desktop/image16.png supersample 3 > fitmap #10 inMap #12 Fit map myofil-ec.mrc in map fo-myofilin.mrc using 7357 points correlation = 0.9096, correlation about mean = 0.7372, overlap = 6143 steps = 68, shift = 2.18, angle = 0.951 degrees Position of myofil-ec.mrc (#10) relative to fo-myofilin.mrc (#12) coordinates: Matrix rotation and translation 0.99971143 -0.02392654 -0.00214063 9.43450032 0.02394037 0.99969105 0.00668315 -10.61420640 0.00198006 -0.00673247 0.99997538 1.60240193 Axis -0.26894785 -0.08260891 0.95960555 Axis point 448.78516209 387.51701362 0.00000000 Rotation angle (degrees) 1.42915827 Shift along axis -0.12288678 > save /Users/maryamfeghhi/Desktop/image17.png supersample 3 > open /Users/maryamfeghhi/Desktop/maps/Newly-emerged/Heads- > Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc Opened Heads-Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc as #13, grid size 421,421,688, pixel 0.927,0.927,0.927, shown at level 0.0717, step 2, values float32 > volume #13 step 1 > volume #13 level 0.04336 > ui tool show ""Map Filter"" > volume gaussian #13 sDev 1.1 Opened Heads-Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian as #14, grid size 421,421,688, pixel 0.927,0.927,0.927, shown at step 1, values float32 > volume #13 level 0.03583 > volume #14 level 0.02603 > surface dust #14 size 9.27 > volume #14 level 0.02261 > surface dust #14 size 9.27 > select clear > volume #14 level 0.0213 > surface dust #14 size 9.27 > volume #14 level 0.01762 > volume gaussian #13 sDev 1.5 modelId #14 Opened Heads-Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian as #14, grid size 421,421,688, pixel 0.927,0.927,0.927, shown at step 1, values float32 > volume #14 level 0.02485 > surface dust #14 size 9.27 > open /Users/maryamfeghhi/Desktop/maps/segmentation-Eclosed/Heads-N- > Eclosed_122017.mrc Opened Heads-N-Eclosed_122017.mrc as #15, grid size 407,410,669, pixel 0.927,0.927,0.927, shown at level 0.138, step 2, values float32 > volume #15 step 1 > volume #15 level 0.08707 > surface dust #14 size 9.27 > surface dust #15 size 9.27 > select clear > surface dust #14 size 9.27 > surface dust #15 size 9.27 Drag select of 14 Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian , 15 Heads-N-Eclosed_122017.mrc > view matrix models #15,1,0,0,14.275,0,1,0,12.554,0,0,1,19.054 > fitmap #14 inMap #12 Fit map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian in map fo-myofilin.mrc using 4658813 points correlation = 0, correlation about mean = 0, overlap = 0 steps = 24, shift = 0, angle = 0 degrees Position of Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#14) relative to fo-myofilin.mrc (#12) coordinates: Matrix rotation and translation 0.99979751 -0.01501525 -0.01339684 -41.20488563 0.01521682 0.99977060 0.01507279 13.43716187 0.01316744 -0.01527359 0.99979665 -79.40115237 Axis -0.60206545 -0.52702944 0.59979761 Axis point 0.00000000 -4025.70844363 92.66184011 Rotation angle (degrees) 1.44411505 Shift along axis -29.89836342 > fitmap #14 inMap #12 Fit map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian in map fo-myofilin.mrc using 4658813 points correlation = 0, correlation about mean = 0, overlap = 0 steps = 24, shift = 0, angle = 0 degrees Position of Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#14) relative to fo-myofilin.mrc (#12) coordinates: Matrix rotation and translation 0.99979751 -0.01501525 -0.01339684 -41.20488563 0.01521682 0.99977060 0.01507279 13.43716187 0.01316744 -0.01527359 0.99979665 -79.40115237 Axis -0.60206545 -0.52702944 0.59979761 Axis point 0.00000000 -4025.70844363 92.66184011 Rotation angle (degrees) 1.44411505 Shift along axis -29.89836342 > volume #15 level 0.07012 > fitmap #14 inMap #12 Fit map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian in map fo-myofilin.mrc using 4658813 points correlation = 0, correlation about mean = 0, overlap = 0 steps = 24, shift = 0, angle = 0 degrees Position of Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#14) relative to fo-myofilin.mrc (#12) coordinates: Matrix rotation and translation 0.99979751 -0.01501525 -0.01339684 -41.20488563 0.01521682 0.99977060 0.01507279 13.43716187 0.01316744 -0.01527359 0.99979665 -79.40115237 Axis -0.60206545 -0.52702944 0.59979761 Axis point 0.00000000 -4025.70844363 92.66184011 Rotation angle (degrees) 1.44411505 Shift along axis -29.89836342 > transparency #14.1#15.1 70 > select clear > transparency #14.1 10 > select clear > surface dust #14 size 9.27 > surface dust #15 size 9.27 > ui tool show ""Map Filter"" > volume gaussian #15 sDev 1.5 Opened Heads-N-Eclosed_122017.mrc gaussian as #16, grid size 407,410,669, pixel 0.927,0.927,0.927, shown at step 1, values float32 > select clear > transparency #16.1 60 > select clear > volume #16 color #aefaf066 > volume #16 level 0.02401 > ui tool show ""Color Actions"" > volume #14 color #a786bfe6 > volume #14 color #005493 > volume #15 level 0.04188 > transparency #14.1#16.1 50 > select clear > volume #14 level 0.03016 > volume #16 level 0.01779 > fitmap #14 inMap #16 Fit map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian in map Heads-N-Eclosed_122017.mrc gaussian using 4092104 points correlation = 0.8053, correlation about mean = 0.5349, overlap = 2.212e+04 steps = 120, shift = 6.12, angle = 5.56 degrees Position of Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#14) relative to Heads-N-Eclosed_122017.mrc gaussian (#16) coordinates: Matrix rotation and translation 0.99528964 -0.09694541 0.00034636 20.53383218 0.09694563 0.99528945 -0.00067521 -52.06410043 -0.00027927 0.00070561 0.99999971 -19.36705936 Axis 0.00712141 0.00322660 0.99996944 Axis point 545.47214401 186.72914303 0.00000000 Rotation angle (degrees) 5.56347738 Shift along axis -19.38822782 > volume #14 level 0.03309 > volume #16 level -1.903e-16 > volume #16 level 0.003953 > volume #14 level 0.03505 > transparency #16.1 30 > select clear > transparency #16.1 70 > select clear > transparency #16.1 70 > select clear > fitmap #16 inMap #14 Fit map Heads-N-Eclosed_122017.mrc gaussian in map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian using 6563146 points correlation = 0.7491, correlation about mean = 0.4955, overlap = 2.335e+04 steps = 56, shift = 0.342, angle = 0.804 degrees Position of Heads-N-Eclosed_122017.mrc gaussian (#16) relative to Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#14) coordinates: Matrix rotation and translation 0.99655210 0.08296910 -0.00018757 -10.89898185 -0.08296894 0.99655187 0.00072943 48.34918759 0.00024745 -0.00071136 0.99999972 19.03389638 Axis -0.00868235 -0.00262149 -0.99995887 Axis point 575.59968264 157.27688481 0.00000000 Rotation angle (degrees) 4.75944192 Shift along axis -19.06523154 > select clear > volume #15 level 0.03229 > volume #14 level 0.03818 > volume #14 level 0.03994 > select clear > transparency #16.1 90 > select clear > volume #14 level 0.04366 > ui mousemode right ""map eraser"" Can only have one displayed volume when erasing > volume erase #16 center 372.07,370.12,611.71 radius 206.82 > volume erase #16 center 371.61,380.04,622.88 radius 206.82 > volume erase #16 center 367.95,367.07,147.41 radius 206.82 > volume erase #14 center 367.95,367.07,147.41 radius 206.64 > volume erase #14 center 362.7,371.16,626.25 radius 206.64 > volume erase #14 center 410.84,362.38,621.41 radius 206.64 > volume erase #16 center 352.23,285.82,632.84 radius 206.51 > volume erase #16 center 292.01,354.79,645.35 radius 206.51 > transparency #16.1 90 > select clear > transparency #14.1 10 > select clear > lighting shadows true > graphics silhouettes true > lighting simple > lighting soft > lighting full > lighting simple > select clear > transparency #16.1 100 > select clear > transparency #16.1 60 > select clear > transparency #16.1 50 > select clear > volume gaussian #15 sDev 2 modelId #16 Opened Heads-N-Eclosed_122017.mrc gaussian as #16, grid size 407,410,669, pixel 0.927,0.927,0.927, shown at step 1, values float32 > volume #16 level 0.02942 > surface dust #14 size 9.27 > surface dust #16 size 9.27 > volume #16 level 0.0233 > volume erase #16 center 364.58,368.2,128.93 radius 206.2 > volume erase #16 center 431.86,340.3,114.5 radius 206.2 > volume erase #16 center 373.56,371.25,604.46 radius 206.2 > select clear > open /Users/maryamfeghhi/Desktop/maps/foragers2024/Heads.mrc Opened Heads.mrc as #18, grid size 361,361,661, pixel 0.927,0.927,0.927, shown at level 0.151, step 2, values float32 > volume #18 step 1 > volume #18 level 0.0782 > volume erase #18 center 339.74,341.79,99.157 radius 206.19 Opened Heads.mrc copy as #19, grid size 361,361,661, pixel 0.927,0.927,0.927, shown at step 1, values float32 > volume erase #19 center 387.46,311.67,99.873 radius 206.19 > volume erase #19 center 357.3,414.7,80.595 radius 206.19 > volume erase #19 center 383.14,415.7,611 radius 206.19 > volume erase #19 center 395.03,286.45,614.68 radius 206.19 > volume erase #19 center 282.07,278.63,616.44 radius 206.19 > volume #18 level 0.06415 > volume #19 level 0.06277 > volume #19 color #00fdff > volume #19 color #bcdffd > volume #16 color #d4f88d80 > volume #16 color #d6d6d6 > fitmap #16 inMap #19 Fit map Heads-N-Eclosed_122017.mrc gaussian in map Heads.mrc copy using 1290513 points correlation = 0.9529, correlation about mean = 0.9369, overlap = 1.535e+04 steps = 176, shift = 27, angle = 0.0873 degrees Position of Heads-N-Eclosed_122017.mrc gaussian (#16) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation 0.99999884 -0.00102947 -0.00112106 0.70707786 0.00102940 0.99999947 -0.00006315 -0.44463380 0.00112112 0.00006200 0.99999937 -0.35501119 Axis 0.04107700 -0.73595389 0.67578439 Axis point 387.14962612 0.00000000 626.05938366 Rotation angle (degrees) 0.08727969 Shift along axis 0.11636360 > transparency #16.1 70 > select clear > save /Users/maryamfeghhi/Desktop/image18.png supersample 3 > movie record > turn y 2 180 > wait 180 > movie encode /Users/maryamfeghhi/Desktop/movie1.mp4 Movie saved to /Users/maryamfeghhi/Desktop/movie1.mp4 > graphics silhouettes false > lighting shadows true > lighting shadows false > lighting soft > lighting simple > lighting soft > lighting simple > volume #!16,19 style surface > transparency #16.1#19.1 0 > transparency #16.1#19.1 50 > volume #!16,19 style surface > transparency #16.1#19.1 0 > transparency #16.1#19.1 50 > transparency #16.1#19.1 0 > transparency #16.1#19.1 50 > transparency #16.1 70 > transparency sel 0 > transparency sel 50 > select clear > transparency #16.1#19.1 0 > transparency #16.1#19.1 50 > volume #!16,19 style surface > volume #!16,19 showOutlineBox true > volume #!16,19 style image > volume #!16,19 style mesh > volume #!16,19 showOutlineBox false > volume #!16,19 style mesh > volume #!16,19 style surface > lighting flat > lighting full > lighting soft > lighting simple > graphics silhouettes false > graphics silhouettes true > lighting shadows true > lighting full > volume #!16,19 step 1 > volume #!16,19 step 2 > volume #!16,19 step 1 > volume #!16,19 step 2 > volume #!16,19 showOutlineBox true > volume #!16,19 showOutlineBox false > transparency #16.1#19.1 0 > transparency #16.1#19.1 50 > transparency #16.1#19.1 0 > transparency #16.1 80 > select clear > save /Users/maryamfeghhi/Desktop/image19.png supersample 3 > volume #16 change image level -9.714e-17,0 level 0.03517,0.8 level 0.3168,1 > fitmap #19 inMap #14 Fit map Heads.mrc copy in map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian using 97906 points correlation = 0.8163, correlation about mean = 0.423, overlap = 801.7 steps = 184, shift = 26.9, angle = 0.937 degrees Position of Heads.mrc copy (#19) relative to Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#14) coordinates: Matrix rotation and translation 0.99357251 0.11319751 -0.00000512 -20.39213785 -0.11319751 0.99357251 -0.00004216 60.21391513 0.00000032 0.00004246 1.00000000 19.16735025 Axis 0.00037377 -0.00002403 -0.99999993 Axis point 520.03070828 209.61119525 0.00000000 Rotation angle (degrees) 6.49967134 Shift along axis -19.17641755 > transparency #19.1 70 > select clear > graphics silhouettes false > graphics silhouettes true > lighting soft > lighting simple > lighting full > lighting soft > lighting simple > transparency sel 0 > select clear > transparency #19.1 80 > select clear > transparency #19.1 50 > select clear > surface dust #14 size 9.27 > surface dust #19 size 9.27 > select clear > transparency #19.1 90 > transparency #19.1 70 > select clear Unsupported scale factor (0.000000) detected on Display0 QPainter::begin: Paint device returned engine == 0, type: 2 QPainter::translate: Painter not active QPainter::setPen: Painter not active QPainter::setBrush: Painter not active QPainter::drawPoints: Painter not active QPainter::end: Painter not active, aborted QPainter::begin: Paint device returned engine == 0, type: 2 QPainter::translate: Painter not active QPainter::setPen: Painter not active QPainter::setBrush: Painter not active QPainter::drawPoints: Painter not active QPainter::end: Painter not active, aborted Unsupported scale factor (0.000000) detected on Display0 > transparency #19.1 60 > select clear > transparency sel 0 > select clear > transparency #19.1 60 > select clear > volume #19 change image level 0,0 level 0.03765,0.8 level 0.3765,1 > select clear > volume #19 step 1 > select clear > transparency #19.1 70 > select clear > fitmap #19 inMap #14 Fit map Heads.mrc copy in map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian using 783640 points correlation = 0.8166, correlation about mean = 0.423, overlap = 6417 steps = 48, shift = 0.0107, angle = 0.0182 degrees Position of Heads.mrc copy (#19) relative to Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#14) coordinates: Matrix rotation and translation 0.99360846 0.11288149 -0.00000461 -20.29260542 -0.11288149 0.99360846 -0.00004266 60.08835991 -0.00000024 0.00004291 1.00000000 19.15670396 Axis 0.00037906 -0.00001934 -0.99999993 Axis point 520.46654607 209.17444718 0.00000000 Rotation angle (degrees) 6.48144842 Shift along axis -19.16555687 > fitmap #19 inMap #14 Fit map Heads.mrc copy in map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian using 783640 points correlation = 0.8166, correlation about mean = 0.4231, overlap = 6417 steps = 48, shift = 0.0256, angle = 0.00525 degrees Position of Heads.mrc copy (#19) relative to Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#14) coordinates: Matrix rotation and translation 0.99361387 0.11283389 0.00000358 -20.27936586 -0.11283389 0.99361386 0.00003496 60.03081686 0.00000039 -0.00003514 1.00000000 19.16112822 Axis -0.00031060 0.00001416 -0.99999995 Axis point 520.18917257 209.22182869 0.00000000 Rotation angle (degrees) 6.47870330 Shift along axis -19.15397870 > select clear > select #19 3 models selected > transparency #19.1 80 > select clear > surface style #19 mesh > select clear > transparency #19.1 80 > select clear > lighting simple > lighting soft > lighting full > select clear > surface style #19 solid > select clear > transparency #19.1 70 > select clear > volume #19 level 0 > volume #19 level 0.001804 > select clear > select #19 3 models selected > select clear > volume #14 level 0.05007 > select clear > graphics silhouettes false > graphics silhouettes true > select clear > volume #14 level 0.05235 > select clear > select #14 2 models selected > transparency #14.1 50 > select clear > transparency #19.1 20 > select clear > transparency #14.1 20 > select clear > save /Users/maryamfeghhi/Desktop/image20.png supersample 3 > lighting soft > lighting flat > lighting shadows true intensity 0.5 > lighting shadows false > lighting simple > lighting soft > lighting simple > graphics silhouettes false > graphics silhouettes true > transparency #14.1#19.1 0 > transparency #14.1#19.1 50 > transparency #14.1#19.1 0 > select clear > transparency sel 50 > select clear > save /Users/maryamfeghhi/Desktop/image21.png supersample 3 > graphics silhouettes false > graphics silhouettes true > select clear > transparency #9.1 80 > transparency #9.1 50 > transparency #9.1 40 > select clear > save /Users/maryamfeghhi/Desktop/image1.png supersample 3 > volume #11 color #fffc79 > volume #11 color #fffb00 > volume #11 color #929000 > volume #11 color #d4fb79 > volume #11 color #d8fa92 > volume #11 color #b3fa78 > volume #11 color #fae209 > volume #11 color #faf709 > volume #11 color #faf808 > volume #11 color #fa9410 > volume #11 color #c9fa15 > volume #12 color #feee814c > volume #12 color #fee97d4c > volume #12 color #fef0824c > volume #12 color #fef0824d > select #12 2 models selected > transparency #12.1 80 > select clear > volume #12 level 0.06206 > select #12 2 models selected > transparency #12.1 70 > select clear > volume #11 level 0.5633 > lighting shadows true > lighting shadows false > graphics silhouettes false > graphics silhouettes true > select clear > graphics silhouettes false > graphics silhouettes true > select clear > volume #11 level 0.9136 > save /Users/maryamfeghhi/Desktop/image2.png supersample 3 > volume #7 color #f4b44e > volume #7 color #f48553 > volume #7 color #f47c50 > volume #7 color #f46549 > volume #7 color #d3f4ac > volume #7 color #f34d1c > volume #7 color #f37c00 > volume #7 color #cce9bf > volume #7 color #e9aa00 > volume #10 color #f7e8a4 > volume #10 color #f7e3b0 > volume #10 color #f4f750 > save /Users/maryamfeghhi/Desktop/image3.png supersample 3 > fitmap #12 inMap #6 Fit map fo-myofilin.mrc in map my-ec.mrc using 7727 points correlation = 0, correlation about mean = 0, overlap = 0 steps = 24, shift = 0, angle = 0 degrees Position of fo-myofilin.mrc (#12) relative to my-ec.mrc (#6) coordinates: Matrix rotation and translation 0.99979751 0.01521682 0.01316744 57.30561921 -0.01501525 0.99977060 -0.01527359 -16.62602972 -0.01339684 0.01507279 0.99979665 41.63015539 Axis 0.60206545 0.52702944 -0.59979761 Axis point 0.00000000 -2807.04434589 -1072.94577748 Rotation angle (degrees) 1.44411505 Shift along axis 0.76965841 > ui mousemode right ""move picked models"" > view matrix models > #12,0.9998,0.015217,0.013167,41.441,-0.015015,0.99977,-0.015274,-16.376,-0.013397,0.015073,0.9998,79.919 > view matrix models > #12,0.9998,0.015217,0.013167,41.59,-0.015015,0.99977,-0.015274,-16.938,-0.013397,0.015073,0.9998,80.416 > fitmap #12 inMap #6 Fit map fo-myofilin.mrc in map my-ec.mrc using 7727 points correlation = 0, correlation about mean = 0, overlap = 0 steps = 24, shift = 0, angle = 0 degrees Position of fo-myofilin.mrc (#12) relative to my-ec.mrc (#6) coordinates: Matrix rotation and translation 0.99979751 0.01521682 0.01316744 56.85850243 -0.01501525 0.99977060 -0.01527359 -18.29847315 -0.01339684 0.01507279 0.99979665 43.41599737 Axis 0.60206545 0.52702944 -0.59979761 Axis point 0.00000000 -2837.55078236 -1105.32258902 Rotation angle (degrees) 1.44411505 Shift along axis -1.45210583 > fitmap #12 inMap #10 Fit map fo-myofilin.mrc in map myofil-ec.mrc using 7727 points correlation = 0.8776, correlation about mean = 0.615, overlap = 6176 steps = 60, shift = 2.5, angle = 0.0175 degrees Position of fo-myofilin.mrc (#12) relative to myofil-ec.mrc (#10) coordinates: Matrix rotation and translation 0.99971418 0.02384624 0.00170670 -9.07190766 -0.02383443 0.99969392 -0.00663198 10.78774747 -0.00186432 0.00658941 0.99997655 -1.58040725 Axis 0.26651468 0.07198394 -0.96113903 Axis point 448.04423172 384.43726979 0.00000000 Rotation angle (degrees) 1.42132479 Shift along axis -0.12226093 > save /Users/maryamfeghhi/Desktop/image4.png supersample 3 > save /Users/maryamfeghhi/Desktop/image5.png supersample 3 > volume #11 color #f6d648 > volume #11 color #f6d549 > save /Users/maryamfeghhi/Desktop/image6.png supersample 3 > volume #11 level 0.4841 > save /Users/maryamfeghhi/Desktop/image7.png supersample 3 > volume #3 color #65b4b899 > volume #3 color #8af6fb99 > volume #2 color #3c649e99 > volume #2 color #38529e99 > volume #1 color #4922fd99 > volume #1 color #3815fd99 > volume #1 color #1d34fd99 > volume #1 color #111d9099 > volume #2 color #4273a999 > volume #2 color #4387a999 > volume #1 color #233cc699 > volume #1 color #223abf99 > volume #1 color #1a38bf99 > volume #1 color #1835b299 > save /Users/maryamfeghhi/Desktop/image8.png supersample 3 > save /Users/maryamfeghhi/Desktop/image9.png supersample 3 > save /Users/maryamfeghhi/Desktop/image10.png supersample 3 > volume #19 color #4681fb80 > volume #19 color #3c50fb80 > volume #19 color #3a4bfb80 > volume #19 color #3a4cfb80 > volume #19 color #1835b2 > volume #16 color white > volume #16 color #8af6fb > volume #14 color #4387a9 > select clear > transparency sel 50 > select clear > save /Users/maryamfeghhi/Desktop/image11.png supersample 3 > graphics silhouettes false > graphics silhouettes true > transparency sel 50 > select clear > fitmap #16 inMap #19 Fit map Heads-N-Eclosed_122017.mrc gaussian in map Heads.mrc copy using 161385 points correlation = 0.9529, correlation about mean = 0.9369, overlap = 1919 steps = 156, shift = 26.9, angle = 0.916 degrees Position of Heads-N-Eclosed_122017.mrc gaussian (#16) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation 0.99999882 -0.00104077 -0.00113045 0.71181211 0.00104072 0.99999946 -0.00005291 -0.45005198 0.00113050 0.00005174 0.99999936 -0.36460772 Axis 0.03403270 -0.73527488 0.67691405 Axis point 387.73770799 0.00000000 626.00724885 Rotation angle (degrees) 0.08809140 Shift along axis 0.10832871 > transparency sel 0 > transparency sel 50 > select clear > transparency sel 0 > transparency sel 50 > transparency sel 0 > transparency sel 50 > transparency #16.1 90 > select clear > volume #!16,19 style surface > transparency #16.1#19.1 0 > transparency #16.1#19.1 50 > select clear > transparency sel 0 > transparency sel 50 > transparency #16.1 80 > select clear > lighting simple > lighting soft > lighting full > lighting shadows false > lighting shadows true > graphics silhouettes false > graphics silhouettes true > graphics silhouettes false > graphics silhouettes true > transparency #16.1#19.1 0 > transparency #16.1#19.1 50 > volume #!16,19 style image > volume #!16,19 style mesh > volume #!16,19 style surface > transparency #16.1#19.1 0 > transparency #16.1#19.1 50 > volume #!16,19 style image > volume #!16,19 style surface > lighting simple > select clear > transparency #19.1 30 > select clear > transparency sel 0 > transparency sel 50 > transparency #16.1 80 > select clear > transparency #16.1#19.1 0 > transparency #16.1#19.1 50 > transparency #16.1#19.1 0 > transparency #16.1#19.1 50 > transparency #16.1#19.1 0 > transparency #16.1#19.1 50 > transparency #16.1#19.1 0 > transparency #16.1#19.1#!16,19 80 > select clear > transparency #19.1 20 > select clear > transparency sel 0 > transparency sel 50 > select #16 3 models selected > select clear > transparency sel 0 > volume sel style surface > transparency sel 50 > transparency sel 0 > transparency sel 50 > volume sel showOutlineBox true > volume sel showOutlineBox false > transparency sel 0 > transparency sel 50 > transparency sel 0 > transparency sel 50 > volume #16 step 1 > select clear > volume sel style mesh > volume sel style surface > transparency sel 0 > transparency sel 50 > select clear > volume #16 level 0.04227 > select clear > transparency sel 0 > transparency sel 50 > lighting shadows true > lighting shadows false > graphics silhouettes false > graphics silhouettes true > transparency sel 0 > transparency sel 50 > surface style #16 solid > transparency #16.1 80 > select clear > view matrix models > #16,0.99989,0.014935,-0.00078461,-18.053,-0.014936,0.99989,-0.00067492,-90.157,0.00077444,0.00068656,1,47.049 > transparency sel 0 > transparency sel 50 > transparency #16.1#19.1#!16,19 100 > transparency #16.1#19.1#!16,19 10 > select clear > transparency #16.1 50 > transparency #16.1 70 > select clear > view matrix models > #16,0.99989,0.014935,-0.00078461,1.4643,-0.014936,0.99989,-0.00067492,-11.872,0.00077444,0.00068656,1,-20.961 > view matrix models > #19,0.99987,0.015976,0.00034653,-21.487,-0.015976,0.99987,-0.00064007,-13.585,-0.00035672,0.00063446,1,-12.725 > view matrix models > #19,0.99987,0.015976,0.00034653,-11.758,-0.015976,0.99987,-0.00064007,-1.338,-0.00035672,0.00063446,1,-2.9222 > view matrix models > #19,0.99987,0.015976,0.00034653,3.9877,-0.015976,0.99987,-0.00064007,-3.8929,-0.00035672,0.00063446,1,-21.801 > fitmap #16 inMap #19 Fit map Heads-N-Eclosed_122017.mrc gaussian in map Heads.mrc copy using 1031772 points correlation = 0.9628, correlation about mean = 0.9223, overlap = 1.533e+04 steps = 76, shift = 8.27, angle = 0.00665 degrees Position of Heads-N-Eclosed_122017.mrc gaussian (#16) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation 0.99999899 -0.00095888 -0.00105159 0.65994450 0.00095880 0.99999954 -0.00007588 -0.42048550 0.00105166 0.00007487 0.99999944 -0.34754653 Axis 0.05289007 -0.73791948 0.67281311 Axis point 402.04281795 0.00000000 621.58059958 Rotation angle (degrees) 0.08165355 Shift along axis 0.11135510 > select clear > volume sel step 1 > volume sel step 2 > volume sel step 1 > transparency sel 0 > transparency sel 50 > volume sel style image > volume sel style mesh > volume sel style surface > fitmap #16 inMap #19 Fit map Heads-N-Eclosed_122017.mrc gaussian in map Heads.mrc copy using 1031772 points correlation = 0.9628, correlation about mean = 0.9223, overlap = 1.533e+04 steps = 28, shift = 0.0168, angle = 0.006 degrees Position of Heads-N-Eclosed_122017.mrc gaussian (#16) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation 0.99999908 -0.00086047 -0.00105024 0.62406083 0.00086043 0.99999963 -0.00003977 -0.39890153 0.00105027 0.00003886 0.99999945 -0.31745232 Axis 0.02894456 -0.77321806 0.63347932 Axis point 378.20373623 0.00000000 590.41953757 Rotation angle (degrees) 0.07782454 Shift along axis 0.12540155 > fitmap #16 inMap #19 Fit map Heads-N-Eclosed_122017.mrc gaussian in map Heads.mrc copy using 1031772 points correlation = 0.9628, correlation about mean = 0.9223, overlap = 1.533e+04 steps = 28, shift = 0.0144, angle = 0.00382 degrees Position of Heads-N-Eclosed_122017.mrc gaussian (#16) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation 0.99999902 -0.00092420 -0.00104898 0.64676460 0.00092414 0.99999957 -0.00005915 -0.41461386 0.00104903 0.00005818 0.99999945 -0.33823919 Axis 0.04192294 -0.74968325 0.66046763 Axis point 394.86995555 0.00000000 611.62023928 Rotation angle (degrees) 0.08017202 Shift along axis 0.11454730 > select clear > transparency #16.1 60 > select clear > transparency #16.1#19.1 0 > surface dust #16 size 9.27 > volume #16 level 0.01496 > volume #19 level 0.08928 > select clear > transparency sel 50 > select clear > view matrix models #17,1,0,0,263.43,0,1,0,509.93,0,0,1,545.8 > view matrix models #17,1,0,0,284.98,0,1,0,520.21,0,0,1,188.2 > volume erase #16 center 284.98,520.21,188.2 radius 40.621 > fitmap #16 inMap #19 Fit map Heads-N-Eclosed_122017.mrc gaussian in map Heads.mrc copy using 1461186 points correlation = 0.9498, correlation about mean = 0.9378, overlap = 1.536e+04 steps = 44, shift = 0.0104, angle = 0.00975 degrees Position of Heads-N-Eclosed_122017.mrc gaussian (#16) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation 0.99999879 -0.00107710 -0.00112294 0.72484675 0.00107702 0.99999942 -0.00006856 -0.45540305 0.00112301 0.00006735 0.99999937 -0.36834927 Axis 0.04363124 -0.72102047 0.69153872 Axis point 393.17553672 0.00000000 640.97649552 Rotation angle (degrees) 0.08923724 Shift along axis 0.10525310 > save /Users/maryamfeghhi/Desktop/image12.png supersample 3 > save /Users/maryamfeghhi/Desktop/image13.png supersample 3 > save /Users/maryamfeghhi/Desktop/image14.png supersample 3 > volume #2 level 0.5879 > volume #14 level 0.03291 > surface dust #14 size 9.27 > surface dust #19 size 9.27 > view matrix models #17,1,0,0,223.2,0,1,0,573.18,0,0,1,484.39 > view matrix models #17,1,0,0,336.06,0,1,0,543.97,0,0,1,507.71 > view matrix models #17,1,0,0,326.2,0,1,0,531.06,0,0,1,500.34 > volume erase #14 center 326.2,531.06,500.34 radius 40.18 > view matrix models #17,1,0,0,177.96,0,1,0,379.97,0,0,1,461.27 > view matrix models #17,1,0,0,218.94,0,1,0,348.44,0,0,1,503.22 > volume erase #14 center 218.94,348.44,503.22 radius 40.18 > volume #14 level 0.0352 > volume #14 level 0.03543 > fitmap #14 inMap #19 Fit map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian in map Heads.mrc copy using 821108 points correlation = 0.8145, correlation about mean = 0.5313, overlap = 6087 steps = 288, shift = 47, angle = 1.46 degrees Position of Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#14) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation 0.99040730 -0.13817876 0.00002663 37.57915950 0.13817876 0.99040730 0.00001402 -65.65764649 -0.00002831 -0.00001020 1.00000000 -19.65629613 Axis -0.00008765 0.00019879 0.99999998 Axis point 491.64601879 237.81674809 0.00000000 Rotation angle (degrees) 7.94247308 Shift along axis -19.67264138 > select clear > transparency sel 50 > select clear > volume #19 level 0.006313 > volume #14 level 0.04778 > select clear > transparency #19.1 50 > select clear > volume #19 level 0.003607 > select clear > view matrix models > #14,0.99249,-0.12234,0.00037338,35.502,0.12234,0.99249,-0.00062648,-71.373,-0.00029394,0.00066746,1,-41.093 > fitmap #14 inMap #19 Fit map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian in map Heads.mrc copy using 587996 points correlation = 0.8503, correlation about mean = 0.4801, overlap = 5729 steps = 72, shift = 5.24, angle = 1.56 degrees Position of Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#14) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation 0.98627834 -0.16509101 -0.00003389 49.20275048 0.16509101 0.98627834 0.00000838 -74.16479007 0.00003204 -0.00001386 1.00000000 -20.13817087 Axis -0.00006738 -0.00019965 0.99999998 Axis point 470.77851572 258.89676644 0.00000000 Rotation angle (degrees) 9.50252192 Shift along axis -20.12667865 > volume #19 level 0.003156 > select clear > transparency #19.1 40 > select clear > transparency #14.1 60 > select clear > transparency #14.1 30 > select clear > vop gaussian #14 sdev 2.78 Opened Heads-Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian as #20, grid size 421,421,688, pixel 0.927,0.927,0.927, shown at step 1, values float32 > select clear > volume #20 level 0.02176 > select clear > volume #20 color #b3b3b3 > volume #20 color #4387a9 > volume #14 level 0.05487 > volume #14 level 0.05785 > volume #20 level 0.0593 > select clear > transparency #19.1 70 > select clear > save /Users/maryamfeghhi/Desktop/image15.png supersample 3 > select clear > transparency #19.1 40 > select clear > volume #20 level 0.04553 > volume #20 level 0.04908 > volume #19 level 0.002706 > fitmap #20 inMap #19 Fit map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian in map Heads.mrc copy using 534514 points correlation = 0.8587, correlation about mean = 0.4463, overlap = 5335 steps = 56, shift = 0.161, angle = 0.566 degrees Position of Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#20) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation 0.98459793 -0.17483396 -0.00004597 53.47595127 0.17483396 0.98459793 0.00000961 -77.17719397 0.00004358 -0.00001749 1.00000000 -20.30227263 Axis -0.00007750 -0.00025611 0.99999996 Axis point 464.79856734 264.91145818 0.00000000 Rotation angle (degrees) 10.06899610 Shift along axis -20.28665016 > save /Users/maryamfeghhi/Desktop/image16.png supersample 3 > save /Users/maryamfeghhi/Desktop/image17.png supersample 3 > save /Users/maryamfeghhi/Desktop/image18.png supersample 3 > save /Users/maryamfeghhi/Desktop/image19.png supersample 3 > select clear > transparency sel 0 > select clear > transparency #16.1 50 > select clear > transparency sel 0 > transparency sel 50 > select clear Drag select of 16 Heads-N-Eclosed_122017.mrc gaussian > transparency sel 0 > transparency sel 50 > transparency #16.1 70 > select clear > transparency #16.1 0 > transparency sel 50 > transparency sel 0 > transparency sel 50 > transparency sel 0 > transparency sel 50 > transparency sel 0 > transparency sel 50 > transparency sel 0 > transparency sel 50 > transparency sel 0 > transparency sel 50 > select clear > volume #16 level 0.05356 > select clear > view matrix models #17,1,0,0,514.68,0,1,0,250.05,0,0,1,481.45 > view matrix models #17,1,0,0,510.86,0,1,0,233.72,0,0,1,314.38 > view matrix models #17,1,0,0,512.7,0,1,0,236.76,0,0,1,314.66 > volume erase #16 center 512.7,236.76,314.66 radius 39.69 > view matrix models #17,1,0,0,262.14,0,1,0,193.73,0,0,1,350.12 > volume erase #16 center 262.14,193.73,350.12 radius 39.69 > view matrix models #17,1,0,0,218.97,0,1,0,416.19,0,0,1,431.61 > view matrix models #17,1,0,0,220.72,0,1,0,403.36,0,0,1,422.64 > view matrix models > #16,0.99989,0.014899,-0.00077736,-3.3153,-0.0149,0.99989,-0.00069068,17.181,0.00076698,0.00070219,1,-6.6848 > view matrix models > #16,0.99989,0.014899,-0.00077736,136.68,-0.0149,0.99989,-0.00069068,-105.65,0.00076698,0.00070219,1,-102.8 > view matrix models #17,1,0,0,348.19,0,1,0,285.59,0,0,1,331.05 > view matrix models #17,1,0,0,350.64,0,1,0,354.17,0,0,1,245.52 > volume erase #16 center 350.64,354.17,245.52 radius 39.69 > view matrix models #17,1,0,0,237.02,0,1,0,234.62,0,0,1,275.6 > view matrix models #17,1,0,0,598.58,0,1,0,403.64,0,0,1,283.02 > view matrix models #17,1,0,0,601.45,0,1,0,406.14,0,0,1,269.66 > view matrix models #17,1,0,0,605.36,0,1,0,396.24,0,0,1,267.71 > volume erase #16 center 605.36,396.24,267.71 radius 39.69 > view matrix models > #19,0.99987,0.015976,0.00034653,135.42,-0.015976,0.99987,-0.00064007,-113.37,-0.00035672,0.00063446,1,-39.797 > view matrix models > #19,0.99987,0.015976,0.00034653,144.71,-0.015976,0.99987,-0.00064007,-91.408,-0.00035672,0.00063446,1,-50.561 > view matrix models > #19,0.99987,0.015976,0.00034653,135.94,-0.015976,0.99987,-0.00064007,-105.37,-0.00035672,0.00063446,1,-104.28 > view matrix models > #16,0.99989,0.014899,-0.00077736,137.2,-0.0149,0.99989,-0.00069068,-105.38,0.00076698,0.00070219,1,-101.15 > fitmap #16 inMap #19 Fit map Heads-N-Eclosed_122017.mrc gaussian in map Heads.mrc copy using 915761 points correlation = 0.9716, correlation about mean = 0.9064, overlap = 1.531e+04 steps = 64, shift = 3.56, angle = 0.0199 degrees Position of Heads-N-Eclosed_122017.mrc gaussian (#16) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation 0.99999925 -0.00082208 -0.00090371 0.56205772 0.00082194 0.99999965 -0.00015239 -0.33733550 0.00090384 0.00015165 0.99999958 -0.31008315 Axis 0.12348465 -0.73411749 0.66769982 Axis point 424.62220910 0.00000000 606.56085801 Rotation angle (degrees) 0.07053709 Shift along axis 0.11000693 > select clear > transparency sel 0 > transparency sel 50 > select clear > transparency #16.1 80 > select clear > transparency sel 0 > transparency sel 50 > select clear > transparency sel 0 > transparency sel 50 > select clear > transparency sel 0 > transparency sel 50 > select clear > transparency #16.1 80 > select clear > save /Users/maryamfeghhi/Desktop/image20.png supersample 3 > graphics silhouettes false > graphics silhouettes true > transparency sel 0 > transparency sel 50 > select clear > transparency #16.1 90 > select clear > volume #16 color #8af6fb > select clear > transparency sel 50 > select clear > save /Users/maryamfeghhi/Desktop/image21.png supersample 3 > transparency #16.1 60 > select clear > transparency #16.1 70 > select clear > transparency #16.1 80 > select clear > save /Users/maryamfeghhi/Desktop/image22.png supersample 3 > save /Users/maryamfeghhi/Desktop/image23.png supersample 3 > fitmap #14 inMap #19 Fit map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian in map Heads.mrc copy using 443870 points correlation = 0, correlation about mean = 0, overlap = 0 steps = 24, shift = 0, angle = 0 degrees Position of Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#14) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation 0.98627834 -0.16509101 -0.00003389 -84.38016735 0.16509101 0.98627834 0.00000838 25.24530298 0.00003204 -0.00001386 1.00000000 62.23443017 Axis -0.00006738 -0.00019965 0.99999998 Axis point -194.13107948 -494.95227195 0.00000000 Rotation angle (degrees) 9.50252192 Shift along axis 62.23507411 > fitmap #14 inMap #19 Fit map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian in map Heads.mrc copy using 443870 points correlation = 0, correlation about mean = 0, overlap = 0 steps = 24, shift = 0, angle = 0 degrees Position of Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#14) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation 0.98627834 -0.16509101 -0.00003389 -84.38016735 0.16509101 0.98627834 0.00000838 25.24530298 0.00003204 -0.00001386 1.00000000 62.23443017 Axis -0.00006738 -0.00019965 0.99999998 Axis point -194.13107948 -494.95227195 0.00000000 Rotation angle (degrees) 9.50252192 Shift along axis 62.23507411 > view matrix models > #14,0.98879,-0.14931,0.00031279,179.72,0.14931,0.98879,-0.00063115,-170.43,-0.00021504,0.00067078,1,-24.17 > view matrix models > #14,0.98879,-0.14931,0.00031279,201.51,0.14931,0.98879,-0.00063115,-172.48,-0.00021504,0.00067078,1,-113.44 > view matrix models > #14,0.98879,-0.14931,0.00031279,186.66,0.14931,0.98879,-0.00063115,-179.5,-0.00021504,0.00067078,1,-112 > fitmap #14 inMap #19 Fit map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian in map Heads.mrc copy using 443870 points correlation = 0.8744, correlation about mean = 0.3954, overlap = 5313 steps = 104, shift = 13.1, angle = 0.746 degrees Position of Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#14) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation 0.98404544 -0.17791733 0.00003252 54.80018037 0.17791733 0.98404544 0.00000633 -78.12233697 -0.00003313 -0.00000044 1.00000000 -20.44726238 Axis -0.00001902 0.00018449 0.99999998 Axis point 462.96955140 266.49071228 0.00000000 Rotation angle (degrees) 10.24847351 Shift along axis -20.46271724 > fitmap #14 inMap #19 Fit map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian in map Heads.mrc copy using 443870 points correlation = 0.8745, correlation about mean = 0.3954, overlap = 5312 steps = 44, shift = 0.0136, angle = 0.00359 degrees Position of Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#14) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation 0.98404652 -0.17791137 -0.00002839 54.82282998 0.17791137 0.98404652 -0.00000683 -78.11424430 0.00002915 0.00000167 1.00000000 -20.48462034 Axis 0.00002387 -0.00016172 0.99999999 Axis point 462.99052741 266.63280533 0.00000000 Rotation angle (degrees) 10.24812647 Shift along axis -20.47067877 > select clear > save /Users/maryamfeghhi/Desktop/image24.png supersample 3 > save /Users/maryamfeghhi/Desktop/image25.png supersample 3 > save /Users/maryamfeghhi/Desktop/image26.png supersample 3 > select clear > transparency #16.1 80 > select clear > transparency #16.1 10 > select clear > transparency #16.1 0 > select #16 3 models selected > transparency sel 50 > transparency sel 0 > transparency sel 50 > transparency sel 0 > transparency sel 50 > select clear > volume #14 color #f0f0f0 > volume #14 color #4387a9 > save /Users/maryamfeghhi/Desktop/image27.png supersample 3 > save /Users/maryamfeghhi/Desktop/image28.png supersample 3 > volume #19 level 0.112 > volume #19 level 0.004505 > transparency #19.1 80 > select clear > volume #14 level 0.072 > volume #19 style mesh > fitmap #14 inMap #19 Fit map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian in map Heads.mrc copy using 305744 points correlation = 0.8998, correlation about mean = 0.2894, overlap = 4541 steps = 52, shift = 0.153, angle = 0.447 degrees Position of Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#14) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation 0.98262858 -0.18558306 0.00004144 58.18746411 0.18558306 0.98262858 0.00000959 -80.45915596 -0.00004250 -0.00000173 1.00000000 -20.60993120 Axis -0.00003049 0.00022614 0.99999997 Axis point 458.85077202 270.58474136 0.00000000 Rotation angle (degrees) 10.69512844 Shift along axis -20.62989986 > fitmap #14 inMap #19 Fit map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian in map Heads.mrc copy using 305744 points correlation = 0.8997, correlation about mean = 0.2897, overlap = 4541 steps = 60, shift = 0.0209, angle = 0.0049 degrees Position of Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#14) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation 0.98263647 -0.18554130 -0.00002951 58.20264641 0.18554130 0.98263647 -0.00001244 -80.43408519 0.00003130 0.00000675 1.00000000 -20.62145750 Axis 0.00005173 -0.00016387 0.99999999 Axis point 458.86667076 270.75462609 0.00000000 Rotation angle (degrees) 10.69269318 Shift along axis -20.60526534 > volume #19 style surface > transparency #19.1 80 > select clear > transparency #19.1 0 > select clear > ui tool show ""Color Actions"" > color royal blue > color medium blue > color blue > color cornflower blue > color dodger blue > color deep sky blue > color dodger blue > color royal blue > ui tool show ""Color Actions"" > color sel deep sky blue > select clear > fitmap #16 inMap #19 Fit map Heads-N-Eclosed_122017.mrc gaussian in map Heads.mrc copy using 915761 points correlation = 0.9716, correlation about mean = 0.9064, overlap = 1.531e+04 steps = 40, shift = 0.0176, angle = 0.00527 degrees Position of Heads-N-Eclosed_122017.mrc gaussian (#16) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation 0.99999923 -0.00088456 -0.00087045 0.57342279 0.00088448 0.99999960 -0.00009364 -0.38145536 0.00087053 0.00009287 0.99999962 -0.29489687 Axis 0.07492941 -0.69945923 0.71073368 Axis point 352.33405676 639.46323654 0.00000000 Rotation angle (degrees) 0.07130566 Shift along axis 0.10018557 > fitmap #16 inMap #19 Fit map Heads-N-Eclosed_122017.mrc gaussian in map Heads.mrc copy using 915761 points correlation = 0.9716, correlation about mean = 0.9064, overlap = 1.531e+04 steps = 40, shift = 0.0146, angle = 0.00454 degrees Position of Heads-N-Eclosed_122017.mrc gaussian (#16) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation 0.99999928 -0.00080692 -0.00088537 0.55096498 0.00080684 0.99999967 -0.00009996 -0.35270533 0.00088545 0.00009925 0.99999960 -0.28787649 Axis 0.08286408 -0.73658059 0.67125448 Axis point 410.46259557 0.00000000 611.46717017 Rotation angle (degrees) 0.06887235 Shift along axis 0.11221272 > select clear > volume #16 level 0.05659 > select clear > volume #16 level 0.05772 > select clear > volume #16 level 0.05659 > volume #16 level 0.05545 > select clear > select #16 3 models selected > volume #16 level 0.05015 > select clear > save /Users/maryamfeghhi/Desktop/image29.png supersample 3 > view matrix models > #2,0.99987,0.015896,-0.0023857,12.857,-0.015893,0.99987,0.0011563,-0.028325,0.0024038,-0.0011182,1,23.104 > view matrix models > #2,0.99987,0.015896,-0.0023857,12.762,-0.015893,0.99987,0.0011563,-0.15417,0.0024038,-0.0011182,1,26.309 > volume #3 color #e7feff > volume #3 color #b2d5ff > volume #3 color #a9d9ff > save /Users/maryamfeghhi/Desktop/image30.png supersample 3 > volume #2 color #97cbec > volume #2 color #81aecb > save /Users/maryamfeghhi/Desktop/image31.png supersample 3 > open ""/Users/maryamfeghhi/Desktop/maps/foragers2024/Green protein- > Foragers.mrc"" /Users/maryamfeghhi/Desktop/maps/foragers2024/Flighthin- > Foragers.mrc Opened Green protein-Foragers.mrc as #21.1, grid size 173,173,506, pixel 0.927,0.927,0.927, shown at level 0.000204, step 1, values float32 Opened Flighthin-Foragers.mrc as #21.2, grid size 220,221,556, pixel 0.927,0.927,0.927, shown at level 0.000237, step 2, values float32 > volume #21.1 color #dde78f > volume #21.1 color #d6e786 > volume #21.1 color #ff9300 > volume #21.2 color #ff2600 > open /Users/maryamfeghhi/Desktop/maps/foragers2024/myofilin-foragers.mrc Opened myofilin-foragers.mrc as #22, grid size 171,171,549, pixel 0.927,0.927,0.927, shown at level 0.000237, step 1, values float32 > volume #22 color #fffb00 > open /Users/maryamfeghhi/Desktop/maps/fo-paro-core_48130.mrc Opened fo-paro-core_48130.mrc as #23, grid size 113,122,677, pixel 0.927,0.927,0.927, shown at level 0.39, step 1, values float32 > volume #23 color #ff2f92 > volume #23 color #ff8ad8 > volume #23 level 0.05106 > volume #23 level 0.2579 > volume #23 level 0.3003 > volume #23 level 0.2791 > volume #23 level 0.2685 > open /Users/maryamfeghhi/Desktop/maps/Newly-emerged/fli-newlyemerged.mrc > ""/Users/maryamfeghhi/Desktop/maps/Newly-emerged/Myofilin-Newly emerged.mrc"" > ""/Users/maryamfeghhi/Desktop/maps/Newly-emerged/Blue protein-Newly > emerged.mrc"" Opened fli-newlyemerged.mrc as #24.1, grid size 180,176,539, pixel 0.927,0.927,0.927, shown at level 0.000139, step 2, values float32 Opened Myofilin-Newly emerged.mrc as #24.2, grid size 171,171,526, pixel 0.927,0.927,0.927, shown at level 0.000254, step 1, values float32 Opened Blue protein-Newly emerged.mrc as #24.3, grid size 171,173,512, pixel 0.927,0.927,0.927, shown at level 0.000208, step 1, values float32 > volume #24.2 color #fffb00 > volume #24.3 color #ff9300 > volume #24.1 color #ff2600 > open /Users/maryamfeghhi/Desktop/maps/Newly-emerged/NE-Para-ap18.mrc Opened NE-Para-ap18.mrc as #25, grid size 77,79,445, pixel 1.46,1.46,1.46, shown at level 0.467, step 1, values float32 > volume #25 color #ff8ad8 > volume #25 level 0.309 > open ""/Users/maryamfeghhi/Desktop/maps/segmentation-Eclosed/green > protein.mrc"" /Users/maryamfeghhi/Desktop/maps/segmentation- > Eclosed/myofilin.mrc /Users/maryamfeghhi/Desktop/maps/segmentation- > Eclosed/FLIGHTIN-eclosed.mrc Opened green protein.mrc as #26.1, grid size 169,169,511, pixel 0.927,0.927,0.927, shown at level 7.76e-05, step 1, values float32 Opened myofilin.mrc as #26.2, grid size 163,163,552, pixel 0.927,0.927,0.927, shown at level 9.65e-05, step 1, values float32 Opened FLIGHTIN-eclosed.mrc as #26.3, grid size 197,197,555, pixel 0.927,0.927,0.927, shown at level 6.86e-05, step 2, values float32 > volume #26.3 color #ff2600 > volume #26.3 step 1 > volume #26.2 color #fffb00 > volume #26.1 color #ff9300 > ui tool show ""Side View"" > view orient > save /Users/maryamfeghhi/Desktop/image32.png supersample 3 > volume #26.1 color #fffb00 > save /Users/maryamfeghhi/Desktop/image33.png supersample 3 > volume #25 level 0.305 > surface dust #24.1 size 9.27 > surface dust #24.2 size 9.27 > surface dust #24.3 size 9.27 > surface dust #25 size 14.6 > surface dust #24.1 size 9.27 > surface dust #24.2 size 9.27 > surface dust #24.3 size 9.27 > surface dust #25 size 14.6 > save /Users/maryamfeghhi/Desktop/image34.png supersample 3 > volume #24.3 color #fffb00 > save /Users/maryamfeghhi/Desktop/image35.png supersample 3 > view orient > save /Users/maryamfeghhi/Desktop/image32.png supersample 3 > volume #21.1 color #fffb00 > save /Users/maryamfeghhi/Desktop/image33.png supersample 3 > save /Users/maryamfeghhi/Desktop/image32.png supersample 3 > volume #21.1 color #ff9300 > save /Users/maryamfeghhi/Desktop/image33.png supersample 3 > save /Users/maryamfeghhi/Desktop/image32.png supersample 3 > volume #26.1 color #ff9300 > save /Users/maryamfeghhi/Desktop/image33.png supersample 3 > volume #24.3 color #ff9300 > save /Users/maryamfeghhi/Desktop/image32.png supersample 3 > volume #24.3 color #fffc79 > save /Users/maryamfeghhi/Desktop/image33.png supersample 3 > volume #24.3 color #ff9300 > save /Users/maryamfeghhi/Desktop/image32.png supersample 3 > volume #24.3 color #fffc79 > save /Users/maryamfeghhi/Desktop/image33.png supersample 3 > ui tool show ""Side View"" > view matrix models > #16,0.99988,0.015169,-0.00054031,5.6132,-0.01517,0.99988,-0.00072588,-3.7893,0.00052924,0.00073399,1,-114.66 > view matrix models > #16,0.99988,0.015169,-0.00054031,9.7293,-0.01517,0.99988,-0.00072588,-24.122,0.00052924,0.00073399,1,-31.1 > view matrix models > #16,0.99988,0.015169,-0.00054031,-15.709,-0.01517,0.99988,-0.00072588,-20.156,0.00052924,0.00073399,1,-33.377 > view matrix models > #16,0.99988,0.015169,-0.00054031,-1.4899,-0.01517,0.99988,-0.00072588,-8.2108,0.00052924,0.00073399,1,-32.166 > volume #16 level 0.02919 > surface dust #16 size 9.27 > surface dust #20 size 9.27 > fitmap #16 inMap #20 Fit map Heads-N-Eclosed_122017.mrc gaussian in map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian using 1151436 points correlation = 0.8242, correlation about mean = 0.536, overlap = 6264 steps = 120, shift = 10.9, angle = 3.93 degrees Position of Heads-N-Eclosed_122017.mrc gaussian (#16) relative to Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#20) coordinates: Matrix rotation and translation 0.99430954 0.10639839 -0.00528353 -17.82560249 -0.10637680 0.99431697 0.00421301 56.93578358 0.00570176 -0.00362699 0.99997717 18.36870871 Axis -0.03677250 -0.05152511 -0.99799446 Axis point 514.44388046 202.17321203 0.00000000 Rotation angle (degrees) 6.11943729 Shift along axis -20.61000026 > volume #16 level 0.003239 > ui mousemode right ""map eraser"" > volume erase #16 center 188.72,251.75,229.64 radius 54.946 > transparency #16.1 70 > select clear > volume #16 level 0.02688 > close #16 > volume erase #15 center 418.36,312.24,127.35 radius 215.82 Opened Heads-N-Eclosed_122017.mrc copy as #16, grid size 407,410,669, pixel 0.927,0.927,0.927, shown at step 1, values float32 > volume erase #16 center 221.59,379.31,126.13 radius 215.82 > volume erase #16 center 426.74,378.76,127.3 radius 215.82 > volume erase #16 center 306.3,394.69,114.27 radius 215.82 > volume erase #16 center 393.2,396.29,643.1 radius 215.82 > volume erase #16 center 339.61,320.18,634.49 radius 215.82 > volume erase #16 center 591.74,341.19,610.77 radius 215.82 > surface dust #16 size 9.27 > volume #16 level 0.02883 > volume #16 level 0.008421 > ui mousemode right ""move picked models"" > view matrix models > #20,0.98727,-0.15908,0.00030072,53.104,0.15908,0.98727,-0.00062974,-54.842,-0.00019671,0.00066956,1,2.8478 > view matrix models > #20,0.98727,-0.15908,0.00030072,66.834,0.15908,0.98727,-0.00062974,-59.929,-0.00019671,0.00066956,1,-2.8608 > view matrix models > #20,0.98727,-0.15908,0.00030072,64.322,0.15908,0.98727,-0.00062974,-55.264,-0.00019671,0.00066956,1,3.8421 > fitmap #16 inMap #20 Fit map Heads-N-Eclosed_122017.mrc copy in map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian using 1049597 points correlation = 0.8119, correlation about mean = 0.5015, overlap = 6537 steps = 104, shift = 6.52, angle = 3.6 degrees Position of Heads-N-Eclosed_122017.mrc copy (#16) relative to Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#20) coordinates: Matrix rotation and translation 0.99526387 0.09709811 -0.00466773 -14.96598582 -0.09708029 0.99526889 0.00390586 53.38595797 0.00502489 -0.00343421 0.99998148 18.39958845 Axis -0.03772678 -0.04981849 -0.99804549 Axis point 530.25748040 187.94590011 0.00000000 Rotation angle (degrees) 5.58252378 Shift along axis -20.45861545 > fitmap #16 inMap #20 Fit map Heads-N-Eclosed_122017.mrc copy in map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian using 1049597 points correlation = 0.8118, correlation about mean = 0.5015, overlap = 6537 steps = 48, shift = 0.0197, angle = 0.00528 degrees Position of Heads-N-Eclosed_122017.mrc copy (#16) relative to Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#20) coordinates: Matrix rotation and translation 0.99526395 0.09709634 -0.00468795 -14.95649900 -0.09707799 0.99526876 0.00399576 53.34803889 0.00505374 -0.00352174 0.99998103 18.43964469 Axis -0.03863768 -0.05006936 -0.99799809 Axis point 529.80266203 188.03580495 0.00000000 Rotation angle (degrees) 5.58267236 Shift along axis -20.49594761 > volume #16 level 0.005341 > view matrix models > #19,0.99987,0.015976,0.00034653,56.861,-0.015976,0.99987,-0.00064007,22.104,-0.00035672,0.00063446,1,50.537 > view matrix models > #19,0.99987,0.015976,0.00034653,4.3626,-0.015976,0.99987,-0.00064007,25.644,-0.00035672,0.00063446,1,46.01 > view matrix models > #19,0.99987,0.015976,0.00034653,5.6772,-0.015976,0.99987,-0.00064007,26.862,-0.00035672,0.00063446,1,20.689 > view matrix models > #16,0.99803,-0.06247,-0.0049632,45.003,0.062483,0.99804,0.0025694,-0.49902,0.004793,-0.0028744,0.99998,23.44 > view matrix models > #19,0.99987,0.015976,0.00034653,12.88,-0.015976,0.99987,-0.00064007,23.952,-0.00035672,0.00063446,1,20.77 > fitmap #16 inMap #19 Fit map Heads-N-Eclosed_122017.mrc copy in map Heads.mrc copy using 1049597 points correlation = 0.9368, correlation about mean = 0.896, overlap = 1.635e+04 steps = 112, shift = 5.28, angle = 4.51 degrees Position of Heads-N-Eclosed_122017.mrc copy (#16) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation 0.99999980 0.00003362 -0.00063838 0.19765502 -0.00003367 1.00000000 -0.00007586 -0.01758953 0.00063838 0.00007588 0.99999979 -0.23100167 Axis 0.11785131 -0.99165498 -0.05226343 Axis point 357.63009158 0.00000000 299.75523026 Rotation angle (degrees) 0.03688431 Shift along axis 0.05280959 > volume #16 level 0.0577 > volume #16 level 0.07541 > volume #16 level 0.02459 > volume #16 level 0.006111 > ui tool show ""Map Filter"" > volume gaussian #16 sDev 1.2 Opened Heads-N-Eclosed_122017.mrc copy gaussian as #17, grid size 407,410,669, pixel 0.927,0.927,0.927, shown at step 1, values float32 > surface dust #19 size 9.27 > surface dust #17 size 9.27 > volume gaussian #16 sDev 1.5 modelId #17 Opened Heads-N-Eclosed_122017.mrc copy gaussian as #17, grid size 407,410,669, pixel 0.927,0.927,0.927, shown at step 1, values float32 > volume gaussian #16 sDev 2 modelId #17 Opened Heads-N-Eclosed_122017.mrc copy gaussian as #17, grid size 407,410,669, pixel 0.927,0.927,0.927, shown at step 1, values float32 > volume #17 level 0.07482 > volume #19 level 0.00258 > volume #19 orthoplanes xyz positionPlanes 180,180,330 style image region all > mousemode rightMode ""move planes"" > volume #17 orthoplanes xyz positionPlanes 203,205,334 style image region all > mousemode rightMode ""move planes"" > volume #!17,19 region all imageMode ""full region"" > volume unzone #!17,19 > mousemode rightMode ""crop volume"" > volume #!17,19 planes z style image imageMode ""full region"" > mousemode rightMode ""move planes"" Volume zone shortcut requires 1 displayed atomic model and 1 map, got 0 atomic models, 2 maps. > volume #!17,19 style surface > volume #!17,19 planes z style image imageMode ""full region"" > mousemode rightMode ""move planes"" > volume #19 style image region all imageMode ""tilted slab"" tiltedSlabAxis > 0,0,1 tiltedSlabOffset 359.2 tiltedSlabSpacing 0.927 tiltedSlabPlaneCount 10 > mousemode rightMode ""rotate slab"" > volume #17 style image region all imageMode ""tilted slab"" tiltedSlabAxis > 0,0,1 tiltedSlabOffset 360.1 tiltedSlabSpacing 0.927 tiltedSlabPlaneCount 10 > mousemode rightMode ""rotate slab"" > volume #19 orthoplanes xyz positionPlanes 180,180,330 style image region all > mousemode rightMode ""move planes"" > volume #17 orthoplanes xyz positionPlanes 203,205,334 style image region all > mousemode rightMode ""move planes"" > volume #!17,19 region all imageMode ""full region"" > volume unzone #!17,19 > mousemode rightMode ""crop volume"" Volume zone shortcut requires 1 displayed atomic model and 1 map, got 0 atomic models, 2 maps. > volume #17 style surface > volume #!17,19 showOutlineBox false > volume #19 style surface > volume #17 change image level -9.516e-17,0 level 0.03517,0.8 level 0.3168,1 > select clear > ui tool show ""Color Actions"" > color sel deep sky blue > select clear > transparency sel 50 > select clear > select #19 3 models selected > select clear > lighting shadows true > graphics silhouettes false > graphics silhouettes true > lighting full > lighting soft > lighting simple > view > ui tool show ""Side View"" > save /Users/maryamfeghhi/Desktop/image32.png supersample 3 > select clear > transparency #19.1 70 > select clear > save /Users/maryamfeghhi/Desktop/image33.png supersample 3 > volume #17 color #97f0fa > volume #17 color #96c9f9 > volume #17 color #a9d9ff > graphics silhouettes false > graphics silhouettes true > graphics silhouettes false > graphics silhouettes true > select clear > transparency #17.1 40 > select clear > transparency #19.1 30 > select clear > transparency #19.1 50 > select clear > select #19 3 models selected > transparency #19.1 30 > select clear > save /Users/maryamfeghhi/Desktop/image34.png supersample 3 > transparency #17.1 30 > select clear > lighting shadows true > lighting shadows false > lighting soft > lighting simple > volume sel style mesh > select clear > volume sel style surface > select clear > save /Users/maryamfeghhi/Desktop/image35.png supersample 3 > save /Users/maryamfeghhi/Desktop/image36.png supersample 3 > volume #19 color #78e0deb3 > volume #20 color #aa8de0 > volume #20 color #37a0e0 > volume #20 color #4ad4e0 > volume #20 color #49d5e0 > volume #20 color #81aecb > volume #19 color #2239e3b3 > volume #20 level 0.05715 > fitmap #20 inMap #19 Fit map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian in map Heads.mrc copy using 426820 points correlation = 0.8778, correlation about mean = 0.3807, overlap = 4971 steps = 80, shift = 3.94, angle = 0.495 degrees Position of Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#20) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation 0.98305128 -0.18333079 0.00001985 57.20017727 0.18333079 0.98305128 0.00003201 -79.78230368 -0.00002538 -0.00002783 1.00000000 -20.49440953 Axis -0.00016319 0.00012336 0.99999998 Axis point 460.07907474 269.45325477 0.00000000 Rotation angle (degrees) 10.56382965 Shift along axis -20.51358608 > ui mousemode right ""move picked models"" > view matrix models > #20,0.98585,-0.1676,0.00036689,69.161,0.1676,0.98585,-0.00060839,-49.955,-0.00025974,0.00066127,1,-0.63613 > view matrix models > #20,0.98585,-0.1676,0.00036689,147.99,0.1676,0.98585,-0.00060839,-29.977,-0.00025974,0.00066127,1,-42.197 > ui mousemode right ""rotate selected models"" > view matrix models > #20,0.97635,-0.21613,0.0060509,167.54,0.21621,0.97594,-0.028051,-34.138,0.00015733,0.028696,0.99959,-52.672 > view matrix models > #20,-0.78636,-0.6168,-0.034532,990.96,-0.59757,0.77365,-0.21066,413.97,0.15665,-0.14502,-0.97695,695.4 > view matrix models > #20,-0.77844,-0.60241,-0.17645,1035.9,-0.57797,0.79751,-0.17297,383.59,0.24492,-0.03266,-0.96899,617.46 > view matrix models > #20,-0.80172,-0.59373,-0.068784,1000.9,-0.58063,0.80096,-0.14605,373.19,0.14181,-0.077151,-0.98688,679.32 > ui mousemode right ""move picked models"" > view matrix models > #20,-0.80172,-0.59373,-0.068784,985.86,-0.58063,0.80096,-0.14605,357.39,0.14181,-0.077151,-0.98688,735.97 > view matrix models > #20,-0.80172,-0.59373,-0.068784,928,-0.58063,0.80096,-0.14605,344.52,0.14181,-0.077151,-0.98688,733.3 > view matrix models > #20,-0.80172,-0.59373,-0.068784,921.78,-0.58063,0.80096,-0.14605,346.63,0.14181,-0.077151,-0.98688,723.68 > fitmap #20 inMap #19 Fit map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian in map Heads.mrc copy using 426820 points correlation = 0.7774, correlation about mean = 0.3464, overlap = 3461 steps = 396, shift = 3.52, angle = 21.7 degrees Position of Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#20) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation -0.54778639 -0.83661823 -0.00001576 873.15926290 -0.83661823 0.54778639 0.00002053 463.86375333 -0.00000855 0.00002443 -1.00000000 728.37138540 Axis 0.47543236 -0.87975227 0.00005739 Axis point 561.91852221 0.00000000 364.20183550 Rotation angle (degrees) 179.99976521 Shift along axis 7.08478180 > fitmap #20 inMap #19 Fit map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian in map Heads.mrc copy using 426820 points correlation = 0.7774, correlation about mean = 0.346, overlap = 3461 steps = 40, shift = 0.0154, angle = 0.00382 degrees Position of Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#20) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation -0.54773579 -0.83665136 0.00000461 873.15270462 -0.83665136 0.54773579 0.00000109 463.90218046 -0.00000344 -0.00000326 -1.00000000 728.36642207 Axis -0.47560023 0.87966153 0.00006223 Axis point 561.98461651 0.00000000 364.16567176 Rotation angle (degrees) 179.99973784 Shift along axis -7.14940292 > view matrix models > #20,-0.56103,-0.82779,-0.00034191,924.61,-0.82779,0.56103,0.00064109,482.32,-0.00033887,0.0006427,-1,753.73 > ui mousemode right ""rotate selected models"" > view matrix models > #20,0.05752,-0.98272,0.17594,685.26,0.98363,0.025635,-0.17839,72.804,0.1708,0.18332,0.9681,-116.92 > view matrix models > #20,0.079531,-0.9817,0.17304,677.75,0.98795,0.0545,-0.14488,47.831,0.1328,0.18248,0.9742,-104.7 > ui mousemode right ""move picked models"" > view matrix models > #20,0.079531,-0.9817,0.17304,634.35,0.98795,0.0545,-0.14488,37.382,0.1328,0.18248,0.9742,-110.57 > ui mousemode right ""rotate selected models"" > view matrix models > #20,-0.075186,-0.97511,0.20858,676.36,0.97236,-0.11806,-0.20144,128.9,0.22106,0.18767,0.95703,-139.04 > ui mousemode right ""move picked models"" > view matrix models > #20,-0.075186,-0.97511,0.20858,700.14,0.97236,-0.11806,-0.20144,124.97,0.22106,0.18767,0.95703,-139.77 > view matrix models > #20,-0.075186,-0.97511,0.20858,688.36,0.97236,-0.11806,-0.20144,131.76,0.22106,0.18767,0.95703,-153.91 > ui mousemode right ""rotate selected models"" > view matrix models > #20,-0.11234,-0.93471,0.33718,638.9,0.99326,-0.095881,0.065119,15.643,-0.028539,0.34222,0.93919,-111.71 > view matrix models > #20,0.089467,-0.97835,0.18663,636.3,0.99172,0.10484,0.074174,-62.164,-0.092134,0.17845,0.97963,-41.942 > ui mousemode right ""move picked models"" > view matrix models > #20,0.089467,-0.97835,0.18663,617.09,0.99172,0.10484,0.074174,-57.985,-0.092134,0.17845,0.97963,-16.375 > view matrix models > #20,0.089467,-0.97835,0.18663,642.07,0.99172,0.10484,0.074174,-75.604,-0.092134,0.17845,0.97963,-12.143 > fitmap #20 inMap #19 Fit map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian in map Heads.mrc copy using 426820 points correlation = 0.8778, correlation about mean = 0.3807, overlap = 4971 steps = 292, shift = 18, angle = 19.2 degrees Position of Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#20) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation -0.18334094 -0.98304939 0.00003576 791.69298790 0.98304939 -0.18334094 0.00003318 57.19508418 -0.00002606 0.00004124 1.00000000 -20.53451544 Axis 0.00000410 0.00003145 1.00000000 Axis point 372.08912800 357.44366267 0.00000000 Rotation angle (degrees) 100.56442092 Shift along axis -20.52947002 > fitmap #20 inMap #19 Fit map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian in map Heads.mrc copy using 426820 points correlation = 0.8777, correlation about mean = 0.3807, overlap = 4972 steps = 48, shift = 0.0264, angle = 0.00567 degrees Position of Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#20) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation -0.18330712 -0.98305570 -0.00003682 791.71721181 0.98305570 -0.18330712 -0.00002451 57.21120489 0.00001735 -0.00004069 1.00000000 -20.49660112 Axis -0.00000823 -0.00002755 1.00000000 Axis point 372.09408866 357.47258292 0.00000000 Rotation angle (degrees) 100.56244987 Shift along axis -20.50469168 > volume #20 level 0.08545 > volume #19 level 0.08189 > volume #20 level 0.06231 > select clear > fitmap #20 inMap #19 Fit map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian in map Heads.mrc copy using 370550 points correlation = 0.8884, correlation about mean = 0.3395, overlap = 4702 steps = 48, shift = 0.0659, angle = 0.229 degrees Position of Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#20) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation -0.18723960 -0.98231428 0.00003417 792.87570588 0.98231428 -0.18723960 0.00002424 58.93112635 -0.00001742 0.00003810 1.00000000 -20.57812639 Axis 0.00000705 0.00002626 1.00000000 Axis point 372.05808786 357.47597961 0.00000000 Rotation angle (degrees) 100.79173378 Shift along axis -20.57098557 > fitmap #20 inMap #19 Fit map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian in map Heads.mrc copy using 370550 points correlation = 0.8885, correlation about mean = 0.3395, overlap = 4702 steps = 40, shift = 0.00642, angle = 0.00246 degrees Position of Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#20) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation -0.18728150 -0.98230629 0.00003035 792.89216410 0.98230629 -0.18728150 0.00002117 58.95364690 -0.00001512 0.00003378 1.00000000 -20.58268101 Axis 0.00000642 0.00002314 1.00000000 Axis point 372.05807937 357.47976565 0.00000000 Rotation angle (degrees) 100.79417812 Shift along axis -20.57623007 > fitmap #20 inMap #19 Fit map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian in map Heads.mrc copy using 370550 points correlation = 0.8884, correlation about mean = 0.3395, overlap = 4702 steps = 60, shift = 0.00439, angle = 0.00447 degrees Position of Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#20) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation -0.18724810 -0.98231266 -0.00002749 792.90617031 0.98231266 -0.18724810 -0.00001858 58.95636388 0.00001310 -0.00003048 1.00000000 -20.56672082 Axis -0.00000606 -0.00002066 1.00000000 Axis point 372.06335864 357.49771770 0.00000000 Rotation angle (degrees) 100.79222955 Shift along axis -20.57274326 Correlation = 0.8884, Correlation about mean = 0.3395, Overlap = 4702 > fitmap #20 inMap #19 Fit map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian in map Heads.mrc copy using 370550 points correlation = 0.8884, correlation about mean = 0.3395, overlap = 4702 steps = 60, shift = 0.00661, angle = 0.0038 degrees Position of Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#20) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation -0.18724858 -0.98231256 0.00002735 792.88133182 0.98231256 -0.18724858 0.00001885 58.93763792 -0.00001340 0.00003039 1.00000000 -20.57951334 Axis 0.00000588 0.00002074 1.00000000 Axis point 372.05846877 357.47844288 0.00000000 Rotation angle (degrees) 100.79225765 Shift along axis -20.57363257 > fitmap #20 inMap #19 Fit map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian in map Heads.mrc copy using 370550 points correlation = 0.8884, correlation about mean = 0.3395, overlap = 4702 steps = 60, shift = 0.00663, angle = 0.00381 degrees Position of Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#20) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation -0.18724816 -0.98231264 -0.00002736 792.90613543 0.98231264 -0.18724816 -0.00001903 58.95658845 0.00001357 -0.00003044 1.00000000 -20.56685085 Axis -0.00000581 -0.00002083 1.00000000 Axis point 372.06325381 357.49779576 0.00000000 Rotation angle (degrees) 100.79223301 Shift along axis -20.57268493 > fitmap #20 inMap #19 Fit map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian in map Heads.mrc copy using 370550 points correlation = 0.8884, correlation about mean = 0.3395, overlap = 4702 steps = 60, shift = 0.00666, angle = 0.00385 degrees Position of Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#20) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation -0.18724718 -0.98231283 0.00002752 792.88087025 0.98231283 -0.18724719 0.00001960 58.93667497 -0.00001410 0.00003070 1.00000000 -20.57935427 Axis 0.00000565 0.00002118 1.00000000 Axis point 372.05859506 357.47824674 0.00000000 Rotation angle (degrees) 100.79217639 Shift along axis -20.57362335 > fitmap #20 inMap #19 Fit map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian in map Heads.mrc copy using 370550 points correlation = 0.8884, correlation about mean = 0.3395, overlap = 4702 steps = 60, shift = 0.00673, angle = 0.00387 degrees Position of Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#20) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation -0.18724668 -0.98231293 -0.00002752 792.90575051 0.98231293 -0.18724668 -0.00001951 58.95620695 0.00001401 -0.00003069 1.00000000 -20.56691964 Axis -0.00000569 -0.00002114 1.00000000 Axis point 372.06318571 357.49794521 0.00000000 Rotation angle (degrees) 100.79214695 Shift along axis -20.57267881 > volume #19 level 0 > volume #19 level 0.00231 > view matrix models > #14,0.98548,-0.16982,0.00031683,112.49,0.16982,0.98548,-0.00065204,-99.228,-0.0002015,0.00069638,1,37.445 > view matrix models > #14,0.98548,-0.16982,0.00031683,111.85,0.16982,0.98548,-0.00065204,-97.926,-0.0002015,0.00069638,1,37.33 > view matrix models > #14,0.98548,-0.16982,0.00031683,78.314,0.16982,0.98548,-0.00065204,-45.071,-0.0002015,0.00069638,1,32.018 > view matrix models > #14,0.98548,-0.16982,0.00031683,74.896,0.16982,0.98548,-0.00065204,-41.099,-0.0002015,0.00069638,1,7.2038 > view matrix models > #14,0.98548,-0.16982,0.00031683,69.536,0.16982,0.98548,-0.00065204,-54.457,-0.0002015,0.00069638,1,10.4 > view matrix models > #19,0.99987,0.015976,0.00034653,13.969,-0.015976,0.99987,-0.00064007,27.415,-0.00035672,0.00063446,1,31.325 > fitmap #14 inMap #19 Fit map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian in map Heads.mrc copy using 305744 points correlation = 0.8997, correlation about mean = 0.2897, overlap = 4541 steps = 64, shift = 1.45, angle = 0.00415 degrees Position of Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#14) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation 0.98263104 -0.18557006 0.00003422 58.18589917 0.18557006 0.98263104 0.00000570 -80.45292715 -0.00003468 0.00000075 1.00000000 -20.59750194 Axis -0.00001332 0.00018564 0.99999998 Axis point 458.85202278 270.60313880 0.00000000 Rotation angle (degrees) 10.69437002 Shift along axis -20.61321231 > fitmap #14 inMap #19 Fit map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian in map Heads.mrc copy using 305744 points correlation = 0.8997, correlation about mean = 0.2897, overlap = 4541 steps = 60, shift = 0.00612, angle = 0.00374 degrees Position of Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#14) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation 0.98263414 -0.18555361 -0.00002744 58.20711541 0.18555361 0.98263414 -0.00000728 -80.44052310 0.00002831 0.00000206 1.00000000 -20.62004360 Axis 0.00002517 -0.00015023 0.99999999 Axis point 458.87250001 270.75149724 0.00000000 Rotation angle (degrees) 10.69341117 Shift along axis -20.60649357 > volume #13 level 0.03684 > volume #18 level 0.05294 > volume #14 color #4dafe0 > volume #14 color #99b9f3 > volume #14 color #81aecb > volume #17 level 0.08356 > volume #14 level 0.07493 > volume #14 level 0.07102 > fitmap #14 inMap #19 Fit map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian in map Heads.mrc copy using 313640 points correlation = 0.8984, correlation about mean = 0.2962, overlap = 4600 steps = 60, shift = 0.00721, angle = 0.0123 degrees Position of Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#14) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation 0.98267258 -0.18534996 0.00002818 58.08961452 0.18534996 0.98267258 0.00000823 -80.38742082 -0.00002922 -0.00000286 1.00000000 -20.59427696 Axis -0.00002991 0.00015483 0.99999999 Axis point 458.97608571 270.49438343 0.00000000 Rotation angle (degrees) 10.68153690 Shift along axis -20.60846043 > fitmap #14 inMap #19 Fit map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian in map Heads.mrc copy using 313640 points correlation = 0.8984, correlation about mean = 0.2962, overlap = 4600 steps = 60, shift = 0.00193, angle = 0.00094 degrees Position of Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#14) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation 0.98267516 -0.18533626 0.00003009 58.08285264 0.18533626 0.98267516 0.00001666 -80.38760391 -0.00003265 -0.00001079 1.00000000 -20.58848984 Axis -0.00007406 0.00016926 0.99999998 Axis point 459.00398596 270.47678045 0.00000000 Rotation angle (degrees) 10.68073803 Shift along axis -20.60639777 > fitmap #14 inMap #19 Fit map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian in map Heads.mrc copy using 313640 points correlation = 0.8984, correlation about mean = 0.2963, overlap = 4600 steps = 60, shift = 0.00112, angle = 0.000585 degrees Position of Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#14) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation 0.98267547 -0.18533462 0.00002707 58.08383949 0.18533462 0.98267547 0.00002627 -80.39167112 -0.00003147 -0.00002080 1.00000000 -20.58515142 Axis -0.00012699 0.00015791 0.99999998 Axis point 459.03081327 270.47687275 0.00000000 Rotation angle (degrees) 10.68064245 Shift along axis -20.60522206 > fitmap #14 inMap #19 metric cam Fit map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian in map Heads.mrc copy using 313640 points correlation = 0.8892, correlation about mean = 0.3151, overlap = 4519 steps = 72, shift = 2.01, angle = 0.765 degrees Position of Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#14) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation 0.98506064 -0.17220774 -0.00018454 52.29136732 0.17220779 0.98506061 0.00028493 -76.36435912 0.00013272 -0.00031246 0.99999994 -18.53141721 Axis -0.00173450 -0.00092114 0.99999807 Axis point 466.35890508 263.00841896 0.00000000 Rotation angle (degrees) 9.91622718 Shift along axis -18.55173844 > fitmap #14 inMap #19 Fit map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian in map Heads.mrc copy using 313640 points correlation = 0.8984, correlation about mean = 0.2962, overlap = 4600 steps = 60, shift = 2.01, angle = 0.767 degrees Position of Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#14) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation 0.98266877 -0.18537016 0.00002515 58.09573209 0.18537016 0.98266877 0.00000305 -80.39128051 -0.00002528 0.00000166 1.00000000 -20.59693953 Axis -0.00000376 0.00013601 0.99999999 Axis point 458.95445519 270.49340690 0.00000000 Rotation angle (degrees) 10.68271459 Shift along axis -20.60809170 > fitmap #14 inMap #19 Fit map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian in map Heads.mrc copy using 313640 points correlation = 0.8985, correlation about mean = 0.2959, overlap = 4599 steps = 48, shift = 0.0231, angle = 0.00315 degrees Position of Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#14) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation 0.98265914 -0.18542117 0.00004351 58.10933961 0.18542117 0.98265914 0.00000269 -80.40782067 -0.00004326 0.00000542 1.00000000 -20.61464165 Axis 0.00000737 0.00023397 0.99999997 Axis point 458.91863626 270.47315628 0.00000000 Rotation angle (degrees) 10.68568870 Shift along axis -20.63302585 Correlation = 0.8985, Correlation about mean = 0.2959, Overlap = 4599 > transparency #19.1 80 > transparency #19.1 70 > transparency #19.1 40 > select clear > transparency #19.1 30 > transparency #19.1 60 > select #19 3 models selected > select clear > volume #14 level 0.07883 > volume #19 level 0.00229 > volume #19 level 0.00225 > volume #19 level 0.00223 > volume #19 level 0.00221 > volume #19 level 0.00219 > volume #19 level 0.00215 > volume #19 level 0.00216 > volume #19 level 0.00212 > volume #19 level 0.002 > view matrix models > #19,0.99987,0.015976,0.00034653,11.756,-0.015976,0.99987,-0.00064007,20.312,-0.00035672,0.00063446,1,30.918 > view matrix models > #19,0.99987,0.015976,0.00034653,17.682,-0.015976,0.99987,-0.00064007,17.224,-0.00035672,0.00063446,1,25.722 > view matrix models > #19,0.99987,0.015976,0.00034653,26.458,-0.015976,0.99987,-0.00064007,10.444,-0.00035672,0.00063446,1,23.429 > view matrix models > #14,0.9855,-0.1697,0.00039008,81.688,0.1697,0.9855,-0.00063808,-69.326,-0.00027614,0.00069502,1,10.199 > view matrix models > #19,0.99987,0.015976,0.00034653,25.734,-0.015976,0.99987,-0.00064007,15.354,-0.00035672,0.00063446,1,33.369 > view matrix models > #19,0.99987,0.015976,0.00034653,23.487,-0.015976,0.99987,-0.00064007,15.142,-0.00035672,0.00063446,1,33.387 > view matrix models > #14,0.9855,-0.1697,0.00039008,82.27,0.1697,0.9855,-0.00063808,-42.287,-0.00027614,0.00069502,1,100.99 Drag select of 14 Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian , 19 Heads.mrc copy > view matrix models > #14,0.9855,-0.1697,0.00039008,79.581,0.1697,0.9855,-0.00063808,-76.689,-0.00027614,0.00069502,1,95.621 > view matrix models > #14,0.9855,-0.1697,0.00039008,72.53,0.1697,0.9855,-0.00063808,-78.602,-0.00027614,0.00069502,1,15.509 > view matrix models > #14,0.9855,-0.1697,0.00039008,81.338,0.1697,0.9855,-0.00063808,-71.216,-0.00027614,0.00069502,1,22.809 > fitmap #14 inMap #19 Fit map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian in map Heads.mrc copy using 254582 points correlation = 0.9076, correlation about mean = 0.2482, overlap = 4114 steps = 120, shift = 11.3, angle = 0.0985 degrees Position of Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#14) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation 0.98233904 -0.18710962 0.00001565 58.87870721 0.18710962 0.98233904 0.00002967 -80.93007112 -0.00002093 -0.00002622 1.00000000 -20.59462567 Axis -0.00014934 0.00009776 0.99999998 Axis point 458.13528698 271.41586256 0.00000000 Rotation angle (degrees) 10.78415315 Shift along axis -20.61133000 > volume #19 level 0.0019 > volume #19 level 0.0017 > volume #19 level 0.0015 > volume #19 level 0.001 > volume #19 level 0.0009 > volume #19 level 0.0008 > volume #19 level 0.000415 > transparency #19.1 40 > select clear > transparency #19.1 60 > select clear > transparency #14.1 50 > select clear > select #14 2 models selected > transparency #14.1 30 > select clear > transparency #19.1 70 > select clear > volume #14 level 0.09 > select #19 3 models selected > select clear > transparency sel 0 > transparency sel 50 > select clear > transparency #14.1 60 > select clear > surface style #14 dot > select clear > select #14 2 models selected > select clear > volume sel style mesh > select clear > select #14 2 models selected > surface style #14 solid > select clear > volume #19 level 3.001e-05 > volume #20 level 0.06391 > volume #14 level 0.09527 > volume #14 level 0.09625 > surface dust #14 size 9.27 > surface dust #19 size 9.27 > volume #14 level 0.1011 > volume #16 level 0.07375 > volume #16 level 0.08006 > fitmap #16 inMap #19 Fit map Heads-N-Eclosed_122017.mrc copy in map Heads.mrc copy using 939468 points correlation = 0.9515, correlation about mean = 0.8836, overlap = 1.629e+04 steps = 132, shift = 18.7, angle = 0.00577 degrees Position of Heads-N-Eclosed_122017.mrc copy (#16) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation 0.99999985 0.00001687 -0.00053948 0.17146965 -0.00001691 1.00000000 -0.00006613 -0.01847170 0.00053948 0.00006614 0.99999985 -0.20717714 Axis 0.12161938 -0.99209086 -0.03105554 Axis point 381.48710106 0.00000000 307.45377656 Rotation angle (degrees) 0.03115658 Shift along axis 0.04561364 > select #16 2 models selected > transparency sel 0 > select clear > transparency sel 50 > select clear > fitmap #17 inMap #19 Fit map Heads-N-Eclosed_122017.mrc copy gaussian in map Heads.mrc copy using 688329 points correlation = 0.9934, correlation about mean = 0.9213, overlap = 1.481e+04 steps = 136, shift = 18.7, angle = 0.0428 degrees Position of Heads-N-Eclosed_122017.mrc copy gaussian (#17) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation 0.99999972 -0.00065629 -0.00036692 0.35336057 0.00065629 0.99999978 0.00001616 -0.26907609 0.00036691 -0.00001640 0.99999993 -0.10739553 Axis -0.02164276 -0.48787539 0.87264494 Axis point 387.93604954 539.24233252 0.00000000 Rotation angle (degrees) 0.04309050 Shift along axis 0.02990974 > select clear > volume #17 level 0.09988 > volume #17 level 0.1029 > save /Users/maryamfeghhi/Desktop/image37.png supersample 3 > save /Users/maryamfeghhi/Desktop/image38.png supersample 3 > volume #17 level 0.09039 > volume #17 level 0.09077 > save /Users/maryamfeghhi/Desktop/image39.png supersample 3 > surface style #19 solid > select #19 3 models selected > save /Users/maryamfeghhi/Desktop/image40.png supersample 3 No visible atoms, bonds, or surfaces selected > select #19 3 models selected > graphics silhouettes false > graphics silhouettes true > select clear > transparency #19.1 70 > select clear > save /Users/maryamfeghhi/Desktop/image41.png supersample 3 > volume #14 level 0.09648 > fitmap #17 inMap #14 Fit map Heads-N-Eclosed_122017.mrc copy gaussian in map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian using 632541 points correlation = 0.8533, correlation about mean = 0.4901, overlap = 5686 steps = 108, shift = 2.21, angle = 4.55 degrees Position of Heads-N-Eclosed_122017.mrc copy gaussian (#17) relative to Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#14) coordinates: Matrix rotation and translation 0.99410972 0.10821322 -0.00598013 -18.25911079 -0.10818715 0.99412025 0.00452436 57.54491146 0.00643456 -0.00385074 0.99997188 18.44778601 Axis -0.03860952 -0.05723220 -0.99761404 Axis point 509.71120126 203.96723191 0.00000000 Rotation angle (degrees) 6.22648941 Shift along axis -20.99221696 > fitmap #17 inMap #14 Fit map Heads-N-Eclosed_122017.mrc copy gaussian in map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian using 632541 points correlation = 0.8533, correlation about mean = 0.49, overlap = 5686 steps = 48, shift = 0.0239, angle = 0.0052 degrees Position of Heads-N-Eclosed_122017.mrc copy gaussian (#17) relative to Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#14) coordinates: Matrix rotation and translation 0.99410729 0.10823301 -0.00602658 -18.24272483 -0.10820627 0.99411782 0.00459991 57.52010362 0.00648899 -0.00392069 0.99997126 18.47627315 Axis -0.03927121 -0.05768391 -0.99756220 Axis point 509.28119412 203.90967151 0.00000000 Rotation angle (degrees) 6.22793787 Shift along axis -21.03280207 > fitmap #17 inMap #14 Fit map Heads-N-Eclosed_122017.mrc copy gaussian in map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian using 632541 points correlation = 0.8533, correlation about mean = 0.4901, overlap = 5686 steps = 48, shift = 0.0223, angle = 0.00573 degrees Position of Heads-N-Eclosed_122017.mrc copy gaussian (#17) relative to Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#14) coordinates: Matrix rotation and translation 0.99411048 0.10820592 -0.00598589 -18.25307203 -0.10817990 0.99412109 0.00451255 57.54606088 0.00643898 -0.00383842 0.99997190 18.44310413 Axis -0.03850092 -0.05728307 -0.99761532 Axis point 509.75090004 203.90290066 0.00000000 Rotation angle (degrees) 6.22606102 Shift along axis -20.99277845 > save /Users/maryamfeghhi/Desktop/image42.png supersample 3 > save /Users/maryamfeghhi/Desktop/image43.png supersample 3 > fitmap #17 inMap #19 Fit map Heads-N-Eclosed_122017.mrc copy gaussian in map Heads.mrc copy using 632541 points correlation = 0.994, correlation about mean = 0.922, overlap = 1.433e+04 steps = 100, shift = 2.2, angle = 4.53 degrees Position of Heads-N-Eclosed_122017.mrc copy gaussian (#17) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation 0.99999932 -0.00107239 -0.00046653 0.53478415 0.00107243 0.99999942 0.00010178 -0.44573181 0.00046642 -0.00010228 0.99999989 -0.12890228 Axis -0.08691605 -0.39736393 0.91353572 Axis point 411.12417677 499.46755859 0.00000000 Rotation angle (degrees) 0.06726023 Shift along axis 0.01287959 > save /Users/maryamfeghhi/Desktop/image44.png supersample 3 > volume #17 level 0.08229 > volume #17 level 0.07851 > volume #17 level 0.07726 > volume #16 color #a9d9ff > volume #16 level 0.07633 > ui tool show ""Map Filter"" > volume gaussian #16 sDev 0.46 Opened Heads-N-Eclosed_122017.mrc copy gaussian as #27, grid size 407,410,669, pixel 0.927,0.927,0.927, shown at step 1, values float32 > volume gaussian #16 sDev 1.2 modelId #27 Opened Heads-N-Eclosed_122017.mrc copy gaussian as #27, grid size 407,410,669, pixel 0.927,0.927,0.927, shown at step 1, values float32 > surface dust #27 size 9.27 > volume #27 level 0.04875 > volume gaussian #16 sDev 0.8 modelId #27 Opened Heads-N-Eclosed_122017.mrc copy gaussian as #27, grid size 407,410,669, pixel 0.927,0.927,0.927, shown at step 1, values float32 > volume #27 level 0.04005 > volume #27 level 0.01136 > view matrix models > #27,0.99987,0.015993,-0.00019394,26.924,-0.015993,0.99987,-0.00069758,16.243,0.00018276,0.00070059,1,33.573 > transparency #17.1 50 > volume #17 level 0.07474 > select #17 3 models selected > select clear > save /Users/maryamfeghhi/Desktop/image45.png supersample 3 > volume #20 level 0.05527 > transparency #20.1 40 > select clear > select #20 2 models selected > graphics silhouettes false > graphics silhouettes true > graphics silhouettes false > graphics silhouettes true > lighting full > lighting soft > lighting simple > volume #20 color #7f94d299 > lighting shadows true > lighting shadows false > graphics silhouettes false > volume #20 level 0.03558 > select clear > transparency sel 0 > transparency sel 50 > transparency sel 0 > transparency sel 50 > transparency sel 0 > volume sel style mesh > select clear > volume #!20 style surface > volume #!20 style mesh > graphics silhouettes true > save /Users/maryamfeghhi/Desktop/image46.png supersample 3 > volume #20 color #9fb0d6 > save /Users/maryamfeghhi/Desktop/image47.png supersample 3 > volume #20 level 0.04199 > save /Users/maryamfeghhi/Desktop/image48.png supersample 3 > ui tool show ""Fit in Map"" > fitmap #19 inMap #20 Fit map Heads.mrc copy in map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian using 784926 points correlation = 0.8257, correlation about mean = 0.4203, overlap = 6194 steps = 164, shift = 19.7, angle = 3.85 degrees Position of Heads.mrc copy (#19) relative to Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#20) coordinates: Matrix rotation and translation -0.12085871 0.99266972 0.00003721 63.22790230 -0.99266972 -0.12085871 0.00000947 769.95656726 0.00001390 -0.00003580 1.00000000 19.12960557 Axis -0.00002280 0.00001174 -1.00000000 Axis point 372.56339369 356.98022331 0.00000000 Rotation angle (degrees) 96.94166370 Shift along axis -19.12200571 > volume #20 level 0.04609 > save /Users/maryamfeghhi/Desktop/image49.png supersample 3 > select clear > transparency #19.1 70 > select clear > transparency #19.1 90 > select clear > save /Users/maryamfeghhi/Desktop/image50.png supersample 3 > surface style #19 solid > select clear > transparency #19.1 20 > select #19 3 models selected > transparency #19.1 50 > select clear > save /Users/maryamfeghhi/Desktop/image51.png supersample 3 > save /Users/maryamfeghhi/Desktop/image52.png supersample 3 > surface style #20 solid > select clear > lighting full > lighting soft > select clear > save /Users/maryamfeghhi/Desktop/image53.png supersample 3 > fitmap #19 inMap #20 Fit map Heads.mrc copy in map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian using 784926 points correlation = 0.8257, correlation about mean = 0.4203, overlap = 6194 steps = 48, shift = 0.00732, angle = 0.00234 degrees Position of Heads.mrc copy (#19) relative to Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#20) coordinates: Matrix rotation and translation -0.12082801 0.99267345 0.00006123 63.20772065 -0.99267345 -0.12082801 0.00002132 769.94271320 0.00002857 -0.00005821 1.00000000 19.12507033 Axis -0.00004006 0.00001645 -1.00000000 Axis point 372.55766468 356.98155211 0.00000000 Rotation angle (degrees) 96.93989185 Shift along axis -19.11493378 > fitmap #19 inMap #20 Fit map Heads.mrc copy in map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian using 784926 points correlation = 0.8257, correlation about mean = 0.4203, overlap = 6194 steps = 48, shift = 0.023, angle = 0.00161 degrees Position of Heads.mrc copy (#19) relative to Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#20) coordinates: Matrix rotation and translation -0.12085258 0.99267046 0.00004897 63.22203361 -0.99267046 -0.12085258 0.00001645 769.95228870 0.00002225 -0.00004662 1.00000000 19.14620836 Axis -0.00003177 0.00001346 -1.00000000 Axis point 372.56061429 356.98060129 0.00000000 Rotation angle (degrees) 96.94130990 Shift along axis -19.13785434 > fitmap #19 inMap #20 Fit map Heads.mrc copy in map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian using 784926 points correlation = 0.8257, correlation about mean = 0.4203, overlap = 6194 steps = 48, shift = 0.0198, angle = 0.00158 degrees Position of Heads.mrc copy (#19) relative to Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#20) coordinates: Matrix rotation and translation -0.12087989 0.99266714 0.00005031 63.23113011 -0.99266714 -0.12087989 0.00001568 769.96045569 0.00002164 -0.00004804 1.00000000 19.12717224 Axis -0.00003210 0.00001444 -1.00000000 Axis point 372.55933368 356.98144453 0.00000000 Rotation angle (degrees) 96.94288643 Shift along axis -19.11808585 > volume #19 level 0.001155 > volume #20 level 0.04644 > surface style #19 solid > select clear > surface style #19 solid > select clear > select #20 2 models selected > surface style #20 solid > select clear > volume #20 level 0.04769 > surface style #19 solid > select clear > surface style #19 solid > select clear > surface style #20 solid > select clear > select #19 3 models selected > volume #20 level 0.05214 > surface style #20 solid > select clear > save /Users/maryamfeghhi/Desktop/image54.png supersample 3 > fitmap #19 inMap #20 Fit map Heads.mrc copy in map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian using 784926 points correlation = 0.8257, correlation about mean = 0.4202, overlap = 6194 steps = 48, shift = 0.0287, angle = 0.00184 degrees Position of Heads.mrc copy (#19) relative to Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#20) coordinates: Matrix rotation and translation -0.12091022 0.99266344 0.00004048 63.24264226 -0.99266344 -0.12091022 0.00001318 769.96845308 0.00001798 -0.00003859 1.00000000 19.15338977 Axis -0.00002608 0.00001134 -1.00000000 Axis point 372.55816731 356.98112744 0.00000000 Rotation angle (degrees) 96.94463716 Shift along axis -19.14631033 > fitmap #19 inMap #20 Fit map Heads.mrc copy in map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian using 784926 points correlation = 0.8257, correlation about mean = 0.4203, overlap = 6194 steps = 48, shift = 0.0342, angle = 0.00629 degrees Position of Heads.mrc copy (#19) relative to Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#20) coordinates: Matrix rotation and translation -0.12084586 0.99267128 -0.00004238 63.26670204 -0.99267128 -0.12084586 -0.00001825 769.97406729 -0.00002324 0.00003986 1.00000000 19.11665629 Axis 0.00002927 -0.00000964 -1.00000000 Axis point 372.59530540 356.97078146 0.00000000 Rotation angle (degrees) 96.94092211 Shift along axis -19.12222713 > fitmap #19 inMap #20 Fit map Heads.mrc copy in map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian using 784926 points correlation = 0.8257, correlation about mean = 0.4202, overlap = 6194 steps = 52, shift = 0.0221, angle = 0.00232 degrees Position of Heads.mrc copy (#19) relative to Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#20) coordinates: Matrix rotation and translation -0.12088547 0.99266646 -0.00003532 63.27023423 -0.99266646 -0.12088547 -0.00001724 769.97813273 -0.00002138 0.00003297 1.00000000 19.13660594 Axis 0.00002529 -0.00000702 -1.00000000 Axis point 372.58515134 356.97243468 0.00000000 Rotation angle (degrees) 96.94320823 Shift along axis -19.14040956 > fitmap #19 inMap #20 Fit map Heads.mrc copy in map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian using 784926 points correlation = 0.8257, correlation about mean = 0.4203, overlap = 6194 steps = 64, shift = 0.0177, angle = 0.000357 degrees Position of Heads.mrc copy (#19) relative to Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#20) coordinates: Matrix rotation and translation -0.12088003 0.99266712 -0.00003234 63.26638038 -0.99266712 -0.12088003 -0.00001698 769.97596996 -0.00002076 0.00003005 1.00000000 19.11972866 Axis 0.00002369 -0.00000583 -1.00000000 Axis point 372.58414159 356.97293052 0.00000000 Rotation angle (degrees) 96.94289456 Shift along axis -19.12271988 > fitmap #19 inMap #20 metric correlation Fit map Heads.mrc copy in map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian using 784926 points correlation = 0.8294, correlation about mean = 0.4199, overlap = 6153 steps = 68, shift = 0.743, angle = 2.14 degrees Position of Heads.mrc copy (#19) relative to Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#20) coordinates: Matrix rotation and translation -0.08365599 0.99649469 0.00000219 48.63875612 -0.99649469 -0.08365599 0.00001205 758.07449621 0.00001219 -0.00000117 1.00000000 18.37628523 Axis -0.00000664 -0.00000502 -1.00000000 Axis point 372.86956171 356.67395145 0.00000000 Rotation angle (degrees) 94.79874353 Shift along axis -18.38041156 > fitmap #19 inMap #20 Fit map Heads.mrc copy in map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian using 784926 points correlation = 0.8257, correlation about mean = 0.4202, overlap = 6194 steps = 68, shift = 0.761, angle = 2.15 degrees Position of Heads.mrc copy (#19) relative to Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#20) coordinates: Matrix rotation and translation -0.12090858 0.99266364 -0.00002875 63.27816541 -0.99266364 -0.12090858 -0.00001716 769.98642803 -0.00002051 0.00002646 1.00000000 19.13947456 Axis 0.00002197 -0.00000415 -1.00000000 Axis point 372.58478376 356.97378331 0.00000000 Rotation angle (degrees) 96.94454256 Shift along axis -19.14128063 > fitmap #19 inMap #20 metric correlation Fit map Heads.mrc copy in map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian using 784926 points correlation = 0.8294, correlation about mean = 0.4199, overlap = 6152 steps = 76, shift = 0.778, angle = 2.15 degrees Position of Heads.mrc copy (#19) relative to Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#20) coordinates: Matrix rotation and translation -0.08365076 0.99649513 -0.00000422 48.63906419 -0.99649513 -0.08365076 -0.00004499 758.09821129 -0.00004519 0.00000044 1.00000000 18.37995374 Axis 0.00002280 0.00002056 -1.00000000 Axis point 372.88294234 356.68553600 0.00000000 Rotation angle (degrees) 94.79844276 Shift along axis -18.36326032 Correlation = 0.8294, Correlation about mean = 0.4199, Overlap = 6152 > fitmap #19 inMap #20 metric cam Fit map Heads.mrc copy in map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian using 784926 points correlation = 0.8281, correlation about mean = 0.4231, overlap = 6182 steps = 64, shift = 0.0143, angle = 1.31 degrees Position of Heads.mrc copy (#19) relative to Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#20) coordinates: Matrix rotation and translation -0.10635482 0.99432824 0.00000190 57.48997417 -0.99432824 -0.10635482 0.00004325 765.37234599 0.00004321 0.00000272 1.00000000 18.36110045 Axis -0.00002038 -0.00002077 -1.00000000 Axis point 372.68100655 356.85180528 0.00000000 Rotation angle (degrees) 96.10522914 Shift along axis -18.37817262 > fitmap #19 inMap #20 metric correlation Fit map Heads.mrc copy in map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian using 784926 points correlation = 0.8294, correlation about mean = 0.4199, overlap = 6153 steps = 76, shift = 0.00714, angle = 1.31 degrees Position of Heads.mrc copy (#19) relative to Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#20) coordinates: Matrix rotation and translation -0.08365916 0.99649443 -0.00000237 48.64168238 -0.99649442 -0.08365916 -0.00003825 758.09571834 -0.00003832 -0.00000084 1.00000000 18.38455874 Axis 0.00001877 0.00001804 -1.00000000 Axis point 372.88009742 356.68328578 0.00000000 Rotation angle (degrees) 94.79892591 Shift along axis -18.36997114 > fitmap #19 inMap #20 metric correlation Fit map Heads.mrc copy in map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian using 784926 points correlation = 0.8294, correlation about mean = 0.4199, overlap = 6153 steps = 60, shift = 0.0126, angle = 0.00445 degrees Position of Heads.mrc copy (#19) relative to Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#20) coordinates: Matrix rotation and translation -0.08367200 0.99649335 0.00000469 48.64412199 -0.99649335 -0.08367200 0.00003801 758.07048902 0.00003827 -0.00000150 1.00000000 18.36997538 Axis -0.00001982 -0.00001685 -1.00000000 Axis point 372.86455978 356.66984428 0.00000000 Rotation angle (degrees) 94.79966438 Shift along axis -18.38370955 Correlation = 0.8294, Correlation about mean = 0.4199, Overlap = 6153 > fitmap #19 inMap #20 metric correlation Fit map Heads.mrc copy in map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian using 784926 points correlation = 0.8294, correlation about mean = 0.4199, overlap = 6153 steps = 60, shift = 0.0159, angle = 0.00453 degrees Position of Heads.mrc copy (#19) relative to Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#20) coordinates: Matrix rotation and translation -0.08365602 0.99649469 -0.00000385 48.64106748 -0.99649469 -0.08365602 -0.00003888 758.09604055 -0.00003906 0.00000058 1.00000000 18.38124056 Axis 0.00001980 0.00001767 -1.00000000 Axis point 372.88104799 356.68364672 0.00000000 Rotation angle (degrees) 94.79874513 Shift along axis -18.36688366 > lighting soft > select clear > volume #19 level 0.00616 > select clear > select #19 3 models selected > surface style #19 solid > select clear > ui mousemode right ""move picked models"" > view matrix models > #19,0.99608,-0.088512,0.00035766,48.247,0.088512,0.99607,-0.00065626,-16.265,-0.00029817,0.00068535,1,18.041 > view matrix models > #20,-0.17153,-0.98518,0.0003187,804.15,0.98518,-0.17153,-0.00065914,70.63,0.00070404,0.00020092,1,0.081205 > fitmap #19 inMap #20 metric correlation Fit map Heads.mrc copy in map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian using 784926 points correlation = 0.8294, correlation about mean = 0.42, overlap = 6153 steps = 68, shift = 4.86, angle = 0.00539 degrees Position of Heads.mrc copy (#19) relative to Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#20) coordinates: Matrix rotation and translation -0.08370741 0.99649037 -0.00007465 48.68882393 -0.99649037 -0.08370741 -0.00000432 758.09875726 -0.00001055 0.00007403 0.99999999 18.36789154 Axis 0.00003931 -0.00003216 -1.00000000 Axis point 372.88789449 356.66358306 0.00000000 Rotation angle (degrees) 94.80170003 Shift along axis -18.39035894 > volume #27 level 0.04806 > volume #27 level 0.08725 > surface dust #19 size 9.27 > surface dust #20 size 9.27 > surface dust #27 size 9.27 > volume #27 level 0.07407 > view matrix models > #27,0.99987,0.015993,-0.00019394,8.5798,-0.015993,0.99987,-0.00069758,26.524,0.00018276,0.00070059,1,29.786 > view matrix models > #27,0.99987,0.015993,-0.00019394,10.828,-0.015993,0.99987,-0.00069758,31.144,0.00018276,0.00070059,1,18.055 > view matrix models > #27,0.99987,0.015993,-0.00019394,9.5226,-0.015993,0.99987,-0.00069758,25.844,0.00018276,0.00070059,1,17.08 > volume #17 level 0.01871 > view matrix models > #19,0.99608,-0.08846,0.00033576,289.44,0.088461,0.99608,-0.00073194,-192.11,-0.0002697,0.00075877,1,-0.38886 > view matrix models > #17,0.99989,0.014904,-0.0001183,23.681,-0.014904,0.99989,-0.00053085,14.336,0.00011038,0.00053256,1,33.296 > view matrix models > #17,0.99989,0.014904,-0.0001183,348.96,-0.014904,0.99989,-0.00053085,193.7,0.00011038,0.00053256,1,9.3931 > view matrix models > #20,-0.17153,-0.98518,0.0003187,811.72,0.98518,-0.17153,-0.00065914,129.68,0.00070404,0.00020092,1,-4.8347 > view matrix models > #17,0.99989,0.014904,-0.0001183,353.37,-0.014904,0.99989,-0.00053085,204.7,0.00011038,0.00053256,1,9.0178 > select #19 3 models selected > volume #19 level 0.00154 > select clear > volume #20 level 0.03238 > select clear > surface style #20 solid > select clear > select #20 2 models selected > select clear > select #17 3 models selected > volume sel style surface > graphics silhouettes false > lighting simple > lighting soft > select clear > volume #17 color #54cbfc80 > select clear > view matrix models > #19,0.99608,-0.08846,0.00033576,685.36,0.088461,0.99608,-0.00073194,-58.372,-0.0002697,0.00075877,1,-78.591 > view matrix models > #17,0.99989,0.014904,-0.0001183,354.02,-0.014904,0.99989,-0.00053085,-346.48,0.00011038,0.00053256,1,-20.608 > view matrix models > #20,-0.17153,-0.98518,0.0003187,877.14,0.98518,-0.17153,-0.00065914,7.393,0.00070404,0.00020092,1,-25.481 > view matrix models > #19,0.99608,-0.08846,0.00033576,-85.58,0.088461,0.99608,-0.00073194,215.69,-0.0002697,0.00075877,1,102.28 > select #20 2 models selected > transparency #20.1 10 > transparency #20.1 0 > select clear Drag select of 20 Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian > view matrix models > #20,-0.17153,-0.98518,0.0003187,903.23,0.98518,-0.17153,-0.00065914,10.6,0.00070404,0.00020092,1,81.444 > view matrix models > #17,0.99989,0.014904,-0.0001183,321.86,-0.014904,0.99989,-0.00053085,-304.98,0.00011038,0.00053256,1,-13.581 > view matrix models > #19,0.99608,-0.08846,0.00033576,-55.72,0.088461,0.99608,-0.00073194,210.34,-0.0002697,0.00075877,1,99.445 > view matrix models > #17,0.99989,0.014904,-0.0001183,329.45,-0.014904,0.99989,-0.00053085,-312.72,0.00011038,0.00053256,1,57.875 > view matrix models > #17,0.99989,0.014904,-0.0001183,331.02,-0.014904,0.99989,-0.00053085,-313.89,0.00011038,0.00053256,1,83.594 > view matrix models > #17,0.99989,0.014904,-0.0001183,322.24,-0.014904,0.99989,-0.00053085,-311.1,0.00011038,0.00053256,1,75.768 > fitmap #19 inMap #20 metric correlation Fit map Heads.mrc copy in map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian using 784926 points correlation = 0.01223, correlation about mean = -0.01664, overlap = 1.26e-16 steps = 1128, shift = 57.2, angle = 11 degrees Position of Heads.mrc copy (#19) relative to Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#20) coordinates: Matrix rotation and translation 0.10820906 0.99403694 -0.01346715 345.32864554 -0.99412815 0.10819796 -0.00155233 809.05185559 -0.00008596 0.01355605 0.99990811 10.04381911 Axis 0.00759877 -0.00673008 -0.99994848 Axis point 623.60115098 211.95938786 0.00000000 Rotation angle (degrees) 83.79088213 Shift along axis -12.86421148 > view matrix models > #17,0.99989,0.014904,-0.0001183,321.68,-0.014904,0.99989,-0.00053085,-312.65,0.00011038,0.00053256,1,92.943 > view matrix models > #20,-0.17153,-0.98518,0.0003187,952.52,0.98518,-0.17153,-0.00065914,51.542,0.00070404,0.00020092,1,86.408 > view matrix models > #19,0.96083,-0.2771,0.004158,92.698,0.27713,0.96074,-0.01366,199.97,-0.00020951,0.014278,0.9999,96.986 > view matrix models > #17,0.99989,0.014904,-0.0001183,316.93,-0.014904,0.99989,-0.00053085,-294.13,0.00011038,0.00053256,1,91.528 > view matrix models > #17,0.99989,0.014904,-0.0001183,330.47,-0.014904,0.99989,-0.00053085,-291.07,0.00011038,0.00053256,1,91.754 > view matrix models > #20,-0.17153,-0.98518,0.0003187,1134.1,0.98518,-0.17153,-0.00065914,-230.86,0.00070404,0.00020092,1,111.5 > view matrix models > #20,-0.17153,-0.98518,0.0003187,1123.5,0.98518,-0.17153,-0.00065914,-228.36,0.00070404,0.00020092,1,73.141 > view matrix models > #20,-0.17153,-0.98518,0.0003187,1125.1,0.98518,-0.17153,-0.00065914,-247.18,0.00070404,0.00020092,1,76.777 > view matrix models > #20,-0.17153,-0.98518,0.0003187,1122.1,0.98518,-0.17153,-0.00065914,-237.89,0.00070404,0.00020092,1,77.484 > fitmap #17 inMap #20 metric correlation Fit map Heads-N-Eclosed_122017.mrc copy gaussian in map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian using 1376607 points correlation = 0.8141, correlation about mean = 0.5642, overlap = 6344 steps = 136, shift = 8.88, angle = 5.24 degrees Position of Heads-N-Eclosed_122017.mrc copy gaussian (#17) relative to Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#20) coordinates: Matrix rotation and translation -0.09586854 0.99538712 0.00370149 52.73856430 -0.99537543 -0.09588880 0.00575165 761.37838371 0.00608005 -0.00313297 0.99997661 18.07356280 Axis -0.00446288 -0.00119478 -0.99998933 Axis point 372.10035845 356.76600055 0.00000000 Rotation angle (degrees) 95.50256816 Shift along axis -19.21841871 > view matrix models > #19,0.96083,-0.2771,0.004158,235.78,0.27713,0.96074,-0.01366,-105.9,-0.00020951,0.014278,0.9999,162.69 > volume #17 level 0.002509 > view matrix models > #19,0.96083,-0.2771,0.004158,448.71,0.27713,0.96074,-0.01366,-370.16,-0.00020951,0.014278,0.9999,144.53 > view matrix models > #19,0.96083,-0.2771,0.004158,456.39,0.27713,0.96074,-0.01366,-367,-0.00020951,0.014278,0.9999,93.804 > view matrix models > #17,0.99707,-0.076271,-0.0059826,367.75,0.076285,0.99708,0.0020009,-324.74,0.0058126,-0.0024514,0.99998,96.419 > view matrix models > #19,0.96083,-0.2771,0.004158,437.34,0.27713,0.96074,-0.01366,-383.31,-0.00020951,0.014278,0.9999,99.637 > fitmap #17 inMap #19 metric correlation Fit map Heads-N-Eclosed_122017.mrc copy gaussian in map Heads.mrc copy using 2023118 points correlation = 0.943, correlation about mean = 0.9296, overlap = 1.537e+04 steps = 196, shift = 14.4, angle = 11.8 degrees Position of Heads-N-Eclosed_122017.mrc copy gaussian (#17) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation 0.99999977 -0.00063134 -0.00025683 0.29475716 0.00063130 0.99999979 -0.00013110 -0.26393067 0.00025691 0.00013094 0.99999996 -0.11919845 Axis 0.18876994 -0.37010347 0.90960944 Axis point 391.89999393 453.30894778 0.00000000 Rotation angle (degrees) 0.03976648 Shift along axis 0.04489891 > fitmap #17 inMap #19 metric correlation Fit map Heads-N-Eclosed_122017.mrc copy gaussian in map Heads.mrc copy using 2023118 points correlation = 0.943, correlation about mean = 0.9296, overlap = 1.537e+04 steps = 40, shift = 0.0158, angle = 0.00585 degrees Position of Heads-N-Eclosed_122017.mrc copy gaussian (#17) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation 0.99999982 -0.00053341 -0.00028263 0.26940306 0.00053337 0.99999985 -0.00014461 -0.22322003 0.00028271 0.00014446 0.99999995 -0.11736040 Axis 0.23285213 -0.45538588 0.85930413 Axis point 364.40220190 477.20005314 -0.00000000 Rotation angle (degrees) 0.03556470 Shift along axis 0.06353405 > select clear > view matrix models > #20,-0.17153,-0.98518,0.0003187,1118.5,0.98518,-0.17153,-0.00065914,-270.68,0.00070404,0.00020092,1,86.626 > view matrix models > #20,-0.17153,-0.98518,0.0003187,1121.8,0.98518,-0.17153,-0.00065914,-262.29,0.00070404,0.00020092,1,99.598 > view matrix models > #20,-0.17153,-0.98518,0.0003187,1111.8,0.98518,-0.17153,-0.00065914,-256.2,0.00070404,0.00020092,1,100.53 > view matrix models > #20,-0.17153,-0.98518,0.0003187,1117.4,0.98518,-0.17153,-0.00065914,-260.59,0.00070404,0.00020092,1,90.587 > view matrix models > #20,-0.17153,-0.98518,0.0003187,1110.8,0.98518,-0.17153,-0.00065914,-253.47,0.00070404,0.00020092,1,90.975 > view matrix models > #20,-0.17153,-0.98518,0.0003187,1116,0.98518,-0.17153,-0.00065914,-259.87,0.00070404,0.00020092,1,91.362 > view matrix models > #20,-0.17153,-0.98518,0.0003187,1112.1,0.98518,-0.17153,-0.00065914,-256.08,0.00070404,0.00020092,1,91.287 > ui mousemode right ""rotate selected models"" > view matrix models > #20,-0.30843,-0.94921,-0.062175,1173.1,0.95109,-0.30651,-0.03854,-178.8,0.017525,-0.071021,0.99732,112.61 > select clear > volume #20 level 0.0329 > select clear > surface style #20 solid > select clear > select #20 2 models selected > view matrix models > #20,-0.32111,-0.94035,-0.1124,1193.3,0.9421,-0.32929,0.063365,-204.92,-0.096598,-0.085547,0.99164,162.79 > view matrix models > #20,-0.30994,-0.95048,-0.022847,1159.5,0.94794,-0.31078,0.069497,-216.3,-0.073156,-0.00011748,0.99732,120 > fitmap #17 inMap #19 metric correlation Fit map Heads-N-Eclosed_122017.mrc copy gaussian in map Heads.mrc copy using 2023118 points correlation = 0.9429, correlation about mean = 0.9295, overlap = 1.537e+04 steps = 28, shift = 0.0146, angle = 0.00116 degrees Position of Heads-N-Eclosed_122017.mrc copy gaussian (#17) relative to Heads.mrc copy (#19) coordinates: Matrix rotation and translation 0.99999982 -0.00054025 -0.00027210 0.26777312 0.00054022 0.99999985 -0.00012885 -0.23211798 0.00027217 0.00012870 0.99999995 -0.12255683 Axis 0.20821519 -0.44001552 0.87351747 Axis point 388.40434993 475.91965520 -0.00000000 Rotation angle (degrees) 0.03543522 Shift along axis 0.05083442 Drag select of 19 Heads.mrc copy , 20 Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian > view matrix models > #19,0.95132,-0.28394,0.11985,401.49,0.23969,0.92608,0.29141,-467.63,-0.19374,-0.2485,0.94906,279.69,#20,-0.32652,-0.94072,0.091836,1119.3,0.88809,-0.27209,0.37049,-320.54,-0.32354,0.20253,0.92429,166.09 > view matrix models > #19,0.98541,-0.14197,-0.093906,416.15,0.17021,0.82707,0.5357,-496.09,0.0016137,-0.54387,0.83917,355.28,#20,-0.1677,-0.97981,-0.1088,1149.1,0.77062,-0.19912,0.60539,-391.38,-0.61484,0.01768,0.78845,395.58 > view matrix models > #19,0.98557,-0.13515,-0.10193,416.57,0.16874,0.83232,0.52798,-494.63,0.013479,-0.53756,0.84312,347.4,#20,-0.16022,-0.98022,-0.1162,1149.2,0.77657,-0.19785,0.59816,-391.38,-0.60932,0.0056007,0.79291,396.32 > select clear > view matrix models > #20,-0.13256,-0.98988,-0.050582,1118.1,0.82931,-0.13872,0.54129,-411.98,-0.54283,0.029807,0.83931,345.13 > select #20 2 models selected > select clear > volume #20 color #457ddb > select clear > save /Users/maryamfeghhi/Desktop/image55.png supersample 3 > select clear > save /Users/maryamfeghhi/Desktop/image56.png supersample 3 > save /Users/maryamfeghhi/Desktop/image57.png supersample 3 > save /Users/maryamfeghhi/Desktop/image58.png supersample 3 > fitmap #19 inMap #20 metric correlation Fit map Heads.mrc copy in map Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian using 784926 points correlation = 0.8294, correlation about mean = 0.4199, overlap = 6153 steps = 148, shift = 7.46, angle = 5.79 degrees Position of Heads.mrc copy (#19) relative to Heads- Emergedap10.0.927-cryosparc_P7_J622_004_volume-0_region_19671.mrc gaussian (#20) coordinates: Matrix rotation and translation -0.08364709 0.99649544 -0.00002386 48.64624100 -0.99649544 -0.08364709 0.00005109 758.05636716 0.00004892 0.00002805 1.00000000 18.33992585 Axis -0.00001156 -0.00003652 -1.00000000 Axis point 372.86778060 356.66099793 0.00000000 Rotation angle (degrees) 94.79823200 Shift along axis -18.36816942 > select clear > select #20 2 models selected > save /Users/maryamfeghhi/Desktop/image59.png supersample 3 Unsupported scale factor (0.000000) detected on Display0 QPainter::begin: Paint device returned engine == 0, type: 2 QPainter::translate: Painter not active QPainter::setPen: Painter not active QPainter::setBrush: Painter not active QPainter::drawPoints: Painter not active QPainter::end: Painter not active, aborted QPainter::begin: Paint device returned engine == 0, type: 2 QPainter::translate: Painter not active QPainter::setPen: Painter not active QPainter::setBrush: Painter not active QPainter::drawPoints: Painter not active QPainter::end: Painter not active, aborted ===== Log before crash end ===== Log: Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.10.dev202501142332 (2025-01-14) © 2016-2025 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 89.4 OpenGL renderer: Apple M3 OpenGL vendor: Apple Python: 3.11.4 Locale: en_US.UTF-8 Qt version: PyQt6 6.8.0, Qt 6.8.1 Qt runtime version: 6.8.1 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Air Model Identifier: Mac15,13 Model Number: MC9E4LL/A Chip: Apple M3 Total Number of Cores: 8 (4 performance and 4 efficiency) Memory: 16 GB System Firmware Version: 11881.101.1 OS Loader Version: 11881.101.1 Software: System Software Overview: System Version: macOS 15.4.1 (24E263) Kernel Version: Darwin 24.4.0 Time since boot: 1 day, 7 hours, 10 minutes Graphics/Displays: Apple M3: Chipset Model: Apple M3 Type: GPU Bus: Built-In Total Number of Cores: 10 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-in Liquid Retina Display Resolution: 2880 x 1864 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: alabaster: 1.0.0 anyio: 4.8.0 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.0 auditwheel: 6.2.0 babel: 2.16.0 beautifulsoup4: 4.12.3 blockdiag: 3.0.0 blosc2: 3.0.0 build: 1.2.1 certifi: 2023.11.17 cftime: 1.6.4.post1 charset-normalizer: 3.4.1 ChimeraX-AddCharge: 1.5.18 ChimeraX-AddH: 2.2.6 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.5 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.16.2 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.60 ChimeraX-AtomicLibrary: 14.1.11 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.2 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.4.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.4 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.8 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.10.dev202501142332 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.4 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2.7 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.3 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.5.1 ChimeraX-Label: 1.1.14 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.6 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.7.2 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.14.2 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.18 ChimeraX-ModelPanel: 1.5 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.14 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.7 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.2 ChimeraX-ProfileGrids: 1.0.1 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.3 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.7 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.15 ChimeraX-Shape: 1.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.0 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.19.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5.1 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.43 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.4 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.3.1 coverage: 7.6.10 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.0.10 debugpy: 1.8.11 decorator: 5.1.1 docutils: 0.21.2 executing: 2.1.0 filelock: 3.15.4 fonttools: 4.55.3 funcparserlib: 2.0.0a0 glfw: 2.8.0 grako: 3.16.5 h11: 0.14.0 h5py: 3.12.1 html2text: 2024.2.26 httpcore: 1.0.7 httpx: 0.28.1 idna: 3.10 ihm: 1.3 imagecodecs: 2024.6.1 imagesize: 1.4.1 iniconfig: 2.0.0 ipykernel: 6.29.5 ipython: 8.26.0 ipywidgets: 8.1.5 jedi: 0.19.1 Jinja2: 3.1.5 jupyter_client: 8.6.2 jupyter_core: 5.7.2 jupyterlab_widgets: 3.0.13 kiwisolver: 1.4.8 line_profiler: 4.1.3 lxml: 5.2.2 lz4: 4.3.3 MarkupSafe: 3.0.2 matplotlib: 3.9.2 matplotlib-inline: 0.1.7 msgpack: 1.0.8 ndindex: 1.9.2 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.10.2 numpy: 1.26.4 OpenMM: 8.2.0 openvr: 1.26.701 packaging: 23.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pexpect: 4.9.0 pickleshare: 0.7.5 pillow: 10.4.0 pip: 24.2 pkginfo: 1.11.1 platformdirs: 4.3.6 pluggy: 1.5.0 prompt_toolkit: 3.0.48 psutil: 6.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 pyelftools: 0.31 Pygments: 2.18.0 pynmrstar: 3.3.5 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.3401 pyparsing: 3.2.1 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.8.0 PyQt6-Qt6: 6.8.1 PyQt6-WebEngine-commercial: 6.8.0 PyQt6-WebEngine-Qt6: 6.8.1 PyQt6_sip: 13.9.1 pytest: 8.3.4 pytest-cov: 6.0.0 python-dateutil: 2.9.0.post0 pytz: 2024.2 pyzmq: 26.2.0 qtconsole: 5.5.2 QtPy: 2.4.2 qtshim: 1.1 RandomWords: 0.4.0 requests: 2.32.3 scipy: 1.14.0 setuptools: 72.1.0 sfftk-rw: 0.8.1 six: 1.16.0 sniffio: 1.3.1 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.6 Sphinx: 8.0.2 sphinx-autodoc-typehints: 2.2.3 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 stack-data: 0.6.3 superqt: 0.6.3 tables: 3.10.1 tcia_utils: 1.5.1 tifffile: 2024.7.24 tinyarray: 1.2.4 tornado: 6.4.2 traitlets: 5.14.3 typing_extensions: 4.12.2 tzdata: 2024.2 urllib3: 2.3.0 wcwidth: 0.2.13 webcolors: 24.6.0 wheel: 0.43.0 wheel-filename: 1.4.1 widgetsnbextension: 4.0.13 }}} " defect assigned normal Window Toolkit all ChimeraX