id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
17479	Crash on Mac waking from sleep	chimerax-bug-report@…	Tom Goddard	"{{{
The following bug report has been submitted:
Platform:        macOS-13.6-arm64-arm-64bit
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
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    ""path"" : ""\/Applications\/ChimeraX-1.8.app\/Contents\/Library\/Frameworks\/Python.framework\/Versions\/3.11\/lib\/python3.11\/site-packages\/lxml\/etree.cpython-311-darwin.so"",
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    ""name"" : ""_imagingmath.cpython-311-darwin.so""
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===== Log before crash start =====
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open ""/Users/nguyenlan/Documents/2B05 - Figures/N1-Cam23-sNAp - 2B05 Fabs
> contact residues.cxs"" format session

opened ChimeraX session  

> select #1/g:30-31, 53-56, 101-107 #1/h:28-32,91,92,52,65-70

213 atoms, 214 bonds, 27 residues, 1 model selected  

> view sel

> ui tool show ""Side View""

> select /h:264

Nothing selected  

> select /c:264

25 atoms, 22 bonds, 3 residues, 3 models selected  

> show sel & #!1 atoms

> style sel & #!1 stick

Changed 7 atom styles  

> color sel & #!1 byhetero

> select clear

> ui tool show ""Side View""

> save ""/Users/nguyenlan/Documents/2B05 - Figures/2B05_HC and LC-N1
> contacts_1.png"" width 1152 height 795 supersample 4 transparentBackground
> true

> close session

> open ""/Users/nguyenlan/Documents/2B05 - Figures/2B05 HC and LC loops - N1
> Cam23.cxs"" format session

opened ChimeraX session  

> close session

> open ""/Users/nguyenlan/Documents/2B05 - Figures/2B05 epitope.pdb"" format pdb

Chain information for 2B05 epitope.pdb #1  
---  
Chain | Description  
A | No description available  
B D | No description available  
C | No description available  
E G I K | No description available  
F H J L | No description available  
  

> close session

> open ""/Users/nguyenlan/Documents/2B05 - Figures/2B05-HC and LC loops vs
> N1Cam23.cxs"" format session

opened ChimeraX session  

> close session

> open ""/Users/nguyenlan/Documents/2B05 - Figures/2B05 HC and LC loops - N1
> Cam23.cxs"" format session

opened ChimeraX session  

> open /Users/nguyenlan/Downloads/bsa_coloring.defattr

Failed opening file /Users/nguyenlan/Downloads/bsa_coloring.defattr:  
Bad atom specifier (:93.B) on line 4 of bsa_coloring.defattr  

> info models

model id #1 type AtomicStructure name ""2B05 epitope.pdb""  
model id #1.1 type PseudobondGroup name ""missing structure""  
model id #1.2 type MolecularSurface name ""2B05 epitope.pdb_A SES surface""  
model id #1.3 type MolecularSurface name ""2B05 epitope.pdb_B SES surface""  
model id #1.4 type MolecularSurface name ""2B05 epitope.pdb_C SES surface""  
model id #1.5 type MolecularSurface name ""2B05 epitope.pdb_D SES surface""  
model id #2 type AtomicStructure name 4qnp  
model id #2.1 type PseudobondGroup name ""metal coordination bonds""  
model id #2.2 type MolecularSurface name ""4qnp_A SES surface""  
model id #2.3 type MolecularSurface name ""4qnp_B SES surface""  
model id #2.4 type ObjectLabels name labels  
model id #2.5 type ObjectLabels name labels  
model id #3 type AtomicStructure name 6pzw  
model id #3.1 type MolecularSurface name ""6pzw_A SES surface""  
model id #3.2 type MolecularSurface name ""6pzw_B SES surface""  
model id #3.3 type MolecularSurface name ""6pzw_C SES surface""  
model id #3.4 type MolecularSurface name ""6pzw_D SES surface""  
model id #3.5 type ObjectLabels name labels  
model id #4 type AtomicStructure name 8e6j  
model id #4.1 type MolecularSurface name ""8e6j_A SES surface""  
model id #4.2 type MolecularSurface name ""8e6j_B SES surface""  
model id #4.3 type MolecularSurface name ""8e6j_C SES surface""  
model id #4.4 type MolecularSurface name ""8e6j_D SES surface""  
model id #4.5 type ObjectLabels name labels  

> open /Users/nguyenlan/Downloads/bsa_coloring_model1.defattr

Failed opening file /Users/nguyenlan/Downloads/bsa_coloring_model1.defattr:  
Bad atom specifier (#1:93.B) on line 4 of bsa_coloring_model1.defattr  

> select :93.B

Expected an objects specifier or a keyword  

> info residues :.B

Expected a keyword  

> select :.B

Expected an objects specifier or a keyword  

> select :B

Nothing selected  

> select /b

11797 atoms, 12088 bonds, 14 pseudobonds, 1564 residues, 6 models selected  

> info chains

chain id #1/A chain_id A  
chain id #1/B chain_id B  
chain id #1/C chain_id C  
chain id #1/D chain_id D  
chain id #1/E chain_id E  
chain id #1/F chain_id F  
chain id #1/G chain_id G  
chain id #1/H chain_id H  
chain id #1/I chain_id I  
chain id #1/J chain_id J  
chain id #1/K chain_id K  
chain id #1/L chain_id L  
chain id #2/A chain_id A  
chain id #2/B chain_id B  
chain id #2/F chain_id F  
chain id #2/E chain_id E  
chain id #2/L chain_id L  
chain id #2/H chain_id H  
chain id #3/A chain_id A  
chain id #3/I chain_id I  
chain id #3/K chain_id K  
chain id #3/D chain_id D  
chain id #3/E chain_id E  
chain id #3/F chain_id F  
chain id #3/G chain_id G  
chain id #3/J chain_id J  
chain id #3/C chain_id C  
chain id #3/B chain_id B  
chain id #3/L chain_id L  
chain id #3/H chain_id H  
chain id #4/A chain_id A  
chain id #4/L chain_id L  
chain id #4/H chain_id H  
chain id #4/B chain_id B  
chain id #4/I chain_id I  
chain id #4/E chain_id E  
chain id #4/C chain_id C  
chain id #4/J chain_id J  
chain id #4/F chain_id F  
chain id #4/D chain_id D  
chain id #4/K chain_id K  
chain id #4/G chain_id G  

> chain id #1/A chain_id A

Unknown command: chain id #1/A chain_id A  

> chain id #1/B chain_id B

Unknown command: chain id #1/B chain_id B  

> chain id #1/C chain_id C

Unknown command: chain id #1/C chain_id C  

> chain id #1/D chain_id D

Unknown command: chain id #1/D chain_id D  

> chain id #1/E chain_id E

Unknown command: chain id #1/E chain_id E  

> chain id #1/F chain_id F

Unknown command: chain id #1/F chain_id F  

> chain id #1/G chain_id G

Unknown command: chain id #1/G chain_id G  

> chain id #1/H chain_id H

Unknown command: chain id #1/H chain_id H  

> chain id #1/I chain_id I

Unknown command: chain id #1/I chain_id I  

> chain id #1/J chain_id J

Unknown command: chain id #1/J chain_id J  

> chain id #1/K chain_id K

Unknown command: chain id #1/K chain_id K  

> chain id #1/L chain_id L

Unknown command: chain id #1/L chain_id L  

> open /Users/nguyenlan/Downloads/bsa_coloring_clean.defattr

Failed opening file /Users/nguyenlan/Downloads/bsa_coloring_clean.defattr:  
Bad atom specifier (:93.B) on line 3 of bsa_coloring_clean.defattr  

> select /b:93

28 atoms, 27 bonds, 4 residues, 4 models selected  

> open /Users/nguyenlan/Downloads/bsa_coloring_slash_format.defattr

Summary of feedback from opening
/Users/nguyenlan/Downloads/bsa_coloring_slash_format.defattr  
---  
note | Assigned attribute 'bsa_value' to 108 residues using match mode: any  
  

> color byattribute bsa_value palette blue:white:red target r

9105 residues, atom bsa_value range 14 to 146  

> select clear

> color byattribute bsa_value palette blue:white:red range 20,150 target r

9105 residues, atom bsa_value range 14 to 146  

> surface

> color byattribute bsa_value palette blue:white:red target s

42 surfaces, atom bsa_value range 14 to 146  

> show only /a /b /c /d

Expected a keyword  

> hide /e /f /g /h/ k /l /i /j

> select /e /f /g /h/ k /l /i /j

27792 atoms, 28391 bonds, 8 pseudobonds, 3694 residues, 5 models selected  

> hide sel & #!1 surfaces

> select /c:217

22 atoms, 19 bonds, 3 residues, 3 models selected  

> color (#!1 & sel) gray

> select clear

> color byattribute bsa_value palette #440154:#21908C:#FDE725 target r

9105 residues, atom bsa_value range 14 to 146  

> surface color byattribute bsa_value palette #440154:#21908C:#FDE725 target r

Invalid ""color"" argument: Invalid color name or specifier  

> color byattribute bsa_value palette #440154:#21908C:#FDE725 target s

42 surfaces, atom bsa_value range 14 to 146  

> close session

> open /Users/nguyenlan/Downloads/bsa_coloring_slash_format.defattr format
> defattr

Summary of feedback from opening
/Users/nguyenlan/Downloads/bsa_coloring_slash_format.defattr  
---  
note | Assigned attribute 'bsa_value' to 0 residues using match mode: any  
  

> open /Users/nguyenlan/Downloads/bsa_coloring_slash_format.defattr format
> defattr

Summary of feedback from opening
/Users/nguyenlan/Downloads/bsa_coloring_slash_format.defattr  
---  
note | Assigned attribute 'bsa_value' to 0 residues using match mode: any  
  

> open ""/Users/nguyenlan/Documents/2B05 - Figures/2B05 HC and LC loops - N1
> Cam23.cxs"" format session

opened ChimeraX session  

> select #1/c: 93, 94, 95,353, 354, 355, 358, 375, 377, 378, 384, 386, 388,
> 389, 449, 450, 451

144 atoms, 142 bonds, 17 residues, 1 model selected  

> select #1/b: 93, 94, 95,353, 354, 355, 358, 375, 377, 378, 384, 386, 388,
> 389, 449, 450, 451

144 atoms, 142 bonds, 17 residues, 1 model selected  

> select #1/d:214, 215, 216, 219, 254, 256, 262, 263, 264, 265, 266

95 atoms, 93 bonds, 11 residues, 1 model selected  

> select #1/c:214, 215, 216, 219, 254, 256, 262, 263, 264, 265, 266

95 atoms, 93 bonds, 11 residues, 1 model selected  

> select #1/c:217

9 atoms, 8 bonds, 1 residue, 1 model selected  

> color (#!1 & sel) gray

> color (#!1 & sel) dark gray

> select clear

> view orient

> turn x 90

> turn y 45

> open /Users/nguyenlan/Downloads/bsa_coloring_slash_format.defattr

Summary of feedback from opening
/Users/nguyenlan/Downloads/bsa_coloring_slash_format.defattr  
---  
note | Assigned attribute 'bsa_value' to 100 residues using match mode: any  
  

> color byattribute bsa_value palette #440154:#21908C:#FDE725 target s

14 surfaces, atom bsa_value range 5.2 to 93.2  

> color byattribute bsa_value palette #FDE725:#21908C:#440154 target s

14 surfaces, atom bsa_value range 5.2 to 93.2  

> color byattribute bsa_value palette #440154:#21908C:#FDE725 range 5,95
> target s

14 surfaces, atom bsa_value range 5.2 to 93.2  

> color byattribute bsa_value palette #FDE725:#21908C:#440154 range 5,95
> target s

14 surfaces, atom bsa_value range 5.2 to 93.2  

> color byattribute bsa_value palette #2166AC:#F7F7F7:#B2182B range 5,95
> target s

14 surfaces, atom bsa_value range 5.2 to 93.2  

> color byattribute bsa_value palette #F7F7F7:#2166AC:#B2182B range 5,95
> target s

14 surfaces, atom bsa_value range 5.2 to 93.2  

> color byattribute bsa_value palette #2166AC:#F7F7F7:#B2182B range 5,95
> target s

14 surfaces, atom bsa_value range 5.2 to 93.2  

> color byattribute bsa_value palette #FDE725:#21908C:#440154 range 5,95
> target s

14 surfaces, atom bsa_value range 5.2 to 93.2  

> color byattribute bsa_value palette #F7F7F7:#2166AC:#B2182B range 5,95
> target s

14 surfaces, atom bsa_value range 5.2 to 93.2  

> color byattribute bsa_value palette cyan:white:magenta range 5,95 target s

14 surfaces, atom bsa_value range 5.2 to 93.2  

> color byattribute bsa_value palette #F7F7F7:#2166AC:#B2182B range 5,95
> target s

14 surfaces, atom bsa_value range 5.2 to 93.2  

> color byattribute bsa_value palette #F7F7F7:#2166AC:#B2182B range 5,95
> target s

14 surfaces, atom bsa_value range 5.2 to 93.2  


===== Log before crash end =====

Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 Metal - 83.1
OpenGL renderer: Apple M2 Pro
OpenGL vendor: Apple

Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: Mac14,10
      Model Number: MNW83LL/A
      Chip: Apple M2 Pro
      Total Number of Cores: 12 (8 performance and 4 efficiency)
      Memory: 16 GB
      System Firmware Version: 8422.141.2
      OS Loader Version: 8422.141.2

Software:

    System Software Overview:

      System Version: macOS 13.6 (22G120)
      Kernel Version: Darwin 22.6.0
      Time since boot: 5 days, 23 minutes

Graphics/Displays:

    Apple M2 Pro:

      Chipset Model: Apple M2 Pro
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 19
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        Dell P2723D:
          Resolution: 2560 x 1440 (QHD/WQHD - Wide Quad High Definition)
          UI Looks like: 2560 x 1440 @ 60.00Hz
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Rotation: Supported
        Hp Z27K G3:
          Resolution: 2160 x 3840
          UI Looks like: 1080 x 1920 @ 60.00Hz
          Mirror: Off
          Online: Yes
          Rotation: Supported


Installed Packages:
    alabaster: 0.7.16
    appdirs: 1.4.4
    appnope: 0.1.4
    asttokens: 2.4.1
    Babel: 2.15.0
    beautifulsoup4: 4.12.3
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 1.2.1
    certifi: 2023.11.17
    cftime: 1.6.4
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.17
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.5
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.7
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.57.1
    ChimeraX-AtomicLibrary: 14.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.4.6
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.12.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.7
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.6
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.8
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.3
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2.4
    ChimeraX-DiffPlot: 1.0
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.10
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.3
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7.1
    ChimeraX-MedicalToolbar: 1.0.3
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.17
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13.5
    ChimeraX-PDB: 2.7.5
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.1
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.4.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.0.15
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.16.5
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.39.1
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.3
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    contourpy: 1.2.1
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 3.0.10
    debugpy: 1.8.1
    decorator: 5.1.1
    docutils: 0.20.1
    executing: 2.0.1
    filelock: 3.13.4
    fonttools: 4.53.0
    funcparserlib: 2.0.0a0
    glfw: 2.7.0
    grako: 3.16.5
    h5py: 3.11.0
    html2text: 2024.2.26
    idna: 3.7
    ihm: 1.0
    imagecodecs: 2024.1.1
    imagesize: 1.4.1
    ipykernel: 6.29.2
    ipython: 8.21.0
    ipywidgets: 8.1.3
    jedi: 0.19.1
    jinja2: 3.1.4
    jupyter-client: 8.6.0
    jupyter-core: 5.7.2
    jupyterlab-widgets: 3.0.11
    kiwisolver: 1.4.5
    line-profiler: 4.1.2
    lxml: 5.2.1
    lz4: 4.3.3
    MarkupSafe: 2.1.5
    matplotlib: 3.8.4
    matplotlib-inline: 0.1.7
    msgpack: 1.0.8
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.0
    numpy: 1.26.4
    openvr: 1.26.701
    packaging: 23.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pexpect: 4.9.0
    pillow: 10.3.0
    pip: 24.0
    pkginfo: 1.10.0
    platformdirs: 4.2.2
    prompt-toolkit: 3.0.47
    psutil: 5.9.8
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pygments: 2.17.2
    pynmrstar: 3.3.4
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.3401
    pyparsing: 3.1.2
    pyproject-hooks: 1.1.0
    PyQt6-commercial: 6.6.1
    PyQt6-Qt6: 6.6.3
    PyQt6-sip: 13.6.0
    PyQt6-WebEngine-commercial: 6.6.0
    PyQt6-WebEngine-Qt6: 6.6.3
    python-dateutil: 2.9.0.post0
    pytz: 2024.1
    pyzmq: 26.0.3
    qtconsole: 5.5.1
    QtPy: 2.4.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.13.0
    setuptools: 69.5.1
    setuptools-scm: 8.0.4
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.5
    sphinx: 7.2.6
    sphinx-autodoc-typehints: 2.0.1
    sphinxcontrib-applehelp: 1.0.8
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.6
    sphinxcontrib-htmlhelp: 2.0.5
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.7
    sphinxcontrib-serializinghtml: 1.1.10
    stack-data: 0.6.3
    superqt: 0.6.3
    tables: 3.8.0
    tcia-utils: 1.5.1
    tifffile: 2024.1.30
    tinyarray: 1.2.4
    tornado: 6.4.1
    traitlets: 5.14.2
    typing-extensions: 4.12.2
    tzdata: 2024.1
    urllib3: 2.2.1
    wcwidth: 0.2.13
    webcolors: 1.13
    wheel: 0.43.0
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.11
}}}
"	defect	closed	normal		Window Toolkit		duplicate						all	ChimeraX