id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
17478	ChimeraX bug report submission	sadik@…		"{{{
The following bug report has been submitted:
Platform:        macOS-15.2-arm64-arm-64bit
ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC)
Description
Last time you used ChimeraX it crashed.
This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX.
Fatal Python error: Segmentation fault

Thread 0x0000000394203000 (most recent call first):
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 324 in wait
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 622 in wait
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1392 in run
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 1038 in _bootstrap_inner
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/threading.py"", line 995 in _bootstrap

Current thread 0x00000001f7cec240 (most recent call first):
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 330 in event_loop
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1054 in init
  File ""/Applications/ChimeraX-1.9.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1217 in 
  File """", line 88 in _run_code
  File """", line 198 in _run_module_as_main

Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.pdb_lib._load_libs, chimerax.map._map, charset_normalizer.md, requests.packages.charset_normalizer.md, requests.packages.chardet.md, PIL._imaging, kiwisolver._cext, chimerax.surface._surface, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, lxml._elementpath, lxml.etree, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, psutil._psutil_osx, psutil._psutil_posix, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.pdb._pdbio, PIL._imagingmath, chimerax.atom_search.ast, chimerax.chem_group._chem_group (total: 62)


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    ""name"" : ""Foundation"",
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    ""CFBundleIdentifier"" : ""com.apple.framework.IOKit"",
    ""size"" : 921600,
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    ""path"" : ""\/System\/Library\/Frameworks\/IOKit.framework\/Versions\/A\/IOKit"",
    ""name"" : ""IOKit""
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    ""arch"" : ""arm64e"",
    ""base"" : 7235018752,
    ""CFBundleShortVersionString"" : ""104.1.2"",
    ""CFBundleIdentifier"" : ""com.apple.IOGPU"",
    ""size"" : 270336,
    ""uuid"" : ""5ca2b78e-dacb-3df1-bf2c-6d28b96e4437"",
    ""path"" : ""\/System\/Library\/PrivateFrameworks\/IOGPU.framework\/Versions\/A\/IOGPU"",
    ""name"" : ""IOGPU"",
    ""CFBundleVersion"" : ""104.1.2""
  },
  {
    ""source"" : ""P"",
    ""arch"" : ""arm64e"",
    ""base"" : 6864637952,
    ""CFBundleShortVersionString"" : ""367.6"",
    ""CFBundleIdentifier"" : ""com.apple.Metal"",
    ""size"" : 2596864,
    ""uuid"" : ""ef329456-ed4c-3eae-92df-df329f660998"",
    ""path"" : ""\/System\/Library\/Frameworks\/Metal.framework\/Versions\/A\/Metal"",
    ""name"" : ""Metal"",
    ""CFBundleVersion"" : ""367.6""
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    ""base"" : 6679760896,
    ""size"" : 290816,
    ""uuid"" : ""9c7ff4a8-9d78-3aed-b64d-979574a26d8f"",
    ""path"" : ""\/usr\/lib\/system\/libdispatch.dylib"",
    ""name"" : ""libdispatch.dylib""
  }
],
  ""sharedCache"" : {
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  ""size"" : 4860870656,
  ""uuid"" : ""0b27680f-0a45-316e-92fb-11e600c59770""
},
  ""vmSummary"" : ""ReadOnly portion of Libraries: Total=1.9G resident=0K(0%) swapped_out_or_unallocated=1.9G(100%)\nWritable regions: Total=4.3G written=2500K(0%) resident=2500K(0%) swapped_out=0K(0%) unallocated=4.3G(100%)\n\n                                VIRTUAL   REGION \nREGION TYPE                        SIZE    COUNT (non-coalesced) \n===========                     =======  ======= \nAccelerate framework               896K        7 \nActivity Tracing                   256K        1 \nCG image                          1168K       64 \nColorSync                          768K       38 \nCoreAnimation                     9328K      253 \nCoreGraphics                        80K        5 \nCoreImage                           64K        2 \nCoreUI image data                 3680K       37 \nFoundation                          32K        2 \nKernel Alloc Once                   32K        1 \nMALLOC                             3.4G      129 \nMALLOC guard page                  288K       18 \nMach message                        64K        3 \nOpenGL GLSL                        384K        4 \nSTACK GUARD                        688K       43 \nStack                            218.5M       44 \nStack Guard                       56.0M        1 \nVM_ALLOCATE                      342.6M      258 \nVM_ALLOCATE (reserved)           192.0M        1         reserved VM address space (unallocated)\n__AUTH                            5285K      672 \n__AUTH_CONST                      70.8M      920 \n__CTF                               824        1 \n__DATA                            33.5M     1070 \n__DATA_CONST                      34.3M     1086 \n__DATA_DIRTY                      2763K      342 \n__FONT_DATA                        2352        1 \n__GLSLBUILTINS                    5174K        1 \n__INFO_FILTER                         8        1 \n__LINKEDIT                       638.2M      160 \n__OBJC_RW                         2373K        1 \n__TEXT                             1.3G     1106 \n__TPRO_CONST                       272K        2 \ndyld private memory                 32K        2 \nmapped file                      290.0M       66 \nowned unmapped memory            133.3M        1 \npage table in kernel              2500K        1 \nshared memory                     3216K       28 \n===========                     =======  ======= \nTOTAL                              6.7G     6372 \nTOTAL, minus reserved VM space     6.5G     6372 \n"",
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      ""factorPackIds"" : {

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}
===== Log before crash start =====
UCSF ChimeraX version: 1.9 (2024-12-11)  
© 2016-2024 Regents of the University of California. All rights reserved.  

> open /Users/sdk/Documents/Sm_Paper/Data_and_Figures/F4_HEME_CN/F4.cxs

Opened P5_J1190_Final_sharp.mrc as #1, grid size 360,360,360, pixel 0.825,
shown at level 0.08, step 1, values float32  
Opened P5_J1190_Final_sharp.mrc copy as #4, grid size 360,360,360, pixel
0.825, shown at level 0.14, step 1, values float32  
Opened P5_J1190_Final_sharp.mrc copy as #5, grid size 360,360,360, pixel
0.825, shown at level 0.08, step 1, values float32  
Log from Mon Apr 21 22:27:24 2025 Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.9 (2024-12-11)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> /Users/sdk/Documents/Sm_Paper/Structures_Maps/SM_HEME_KCN/maps/P5_J1190_Final_sharp.mrc

Opened P5_J1190_Final_sharp.mrc as #1, grid size 360,360,360, pixel 0.825,
shown at level 0.0413, step 2, values float32  

> open /Users/sdk/Documents/Sm_Paper/Structures_Maps/SM_HEME_KCN/Original-
> Refinement/RealSpaceRefine_61/Sm_KCN_Ref56_No-HEME-
> coot-3_real_space_refined_061.pdb

Chain information for Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb
#2  
---  
Chain | Description  
A B C D | No description available  
  

> volume #1 level 0.09

> open /Users/sdk/Documents/Sm_Paper/Data_and_Figures/preset.cxc

> set bgColor white

> lighting soft

> graphics silhouettes true width 2.5

> camera ortho

executed preset.cxc  

> surface dust #1 size 8.25

> volume #1 step 1

> volume #1 level 0.08

> color #2: start-320 cornflower blue

> color #2: 321-532 plum

> color #2: 533-end pink

> color #2: 310-320 orange red

> ui tool show ""Color Zone""

> color zone #1 near #2 distance 4.95

> color zone #1 near #2 distance 4.5

> color zone #1 near #2 distance 4.82

> color zone #1 near #2 distance 4

[Repeated 1 time(s)]

> hide #!1 models

> turn x -90

> undo

> show #!1 models

> hide #!1 models

> show #!1 models

> hide #!1 models

> ui tool show ""Side View""

> turn x -90

> show #!1 models

> hide #2 models

> show #2 models

> hide #!1 models

> show #!1 models

> turn x 90

> hide #!1 models

> show #!1 models

> ui tool show ""Scale Bar""

> scalebar 50

> turn x -90

> turn x 90

> volume copy #1

Opened P5_J1190_Final_sharp.mrc copy as #4, grid size 360,360,360, pixel
0.825, shown at step 1, values float32  

> surface dust #4 size 8.25

> ui tool show ""Color Zone""

> color zone #4 near #2 distance 4.95

> turn x -90

> volume #4 level 0.1105

> color zone #4 near #2 distance 2

[Repeated 1 time(s)]

> transparency #4 50

> color zone #4 near #2 distance 2.5

> transparency #4 50

> transparency #4 20

> transparency #4 80

> volume #4 level 0.1218

> color zone #4 near #2 distance 2.5

> transparency #4 80

> transparency #4 50

> turn x 90

> turn x -90

> turn x 90

> turn x -90

> hide #!4 models

> show #!1 models

> hide #!1 models

> show #!4 models

> hide #!4 models

> show #!4 models

> volume copy #1

Opened P5_J1190_Final_sharp.mrc copy as #5, grid size 360,360,360, pixel
0.825, shown at step 1, values float32  

> surface dust #4 size 8.25

> surface dust #5 size 8.25

> ui mousemode right ""map eraser""

Can only have one displayed volume when erasing  

[Repeated 1 time(s)]

> hide #!3 models

> show #!3 models

> hide #6 models

> show #6 models

> hide #6 models

> show #6 models

> hide #!5 models

> show #!5 models

> hide #!5 models

> show #!5 models

Can only have one displayed volume when erasing  

> close #6

> close #5

> volume copy #1

Opened P5_J1190_Final_sharp.mrc copy as #5, grid size 360,360,360, pixel
0.825, shown at step 1, values float32  

> surface dust #4 size 8.25

> surface dust #5 size 8.25

> ui mousemode right ""map eraser""

[Repeated 2 time(s)]

Can only have one displayed volume when erasing  

[Repeated 2 time(s)]

> hide #!3 models

> hide #!4 models

> show #!4 models

> hide #!4 models

> show #!4 models

> hide #!5 models

> show #!5 models

> hide #!5 models

> close #6

> show #!1 models

> hide #!1 models

> hide #!4 models

> turn x -90

> show #!5 models

> hide #2 models

> ui mousemode right ""map eraser""

> volume erase #5 center 165.92,115.63,151.33 radius 17.52 outside true

[Repeated 1 time(s)]

> close #6

> close #5

> show #!4 models

> volume copy #1

Opened P5_J1190_Final_sharp.mrc copy as #5, grid size 360,360,360, pixel
0.825, shown at step 1, values float32  

> surface dust #4 size 8.25

> surface dust #5 size 8.25

> hide #!4 models

> ui mousemode right ""map eraser""

> volume erase #5 center 181.35,131.89,146.11 radius 10.098 outside true

> volume erase #5 center 177.62,131.63,132.22 radius 10.098

> volume erase #5 center 177.05,121.82,132.84 radius 10.098

> volume erase #5 center 186.62,130.65,155.87 radius 10.098

> hide #6 models

> show #!4 models

> show #2 models

> hide #!4 models

> hide #2 models

> show #6 models

> volume erase #5 center 179.55,145.8,148.52 radius 10.098

> hide #6 models

> show #!3 models

> hide #!3 models

> show #!4 models

> show #2 models

> hide #!4 models

> show #6 models

> hide #2 models

> volume erase #5 center 174,137.89,152.9 radius 10.098

> hide #6 models

> show #2 models

> show #!1 models

> hide #2 models

> show #2 models

> hide #2 models

> hide #!1 models

> show #2 models

> show #!1 models

> hide #!5 models

> show #!5 models

> hide #2 models

> show #2 models

> hide #2 models

> turn x -90

> show #2 models

> hide #!1 models

> show #!1 models

> turn x 90

> turn x -90

> hide #!1 models

> show #!1 models

> show #!3 models

> hide #2 models

> save /Users/sdk/Desktop/image1.png supersample 3

> turn x 90

> turn x -90

> turn x -60

> turn x 60

> turn x -90

> show #2 models

> hide #!1 models

> show #!1 models

> turn x 90

> turn x -45

> hide #!1 models

> show #!4 models

> hide #!5 models

> transparency #4 20

> transparency #4 80

> show #!5 models

> transparency #4 50

> show #!1 models

> hide #!4 models

> hide #!5 models

> show #!5 models

> hide #!3 models

> show #!3 models

> turn x -45

> undo

> turn x -45

> turn x -90

> turn x 90

> turn x -90

> turn x 90

> turn x -45

> turn x 45

> turn x -60

> turn x 60

> hide #2 models

> turn x -90

> turn x 90

> save /Users/sdk/Desktop/image1.png supersample 3

> show #2 models

> hide #!1 models

> show #!1 models

> hide #2 models

> show #2 models

> hide #!1 models

> save /Users/sdk/Desktop/image2.png supersample 3

> show #!1 models

> hide #2 models

> turn x -60

> save /Users/sdk/Desktop/image3.png supersample 3

> show #2 models

> hide #!1 models

> hide #!5 models

> ui tool show ""Side View""

> hide #!3 models

> save /Users/sdk/Desktop/image4.png supersample 3

> turn x 60

> save /Users/sdk/Desktop/image5.png supersample 3

> show #!5 models

> hide #!5 models

> show #!4 models

> show #!5 models

> hide #!5 models

> show #!5 models

> turn x -60

> transparency #4 50

> transparency #4 90

> transparency #4 70

> ui tool show ""Volume Viewer""

> volume #4 level 0.1432

> volume #4 level 0.1405

> ui tool show ""Color Zone""

> color zone #4 near #2 distance 4.95

> color zone #4 near #2 distance 3

[Repeated 1 time(s)]

> transparency #4 70

> save /Users/sdk/Desktop/image6.png supersample 3

> save /Users/sdk/Documents/Sm_Paper/Data_and_Figures/F4_HEME_CN/F4.cxs

——— End of log from Mon Apr 21 22:27:24 2025 ———

opened ChimeraX session  

> save /Users/sdk/Desktop/image1.png supersample 3

> show #!1 models

> hide #!1 models

> hide #2 models

> show #2 models

> hide #!4 models

> select #2:310-end

10608 atoms, 10724 bonds, 1368 residues, 1 model selected  

> hide sel cartoons

> show sel cartoons

> turn x -90

> turn x 90

> hide sel cartoons

> show sel cartoons

> combine #1

No structures specified  

> combine #2

> hide #2 models

> show #!4 models

> show #!3 models

> hide #!3 models

> show #2 models

> hide #2 models

> show #!1 models

> hide #!1 models

> open
> /Users/sdk/Documents/Sm_Paper/Data_and_Figures/F4_HEME_CN/Local_res/cryosparc_P5_J1437_map_locres.mrc

Opened cryosparc_P5_J1437_map_locres.mrc as #7, grid size 360,360,360, pixel
0.825, shown at level 8.21, step 2, values float32  

> volume #5 level 0.05225

> volume #7 level 9.719

> hide #!7 models

> hide #!5 models

> show #!5 models

> hide #!5 models

> hide #!4 models

> show #!4 models

> ui tool show ""Surface Color""

> color sample #4.1 map #7 palette 3,#0000ff:4,#ffffff:5,#ff0000

Map values for surface ""surface"": minimum 3.123, mean 3.833, maximum 6.173  

> volume #4 level 0.1214

> color sample #4.1 map #7 palette 3,#0000ff:4,#00fdff:5,#00f900

Map values for surface ""surface"": minimum 3.123, mean 3.938, maximum 7.734  

> volume #4 level 0.08

> volume #4 level 0.15

> hide #!4 models

> show #!4 models

> hide #6 models

> show #6 models

> hide #6 models

> volume #4 level 0.1404

> show #2 models

> turn x -90

> hide #!4 models

> select clear

> turn x -90

> show #!4 models

> hide #!4 models

> turn x -90

> turn x 90

> show #!4 models

> turn x -60

> volume #4 level 0.12

> volume #4 level 0.13

> volume #4 level 0.14

> hide #2 models

> show #2 models

> color sample #4.1 map #7 palette 3,#0000ff:4,#00fdff:5,#00f900:6,#ff9300

Map values for surface ""surface"": minimum 3.123, mean 3.836, maximum 6.177  

> key blue:3 #00fdff:4 #00f900:5 #ff9300:6 showTool true

> ui mousemode right ""color key""

> key pos 0.708614,0.00174751

> key pos 0.855758,0.0425812 size 0.0894139,0.0387718

> key pos 0.870275,0.030531 size 0.110874,0.0372471

> key pos 0.897523,0.0505824 size 0.0943139,0.0412757

> key pos 0.881038,0.0455542 size 0.102553,0.0455593

> save /Users/sdk/Desktop/image2.png supersample 3

> hide #!4 models

> turn x -90

> turn x 90

> turn x -60

> show #!4 models

> hide #!4 models

> show #!4 models

> hide #2 models

> show #2 models

> show #!1 models

> hide #!4 models

> volume #4 level 0.08974

> volume #1 level 0.05846

> volume #1 level 0.06

> volume #1 level 0.08

> volume #1 level 0.07

> hide #!1 models

> volume #4 level 0.1

> hide #2 models

> show #!7 models

> volume #7 step 1

> volume #7 level 7.69

> volume #7 level 8.737

> volume #7 level 6.446

> key pos 0.796201,0.175016

> ui tool show ""Side View""

> show #2 models

> hide #!4 models

> hide #8 models

> select #2/A:321-end #2/D:321-end

5158 atoms, 5216 bonds, 662 residues, 1 model selected  

> select ~sel & ##selected

9958 atoms, 10100 bonds, 1258 residues, 1 model selected  

> hide sel cartoons

> ui tool show ""Side View""

> turn y 180

> undo

> turn z 180

> undo

> turn x 180

> save /Users/sdk/Desktop/image3.png supersample 3

> show sel cartoons

> key pos 0.602484,0.742585 size 0.00601067,0.0363036

> hide sel atoms

> select #2/B:321-end #2/C:321-end

5158 atoms, 5216 bonds, 662 residues, 1 model selected  

> select ~sel & ##selected

9958 atoms, 10100 bonds, 1258 residues, 1 model selected  

> hide sel cartoons

> show sel cartoons

> hide sel cartoons

> show sel cartoons

> turn x -90

> turn x 90

> turn y 45

> undo

> turn y -45

> hide sel cartoons

> undo

> turn y 45

> turn y -30

> turn x -30

> undo

> turn y 45

> turn x -90

> turn y -45

> hide sel cartoons

> turn y 45

> turn y 90

> turn y -90

> turn z -90

> turn z 90

> turn z -90

> turn z -45

> show sel cartoons

> turn x -90

> turn x 90

> turn x -60

> turn y -60

> hide sel cartoons

> turn y 60

> show sel cartoons

> turn y 90

> hide sel cartoons

> undo

> turn x 60

> turn y 90

> hide sel cartoons

> show sel cartoons

> turn y -90

> undo

> turn x -90

> turn x 90

> turn y 90

> turn x -45

> hide sel cartoons

> show sel cartoons

> turn x -5

> turn x -90

> turn x 90

> turn y 90

> hide sel cartoons

> show sel cartoons

> turn x -90

> undo

> turn y 60

> turn x -90

> turn x 30

> hide sel atoms

> hide sel cartoons

> select ~sel & ##selected

5158 atoms, 5216 bonds, 662 residues, 1 model selected  

> save /Users/sdk/Documents/Sm_Paper/Data_and_Figures/F4_HEME_CN/HEME-
> CN_DHH_rotated.pdb models #2 selectedOnly true relModel #1

> open /Users/sdk/Documents/Sm_Paper/Data_and_Figures/F4_HEME_CN/HEME-
> CN_DHH_rotated.pdb

Summary of feedback from opening
/Users/sdk/Documents/Sm_Paper/Data_and_Figures/F4_HEME_CN/HEME-
CN_DHH_rotated.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 TYR A 184 ILE A 188 1 5  
Start residue of secondary structure not found: HELIX 2 2 ASP A 193 SER A 213
1 21  
Start residue of secondary structure not found: HELIX 3 3 TYR A 232 GLN A 240
1 9  
Start residue of secondary structure not found: HELIX 4 4 GLU A 244 GLU A 255
1 12  
Start residue of secondary structure not found: HELIX 5 5 HIS A 273 VAL A 289
1 17  
89 messages similar to the above omitted  
  
Chain information for HEME-CN_DHH_rotated.pdb #9  
---  
Chain | Description  
B C | No description available  
  

> select ~sel & ##selected

9958 atoms, 10100 bonds, 1258 residues, 1 model selected  

> show sel cartoons

> close #9

> open /Users/sdk/Documents/Sm_Paper/Data_and_Figures/F4_HEME_CN/HEME-
> CN_DHH_rotated.pdb

Summary of feedback from opening
/Users/sdk/Documents/Sm_Paper/Data_and_Figures/F4_HEME_CN/HEME-
CN_DHH_rotated.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 TYR A 184 ILE A 188 1 5  
Start residue of secondary structure not found: HELIX 2 2 ASP A 193 SER A 213
1 21  
Start residue of secondary structure not found: HELIX 3 3 TYR A 232 GLN A 240
1 9  
Start residue of secondary structure not found: HELIX 4 4 GLU A 244 GLU A 255
1 12  
Start residue of secondary structure not found: HELIX 5 5 HIS A 273 VAL A 289
1 17  
89 messages similar to the above omitted  
  
Chain information for HEME-CN_DHH_rotated.pdb #9  
---  
Chain | Description  
B C | No description available  
  

> close #9

> hide sel cartoons

> ui mousemode right rotate

> ui mousemode right select

> show sel cartoons

> select clear

> turn x -90

> turn x 90

> select #2/B:321-end #2/C:321-end

5158 atoms, 5216 bonds, 662 residues, 1 model selected  

> select ~sel & ##selected

9958 atoms, 10100 bonds, 1258 residues, 1 model selected  

> turn x 30

> undo

> turn x -90

> turn x 90

> turn x -30

> turn y 60

> undo

> turn y -30

> undo

> turn y 90

> undo

> tunr y -60

Unknown command: tunr y -60  

> turn y -60

> undo

> turn y -60

> hide sel cartoons

> show sel cartoons

> undo

> turn y 30

> undo

> turn y 45

> undo

> turn y -45

> turn x -30

> undo

> turn z -30

> undo

> turn x 30

> turn x -90

> turn x 90

> select clear

> turn x 90

> turn y 90

> turn x -90

> turn x 90

> turn z 90

> undo

> turn x -90

> turn x 90

> turn y -90

> select #2/B:321-end #2/C:321-end

5158 atoms, 5216 bonds, 662 residues, 1 model selected  

> hide sel cartoons

> show sel cartoons

> select ~sel & ##selected

9958 atoms, 10100 bonds, 1258 residues, 1 model selected  

> hide sel cartoons

> show sel cartoons

> turn z 45

> hide sel cartoons

> show sel cartoons

> turn z -90

> hide sel cartoons

> turn z 90

> show sel cartoons

> turn x -90

> turn x 90

> turn y -90

> hide sel cartoons

> turn x 30

> turn x 15

> turn x -45

> show sel cartoons

> hide sel cartoons

> turn x -30

> undo

> turn x 30

> turn y 30

> turn z 30

> undo

> turn z -30

> undo

> turn z 15

> undo

> turn z -15

> show sel cartoons

> hide sel cartoons

> show sel cartoons

> turn z 15

> turn y 60

> turn y 30

> undo

> turn z 30

> turn x -90

> undo

> turn z 30

> undo

> turn z -30

> turn y 60

> undo

> turn x 30

> undo

> turn x 030

> undo

> turn x 30

> undo

> turn x -30

> hide sel cartoons

> show sel cartoons

> turn x -90

> turn x 90

> turn y 60

> undo

> turn y -60

> turn z 45

> undo

> turn z -45

> undo

> turn x -30

> undo

> turn x -30

> undo

> turn x 30

> hide sel cartoons

> show sel cartoons

> select clear

> select #2/B:321-end #2/C:321-end

5158 atoms, 5216 bonds, 662 residues, 1 model selected  

> select ~sel & ##selected

9958 atoms, 10100 bonds, 1258 residues, 1 model selected  

> turn x -90

> turn x 90

> select clear

> select #2:310-end

10608 atoms, 10724 bonds, 1368 residues, 1 model selected  

> hide sel cartoons

> color #2/A light salmon

> color #2/B light salmon

> select #2/A:start-310

1131 atoms, 1151 bonds, 139 residues, 1 model selected  

> ui tool show Contacts

> contacts sel ignoreHiddenModels true

885 contacts  

> ui tool show Contacts

> contacts sel setAttrs true restrict cross ignoreHiddenModels true reveal
> true

127 contacts  

> ui tool show Contacts

> contacts sel setAttrs true restrict cross ignoreHiddenModels true reveal
> true log true
    
    
    Allowed overlap: -0.4
    H-bond overlap reduction: 0.4
    Ignore contacts between atoms separated by 4 bonds or less
    Detect intra-residue contacts: False
    Detect intra-molecule contacts: True
    
    127 contacts
                                     atom1                                                                    atom2                                   overlap  distance
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 182 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D THR 322 OG1   0.266    3.074
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 ND1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CD2   0.259    3.141
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 217 CD2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B ILE 176 CD1   0.213    3.427
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 183 ND2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D ALA 326 CB    0.203    3.317
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 193 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 204 CB    0.202    3.558
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A THR 230 CA   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B HIS 273 NE2   0.190    3.330
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 219 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B TYR 227 CE2   0.186    3.454
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 274 CA   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 217 CB    0.185    3.575
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 ND2   0.170    3.350
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 204 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 193 CB    0.162    3.598
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B THR 230 CA    0.149    3.491
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 217 CE2   0.132    3.388
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A THR 230 CA   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B HIS 273 CE1   0.126    3.514
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 220 NH2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 193 CB    0.119    3.401
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 217 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B HIS 273 CB    0.118    3.642
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 217 CB    0.113    3.647
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 289 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D ARG 321 CG    0.112    3.188
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 C    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 217 CB    0.111    3.379
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CE1   0.106    3.534
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 176 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 217 CD2   0.089    3.551
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CB    0.083    3.557
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 CD2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B THR 230 CA    0.076    3.564
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A THR 230 CA   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B HIS 273 CD2   0.076    3.564
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 291 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D ARG 325 CD    0.065    3.235
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 274 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 217 CB    0.064    3.456
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 231 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B HIS 273 CE1   0.061    3.339
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CE2   0.057    3.463
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 CA    0.056    3.704
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 217 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B GLY 277 CA    0.050    3.590
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 ND1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CE2   0.029    3.371
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 183 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D ALA 326 CB    0.024    3.466
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 NE2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B THR 230 CA    0.021    3.499
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 227 OH   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B ARG 219 CD    0.009    3.331
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 O     0.009    3.291
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CZ    0.008    3.632
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 291 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D THR 322 CA    0.008    3.292
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 219 NH2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B VAL 221 CG1   0.008    3.512
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 O     0.005    3.295
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 291 CA   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D ARG 321 CB    -0.001    3.761
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 ND1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B THR 230 CA    -0.014    3.534
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B THR 230 C     -0.025    3.395
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 186 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D ARG 323 NH2   -0.035    3.555
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 274 CA   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 217 CA    -0.037    3.797
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 CZ   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CB    -0.042    3.682
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 NE2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B THR 230 C     -0.043    3.293
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 NE2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B ASP 231 N     -0.046    3.326
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 217 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B HIS 273 C     -0.048    3.538
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 183 OD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D ARG 323 CA    -0.056    3.356
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 217 CB    -0.066    3.366
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 227 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B ARG 219 CG    -0.067    3.707
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 217 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B SER 274 CA    -0.067    3.827
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 OG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 CA    -0.068    3.408
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CD1   -0.078    3.718
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 227 CZ   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B ARG 219 CG    -0.083    3.573
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CB    -0.085    3.725
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 227 CZ   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B ARG 219 CD    -0.088    3.578
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 227 OH   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B ARG 219 NE    -0.091    2.791
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 219 NE   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B TYR 227 CZ    -0.092    3.342
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 217 CE2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B ILE 176 CD1   -0.094    3.734
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 217 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B GLY 277 CA    -0.099    3.739
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B THR 230 CA    -0.101    3.591
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 183 OD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D THR 322 C     -0.102    3.132
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A THR 230 C    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B HIS 273 CE1   -0.102    3.472
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A THR 230 C    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B HIS 273 NE2   -0.126    3.376
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CD2   -0.133    3.653
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 CG    -0.137    3.627
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 183 OD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D THR 322 O     -0.144    2.984
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 227 CZ   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B ARG 219 NE    -0.157    3.407
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 CD2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CD1   -0.167    3.687
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 183 OD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D ALA 326 CB    -0.175    3.475
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CD2   -0.177    3.697
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A THR 230 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B HIS 273 CD2   -0.182    3.582
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 217 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B HIS 273 O     -0.182    3.482
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 217 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B SER 274 N     -0.186    3.706
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CD1   -0.187    3.557
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 289 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D ARG 321 CB    -0.192    3.492
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CG    -0.194    3.564
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 219 NE   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B TYR 227 OH    -0.207    2.907
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 221 CG1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B ARG 219 NH2   -0.208    3.728
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 183 OD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D THR 322 OG1   -0.209    2.689
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 217 CD2   -0.213    3.733
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 C    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B HIS 273 CD2   -0.222    3.592
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 CB    -0.224    3.524
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 288 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D ARG 321 CB    -0.240    3.540
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 294 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 311 CA    -0.241    4.001
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 274 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 217 CA    -0.242    4.002
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 OD1   -0.250    3.550
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 219 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B TYR 227 CD2   -0.257    3.897
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 CD2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B ILE 176 CD1   -0.259    3.899
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CE2   -0.262    3.902
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 227 CE2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B ARG 219 CG    -0.262    3.902
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 N     -0.267    3.787
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 291 CA   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D PHE 477 CZ    -0.269    3.909
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 220 NH2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 193 CG    -0.285    3.805
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 205 OD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 194 CB    -0.297    3.597
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 219 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B TYR 227 CZ    -0.298    3.788
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 217 N     -0.299    3.819
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A THR 230 CA   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B HIS 273 ND1   -0.304    3.824
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 291 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D ARG 321 CB    -0.306    3.826
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 217 CA   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B SER 274 CA    -0.308    4.068
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 293 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 311 CA    -0.308    3.608
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 201 CA   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 CB    -0.317    4.077
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 CE2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CB    -0.318    3.958
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 217 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B ILE 176 CD1   -0.321    3.811
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 274 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 217 CA    -0.322    3.842
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 277 CA   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 217 CE1   -0.322    3.962
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 289 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D ARG 321 CD    -0.334    3.634
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 221 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B VAL 221 CG2   -0.339    4.099
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 NE2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B ASP 231 CB    -0.341    3.861
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A THR 230 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B HIS 273 NE2   -0.342    3.622
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 289 CA   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D ARG 321 CG    -0.346    4.106
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 293 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D ARG 325 CD    -0.347    4.107
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 217 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B HIS 273 CB    -0.349    3.869
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B HIS 273 CD2   -0.351    3.531
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CG    -0.352    3.572
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 229 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B HIS 273 CD2   -0.362    4.002
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 176 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 217 CE2   -0.372    4.012
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B THR 230 O     -0.376    3.556
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A HIS 273 CA   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 217 CB    -0.378    4.138
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A THR 230 CA   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B HIS 273 CG    -0.379    3.869
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 227 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B ARG 219 NE    -0.381    3.781
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 294 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 311 N     -0.381    3.901
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PRO 174 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CE2   -0.383    4.023
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 176 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B PHE 229 CD2   -0.385    4.025
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 183 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/D THR 322 OG1   -0.387    3.457
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 227 CE2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B ARG 219 CD    -0.389    4.029
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 219 CD   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/B TYR 227 CE2   -0.395    4.035
    

  
127 contacts  

> select #2/A:190-210

159 atoms, 161 bonds, 21 residues, 1 model selected  

> contacts sel setAttrs true restrict cross ignoreHiddenModels true reveal
> true log true
    
    
    Allowed overlap: -0.4
    H-bond overlap reduction: 0.4
    Ignore contacts between atoms separated by 4 bonds or less
    Detect intra-residue contacts: False
    Detect intra-molecule contacts: True
    
    65 contacts
                                     atom1                                                                    atom2                                   overlap  distance
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 193 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 204 CB    0.202    3.558
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 ND2   0.170    3.350
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 204 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 193 CB    0.162    3.598
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 181 CD1   0.123    3.637
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CZ   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CB    0.120    3.520
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CB    0.108    3.532
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CD1   0.081    3.439
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 191 CD2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A THR 187 O     0.066    3.234
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 CA    0.056    3.704
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 CG1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 258 CD1   0.053    3.707
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 NE    0.047    3.353
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 214 CG    0.040    3.260
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 CD    0.013    3.627
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 245 CG2   0.012    3.628
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 214 CG    0.007    3.633
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 O     0.005    3.295
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CZ   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CA    -0.006    3.646
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CZ   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 252 CB    -0.026    3.666
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 212 CG    -0.029    3.329
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CZ   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 238 CD1   -0.044    3.684
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 OG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 CA    -0.068    3.408
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 252 OE1   -0.070    3.250
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 188 CB    -0.086    3.846
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 209 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 213 CB    -0.123    3.423
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A MET 223 SD    -0.128    3.508
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 CD    -0.129    3.769
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 CG    -0.137    3.627
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 212 CB    -0.139    3.439
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 211 CB    -0.151    3.451
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CZ   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 N     -0.158    3.558
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 218 OH    -0.166    3.506
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 260 CD1   -0.178    3.938
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 238 CD2   -0.181    3.821
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 226 CD2   -0.191    3.831
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 218 CE2   -0.211    3.851
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 211 N     -0.216    2.876
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 OD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A MET 223 SD    -0.218    3.408
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CD1   -0.220    3.740
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CE2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CA    -0.221    3.861
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 212 N     -0.222    2.882
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 CB    -0.224    3.524
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CZ   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 245 CG2   -0.234    3.874
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 226 CE1   -0.235    3.875
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 NE    -0.243    3.643
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 OD1   -0.250    3.550
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CD2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 252 CD    -0.251    3.891
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 214 CG    -0.253    3.893
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 218 CD2   -0.261    3.901
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 N     -0.267    3.787
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 209 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 213 N     -0.275    2.935
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CD1   -0.286    3.656
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 245 CG2   -0.292    3.932
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 205 OD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 194 CB    -0.297    3.597
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 226 CZ    -0.299    3.939
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 201 CA   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 CB    -0.317    4.077
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CD2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 211 N     -0.328    3.728
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 CG1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 188 CD1   -0.333    4.093
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 260 CD1   -0.333    4.093
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 CZ    -0.333    3.703
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 OD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 184 OH    -0.335    2.815
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 226 CE2   -0.337    3.977
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 181 CG1   -0.352    4.112
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 CD    -0.364    3.854
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 213 OG    -0.372    2.852
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 252 CB    -0.381    4.021
    

  
65 contacts  

> select #2/A:190-210 #2/C:190-210

318 atoms, 322 bonds, 12 pseudobonds, 42 residues, 2 models selected  

> contacts sel setAttrs true restrict both ignoreHiddenModels true reveal true
> log true
    
    
    Allowed overlap: -0.4
    H-bond overlap reduction: 0.4
    Ignore contacts between atoms separated by 4 bonds or less
    Detect intra-residue contacts: False
    Detect intra-molecule contacts: True
    
    143 contacts
                                     atom1                                                                    atom2                                   overlap  distance
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 204 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 193 CB    0.202    3.558
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 ND2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 CB    0.170    3.350
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 193 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 204 CB    0.162    3.598
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 191 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 195 CB    0.145    3.615
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 192 O     0.137    3.163
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 199 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 203 CD1   0.128    3.632
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C VAL 196 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 192 O     0.120    3.180
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 203 CG1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 199 O     0.120    3.180
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLU 209 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 O     0.117    3.183
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CG1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 O     0.115    3.185
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 CG1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 195 O     0.109    3.191
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CD1   0.105    3.655
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 209 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 205 O     0.098    3.202
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 199 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C LEU 191 CD1   0.082    3.678
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 195 OD2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 191 CD1   0.081    3.219
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 199 CG1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 195 O     0.081    3.219
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 208 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 204 O     0.066    3.234
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 CA   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CB    0.056    3.704
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 204 O     0.046    3.254
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C VAL 196 CG1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 200 ND2   0.030    3.490
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 192 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 195 OD2   0.025    3.275
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CB    0.005    3.295
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 205 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 201 O     0.004    3.296
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 195 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 191 CD1   0.001    3.759
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 O     -0.008    3.308
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 O     -0.011    3.311
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 203 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 199 O     -0.015    3.315
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C LEU 191 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 195 CB    -0.019    3.779
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 CG1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 ND2   -0.023    3.543
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 200 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 204 CB    -0.024    3.324
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 195 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C LEU 191 CB    -0.039    3.799
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 204 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 O     -0.045    3.345
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CG1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 O     -0.063    3.363
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 OG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 CA    -0.068    3.408
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 209 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 205 O     -0.127    3.427
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 195 O     -0.130    3.430
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 200 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C VAL 196 O     -0.135    3.435
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 CB    -0.137    3.627
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 CD2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 203 N     -0.137    3.537
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 O     -0.139    3.439
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 207 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 203 O     -0.148    3.448
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLU 209 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 O     -0.151    3.451
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 192 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 195 CB    -0.170    3.470
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 207 CG1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 203 O     -0.176    3.476
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CB    -0.178    3.478
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 195 OD2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C LEU 191 CD2   -0.180    3.480
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 193 O     -0.192    3.492
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 O     -0.196    3.496
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 194 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 CB    -0.196    3.496
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 O     -0.200    2.860
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 205 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 201 O     -0.200    2.860
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 204 O     -0.201    2.861
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 208 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 204 O     -0.203    2.863
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 192 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 195 CG    -0.205    3.965
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 201 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 O     -0.209    2.869
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 204 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 O     -0.217    2.877
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 N     -0.219    2.879
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 204 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 200 O     -0.223    2.883
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 O     -0.224    3.524
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CB    -0.227    3.527
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 200 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C VAL 196 O     -0.230    2.890
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 195 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 198 CB    -0.230    3.530
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 195 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 199 CD1   -0.231    3.531
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 O     -0.231    2.891
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 198 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 O     -0.232    2.892
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 199 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 CB    -0.235    3.535
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLN 198 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 194 O     -0.236    2.896
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 193 O     -0.239    2.899
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 193 O     -0.244    2.904
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 206 CD2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 207 N     -0.245    3.645
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 OD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 CB    -0.250    3.550
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 O     -0.251    3.551
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 195 O     -0.255    2.915
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 209 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 205 O     -0.257    2.917
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 192 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 195 OD2   -0.258    3.558
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 198 O     -0.258    2.918
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 210 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 206 O     -0.259    3.559
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 O     -0.261    3.291
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLN 198 O     -0.263    2.923
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLU 209 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 O     -0.265    2.925
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 192 O     -0.266    2.926
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 193 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 CB    -0.267    3.567
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 199 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 195 O     -0.267    2.927
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CB    -0.267    3.787
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 O     -0.269    2.929
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 207 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 203 O     -0.270    2.930
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 195 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLN 198 CB    -0.271    3.571
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 195 CA   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 192 O     -0.281    3.581
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 195 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 191 CB    -0.289    4.049
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 O     -0.290    2.950
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 210 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 206 O     -0.290    2.950
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLN 198 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 194 O     -0.292    3.592
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 O     -0.293    2.953
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 198 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 O     -0.293    3.593
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 203 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 199 O     -0.294    2.954
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLN 198 O     -0.295    3.595
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C VAL 196 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 193 O     -0.296    3.596
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 194 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 205 OD1   -0.297    3.597
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 191 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 195 CB    -0.297    4.057
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 CB    -0.298    3.598
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 198 O     -0.300    3.600
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 O     -0.301    3.601
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 199 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 195 O     -0.303    3.603
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 ND2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 O     -0.303    2.963
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 195 O     -0.304    3.604
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLN 198 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 194 O     -0.305    3.605
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 CA   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 193 O     -0.309    3.609
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 198 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 O     -0.315    3.615
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 201 CA   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 CB    -0.317    4.077
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CD2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 N     -0.320    3.720
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CA   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 O     -0.325    3.625
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 200 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 O     -0.325    3.625
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 193 O     -0.328    3.628
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 O     -0.328    2.988
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 206 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 O     -0.329    3.629
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 N     -0.331    3.731
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 206 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 O     -0.331    2.991
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 200 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C VAL 196 O     -0.331    3.361
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 CA   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 194 O     -0.338    3.638
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 208 CA   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 204 O     -0.338    3.638
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C LEU 191 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 195 CB    -0.342    4.102
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 200 ND2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C VAL 196 O     -0.344    3.004
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 O     -0.344    3.644
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 203 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 199 O     -0.348    3.648
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 CA   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 204 O     -0.348    3.648
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 198 CA   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 195 O     -0.349    3.649
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 CB    -0.350    3.650
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 207 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 210 CB    -0.361    3.661
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 205 CA   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 201 O     -0.364    3.664
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CB    -0.367    3.667
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 CA   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 O     -0.369    3.669
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 195 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C LEU 191 CD2   -0.369    4.129
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CA   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 O     -0.370    3.670
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C LEU 191 CD2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 195 CB    -0.370    4.130
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 201 CA   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 198 O     -0.372    3.672
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 CA   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 199 O     -0.374    3.674
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLN 198 CA   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 195 O     -0.374    3.674
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLN 198 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 CA    -0.375    3.675
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 CB    -0.378    3.678
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C VAL 196 CA   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 193 O     -0.384    3.684
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 192 N    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 191 CD1   -0.389    3.909
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 206 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLU 209 CB    -0.394    3.694
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 204 CA   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 200 O     -0.397    3.697
    

  
143 contacts  
Restriction atom specifier must not be blank  

> contacts sel setAttrs true restrict cross ignoreHiddenModels true reveal
> true log true
    
    
    Allowed overlap: -0.4
    H-bond overlap reduction: 0.4
    Ignore contacts between atoms separated by 4 bonds or less
    Detect intra-residue contacts: False
    Detect intra-molecule contacts: True
    
    112 contacts
                                     atom1                                                                    atom2                                   overlap  distance
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 210 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ARG 214 CG    0.144    3.156
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 206 CE2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 249 CB    0.143    3.497
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 181 CD1   0.123    3.637
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CZ   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CB    0.120    3.520
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 193 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 220 NH2   0.119    3.401
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CB    0.108    3.532
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 206 CD2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 249 CD1   0.089    3.431
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 203 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 181 CD1   0.085    3.675
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CD1   0.081    3.439
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 191 CD2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A THR 187 O     0.066    3.234
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLU 252 OE1   0.054    3.126
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 CG1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 258 CD1   0.053    3.707
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 206 CZ   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 249 CB    0.047    3.593
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 NE    0.047    3.353
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 210 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ARG 214 CG    0.047    3.593
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 208 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C TYR 218 OH    0.044    3.296
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 214 CG    0.040    3.260
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ARG 256 NE    0.029    3.371
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C VAL 196 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 188 CB    0.022    3.738
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 CD    0.013    3.627
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 245 CG2   0.012    3.628
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 214 CG    0.007    3.633
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 206 CE2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C VAL 245 CG2   0.001    3.639
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 199 CG1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C LEU 258 CD1   -0.002    3.762
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CZ   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CA    -0.006    3.646
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CZ   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 252 CB    -0.026    3.666
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 212 CG    -0.029    3.329
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CZ   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 238 CD1   -0.044    3.684
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 208 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLN 212 CG    -0.046    3.346
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 206 CZ   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C VAL 245 CG2   -0.047    3.687
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 210 CZ   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C LEU 238 CD1   -0.059    3.699
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 200 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C MET 223 SD    -0.067    3.447
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 252 OE1   -0.070    3.250
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 210 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ARG 214 NE    -0.071    3.471
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 188 CB    -0.086    3.846
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 200 OD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C MET 223 SD    -0.092    3.282
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ARG 256 CD    -0.101    3.741
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 207 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 226 CD2   -0.110    3.750
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 208 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLN 212 CB    -0.115    3.415
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 209 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 213 CB    -0.123    3.423
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A MET 223 SD    -0.128    3.508
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 206 CZ   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 249 CA    -0.128    3.768
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 CD    -0.129    3.769
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 212 CB    -0.139    3.439
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 CZ   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLU 252 CB    -0.144    3.784
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 210 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C LEU 238 CD2   -0.146    3.786
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 211 CB    -0.151    3.451
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 207 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 211 CB    -0.152    3.452
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 199 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C LEU 260 CD1   -0.157    3.917
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CZ   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 N     -0.158    3.558
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 218 OH    -0.166    3.506
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 203 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C LEU 260 CD1   -0.170    3.930
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 260 CD1   -0.178    3.938
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 238 CD2   -0.181    3.821
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 206 CE2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 249 CD1   -0.191    3.711
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 226 CD2   -0.191    3.831
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 207 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C TYR 218 CE2   -0.191    3.831
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLU 209 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 213 CB    -0.206    3.506
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 218 CE2   -0.211    3.851
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 207 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 211 N     -0.213    2.873
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 211 N     -0.216    2.876
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 OD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A MET 223 SD    -0.218    3.408
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CD1   -0.220    3.740
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CE2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CA    -0.221    3.861
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 212 N     -0.222    2.882
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 208 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLN 212 N     -0.222    2.882
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 210 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C VAL 245 CG2   -0.226    3.866
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CZ   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 245 CG2   -0.234    3.874
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 226 CE1   -0.235    3.875
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 NE    -0.243    3.643
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CD2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 252 CD    -0.251    3.891
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 214 CG    -0.253    3.893
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 218 CD2   -0.261    3.901
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 210 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ARG 214 CG    -0.263    3.903
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 210 CD2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 211 N     -0.273    3.673
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 203 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 181 CG1   -0.274    4.034
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 209 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 213 N     -0.275    2.935
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 206 CZ   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 249 N     -0.275    3.675
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 203 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 226 CE1   -0.275    3.915
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C VAL 196 CG1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 188 CD1   -0.278    4.038
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLU 209 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 213 N     -0.282    2.942
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 193 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 220 NH2   -0.285    3.805
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CD1   -0.286    3.656
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 210 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ARG 214 NE    -0.286    3.686
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 245 CG2   -0.292    3.932
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 200 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C TYR 184 OH    -0.298    3.368
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 226 CZ    -0.299    3.939
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 207 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C TYR 218 CD2   -0.303    3.943
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 200 OD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C TYR 184 CE1   -0.308    3.488
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ARG 256 CD    -0.312    3.952
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C VAL 196 CG1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 188 CB    -0.312    4.072
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 200 OD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C TYR 184 OH    -0.315    2.795
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 210 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 213 OG    -0.315    2.795
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ARG 256 CZ    -0.325    3.695
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CD2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 211 N     -0.328    3.728
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 CG1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 188 CD1   -0.333    4.093
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 260 CD1   -0.333    4.093
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 CZ    -0.333    3.703
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ARG 256 NE    -0.334    3.734
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 OD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 184 OH    -0.335    2.815
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 226 CE2   -0.337    3.977
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ARG 256 NH1   -0.343    3.863
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ILE 199 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C LEU 258 CD1   -0.350    4.110
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 181 CG1   -0.352    4.112
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 208 CA   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C TYR 218 OH    -0.358    3.698
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C LEU 191 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C THR 187 O     -0.363    3.663
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 CD    -0.364    3.854
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLU 252 CB    -0.364    4.004
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 213 OG    -0.372    2.852
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 252 CB    -0.381    4.021
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 210 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 213 CB    -0.392    3.692
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C PHE 202 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ARG 256 CD    -0.399    3.889
    

  
112 contacts  

> select #2/A:190-210

159 atoms, 161 bonds, 66 pseudobonds, 21 residues, 2 models selected  

> contacts sel setAttrs true restrict cross ignoreHiddenModels true reveal
> true log true
    
    
    Allowed overlap: -0.4
    H-bond overlap reduction: 0.4
    Ignore contacts between atoms separated by 4 bonds or less
    Detect intra-residue contacts: False
    Detect intra-molecule contacts: True
    
    65 contacts
                                     atom1                                                                    atom2                                   overlap  distance
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 193 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 204 CB    0.202    3.558
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 ND2   0.170    3.350
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 204 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 193 CB    0.162    3.598
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 181 CD1   0.123    3.637
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CZ   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CB    0.120    3.520
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CB    0.108    3.532
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CD1   0.081    3.439
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 191 CD2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A THR 187 O     0.066    3.234
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 CA    0.056    3.704
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 CG1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 258 CD1   0.053    3.707
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 NE    0.047    3.353
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 214 CG    0.040    3.260
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 CD    0.013    3.627
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 245 CG2   0.012    3.628
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 214 CG    0.007    3.633
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 O     0.005    3.295
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CZ   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CA    -0.006    3.646
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CZ   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 252 CB    -0.026    3.666
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 212 CG    -0.029    3.329
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CZ   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 238 CD1   -0.044    3.684
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 OG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 CA    -0.068    3.408
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 252 OE1   -0.070    3.250
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 188 CB    -0.086    3.846
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 209 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 213 CB    -0.123    3.423
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A MET 223 SD    -0.128    3.508
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 CD    -0.129    3.769
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 CG    -0.137    3.627
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 212 CB    -0.139    3.439
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 211 CB    -0.151    3.451
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CZ   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 N     -0.158    3.558
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 218 OH    -0.166    3.506
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 260 CD1   -0.178    3.938
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 238 CD2   -0.181    3.821
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 226 CD2   -0.191    3.831
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 218 CE2   -0.211    3.851
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 211 N     -0.216    2.876
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 OD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A MET 223 SD    -0.218    3.408
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CD1   -0.220    3.740
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CE2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CA    -0.221    3.861
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 212 N     -0.222    2.882
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 CB    -0.224    3.524
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CZ   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 245 CG2   -0.234    3.874
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 226 CE1   -0.235    3.875
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 NE    -0.243    3.643
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 OD1   -0.250    3.550
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CD2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 252 CD    -0.251    3.891
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 214 CG    -0.253    3.893
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 218 CD2   -0.261    3.901
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 N     -0.267    3.787
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 209 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 213 N     -0.275    2.935
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CD1   -0.286    3.656
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 245 CG2   -0.292    3.932
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 205 OD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 194 CB    -0.297    3.597
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 226 CZ    -0.299    3.939
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 201 CA   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 CB    -0.317    4.077
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CD2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 211 N     -0.328    3.728
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 CG1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 188 CD1   -0.333    4.093
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 260 CD1   -0.333    4.093
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 CZ    -0.333    3.703
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 OD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 184 OH    -0.335    2.815
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 226 CE2   -0.337    3.977
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 181 CG1   -0.352    4.112
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 CD    -0.364    3.854
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 213 OG    -0.372    2.852
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 252 CB    -0.381    4.021
    

  
65 contacts  

> hide #9 models

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> close #8

> contacts sel setAttrs true restrict cross ignoreHiddenModels true reveal
> true log true
    
    
    Allowed overlap: -0.4
    H-bond overlap reduction: 0.4
    Ignore contacts between atoms separated by 4 bonds or less
    Detect intra-residue contacts: False
    Detect intra-molecule contacts: True
    
    65 contacts
                                     atom1                                                                    atom2                                   overlap  distance
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASP 193 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 204 CB    0.202    3.558
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 ND2   0.170    3.350
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 204 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASP 193 CB    0.162    3.598
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 181 CD1   0.123    3.637
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CZ   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CB    0.120    3.520
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CB    0.108    3.532
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CD1   0.081    3.439
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 191 CD2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A THR 187 O     0.066    3.234
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 CA    0.056    3.704
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 CG1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 258 CD1   0.053    3.707
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 NE    0.047    3.353
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 214 CG    0.040    3.260
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 CD    0.013    3.627
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 245 CG2   0.012    3.628
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 214 CG    0.007    3.633
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 O     0.005    3.295
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CZ   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CA    -0.006    3.646
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CZ   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 252 CB    -0.026    3.666
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 212 CG    -0.029    3.329
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CZ   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 238 CD1   -0.044    3.684
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 OG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 CA    -0.068    3.408
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 252 OE1   -0.070    3.250
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 188 CB    -0.086    3.846
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 209 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 213 CB    -0.123    3.423
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A MET 223 SD    -0.128    3.508
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 CD    -0.129    3.769
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 CG    -0.137    3.627
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 212 CB    -0.139    3.439
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 211 CB    -0.151    3.451
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CZ   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 N     -0.158    3.558
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 218 OH    -0.166    3.506
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 199 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 260 CD1   -0.178    3.938
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 238 CD2   -0.181    3.821
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 226 CD2   -0.191    3.831
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 218 CE2   -0.211    3.851
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 211 N     -0.216    2.876
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 OD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A MET 223 SD    -0.218    3.408
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CD1   -0.220    3.740
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CE2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CA    -0.221    3.861
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 208 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLN 212 N     -0.222    2.882
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 CB    -0.224    3.524
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CZ   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 245 CG2   -0.234    3.874
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 226 CE1   -0.235    3.875
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 NE    -0.243    3.643
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 194 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ASN 205 OD1   -0.250    3.550
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CD2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 252 CD    -0.251    3.891
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 214 CG    -0.253    3.893
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 218 CD2   -0.261    3.901
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 197 CB   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C GLY 201 N     -0.267    3.787
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 209 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 213 N     -0.275    2.935
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 206 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 249 CD1   -0.286    3.656
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 245 CG2   -0.292    3.932
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 205 OD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C ALA 194 CB    -0.297    3.597
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 226 CZ    -0.299    3.939
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLY 201 CA   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/C SER 197 CB    -0.317    4.077
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 CD2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ALA 211 N     -0.328    3.728
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A VAL 196 CG1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 188 CD1   -0.333    4.093
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A LEU 260 CD1   -0.333    4.093
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 CZ    -0.333    3.703
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ASN 200 OD1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A TYR 184 OH    -0.335    2.815
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 207 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 226 CE2   -0.337    3.977
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 203 CG2  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ILE 181 CG1   -0.352    4.112
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CG   Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A ARG 256 CD    -0.364    3.854
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 210 O    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A SER 213 OG    -0.372    2.852
    Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A PHE 202 CE1  Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb #2/A GLU 252 CB    -0.381    4.021
    

  
65 contacts  

> contacts ignoreHiddenModels true makePseudobonds false

11698 contacts  

> contacts ignoreHiddenModels true

11698 contacts  

> contacts sel restrict cross ignoreHiddenModels true

65 contacts  

> hide sel atoms

> select clear

> hide #8 models

> show #8 models

> hide #8 models

> show #8 models

> hide #!2 models

> show #!2 models

> select add #2

15116 atoms, 15316 bonds, 66 pseudobonds, 1920 residues, 3 models selected  

> hide sel atoms

> show sel cartoons

> select clear

> select #2:310-end

10608 atoms, 10724 bonds, 1368 residues, 1 model selected  

> hide sel atoms

> hide sel cartoons

> hide #8 models

> show #8 models

> close #8

> select #2/A:190-210

159 atoms, 161 bonds, 21 residues, 1 model selected  

> ui tool show H-Bonds

> hbonds sel restrict cross interModel false intraMol false intraRes false
> reveal true

1 hydrogen bonds found  

> hbonds sel restrict cross intraMol false intraRes false reveal true

42 hydrogen bonds found  


===== Log before crash end =====

Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.9 (2024-12-11)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /Users/sdk/Documents/Sm_Paper/Structures_Maps/SM_HEME_KCN/Original-
> Refinement/RealSpaceRefine_61/Sm_KCN_Ref56_No-HEME-
> coot-3_real_space_refined_061.pdb

Chain information for Sm_KCN_Ref56_No-HEME-coot-3_real_space_refined_061.pdb
#1  
---  
Chain | Description  
A B C D | No description available  
  




OpenGL version: 4.1 Metal - 89.3
OpenGL renderer: Apple M4
OpenGL vendor: Apple

Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.7.1, Qt 6.7.1
Qt runtime version: 6.7.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Air
      Model Identifier: Mac16,13
      Model Number: MC6L4LL/A
      Chip: Apple M4
      Total Number of Cores: 10 (4 performance and 6 efficiency)
      Memory: 24 GB
      System Firmware Version: 11881.61.3
      OS Loader Version: 11881.61.3

Software:

    System Software Overview:

      System Version: macOS 15.2 (24C2101)
      Kernel Version: Darwin 24.2.0
      Time since boot: 18 days, 17 hours, 16 minutes

Graphics/Displays:

    Apple M4:

      Chipset Model: Apple M4
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 10
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        Color LCD:
          Display Type: Built-in Liquid Retina Display
          Resolution: 2880 x 1864 Retina
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Automatically Adjust Brightness: Yes
          Connection Type: Internal
        ASUS VN247:
          Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
          UI Looks like: 1920 x 1080 @ 60.00Hz
          Mirror: Off
          Online: Yes
          Rotation: Supported


Installed Packages:
    alabaster: 1.0.0
    anyio: 4.7.0
    appdirs: 1.4.4
    appnope: 0.1.4
    asttokens: 3.0.0
    auditwheel: 6.1.0
    babel: 2.16.0
    beautifulsoup4: 4.12.3
    blockdiag: 3.0.0
    blosc2: 3.0.0
    build: 1.2.1
    certifi: 2023.11.17
    cftime: 1.6.4.post1
    charset-normalizer: 3.4.0
    ChimeraX-AddCharge: 1.5.18
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.5
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.16.1
    ChimeraX-AlphaFold: 1.0.1
    ChimeraX-AltlocExplorer: 1.1.2
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.58.8
    ChimeraX-AtomicLibrary: 14.1.11
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 3.0.0
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.13.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.4.0
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.3
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.6
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.9
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.4
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2.6
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.4.1
    ChimeraX-Hbonds: 2.5
    ChimeraX-Help: 1.3
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.3
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-KVFinder: 1.2.1
    ChimeraX-Label: 1.1.14
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.2
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.3
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.6
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7.2
    ChimeraX-MedicalToolbar: 1.1
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14.2
    ChimeraX-MMTF: 2.2
    ChimeraX-ModelArchive: 1.0
    ChimeraX-Modeller: 1.5.18
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-MutationScores: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.14
    ChimeraX-OrthoPick: 1.0.1
    ChimeraX-PDB: 2.7.6
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.2
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.6.2
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.3.1
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.5.6
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.14
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.2.0
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-SimilarStructures: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.18.1
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.2.3
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.41
    ChimeraX-Umap: 1.0
    ChimeraX-uniprot: 2.3.1
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.4
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    contourpy: 1.3.1
    cxservices: 1.2.3
    cycler: 0.12.1
    Cython: 3.0.10
    debugpy: 1.8.9
    decorator: 5.1.1
    docutils: 0.21.2
    executing: 2.1.0
    filelock: 3.15.4
    fonttools: 4.55.3
    funcparserlib: 2.0.0a0
    glfw: 2.8.0
    grako: 3.16.5
    h11: 0.14.0
    h5py: 3.12.1
    html2text: 2024.2.26
    httpcore: 1.0.7
    httpx: 0.28.1
    idna: 3.10
    ihm: 1.3
    imagecodecs: 2024.6.1
    imagesize: 1.4.1
    ipykernel: 6.29.5
    ipython: 8.26.0
    ipywidgets: 8.1.5
    jedi: 0.19.1
    Jinja2: 3.1.4
    jupyter_client: 8.6.2
    jupyter_core: 5.7.2
    jupyterlab_widgets: 3.0.13
    kiwisolver: 1.4.7
    line_profiler: 4.1.3
    lxml: 5.2.2
    lz4: 4.3.3
    MarkupSafe: 3.0.2
    matplotlib: 3.9.2
    matplotlib-inline: 0.1.7
    msgpack: 1.0.8
    ndindex: 1.9.2
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.2
    numpy: 1.26.4
    openvr: 1.26.701
    packaging: 23.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pexpect: 4.9.0
    pillow: 10.4.0
    pip: 24.2
    pkginfo: 1.11.1
    platformdirs: 4.3.6
    prompt_toolkit: 3.0.48
    psutil: 6.0.0
    ptyprocess: 0.7.0
    pure_eval: 0.2.3
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pyelftools: 0.31
    Pygments: 2.18.0
    pynmrstar: 3.3.4
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.3401
    pyparsing: 3.2.0
    pyproject_hooks: 1.2.0
    PyQt6-commercial: 6.7.1
    PyQt6-Qt6: 6.7.3
    PyQt6-WebEngine-commercial: 6.7.0
    PyQt6-WebEngine-Qt6: 6.7.3
    PyQt6-WebEngineSubwheel-Qt6: 6.7.3
    PyQt6_sip: 13.8.0
    python-dateutil: 2.9.0.post0
    pytz: 2024.2
    pyzmq: 26.2.0
    qtconsole: 5.5.2
    QtPy: 2.4.2
    qtshim: 1.0
    RandomWords: 0.4.0
    requests: 2.32.3
    scipy: 1.14.0
    setuptools: 72.1.0
    sfftk-rw: 0.8.1
    six: 1.16.0
    sniffio: 1.3.1
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.6
    Sphinx: 8.0.2
    sphinx-autodoc-typehints: 2.2.3
    sphinxcontrib-applehelp: 2.0.0
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 2.0.0
    sphinxcontrib-htmlhelp: 2.1.0
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 2.0.0
    sphinxcontrib-serializinghtml: 2.0.0
    stack-data: 0.6.3
    superqt: 0.6.3
    tables: 3.10.1
    tcia_utils: 1.5.1
    tifffile: 2024.7.24
    tinyarray: 1.2.4
    tornado: 6.4.2
    traitlets: 5.14.3
    typing_extensions: 4.12.2
    tzdata: 2024.2
    urllib3: 2.2.3
    wcwidth: 0.2.13
    webcolors: 24.6.0
    wheel: 0.43.0
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.13
}}}
"	defect	new	normal		Unassigned