id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 17476 Molecular Dynamics Viewer: list index out of range yossef.delossantos@… Eric Pettersen "{{{ The following bug report has been submitted: Platform: Windows-10-10.0.26100 ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC) Description I am trying to load the PDB files for Molecular dynamic viewer butit does not charge anything.(Describe the actions that caused this problem to occur here) Log: Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.8 (2024-06-10) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""D:\\\MEGA > sincronizacion\\\MEGAsync\\\Trabajo\\\KAUST\\\2025\\\Articulos\\\Fucosyltransferase > inhibitors G1\\\Figures\\\Nueva Figura 3\\\Competencia 3\\\Compt3 92500 > ps.pdb"" Summary of feedback from opening D:\\\MEGA sincronizacion\\\MEGAsync\\\Trabajo\\\KAUST\\\2025\\\Articulos\\\Fucosyltransferase inhibitors G1\\\Figures\\\Nueva Figura 3\\\Competencia 3\\\Compt3 92500 ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Chain information for Compt3 92500 ps.pdb #1 --- Chain | Description > | No description available > style ball Changed 5376 atom styles > set bgColor white > mlp Map values for surface ""Compt3 92500 ps.pdb_> SES surface"": minimum -29.14, mean -3.663, maximum 23.47 To also show corresponding color key, enter the above mlp command and add key true > open ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 6500 ps.pdb"" Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 6500 ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Chain information for Compt3 6500 ps.pdb #2 --- Chain | Description > | No description available > style ball Changed 10752 atom styles > hide #!1 models > hide #1.1 models > show #!1 models > open ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 11250 ps.pdb"" Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 11250 ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Chain information for Compt3 11250 ps.pdb #3 --- Chain | Description > | No description available > style ball Changed 16128 atom styles > hide #3 models > hide #2 models > hide #!1 models > close session > open ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 6500 ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 9250 ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 11250 ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 13500ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 18000ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 21750ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 26000ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 33250ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 38000ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 42000ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 50250ps.pdb"" Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 6500 ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 9250 ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 11250 ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 13500ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 18000ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 21750ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 26000ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 33250ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 38000ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 42000ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 50250ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Chain information for Compt3 6500 ps.pdb #1 --- Chain | Description > | No description available Chain information for Compt3 9250 ps.pdb #2 --- Chain | Description > | No description available Chain information for Compt3 11250 ps.pdb #3 --- Chain | Description > | No description available Chain information for Compt3 13500ps.pdb #4 --- Chain | Description > | No description available Chain information for Compt3 18000ps.pdb #5 --- Chain | Description > | No description available Chain information for Compt3 21750ps.pdb #6 --- Chain | Description > | No description available Chain information for Compt3 26000ps.pdb #7 --- Chain | Description > | No description available Chain information for Compt3 33250ps.pdb #8 --- Chain | Description > | No description available Chain information for Compt3 38000ps.pdb #9 --- Chain | Description > | No description available Chain information for Compt3 42000ps.pdb #10 --- Chain | Description > | No description available Chain information for Compt3 50250ps.pdb #11 --- Chain | Description > | No description available > hide #2 models > hide #3 models > hide #4 models > hide #6 models > hide #5 models > hide #7 models > hide #8 models > hide #9 models > hide #10 models > hide #11 models > show #2 models > hide #1 models > show #3 models > hide #2 models > hide #3 models > show #2 models > show #1 models > show #3 models > show #4 models > show #5 models > show #6 models > show #7 models > show #8 models > show #9 models > show #10 models > show #11 models > mlp Map values for surface ""Compt3 9250 ps.pdb_> SES surface"": minimum -29.14, mean -3.663, maximum 23.47 Map values for surface ""Compt3 26000ps.pdb_> SES surface"": minimum -27.21, mean -3.559, maximum 23.64 Map values for surface ""Compt3 18000ps.pdb_> SES surface"": minimum -25.7, mean -3.503, maximum 23.89 Map values for surface ""Compt3 21750ps.pdb_> SES surface"": minimum -26.13, mean -3.246, maximum 24.3 Map values for surface ""Compt3 6500 ps.pdb_> SES surface"": minimum -26.83, mean -3.529, maximum 23.82 Map values for surface ""Compt3 11250 ps.pdb_> SES surface"": minimum -24.87, mean -3.681, maximum 23.98 Map values for surface ""Compt3 13500ps.pdb_> SES surface"": minimum -25.53, mean -3.509, maximum 27.02 Map values for surface ""Compt3 42000ps.pdb_> SES surface"": minimum -28.87, mean -3.334, maximum 24.11 Map values for surface ""Compt3 50250ps.pdb_> SES surface"": minimum -25.65, mean -3.395, maximum 26.77 Map values for surface ""Compt3 33250ps.pdb_> SES surface"": minimum -27.07, mean -3.482, maximum 23.39 Map values for surface ""Compt3 38000ps.pdb_> SES surface"": minimum -27.04, mean -3.151, maximum 24.63 To also show corresponding color key, enter the above mlp command and add key true > hide #!2 models > hide #!3 models > hide #!4 models > hide #!5 models > hide #!6 models > hide #!7 models > hide #!8 models > hide #!9 models > hide #!10 models > hide #!11 models > show #!2 models > hide #!1 models > show #!3 models > hide #!2 models > show #!4 models > hide #!3 models > show #!5 models > hide #!4 models > show #!6 models > hide #!5 models > show #!7 models > hide #!6 models > show #!8 models > hide #!7 models > show #!9 models > hide #!8 models > hide #!9 models > show #!10 models > hide #!10 models > show #!11 models > open ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 53500ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 61000ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 66000ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 76500ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 85250ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 93750ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 104250ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 115000ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 136000ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 145500ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 153250ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 155750ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 160500ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 170250ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 176750ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 180500ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 189250ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 198500ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 206000ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 208750ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 211750ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 215000ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 221500ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 232000ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 247000ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 260500ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 280250ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 291750ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 307250ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 315250ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 329750ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 338750ps.pdb"" > ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 346750ps.pdb"" Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 53500ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 61000ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 66000ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 76500ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 85250ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 93750ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 104250ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 115000ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 136000ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 145500ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 153250ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 155750ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 160500ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 170250ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 176750ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 180500ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 189250ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 198500ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 206000ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 208750ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 211750ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 215000ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 221500ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 232000ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 247000ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 260500ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 280250ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 291750ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 307250ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 315250ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 329750ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 338750ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Summary of feedback from opening D:/MEGA sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Compt3 346750ps.pdb --- warnings | Ignored bad PDB record found on line 1 REMARK YASARA ************************************************************* Ignored bad PDB record found on line 2 REMARK YASARA * * Ignored bad PDB record found on line 3 REMARK YASARA * Y A S A R A * Ignored bad PDB record found on line 4 REMARK YASARA * * Ignored bad PDB record found on line 5 REMARK YASARA * Yet Another Scientific Artificial Reality Application * 14 messages similar to the above omitted Chain information for Compt3 53500ps.pdb #12 --- Chain | Description > | No description available Chain information for Compt3 61000ps.pdb #13 --- Chain | Description > | No description available Chain information for Compt3 66000ps.pdb #14 --- Chain | Description > | No description available Chain information for Compt3 76500ps.pdb #15 --- Chain | Description > | No description available Chain information for Compt3 85250ps.pdb #16 --- Chain | Description > | No description available Chain information for Compt3 93750ps.pdb #17 --- Chain | Description > | No description available Chain information for Compt3 104250ps.pdb #18 --- Chain | Description > | No description available Chain information for Compt3 115000ps.pdb #19 --- Chain | Description > | No description available Chain information for Compt3 136000ps.pdb #20 --- Chain | Description > | No description available Chain information for Compt3 145500ps.pdb #21 --- Chain | Description > | No description available Chain information for Compt3 153250ps.pdb #22 --- Chain | Description > | No description available Chain information for Compt3 155750ps.pdb #23 --- Chain | Description > | No description available Chain information for Compt3 160500ps.pdb #24 --- Chain | Description > | No description available Chain information for Compt3 170250ps.pdb #25 --- Chain | Description > | No description available Chain information for Compt3 176750ps.pdb #26 --- Chain | Description > | No description available Chain information for Compt3 180500ps.pdb #27 --- Chain | Description > | No description available Chain information for Compt3 189250ps.pdb #28 --- Chain | Description > | No description available Chain information for Compt3 198500ps.pdb #29 --- Chain | Description > | No description available Chain information for Compt3 206000ps.pdb #30 --- Chain | Description > | No description available Chain information for Compt3 208750ps.pdb #31 --- Chain | Description > | No description available Chain information for Compt3 211750ps.pdb #32 --- Chain | Description > | No description available Chain information for Compt3 215000ps.pdb #33 --- Chain | Description > | No description available Chain information for Compt3 221500ps.pdb #34 --- Chain | Description > | No description available Chain information for Compt3 232000ps.pdb #35 --- Chain | Description > | No description available Chain information for Compt3 247000ps.pdb #36 --- Chain | Description > | No description available Chain information for Compt3 260500ps.pdb #37 --- Chain | Description > | No description available Chain information for Compt3 280250ps.pdb #38 --- Chain | Description > | No description available Chain information for Compt3 291750ps.pdb #39 --- Chain | Description > | No description available Chain information for Compt3 307250ps.pdb #40 --- Chain | Description > | No description available Chain information for Compt3 315250ps.pdb #41 --- Chain | Description > | No description available Chain information for Compt3 329750ps.pdb #42 --- Chain | Description > | No description available Chain information for Compt3 338750ps.pdb #43 --- Chain | Description > | No description available Chain information for Compt3 346750ps.pdb #44 --- Chain | Description > | No description available > ui tool show Matchmaker > matchmaker #12-44#!2-11 to #1 Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 53500ps.pdb, chain > (#12), sequence alignment score = 1493.8 RMSD between 148 pruned atom pairs is 1.365 angstroms; (across all 299 pairs: 2.449) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 61000ps.pdb, chain > (#13), sequence alignment score = 1509.4 RMSD between 135 pruned atom pairs is 1.191 angstroms; (across all 299 pairs: 2.923) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 66000ps.pdb, chain > (#14), sequence alignment score = 1517.8 RMSD between 163 pruned atom pairs is 1.132 angstroms; (across all 299 pairs: 2.345) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 76500ps.pdb, chain > (#15), sequence alignment score = 1504.6 RMSD between 145 pruned atom pairs is 0.978 angstroms; (across all 299 pairs: 3.390) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 85250ps.pdb, chain > (#16), sequence alignment score = 1526.8 RMSD between 133 pruned atom pairs is 0.963 angstroms; (across all 299 pairs: 3.960) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 93750ps.pdb, chain > (#17), sequence alignment score = 1495.6 RMSD between 119 pruned atom pairs is 0.933 angstroms; (across all 299 pairs: 5.317) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 104250ps.pdb, chain > (#18), sequence alignment score = 1501.6 RMSD between 145 pruned atom pairs is 0.994 angstroms; (across all 299 pairs: 2.914) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 115000ps.pdb, chain > (#19), sequence alignment score = 1506.4 RMSD between 134 pruned atom pairs is 0.875 angstroms; (across all 299 pairs: 2.881) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 136000ps.pdb, chain > (#20), sequence alignment score = 1505.8 RMSD between 182 pruned atom pairs is 1.189 angstroms; (across all 299 pairs: 2.293) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 145500ps.pdb, chain > (#21), sequence alignment score = 1520.2 RMSD between 197 pruned atom pairs is 1.349 angstroms; (across all 299 pairs: 2.267) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 153250ps.pdb, chain > (#22), sequence alignment score = 1502.2 RMSD between 154 pruned atom pairs is 1.102 angstroms; (across all 299 pairs: 2.615) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 155750ps.pdb, chain > (#23), sequence alignment score = 1525 RMSD between 191 pruned atom pairs is 1.338 angstroms; (across all 299 pairs: 2.172) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 160500ps.pdb, chain > (#24), sequence alignment score = 1538.2 RMSD between 213 pruned atom pairs is 1.297 angstroms; (across all 299 pairs: 1.843) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 170250ps.pdb, chain > (#25), sequence alignment score = 1513.6 RMSD between 194 pruned atom pairs is 1.340 angstroms; (across all 299 pairs: 2.275) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 176750ps.pdb, chain > (#26), sequence alignment score = 1524.4 RMSD between 256 pruned atom pairs is 1.148 angstroms; (across all 299 pairs: 1.517) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 180500ps.pdb, chain > (#27), sequence alignment score = 1491.4 RMSD between 253 pruned atom pairs is 1.159 angstroms; (across all 299 pairs: 1.659) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 189250ps.pdb, chain > (#28), sequence alignment score = 1501 RMSD between 137 pruned atom pairs is 1.125 angstroms; (across all 299 pairs: 2.603) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 198500ps.pdb, chain > (#29), sequence alignment score = 1534.6 RMSD between 167 pruned atom pairs is 1.097 angstroms; (across all 299 pairs: 2.437) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 206000ps.pdb, chain > (#30), sequence alignment score = 1478.2 RMSD between 132 pruned atom pairs is 0.888 angstroms; (across all 299 pairs: 4.449) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 208750ps.pdb, chain > (#31), sequence alignment score = 1551.4 RMSD between 167 pruned atom pairs is 1.078 angstroms; (across all 299 pairs: 2.656) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 211750ps.pdb, chain > (#32), sequence alignment score = 1525.6 RMSD between 163 pruned atom pairs is 1.053 angstroms; (across all 299 pairs: 3.473) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 215000ps.pdb, chain > (#33), sequence alignment score = 1517.8 RMSD between 153 pruned atom pairs is 0.921 angstroms; (across all 299 pairs: 3.073) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 221500ps.pdb, chain > (#34), sequence alignment score = 1494.4 RMSD between 188 pruned atom pairs is 1.135 angstroms; (across all 299 pairs: 2.303) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 232000ps.pdb, chain > (#35), sequence alignment score = 1525.6 RMSD between 235 pruned atom pairs is 1.303 angstroms; (across all 299 pairs: 1.769) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 247000ps.pdb, chain > (#36), sequence alignment score = 1507.6 RMSD between 202 pruned atom pairs is 1.355 angstroms; (across all 299 pairs: 2.106) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 260500ps.pdb, chain > (#37), sequence alignment score = 1522 RMSD between 141 pruned atom pairs is 1.062 angstroms; (across all 299 pairs: 3.153) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 280250ps.pdb, chain > (#38), sequence alignment score = 1473.4 RMSD between 217 pruned atom pairs is 1.269 angstroms; (across all 299 pairs: 1.990) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 291750ps.pdb, chain > (#39), sequence alignment score = 1493.8 RMSD between 228 pruned atom pairs is 1.248 angstroms; (across all 299 pairs: 1.916) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 307250ps.pdb, chain > (#40), sequence alignment score = 1518.4 RMSD between 191 pruned atom pairs is 1.345 angstroms; (across all 299 pairs: 2.138) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 315250ps.pdb, chain > (#41), sequence alignment score = 1474.6 RMSD between 155 pruned atom pairs is 1.096 angstroms; (across all 299 pairs: 3.673) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 329750ps.pdb, chain > (#42), sequence alignment score = 1522 RMSD between 131 pruned atom pairs is 1.035 angstroms; (across all 299 pairs: 3.347) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 338750ps.pdb, chain > (#43), sequence alignment score = 1480.6 RMSD between 199 pruned atom pairs is 1.256 angstroms; (across all 299 pairs: 2.253) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 346750ps.pdb, chain > (#44), sequence alignment score = 1485.4 RMSD between 166 pruned atom pairs is 1.046 angstroms; (across all 299 pairs: 3.012) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 9250 ps.pdb, chain > (#2), sequence alignment score = 1516.6 RMSD between 208 pruned atom pairs is 1.281 angstroms; (across all 299 pairs: 1.864) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 11250 ps.pdb, chain > (#3), sequence alignment score = 1466.8 RMSD between 157 pruned atom pairs is 1.031 angstroms; (across all 299 pairs: 2.803) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 13500ps.pdb, chain > (#4), sequence alignment score = 1474 RMSD between 219 pruned atom pairs is 1.152 angstroms; (across all 299 pairs: 1.707) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 18000ps.pdb, chain > (#5), sequence alignment score = 1511.8 RMSD between 232 pruned atom pairs is 1.182 angstroms; (across all 299 pairs: 1.723) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 21750ps.pdb, chain > (#6), sequence alignment score = 1519.6 RMSD between 169 pruned atom pairs is 1.068 angstroms; (across all 299 pairs: 2.663) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 26000ps.pdb, chain > (#7), sequence alignment score = 1490.8 RMSD between 213 pruned atom pairs is 1.169 angstroms; (across all 299 pairs: 1.937) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 33250ps.pdb, chain > (#8), sequence alignment score = 1517.2 RMSD between 201 pruned atom pairs is 1.224 angstroms; (across all 299 pairs: 2.167) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 38000ps.pdb, chain > (#9), sequence alignment score = 1502.2 RMSD between 153 pruned atom pairs is 1.070 angstroms; (across all 299 pairs: 3.676) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 42000ps.pdb, chain > (#10), sequence alignment score = 1491.4 RMSD between 161 pruned atom pairs is 1.105 angstroms; (across all 299 pairs: 3.361) Matchmaker Compt3 6500 ps.pdb, chain > (#1) with Compt3 50250ps.pdb, chain > (#11), sequence alignment score = 1520.8 RMSD between 175 pruned atom pairs is 1.157 angstroms; (across all 299 pairs: 2.260) > show #!1 models > show #!2 models > show #!3 models > show #!4 models > show #!5 models > show #!6 models > show #!7 models > show #!8 models > show #!9 models > show #!10 models > mlp Map values for surface ""Compt3 9250 ps.pdb_> SES surface"": minimum -29.21, mean -3.666, maximum 23.32 Map values for surface ""Compt3 26000ps.pdb_> SES surface"": minimum -26.71, mean -3.558, maximum 23.68 Map values for surface ""Compt3 18000ps.pdb_> SES surface"": minimum -26.44, mean -3.506, maximum 23.86 Map values for surface ""Compt3 21750ps.pdb_> SES surface"": minimum -26.13, mean -3.246, maximum 23.99 Map values for surface ""Compt3 6500 ps.pdb_> SES surface"": minimum -26.83, mean -3.529, maximum 23.82 Map values for surface ""Compt3 11250 ps.pdb_> SES surface"": minimum -24.73, mean -3.677, maximum 23.86 Map values for surface ""Compt3 13500ps.pdb_> SES surface"": minimum -25.71, mean -3.506, maximum 26.41 Map values for surface ""Compt3 42000ps.pdb_> SES surface"": minimum -29.38, mean -3.338, maximum 24.27 Map values for surface ""Compt3 50250ps.pdb_> SES surface"": minimum -26.2, mean -3.393, maximum 26.91 Map values for surface ""Compt3 33250ps.pdb_> SES surface"": minimum -27.33, mean -3.48, maximum 23.85 Map values for surface ""Compt3 38000ps.pdb_> SES surface"": minimum -27.11, mean -3.152, maximum 25.14 Map values for surface ""Compt3 153250ps.pdb_> SES surface"": minimum -26.78, mean -3.311, maximum 25.86 Map values for surface ""Compt3 76500ps.pdb_> SES surface"": minimum -26.47, mean -3.379, maximum 23.8 Map values for surface ""Compt3 61000ps.pdb_> SES surface"": minimum -26.73, mean -3.527, maximum 23.84 Map values for surface ""Compt3 66000ps.pdb_> SES surface"": minimum -25.35, mean -3.484, maximum 23.4 Map values for surface ""Compt3 85250ps.pdb_> SES surface"": minimum -24.8, mean -3.341, maximum 22.75 Map values for surface ""Compt3 93750ps.pdb_> SES surface"": minimum -28.86, mean -3.533, maximum 23.17 Map values for surface ""Compt3 136000ps.pdb_> SES surface"": minimum -25.38, mean -3.543, maximum 25.13 Map values for surface ""Compt3 53500ps.pdb_> SES surface"": minimum -27.02, mean -3.423, maximum 25.02 Map values for surface ""Compt3 104250ps.pdb_> SES surface"": minimum -28.91, mean -3.485, maximum 25.76 Map values for surface ""Compt3 115000ps.pdb_> SES surface"": minimum -28.15, mean -3.344, maximum 24.43 Map values for surface ""Compt3 145500ps.pdb_> SES surface"": minimum -25.03, mean -3.35, maximum 22.89 Map values for surface ""Compt3 189250ps.pdb_> SES surface"": minimum -25.78, mean -3.262, maximum 24 Map values for surface ""Compt3 198500ps.pdb_> SES surface"": minimum -25.59, mean -3.512, maximum 24.5 Map values for surface ""Compt3 206000ps.pdb_> SES surface"": minimum -26.21, mean -3.334, maximum 23.85 Map values for surface ""Compt3 208750ps.pdb_> SES surface"": minimum -27.4, mean -3.497, maximum 24.11 Map values for surface ""Compt3 155750ps.pdb_> SES surface"": minimum -26.09, mean -3.197, maximum 25.42 Map values for surface ""Compt3 160500ps.pdb_> SES surface"": minimum -25.45, mean -3.103, maximum 23.37 Map values for surface ""Compt3 170250ps.pdb_> SES surface"": minimum -25.83, mean -3.1, maximum 25.56 Map values for surface ""Compt3 176750ps.pdb_> SES surface"": minimum -25.6, mean -3.209, maximum 22.67 Map values for surface ""Compt3 180500ps.pdb_> SES surface"": minimum -26.02, mean -2.985, maximum 24.88 Map values for surface ""Compt3 338750ps.pdb_> SES surface"": minimum -26.01, mean -3.37, maximum 23.93 Map values for surface ""Compt3 315250ps.pdb_> SES surface"": minimum -27.2, mean -3.341, maximum 23.71 Map values for surface ""Compt3 291750ps.pdb_> SES surface"": minimum -25.14, mean -3.359, maximum 23.12 Map values for surface ""Compt3 280250ps.pdb_> SES surface"": minimum -26.44, mean -3.304, maximum 26.85 Map values for surface ""Compt3 307250ps.pdb_> SES surface"": minimum -26.18, mean -3.378, maximum 24.75 Map values for surface ""Compt3 329750ps.pdb_> SES surface"": minimum -25.68, mean -3.355, maximum 25.43 Map values for surface ""Compt3 211750ps.pdb_> SES surface"": minimum -25.96, mean -3.384, maximum 24.2 Map values for surface ""Compt3 247000ps.pdb_> SES surface"": minimum -26.1, mean -3.4, maximum 26.24 Map values for surface ""Compt3 221500ps.pdb_> SES surface"": minimum -25.39, mean -3.406, maximum 25.58 Map values for surface ""Compt3 215000ps.pdb_> SES surface"": minimum -24.78, mean -3.486, maximum 24.04 Map values for surface ""Compt3 232000ps.pdb_> SES surface"": minimum -26.01, mean -3.243, maximum 25.64 Map values for surface ""Compt3 260500ps.pdb_> SES surface"": minimum -24.32, mean -3.147, maximum 23.12 Map values for surface ""Compt3 346750ps.pdb_> SES surface"": minimum -26.63, mean -2.981, maximum 24.94 To also show corresponding color key, enter the above mlp command and add key true > hide #!44 models > hide #!43 models > hide #!42 models > hide #!41 models > hide #!40 models > hide #!38 models > hide #!37 models > hide #!36 models > hide #!35 models > hide #!34 models > hide #!33 models > hide #!39 models > hide #!32 models > hide #!31 models > hide #!30 models > hide #!29 models > hide #!28 models > hide #!27 models > hide #!26 models > hide #!25 models > hide #!24 models > hide #!23 models > hide #!22 models > hide #!20 models > hide #!19 models > hide #!18 models > hide #!17 models > hide #!15 models > hide #!14 models > hide #!13 models > hide #!12 models > hide #!11 models > hide #!10 models > hide #!9 models > hide #!8 models > hide #!7 models > hide #!6 models > hide #!5 models > hide #!4 models > hide #!3 models > hide #!2 models > hide #!16 models > hide #!21 models > save ""D:/MEGA > sincronizacion/MEGAsync/Trabajo/KAUST/2025/Articulos/Fucosyltransferase > inhibitors G1/Figures/Nueva Figura 3/Competencia 3/Competencia 3.cxs"" > show #!16 models > hide #!16 models > hide #!1 models > show #!16 models > hide #!16 models > show #!17 models > show #!18 models > hide #!17 models > hide #!18 models > show #!19 models > show #!20 models > hide #!19 models > show #!38 models > hide #!20 models > hide #!38 models > show #!39 models > show #!44 models > hide #!39 models > select clear > select #1//chain_id='>' 4884 atoms, 4978 bonds, 299 residues, 1 model selected > show #!1 models > hide #!44 models > select #44//chain_id='>' 4884 atoms, 4978 bonds, 299 residues, 1 model selected > select add #44 5376 atoms, 5494 bonds, 311 residues, 2 models selected > select subtract #44 1 model selected > select clear > select ligand 21648 atoms, 22704 bonds, 528 residues, 44 models selected > show #!44 models > hide #!1 models > select clear > graphics silhouettes true > toolshed show Downloading bundle MolecularDynamicsViewer-1.6-py3-none-any.whl Installed MolecularDynamicsViewer (1.6) QWebEngineUrlScheme::registerScheme: Too late to register scheme ""kmd"" > ui tool show ViewDockX No suitable models found for ViewDockX > ui tool show ""Molecular Dynamics Viewer"" Please register the custom scheme 'kmd' via QWebEngineUrlScheme::registerScheme() before installing the custom scheme handler. > save ""C:/Users/yosse/OneDrive/Desktop/MD/MD competition FUT6 3(620) vs FUT9 > ligands/3 menos moleculas/Competencia 3 2x.cxs"" > close session > ui tool show ""Molecular Dynamics Viewer"" Please register the custom scheme 'kmd' via QWebEngineUrlScheme::registerScheme() before installing the custom scheme handler. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.8\bin\Lib\site- packages\chimerax\ui\widgets\htmlview.py"", line 320, in interceptRequest self._callback(info) File ""C:\Program Files\ChimeraX 1.8\bin\Lib\site- packages\chimerax\ui\widgets\htmlview.py"", line 93, in _intercept return interceptor(request_info, *args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.8\bin\Lib\site- packages\chimerax\ui\htmltool.py"", line 112, in _navigate self.session.ui.thread_safe(self.handle_scheme, url) File ""C:\Program Files\ChimeraX 1.8\bin\Lib\site-packages\chimerax\ui\gui.py"", line 423, in thread_safe func(*args, **kw) File ""C:\Users\yosse\AppData\Local\UCSF\ChimeraX\1.8\Python311\site- packages\com\kdiller\dynamics\viewer\gui.py"", line 57, in handle_scheme self.openFile() File ""C:\Users\yosse\AppData\Local\UCSF\ChimeraX\1.8\Python311\site- packages\com\kdiller\dynamics\viewer\gui.py"", line 239, in openFile self.atomStruct.atoms.coords = self.atomLocation[0] ~~~~~~~~~~~~~~~~~^^^ IndexError: list index out of range IndexError: list index out of range File ""C:\Users\yosse\AppData\Local\UCSF\ChimeraX\1.8\Python311\site- packages\com\kdiller\dynamics\viewer\gui.py"", line 239, in openFile self.atomStruct.atoms.coords = self.atomLocation[0] ~~~~~~~~~~~~~~~~~^^^ See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.8\bin\Lib\site- packages\chimerax\ui\widgets\htmlview.py"", line 320, in interceptRequest self._callback(info) File ""C:\Program Files\ChimeraX 1.8\bin\Lib\site- packages\chimerax\ui\widgets\htmlview.py"", line 93, in _intercept return interceptor(request_info, *args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.8\bin\Lib\site- packages\chimerax\ui\htmltool.py"", line 112, in _navigate self.session.ui.thread_safe(self.handle_scheme, url) File ""C:\Program Files\ChimeraX 1.8\bin\Lib\site-packages\chimerax\ui\gui.py"", line 423, in thread_safe func(*args, **kw) File ""C:\Users\yosse\AppData\Local\UCSF\ChimeraX\1.8\Python311\site- packages\com\kdiller\dynamics\viewer\gui.py"", line 57, in handle_scheme self.openFile() File ""C:\Users\yosse\AppData\Local\UCSF\ChimeraX\1.8\Python311\site- packages\com\kdiller\dynamics\viewer\gui.py"", line 239, in openFile self.atomStruct.atoms.coords = self.atomLocation[0] ~~~~~~~~~~~~~~~~~^^^ IndexError: list index out of range IndexError: list index out of range File ""C:\Users\yosse\AppData\Local\UCSF\ChimeraX\1.8\Python311\site- packages\com\kdiller\dynamics\viewer\gui.py"", line 239, in openFile self.atomStruct.atoms.coords = self.atomLocation[0] ~~~~~~~~~~~~~~~~~^^^ See log for complete Python traceback. Traceback (most recent call last): File ""C:\Program Files\ChimeraX 1.8\bin\Lib\site- packages\chimerax\ui\widgets\htmlview.py"", line 320, in interceptRequest self._callback(info) File ""C:\Program Files\ChimeraX 1.8\bin\Lib\site- packages\chimerax\ui\widgets\htmlview.py"", line 93, in _intercept return interceptor(request_info, *args) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File ""C:\Program Files\ChimeraX 1.8\bin\Lib\site- packages\chimerax\ui\htmltool.py"", line 112, in _navigate self.session.ui.thread_safe(self.handle_scheme, url) File ""C:\Program Files\ChimeraX 1.8\bin\Lib\site-packages\chimerax\ui\gui.py"", line 423, in thread_safe func(*args, **kw) File ""C:\Users\yosse\AppData\Local\UCSF\ChimeraX\1.8\Python311\site- packages\com\kdiller\dynamics\viewer\gui.py"", line 57, in handle_scheme self.openFile() File ""C:\Users\yosse\AppData\Local\UCSF\ChimeraX\1.8\Python311\site- packages\com\kdiller\dynamics\viewer\gui.py"", line 239, in openFile self.atomStruct.atoms.coords = self.atomLocation[0] ~~~~~~~~~~~~~~~~~^^^ IndexError: list index out of range IndexError: list index out of range File ""C:\Users\yosse\AppData\Local\UCSF\ChimeraX\1.8\Python311\site- packages\com\kdiller\dynamics\viewer\gui.py"", line 239, in openFile self.atomStruct.atoms.coords = self.atomLocation[0] ~~~~~~~~~~~~~~~~~^^^ See log for complete Python traceback. OpenGL version: 3.3.0 NVIDIA 551.83 OpenGL renderer: NVIDIA GeForce RTX 3060/PCIe/SSE2 OpenGL vendor: NVIDIA Corporation Python: 3.11.4 Locale: en_GB.cp1252 Qt version: PyQt6 6.6.1, Qt 6.6.1 Qt runtime version: 6.6.3 Qt platform: windows Manufacturer: Acer Model: Nitro N50-640 OS: Microsoft Windows 11 Home (Build 26100) Memory: 17,016,274,944 MaxProcessMemory: 137,438,953,344 CPU: 20 12th Gen Intel(R) Core(TM) i7-12700F OSLanguage: en-GB Installed Packages: alabaster: 0.7.16 appdirs: 1.4.4 asttokens: 2.4.1 Babel: 2.15.0 beautifulsoup4: 4.12.3 blockdiag: 3.0.0 blosc2: 2.0.0 build: 1.2.1 certifi: 2024.6.2 cftime: 1.6.4 charset-normalizer: 3.3.2 ChimeraX-AddCharge: 1.5.17 ChimeraX-AddH: 2.2.6 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.5 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.12.7 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.1.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.57.1 ChimeraX-AtomicLibrary: 14.0.6 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.4.6 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.12.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.7 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.4 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.6 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.8 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.3 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2.4 ChimeraX-DiffPlot: 1.0 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-Label: 1.1.10 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.1.6 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.3 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.7.1 ChimeraX-MedicalToolbar: 1.0.3 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.14.1 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.17 ChimeraX-ModelPanel: 1.5 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.13.5 ChimeraX-PDB: 2.7.5 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.1 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.4.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.2 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.0.15 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.11.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.16.5 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.39.1 ChimeraX-uniprot: 2.3 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.3 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.4 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 comtypes: 1.4.1 contourpy: 1.2.1 cxservices: 1.2.2 cycler: 0.12.1 Cython: 3.0.10 debugpy: 1.8.1 decorator: 5.1.1 docutils: 0.20.1 executing: 2.0.1 filelock: 3.13.4 fonttools: 4.53.0 funcparserlib: 2.0.0a0 glfw: 2.7.0 grako: 3.16.5 h5py: 3.11.0 html2text: 2024.2.26 idna: 3.7 ihm: 1.0 imagecodecs: 2024.1.1 imagesize: 1.4.1 ipykernel: 6.29.2 ipython: 8.21.0 ipywidgets: 8.1.3 jedi: 0.19.1 jinja2: 3.1.4 jupyter-client: 8.6.0 jupyter-core: 5.7.2 jupyterlab-widgets: 3.0.11 kiwisolver: 1.4.5 line-profiler: 4.1.2 lxml: 5.2.1 lz4: 4.3.3 MarkupSafe: 2.1.5 matplotlib: 3.8.4 matplotlib-inline: 0.1.7 MolecularDynamicsViewer: 1.6 msgpack: 1.0.8 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.10.0 numpy: 1.26.4 openvr: 1.26.701 packaging: 24.1 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pillow: 10.3.0 pip: 24.0 pkginfo: 1.10.0 platformdirs: 4.2.2 prompt-toolkit: 3.0.47 psutil: 5.9.8 pure-eval: 0.2.2 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 pygments: 2.17.2 pynmrstar: 3.3.4 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.3401 pyparsing: 3.1.2 pyproject-hooks: 1.1.0 PyQt6-commercial: 6.6.1 PyQt6-Qt6: 6.6.3 PyQt6-sip: 13.6.0 PyQt6-WebEngine-commercial: 6.6.0 PyQt6-WebEngine-Qt6: 6.6.3 python-dateutil: 2.9.0.post0 pytz: 2024.1 pywin32: 306 pyzmq: 26.0.3 qtconsole: 5.5.1 QtPy: 2.4.1 RandomWords: 0.4.0 requests: 2.31.0 scipy: 1.13.0 setuptools: 69.5.1 sfftk-rw: 0.8.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.5 sphinx: 7.2.6 sphinx-autodoc-typehints: 2.0.1 sphinxcontrib-applehelp: 1.0.8 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.6 sphinxcontrib-htmlhelp: 2.0.5 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.7 sphinxcontrib-serializinghtml: 1.1.10 stack-data: 0.6.3 superqt: 0.6.3 tables: 3.8.0 tcia-utils: 1.5.1 tifffile: 2024.1.30 tinyarray: 1.2.4 tornado: 6.4.1 traitlets: 5.14.2 typing-extensions: 4.12.2 tzdata: 2024.1 urllib3: 2.2.1 wcwidth: 0.2.13 webcolors: 1.13 wheel: 0.43.0 wheel-filename: 1.4.1 widgetsnbextension: 4.0.11 WMI: 1.5.1 }}} " defect closed normal Third Party limitation Kyle Diller all ChimeraX