id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
17462	Crash on Mac waking from sleep	chimerax-bug-report@…	Tom Goddard	"{{{
The following bug report has been submitted:
Platform:        macOS-15.4-x86_64-i386-64bit
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
Fatal Python error: Segmentation fault

Current thread 0x00007ff859011b40 (most recent call first):
  File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 315 in event_loop
  File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1003 in init
  File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1166 in 
  File """", line 88 in _run_code
  File """", line 198 in _run_module_as_main

Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, chimerax.surface._surface, chimerax.pdb_lib._load_libs, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, lxml._elementpath, lxml.etree, PIL._imagingmath, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, psutil._psutil_osx, psutil._psutil_posix, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.pdb._pdbio, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, chimerax.alignment_algs._sw, chimerax.dssp._dssp, chimerax.alignment_algs._nw (total: 60)


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}
===== Log before crash start =====
Startup Messages  
---  
warning | Replacing fetcher for 'pdb_nmr' and format NMRSTAR from NMRSTAR bundle with that from NMRSTAR bundle  
  
UCSF ChimeraX version: 1.7 (2023-12-19)  
© 2016-2023 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /Users/lijuanyin/project/ctmito/cu182_184/j391_39s/deposit/tRNA_2.pdb

Chain information for tRNA_2.pdb #1  
---  
Chain | Description  
Bb | No description available  
  

> open /Users/lijuanyin/project/pol3/job12/c1/job27/run_it163_class001.mrc

Opened run_it163_class001.mrc as #2, grid size 120,120,120, pixel 2.8, shown
at level 0.0597, step 1, values float32  

> open /Users/lijuanyin/project/pol3/job12/c1/job27/run_it163_class002.mrc

Opened run_it163_class002.mrc as #3, grid size 120,120,120, pixel 2.8, shown
at level 0.0575, step 1, values float32  

> open /Users/lijuanyin/project/pol3/job12/c1/job27/run_it163_class003.mrc

Opened run_it163_class003.mrc as #4, grid size 120,120,120, pixel 2.8, shown
at level 0.0584, step 1, values float32  

> open /Users/lijuanyin/project/pol3/job12/c1/job27/run_it163_class004.mrc

Opened run_it163_class004.mrc as #5, grid size 120,120,120, pixel 2.8, shown
at level 0.0612, step 1, values float32  

> open /Users/lijuanyin/project/pol3/job12/c1/job27/run_it163_class005.mrc

Opened run_it163_class005.mrc as #6, grid size 120,120,120, pixel 2.8, shown
at level 0.0592, step 1, values float32  

> open /Users/lijuanyin/project/pol3/job12/c1/job27/run_it163_class006.mrc

Opened run_it163_class006.mrc as #7, grid size 120,120,120, pixel 2.8, shown
at level 0.0615, step 1, values float32  

> volume #4 level 0.03043

> volume #3 level 0.02474

> volume #2 level 0.02528

> volume #3 level 0.02055

> volume #3 level 0.03649

> volume #3 level 0.01467

> volume #2 level 0.01877

> volume #2 level 0.03644

> volume #3 level 0.02306

> volume #4 level 0.01151

> volume #4 level 0.02503

> volume #5 level 0.02316

> volume #5 level 0.007929

> volume #5 level 0.02316

> volume #6 level 0.02129

> volume #3 level 0.01635

> volume #7 level 0.01766

> close #6

> volume #7 level 0.02233

> volume #5 level 0.0184

> open /Users/lijuanyin/Downloads/AF-Q9NVU0-F1-model_v4.pdb

AF-Q9NVU0-F1-model_v4.pdb title:  
Alphafold monomer V2.0 prediction for DNA-directed RNA polymerase III subunit
RPC5 (Q9NVU0) [more info...]  
  
Chain information for AF-Q9NVU0-F1-model_v4.pdb #6  
---  
Chain | Description | UniProt  
A | DNA-directed RNA polymerase III subunit RPC5 | RPC5_HUMAN 1-708  
  

> open /Users/lijuanyin/Downloads/8iuh.cif

8iuh.cif title:  
RNA polymerase III pre-initiation complex open complex 1 [more info...]  
  
Chain information for 8iuh.cif #8  
---  
Chain | Description | UniProt  
1 | snRNA-activating protein complex subunit 1 | SNPC1_HUMAN 1-368  
3 | snRNA-activating protein complex subunit 3 | SNPC3_HUMAN 1-411  
4 | snRNA-activating protein complex subunit 4 | SNPC4_HUMAN 1-1469  
A | DNA-directed RNA polymerase III subunit RPC1 | RPC1_HUMAN 1-1390  
B | DNA-directed RNA polymerase III subunit RPC2 | RPC2_HUMAN 1-1133  
C | DNA-directed RNA polymerases I and III subunit RPAC1 | RPAC1_HUMAN 1-346  
D | DNA-directed RNA polymerase III subunit RPC9 | RPC9_HUMAN 1-148  
E | DNA-directed RNA polymerases I, II, and III subunit RPABC1 | RPAB1_HUMAN 1-210  
F | DNA-directed RNA polymerases I, II, and III subunit RPABC2 | RPAB2_HUMAN 1-127  
G | DNA-directed RNA polymerase III subunit RPC8 | RPC8_HUMAN 1-204  
H | DNA-directed RNA polymerases I, II, and III subunit RPABC3 | RPAB3_HUMAN 1-150  
I | DNA-directed RNA polymerase III subunit RPC10 | RPC10_HUMAN 1-108  
J | DNA-directed RNA polymerases I, II, and III subunit RPABC5 | RPAB5_HUMAN 1-67  
K | DNA-directed RNA polymerases I and III subunit RPAC2 | RPAC2_HUMAN 1-133  
L | DNA-directed RNA polymerases I, II, and III subunit RPABC4 | RPAB4_HUMAN 1-58  
M | DNA-directed RNA polymerase III subunit RPC5 | RPC5_HUMAN 1-708  
N | DNA-directed RNA polymerase III subunit RPC4 | RPC4_HUMAN 1-398  
O | DNA-directed RNA polymerase III subunit RPC3 | RPC3_HUMAN 1-534  
P | DNA-directed RNA polymerase III subunit RPC6 | RPC6_HUMAN 1-316  
Q | DNA-directed RNA polymerase III subunit RPC7 | RPC7_HUMAN 1-223  
U | TATA-box-binding protein | TBP_HUMAN 1-339  
V | Transcription factor IIIB 50 kDa subunit | BRF2_HUMAN 1-419  
W | Transcription factor TFIIIB component B'' homolog | BDP1_HUMAN 1-2624  
X | DNA (81-MER) |   
Y | DNA (81-MER) |   
  
Non-standard residues in 8iuh.cif #8  
---  
MG — magnesium ion  
SF4 — iron/sulfur cluster  
ZN — zinc ion  
  

> hide #!2 models

> hide #1 models

> hide #6 models

> view

> show #!8 cartoons

> hide #!8 atoms

> select /M

3382 atoms, 3455 bonds, 1 pseudobond, 422 residues, 2 models selected  

> close

> open /Users/lijuanyin/project/pol3/job12/c2/job32/run_it141_class001.mrc

Opened run_it141_class001.mrc as #1, grid size 120,120,120, pixel 2.8, shown
at level 0.0553, step 1, values float32  

> open /Users/lijuanyin/project/pol3/job12/c2/job32/run_it141_class002.mrc

Opened run_it141_class002.mrc as #2, grid size 120,120,120, pixel 2.8, shown
at level 0.0594, step 1, values float32  

> open /Users/lijuanyin/project/pol3/job12/c2/job32/run_it141_class003.mrc

Opened run_it141_class003.mrc as #3, grid size 120,120,120, pixel 2.8, shown
at level 0.0575, step 1, values float32  

> open /Users/lijuanyin/project/pol3/job12/c2/job32/run_it141_class004.mrc

Opened run_it141_class004.mrc as #4, grid size 120,120,120, pixel 2.8, shown
at level 0.0634, step 1, values float32  

> open /Users/lijuanyin/project/pol3/job12/c2/job32/run_it141_class005.mrc

Opened run_it141_class005.mrc as #5, grid size 120,120,120, pixel 2.8, shown
at level 0.0575, step 1, values float32  

> open /Users/lijuanyin/project/pol3/job12/c2/job32/run_it141_class006.mrc

Opened run_it141_class006.mrc as #6, grid size 120,120,120, pixel 2.8, shown
at level 0.0576, step 1, values float32  

> volume #1 level 0.03013

> volume #2 level 0.02197

> volume #2 level 0.01831

> volume #1 level 0.02332

> volume #3 level 0.01585

> volume #4 level 0.02529

> volume #4 level 0.03702

> volume #4 level 0.03042

> volume #5 level 0.02552

> volume #5 level 0.02478

> volume #3 level 0.02405

> volume #6 level 0.03252

> open /Users/lijuanyin/Downloads/8iuh.cif

8iuh.cif title:  
RNA polymerase III pre-initiation complex open complex 1 [more info...]  
  
Chain information for 8iuh.cif #7  
---  
Chain | Description | UniProt  
1 | snRNA-activating protein complex subunit 1 | SNPC1_HUMAN 1-368  
3 | snRNA-activating protein complex subunit 3 | SNPC3_HUMAN 1-411  
4 | snRNA-activating protein complex subunit 4 | SNPC4_HUMAN 1-1469  
A | DNA-directed RNA polymerase III subunit RPC1 | RPC1_HUMAN 1-1390  
B | DNA-directed RNA polymerase III subunit RPC2 | RPC2_HUMAN 1-1133  
C | DNA-directed RNA polymerases I and III subunit RPAC1 | RPAC1_HUMAN 1-346  
D | DNA-directed RNA polymerase III subunit RPC9 | RPC9_HUMAN 1-148  
E | DNA-directed RNA polymerases I, II, and III subunit RPABC1 | RPAB1_HUMAN 1-210  
F | DNA-directed RNA polymerases I, II, and III subunit RPABC2 | RPAB2_HUMAN 1-127  
G | DNA-directed RNA polymerase III subunit RPC8 | RPC8_HUMAN 1-204  
H | DNA-directed RNA polymerases I, II, and III subunit RPABC3 | RPAB3_HUMAN 1-150  
I | DNA-directed RNA polymerase III subunit RPC10 | RPC10_HUMAN 1-108  
J | DNA-directed RNA polymerases I, II, and III subunit RPABC5 | RPAB5_HUMAN 1-67  
K | DNA-directed RNA polymerases I and III subunit RPAC2 | RPAC2_HUMAN 1-133  
L | DNA-directed RNA polymerases I, II, and III subunit RPABC4 | RPAB4_HUMAN 1-58  
M | DNA-directed RNA polymerase III subunit RPC5 | RPC5_HUMAN 1-708  
N | DNA-directed RNA polymerase III subunit RPC4 | RPC4_HUMAN 1-398  
O | DNA-directed RNA polymerase III subunit RPC3 | RPC3_HUMAN 1-534  
P | DNA-directed RNA polymerase III subunit RPC6 | RPC6_HUMAN 1-316  
Q | DNA-directed RNA polymerase III subunit RPC7 | RPC7_HUMAN 1-223  
U | TATA-box-binding protein | TBP_HUMAN 1-339  
V | Transcription factor IIIB 50 kDa subunit | BRF2_HUMAN 1-419  
W | Transcription factor TFIIIB component B'' homolog | BDP1_HUMAN 1-2624  
X | DNA (81-MER) |   
Y | DNA (81-MER) |   
  
Non-standard residues in 8iuh.cif #7  
---  
MG — magnesium ion  
SF4 — iron/sulfur cluster  
ZN — zinc ion  
  

> show cartoons

> hide atoms


===== Log before crash end =====

Log:
UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open /Users/lijuanyin/project/pol3/job12/c2/job32/run_it200_class001.mrc

Opened run_it200_class001.mrc as #1, grid size 120,120,120, pixel 2.8, shown
at level 0.0596, step 1, values float32  




OpenGL version: 4.1 ATI-7.0.3
OpenGL renderer: AMD Radeon Pro 5500M OpenGL Engine
OpenGL vendor: ATI Technologies Inc.

Python: 3.11.4
Locale: en_US.UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: MacBook Pro
      Model Identifier: MacBookPro16,1
      Processor Name: 8-Core Intel Core i9
      Processor Speed: 2,3 GHz
      Number of Processors: 1
      Total Number of Cores: 8
      L2 Cache (per Core): 256 KB
      L3 Cache: 16 MB
      Hyper-Threading Technology: Enabled
      Memory: 64 GB
      System Firmware Version: 2075.101.2.0.0 (iBridge: 22.16.14248.0.0,0)
      OS Loader Version: 583~900

Software:

    System Software Overview:

      System Version: macOS 15.4 (24E248)
      Kernel Version: Darwin 24.4.0
      Time since boot: 8天23小时27分钟

Graphics/Displays:

    Intel UHD Graphics 630:

      Chipset Model: Intel UHD Graphics 630
      Type: GPU
      Bus: Built-In
      VRAM (Dynamic, Max): 1536 MB
      Vendor: Intel
      Device ID: 0x3e9b
      Revision ID: 0x0002
      Automatic Graphics Switching: Supported
      gMux Version: 5.0.0
      Metal Support: Metal 3

    AMD Radeon Pro 5500M:

      Chipset Model: AMD Radeon Pro 5500M
      Type: GPU
      Bus: PCIe
      PCIe Lane Width: x16
      VRAM (Total): 8 GB
      Vendor: AMD (0x1002)
      Device ID: 0x7340
      Revision ID: 0x0040
      ROM Revision: 113-D3220E-190
      VBIOS Version: 113-D32206U1-020
      Option ROM Version: 113-D32206U1-020
      EFI Driver Version: 01.A1.190
      Automatic Graphics Switching: Supported
      gMux Version: 5.0.0
      Metal Support: Metal 3
      Displays:
        C34H89x:
          Resolution: 3440 x 1440 (UWQHD - Ultra-Wide Quad HD)
          UI Looks like: 3440 x 1440 @ 50.00Hz
          Framebuffer Depth: 30-Bit Color (ARGB2101010)
          Display Serial Number: H1AK500000  
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Rotation: Supported
          Adapter Type: DVI or HDMI
          Adapter Firmware Version: ff.c8


Installed Packages:
    alabaster: 0.7.16
    appdirs: 1.4.4
    appnope: 0.1.4
    asttokens: 2.4.1
    Babel: 2.15.0
    beautifulsoup4: 4.12.3
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 1.2.1
    certifi: 2023.11.17
    cftime: 1.6.4
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.17
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.5
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.7
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.57.1
    ChimeraX-AtomicLibrary: 14.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.4.6
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.12.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.7
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.6
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.8
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.3
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2.4
    ChimeraX-DiffPlot: 1.0
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.10
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.3
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7.1
    ChimeraX-MedicalToolbar: 1.0.3
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.17
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13.5
    ChimeraX-PDB: 2.7.5
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.1
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.4.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.0.15
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.16.5
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.39.1
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.3
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    contourpy: 1.2.1
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 3.0.10
    debugpy: 1.8.1
    decorator: 5.1.1
    docutils: 0.20.1
    executing: 2.0.1
    filelock: 3.13.4
    fonttools: 4.53.0
    funcparserlib: 2.0.0a0
    glfw: 2.7.0
    grako: 3.16.5
    h5py: 3.11.0
    html2text: 2024.2.26
    idna: 3.7
    ihm: 1.0
    imagecodecs: 2024.1.1
    imagesize: 1.4.1
    ipykernel: 6.29.2
    ipython: 8.21.0
    ipywidgets: 8.1.3
    jedi: 0.19.1
    jinja2: 3.1.4
    jupyter-client: 8.6.0
    jupyter-core: 5.7.2
    jupyterlab-widgets: 3.0.11
    kiwisolver: 1.4.5
    line-profiler: 4.1.2
    lxml: 5.2.1
    lz4: 4.3.3
    MarkupSafe: 2.1.5
    matplotlib: 3.8.4
    matplotlib-inline: 0.1.7
    msgpack: 1.0.8
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.0
    numpy: 1.26.4
    openvr: 1.26.701
    packaging: 23.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pexpect: 4.9.0
    pillow: 10.3.0
    pip: 24.0
    pkginfo: 1.10.0
    platformdirs: 4.2.2
    prompt-toolkit: 3.0.47
    psutil: 5.9.8
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pygments: 2.17.2
    pynmrstar: 3.3.4
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.3401
    pyparsing: 3.1.2
    pyproject-hooks: 1.1.0
    PyQt6-commercial: 6.6.1
    PyQt6-Qt6: 6.6.3
    PyQt6-sip: 13.6.0
    PyQt6-WebEngine-commercial: 6.6.0
    PyQt6-WebEngine-Qt6: 6.6.3
    python-dateutil: 2.9.0.post0
    pytz: 2024.1
    pyzmq: 26.0.3
    qtconsole: 5.5.1
    QtPy: 2.4.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.13.0
    setuptools: 69.5.1
    setuptools-scm: 8.0.4
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.5
    sphinx: 7.2.6
    sphinx-autodoc-typehints: 2.0.1
    sphinxcontrib-applehelp: 1.0.8
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.6
    sphinxcontrib-htmlhelp: 2.0.5
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.7
    sphinxcontrib-serializinghtml: 1.1.10
    stack-data: 0.6.3
    superqt: 0.6.3
    tables: 3.8.0
    tcia-utils: 1.5.1
    tifffile: 2024.1.30
    tinyarray: 1.2.4
    tornado: 6.4.1
    traitlets: 5.14.2
    typing-extensions: 4.12.2
    tzdata: 2024.1
    urllib3: 2.2.1
    wcwidth: 0.2.13
    webcolors: 1.13
    wheel: 0.43.0
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.11
}}}
"	defect	closed	normal		Window Toolkit		duplicate						all	ChimeraX