id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 17419 Crash on Mac waking from sleep chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-15.3.2-arm64-arm-64bit ChimeraX Version: 1.9 (2024-12-11 19:11:19 UTC) Description Last time you used ChimeraX it crashed. This is a known crash that we are unable to fix. Here is information that may help you avoid this crash. The Qt window toolkit crashed due to a display configuration change, typically when waking from sleep or when an external display is disconnected or connected. This has only been seen on Mac computers. We hope a newer version of Qt will fix it. We update ChimeraX daily builds whenever a new Qt is released. You can check here https://www.cgl.ucsf.edu/chimerax/docs/troubleshoot.html#macdisplay to see if it has been fixed in a newer ChimeraX. 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unallocated=2.4G(100%)\n\n VIRTUAL REGION \nREGION TYPE SIZE COUNT (non-coalesced) \n=========== ======= ======= \nAccelerate framework 384K 3 \nActivity Tracing 256K 1 \nCG image 960K 36 \nColorSync 640K 32 \nCoreAnimation 2800K 161 \nCoreGraphics 64K 4 \nCoreServices 624K 2 \nCoreUI image data 5344K 55 \nFoundation 48K 2 \nKernel Alloc Once 32K 1 \nMALLOC 1.8G 96 \nMALLOC guard page 288K 18 \nMach message 64K 3 \nOpenGL GLSL 384K 4 \nSTACK GUARD 592K 37 \nStack 192.3M 38 \nStack Guard 56.0M 1 \nVM_ALLOCATE 266.8M 316 \nVM_ALLOCATE (reserved) 128.0M 2 reserved VM address space (unallocated)\n__AUTH 5289K 673 \n__AUTH_CONST 70.9M 921 \n__CTF 824 1 \n__DATA 33.5M 1069 \n__DATA_CONST 34.3M 1087 \n__DATA_DIRTY 2763K 342 \n__FONT_DATA 2352 1 \n__GLSLBUILTINS 5174K 1 \n__INFO_FILTER 8 1 \n__LINKEDIT 638.3M 160 \n__OBJC_RW 2374K 1 \n__TEXT 1.3G 1107 \n__TPRO_CONST 272K 2 \ndyld private memory 32K 2 \nmapped file 620.7M 114 \nowned unmapped memory 57.3M 1 \npage table in kernel 1574K 1 \nshared memory 3200K 25 \n=========== ======= ======= \nTOTAL 5.2G 6321 \nTOTAL, minus reserved VM space 5.0G 6321 \n"", ""legacyInfo"" : { ""threadTriggered"" : { ""name"" : ""CrBrowserMain"", ""queue"" : ""com.apple.main-thread"" } }, ""logWritingSignature"" : ""107c3762a3014a2c44eb8f0ee70156b0f386d76c"", ""trialInfo"" : { ""rollouts"" : [ { ""rolloutId"" : ""6410af69ed1e1e7ab93ed169"", ""factorPackIds"" : { }, ""deploymentId"" : 240000011 }, { ""rolloutId"" : ""652eff3d1bce5442b8d753c9"", ""factorPackIds"" : { }, ""deploymentId"" : 240000009 } ], ""experiments"" : [ ] } } ===== Log before crash start ===== Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.9 (2024-12-11) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open > /Users/kimbomin/Library/CloudStorage/Dropbox/share_dir/jieun_bomin/CB1_project/Chimera_Session/CB1_7FEE_5TGZ_keyresidues.cxs > format session opened ChimeraX session > select : 170 44 atoms, 44 bonds, 4 residues, 4 models selected > show (#!1-2 & sel) target ab > label (#!1-2 & sel) text ""{0.label_one_letter_code} > {0.number}{0.insertion_code}"" > show #3 models > show #!4 models > show sel target ab > label sel text ""{0.label_one_letter_code} {0.number}{0.insertion_code}"" > select : 356 50 atoms, 52 bonds, 4 residues, 4 models selected > show sel target ab > hide #!4 models > hide #!3 models > hide #!2 models > select add #2 3578 atoms, 3648 bonds, 458 residues, 5 models selected > select add #3 7507 atoms, 7584 bonds, 1011 residues, 6 models selected > select add #4 10909 atoms, 11067 bonds, 1446 residues, 7 models selected > select subtract #4 7499 atoms, 7577 bonds, 1010 residues, 5 models selected > select subtract #3 3556 atoms, 3626 bonds, 456 residues, 3 models selected > select subtract #2 14 atoms, 15 bonds, 1 residue, 1 model selected > select add #1 4060 atoms, 4126 bonds, 520 residues, 2 models selected > show #!4 models > select add #4 7470 atoms, 7616 bonds, 956 residues, 4 models selected > hide #!1 models > select subtract #1 3410 atoms, 3490 bonds, 436 residues, 2 models selected > color (#!4 & sel) #ffa4aeff > hide #!4 models > select subtract #4 Nothing selected > show #!3 models > show #!2 models > hide #!3 models > select add #2 3542 atoms, 3611 bonds, 455 residues, 2 models selected > color (#!2 & sel) #abc5eeff > color (#!2 & sel) #95a7f2ff > color (#!2 & sel) #7177f2ff > show #!3 models > select add #3 7485 atoms, 7562 bonds, 1009 residues, 4 models selected > select subtract #2 3943 atoms, 3951 bonds, 554 residues, 2 models selected > hide #!2 models > color (#!3 & sel) cornflower blue > color sel byhetero > show #!2 models > select add #2 7485 atoms, 7562 bonds, 1009 residues, 4 models selected > hide #!3 models > select subtract #3 3542 atoms, 3611 bonds, 455 residues, 2 models selected > color sel byhetero > transparency 80 cartoons > show #!1 models > select add #1 7602 atoms, 7737 bonds, 975 residues, 4 models selected > show #!3 models > select add #3 11545 atoms, 11688 bonds, 1529 residues, 6 models selected > show #!4 models > select add #4 14955 atoms, 15178 bonds, 1965 residues, 8 models selected > select clear > select > ::name=""7DY""::name=""7IC""::name=""8D0""::name=""9GF""::name=""CLR""::name=""FMN""::name=""GOL""::name=""HOH""::name=""OLA""::name=""OLC""::name=""PEG""::name=""SO4""::name=""ZDG"" 657 atoms, 560 bonds, 131 residues, 4 models selected > hide sel target a > ui tool show ""Side View"" > select ::name=""9GF"" 27 atoms, 28 bonds, 1 residue, 1 model selected > show sel target ab > select ::name=""7DY"" 36 atoms, 38 bonds, 1 residue, 1 model selected > show sel target ab > hide #!2 models > hide #!3 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > show #!2 models > hide #!2 models > hide #!4 models > show #!4 models > select : 356 50 atoms, 52 bonds, 4 residues, 4 models selected > hide #!4 models > label (#!1 & sel) text ""{0.label_one_letter_code} > {0.number}{0.insertion_code}"" > show #!2 models > hide #!1 models > ~label (#!2 & sel) residues > show #!1 models > select clear Drag select of 3 atoms, 11 residues, 3 bonds > select #1/A:388 8 atoms, 7 bonds, 1 residue, 1 model selected > hide sel target a > select #2/A:387 8 atoms, 7 bonds, 1 residue, 1 model selected > hide sel target a > select #1/A:388 8 atoms, 7 bonds, 1 residue, 1 model selected > select #1/A:387 8 atoms, 7 bonds, 1 residue, 1 model selected > hide sel target a > select clear > open > ""/private/var/folders/j3/26dx8rz97pq7ywn7507_0pcw0000gn/T/TemporaryItems/NSIRD_screencaptureui_1ij97B/스크린샷 > 2025-04-18 오후 1.39.43.png"" Failed opening file /private/var/folders/j3/26dx8rz97pq7ywn7507_0pcw0000gn/T/TemporaryItems/NSIRD_screencaptureui_1ij97B/스크린샷 2025-04-18 오후 1.39.43.png: Image mode RGBA is not supported (L, P, I;16, I;16B, I;16L, I;16S, F, F;32BF, I, RGB) > open /Users/kimbomin/Library/CloudStorage/Dropbox/9b54.cif Summary of feedback from opening /Users/kimbomin/Library/CloudStorage/Dropbox/9b54.cif --- note | Fetching CCD A1AIW from https://files.wwpdb.org/pub/pdb/refdata/chem_comp/W/A1AIW/A1AIW.cif 9b54.cif title: Biased agonist bound CB1-Gi structure [more info...] Chain information for 9b54.cif #5 --- Chain | Description | UniProt A | Guanine nucleotide-binding protein G(i) subunit alpha-1 | GNAI1_HUMAN 1-354 B | Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 | GBB1_HUMAN 2-340 C | Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 | GBG2_HUMAN 1-71 R | Cannabinoid receptor 1 | CNR1_HUMAN -6-472 S | scFv16 | Non-standard residues in 9b54.cif #5 --- A1AIW — methyl N-{6-(4-carbamimidamidobutoxy)-1-[(4-fluorophenyl)methyl]-1H-indazole-3-carbonyl}-3-methyl- L-valinate > select add #5 8512 atoms, 8689 bonds, 6 pseudobonds, 1111 residues, 2 models selected > hide sel atoms > show sel cartoons > ui tool show Matchmaker > matchmaker #!5 to #1 Computing secondary structure Parameters --- Chain pairing | bb Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 7fee.pdb, chain A (#1) with 9b54.cif, chain R (#5), sequence alignment score = 1173.5 RMSD between 164 pruned atom pairs is 1.217 angstroms; (across all 265 pairs: 4.059) > select clear > view > ui tool show ""Side View"" > transparency 80 cartoons > select : 170 67 atoms, 65 bonds, 7 residues, 5 models selected > show sel & #!1-2,5 atoms > style sel & #!1-2,5 stick Changed 45 atom styles > show #!4 models > show #!3 models > hide #!3 models > show #!3 models > hide #!3 models > select : 356 64 atoms, 67 bonds, 5 residues, 5 models selected > show sel & #!1-2,4-5 atoms > style sel & #!1-2,4-5 stick Changed 50 atom styles > color sel & #!1-2,4-5 byhetero > select #1/A:356 14 atoms, 15 bonds, 1 residue, 1 model selected > select #1/A:355 6 atoms, 5 bonds, 1 residue, 1 model selected Drag select of 2 atoms, 23 residues, 1 bonds > show sel atoms > undo > select #4/A:478 14 atoms, 15 bonds, 1 residue, 1 model selected > hide #!2 models > hide #!1 models > hide #!5 models Drag select of 4 residues > show sel atoms > undo > select #4/A:478 14 atoms, 15 bonds, 1 residue, 1 model selected > show sel atoms > color sel byhetero > show #!2 models > show #!1 models > show #!5 models > show #!3 models > hide sel atoms > undo > select ~sel 23453 atoms, 23850 bonds, 6 pseudobonds, 3075 residues, 10 models selected > hide sel atoms > select clear > select : 356 64 atoms, 67 bonds, 5 residues, 5 models selected > show sel atoms > select : 170 67 atoms, 65 bonds, 7 residues, 5 models selected > show sel target ab > select clear > select ::name=""7DY"" 36 atoms, 38 bonds, 1 residue, 1 model selected > show sel target ab > select clear > save > /Users/kimbomin/Dropbox/share_dir/jieun_bomin/CB1_project/Chimera_Session/CB1_Ago_Anta_crystals.cxs > select ::name=""A1AIW"" 73 atoms, 75 bonds, 1 residue, 1 model selected > show sel target ab > select H 35 atoms, 1 residue, 1 model selected > hide sel target a > select > ::name=""7DY""::name=""7IC""::name=""8D0""::name=""9GF""::name=""A1AIW""::name=""CLR""::name=""FMN""::name=""GOL""::name=""HOH""::name=""OLA""::name=""OLC""::name=""PEG""::name=""SO4""::name=""ZDG"" 730 atoms, 635 bonds, 132 residues, 5 models selected > hide sel target a > select ::name=""A1AIW"" 73 atoms, 75 bonds, 1 residue, 1 model selected > show sel target ab > select clear > select ::name=""A1AIW"" 73 atoms, 75 bonds, 1 residue, 1 model selected > select ::name=""7DY"" 36 atoms, 38 bonds, 1 residue, 1 model selected > show sel target ab > select ::name=""9GF"" 27 atoms, 28 bonds, 1 residue, 1 model selected > show sel target ab > select : 155 73 atoms, 72 bonds, 7 residues, 5 models selected > show sel target ab > style sel stick Changed 73 atom styles > color sel byhetero > select add #5 8556 atoms, 8733 bonds, 6 pseudobonds, 1115 residues, 6 models selected > select subtract #5 44 atoms, 44 bonds, 4 residues, 4 models selected > select add #4 3443 atoms, 3523 bonds, 439 residues, 5 models selected > select add #3 7375 atoms, 7463 bonds, 992 residues, 6 models selected > select add #2 10906 atoms, 11063 bonds, 1446 residues, 7 models selected > select subtract #2 7364 atoms, 7452 bonds, 991 residues, 5 models selected > select subtract #3 3421 atoms, 3501 bonds, 437 residues, 3 models selected > select subtract #4 11 atoms, 11 bonds, 1 residue, 1 model selected > label sel text ""{0.label_one_letter_code} {0.number}{0.insertion_code}"" > select clear > hide #!4 models > hide #!5 models > hide #!1 models > hide #!2 models > show #!2 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!4 models > hide #!4 models > show #!5 models ===== Log before crash end ===== Log: Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.9 (2024-12-11) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 89.3 OpenGL renderer: Apple M2 OpenGL vendor: Apple Python: 3.11.4 Locale: UTF-8 Qt version: PyQt6 6.7.1, Qt 6.7.1 Qt runtime version: 6.7.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Air Model Identifier: Mac14,2 Model Number: Z15Y0001VKH/A Chip: Apple M2 Total Number of Cores: 8 (4 performance and 4 efficiency) Memory: 8 GB System Firmware Version: 11881.81.4 OS Loader Version: 11881.81.4 Software: System Software Overview: System Version: macOS 15.3.2 (24D81) Kernel Version: Darwin 24.3.0 Time since boot: 9일 2시간 30분 Graphics/Displays: Apple M2: Chipset Model: Apple M2 Type: GPU Bus: Built-In Total Number of Cores: 8 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: Color LCD: Display Type: Built-in Liquid Retina Display Resolution: 2560 x 1664 Retina Main Display: Yes Mirror: Off Online: Yes Automatically Adjust Brightness: No Connection Type: Internal LG HDR QHD: Resolution: 1920 x 1080 (1080p FHD - Full High Definition) UI Looks like: 1920 x 1080 @ 60.00Hz Mirror: Off Online: Yes Rotation: Supported Installed Packages: alabaster: 1.0.0 anyio: 4.7.0 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 3.0.0 auditwheel: 6.1.0 babel: 2.16.0 beautifulsoup4: 4.12.3 blockdiag: 3.0.0 blosc2: 3.0.0 build: 1.2.1 certifi: 2023.11.17 cftime: 1.6.4.post1 charset-normalizer: 3.4.0 ChimeraX-AddCharge: 1.5.18 ChimeraX-AddH: 2.2.6 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.5 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.16.1 ChimeraX-AlphaFold: 1.0.1 ChimeraX-AltlocExplorer: 1.1.2 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.58.8 ChimeraX-AtomicLibrary: 14.1.11 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 3.0.0 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.13.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.4.0 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.4 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.3 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.6 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.9 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.4 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2.6 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.4.1 ChimeraX-Hbonds: 2.5 ChimeraX-Help: 1.3 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.3 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-KVFinder: 1.2.1 ChimeraX-Label: 1.1.14 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.2 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.3 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.6 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.7.2 ChimeraX-MedicalToolbar: 1.1 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.14.2 ChimeraX-MMTF: 2.2 ChimeraX-ModelArchive: 1.0 ChimeraX-Modeller: 1.5.18 ChimeraX-ModelPanel: 1.5 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-MutationScores: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.14 ChimeraX-OrthoPick: 1.0.1 ChimeraX-PDB: 2.7.6 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.2 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.6.2 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.3.1 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.5.6 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.14 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.2.0 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-SimilarStructures: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.18.1 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.2.3 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.41 ChimeraX-Umap: 1.0 ChimeraX-uniprot: 2.3.1 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.4 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.4 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.3.1 cxservices: 1.2.3 cycler: 0.12.1 Cython: 3.0.10 debugpy: 1.8.9 decorator: 5.1.1 docutils: 0.21.2 executing: 2.1.0 filelock: 3.15.4 fonttools: 4.55.3 funcparserlib: 2.0.0a0 glfw: 2.8.0 grako: 3.16.5 h11: 0.14.0 h5py: 3.12.1 html2text: 2024.2.26 httpcore: 1.0.7 httpx: 0.28.1 idna: 3.10 ihm: 1.3 imagecodecs: 2024.6.1 imagesize: 1.4.1 ipykernel: 6.29.5 ipython: 8.26.0 ipywidgets: 8.1.5 jedi: 0.19.1 Jinja2: 3.1.4 jupyter_client: 8.6.2 jupyter_core: 5.7.2 jupyterlab_widgets: 3.0.13 kiwisolver: 1.4.7 line_profiler: 4.1.3 lxml: 5.2.2 lz4: 4.3.3 MarkupSafe: 3.0.2 matplotlib: 3.9.2 matplotlib-inline: 0.1.7 msgpack: 1.0.8 ndindex: 1.9.2 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.10.2 numpy: 1.26.4 openvr: 1.26.701 packaging: 23.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pexpect: 4.9.0 pillow: 10.4.0 pip: 24.2 pkginfo: 1.11.1 platformdirs: 4.3.6 prompt_toolkit: 3.0.48 psutil: 6.0.0 ptyprocess: 0.7.0 pure_eval: 0.2.3 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 pyelftools: 0.31 Pygments: 2.18.0 pynmrstar: 3.3.4 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.3401 pyparsing: 3.2.0 pyproject_hooks: 1.2.0 PyQt6-commercial: 6.7.1 PyQt6-Qt6: 6.7.3 PyQt6-WebEngine-commercial: 6.7.0 PyQt6-WebEngine-Qt6: 6.7.3 PyQt6-WebEngineSubwheel-Qt6: 6.7.3 PyQt6_sip: 13.8.0 python-dateutil: 2.9.0.post0 pytz: 2024.2 pyzmq: 26.2.0 qtconsole: 5.5.2 QtPy: 2.4.2 qtshim: 1.0 RandomWords: 0.4.0 requests: 2.32.3 scipy: 1.14.0 setuptools: 72.1.0 sfftk-rw: 0.8.1 six: 1.16.0 sniffio: 1.3.1 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.6 Sphinx: 8.0.2 sphinx-autodoc-typehints: 2.2.3 sphinxcontrib-applehelp: 2.0.0 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 2.0.0 sphinxcontrib-htmlhelp: 2.1.0 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 2.0.0 sphinxcontrib-serializinghtml: 2.0.0 stack-data: 0.6.3 superqt: 0.6.3 tables: 3.10.1 tcia_utils: 1.5.1 tifffile: 2024.7.24 tinyarray: 1.2.4 tornado: 6.4.2 traitlets: 5.14.3 typing_extensions: 4.12.2 tzdata: 2024.2 urllib3: 2.2.3 wcwidth: 0.2.13 webcolors: 24.6.0 wheel: 0.43.0 wheel-filename: 1.4.1 widgetsnbextension: 4.0.13 }}} " defect closed normal Window Toolkit duplicate all ChimeraX