id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
17405	Crash during auto-completion	chimerax-bug-report@…	Eric Pettersen	"{{{
The following bug report has been submitted:
Platform:        macOS-14.1.1-arm64-arm-64bit
ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC)
Description
Last time you used ChimeraX it crashed.
Please describe steps that led to the crash here.
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  ""vmSummary"" : ""ReadOnly portion of Libraries: Total=1.8G resident=0K(0%) swapped_out_or_unallocated=1.8G(100%)\nWritable regions: Total=17.4G written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=17.4G(100%)\n\n                                VIRTUAL   REGION \nREGION TYPE                        SIZE    COUNT (non-coalesced) \n===========                     =======  ======= \nAccelerate framework               384K        3 \nActivity Tracing                   256K        1 \nCG image                          1600K       37 \nColorSync                          864K       43 \nCoreAnimation                     3872K      223 \nCoreGraphics                        80K        5 \nCoreGraphics (reserved)             16K        1         reserved VM address space (unallocated)\nCoreUI image data                 5680K       43 \nFoundation                          48K        2 \nKernel Alloc Once                   32K        1 \nMALLOC                            15.5G      219 \nMALLOC guard page                  384K       24 \nMach message                        64K        3 \nOpenGL GLSL                        384K        4 \nSTACK GUARD                       56.9M       59 \nStack                            204.0M       59 \nVM_ALLOCATE                        1.4G      959 \nVM_ALLOCATE (reserved)           224.0M        1         reserved VM address space (unallocated)\n__AUTH                            2177K      398 \n__AUTH_CONST                      31.8M      623 \n__CTF                               824        1 \n__DATA                            22.4M      770 \n__DATA_CONST                      41.8M      778 \n__DATA_DIRTY                      2022K      235 \n__FONT_DATA                          4K        1 \n__GLSLBUILTINS                    5174K        1 \n__INFO_FILTER                         8        1 \n__LINKEDIT                       915.5M      150 \n__OBJC_RO                         70.8M        1 \n__OBJC_RW                         2156K        1 \n__TEXT                           933.9M      795 \ndyld private memory                320K        4 \nmapped file                      637.2M      107 \nshared memory                     3152K       23 \n===========                     =======  ======= \nTOTAL                             20.0G     5576 \nTOTAL, minus reserved VM space    19.8G     5576 \n"",
  ""legacyInfo"" : {
  ""threadTriggered"" : {
    ""name"" : ""CrBrowserMain"",
    ""queue"" : ""com.apple.main-thread""
  }
},
  ""logWritingSignature"" : ""8cf1727a1130d27f0694d0fbbe81137743622f34"",
  ""trialInfo"" : {
  ""rollouts"" : [
    {
      ""rolloutId"" : ""645c2d2f9e69a025b0a37e29"",
      ""factorPackIds"" : {

      },
      ""deploymentId"" : 240000003
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}
}
===== Log before crash start =====
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open
> /Users/shoichitachiyama/Downloads/cryosparc_P3_J166_002_volume_map_sharp.mrc

Opened cryosparc_P3_J166_002_volume_map_sharp.mrc as #1, grid size
448,448,448, pixel 1.14, shown at level 0.0887, step 2, values float32  

> volume #1 level 0.05387

> volume #1 step 1

> volume #1 level 0.01639

> close #1

> open
> /Users/shoichitachiyama/Downloads/cryosparc_P3_J158_class_01_00042_volume_sharp.mrc

Opened cryosparc_P3_J158_class_01_00042_volume_sharp.mrc as #1, grid size
120,120,120, pixel 4.27, shown at level 0.636, step 1, values float32  

> volume #1 level 0.03766

> volume #1 level 0.1706

> open /Users/shoichitachiyama/Library/CloudStorage/OneDrive-
> YaleUniversity/Jun_Lab_documents/Project-
> documents/P_aeruginosa_T4pili/Segmentation_02232025/T4pili_model.pdb

Summary of feedback from opening
/Users/shoichitachiyama/Library/CloudStorage/OneDrive-
YaleUniversity/Jun_Lab_documents/Project-
documents/P_aeruginosa_T4pili/Segmentation_02232025/T4pili_model.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 LEU A 7 GLY A 93 1 87  
Start residue of secondary structure not found: HELIX 2 2 ARG A 95 ARG A 107 1
13  
Start residue of secondary structure not found: HELIX 3 3 ASN A 134 ASP A 145
1 12  
Start residue of secondary structure not found: HELIX 4 4 GLU A 183 GLN A 194
1 12  
Start residue of secondary structure not found: HELIX 6 6 LEU B 3 SER B 9 1 7  
7 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 14 14 LEU B 100 GLN B 102
1 3  
Start residue of secondary structure not found: HELIX 15 15 ASP B 106 GLU B
108 1 3  
Start residue of secondary structure not found: HELIX 16 16 VAL B 109 GLY B
122 1 14  
Start residue of secondary structure not found: HELIX 17 17 TYR B 154 GLY B
163 1 10  
Start residue of secondary structure not found: HELIX 18 18 VAL B 164 SER B
166 1 3  
Start residue of secondary structure not found: HELIX 19 19 ASP B 202 LYS B
206 1 5  
Start residue of secondary structure not found: HELIX 20 20 ARG C 2 GLY C 17 1
16  
16 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 13 13 1 LYS C 139 SER C
144 0  
Start residue of secondary structure not found: SHEET 14 14 1 LYS C 147 PRO C
155 0  
Start residue of secondary structure not found: SHEET 15 15 1 TRP C 161 THR C
169 0  
Start residue of secondary structure not found: HELIX 1 1 LEU A 7 GLY A 93 1
87  
Start residue of secondary structure not found: HELIX 2 2 ARG A 95 ARG A 107 1
13  
Start residue of secondary structure not found: HELIX 3 3 ASN A 134 ASP A 145
1 12  
9 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 14 14 LEU B 100 GLN B 102
1 3  
Start residue of secondary structure not found: HELIX 15 15 ASP B 106 GLU B
108 1 3  
Start residue of secondary structure not found: HELIX 16 16 VAL B 109 GLY B
122 1 14  
Start residue of secondary structure not found: HELIX 17 17 TYR B 154 GLY B
163 1 10  
Start residue of secondary structure not found: HELIX 18 18 VAL B 164 SER B
166 1 3  
Start residue of secondary structure not found: HELIX 19 19 ASP B 202 LYS B
206 1 5  
Start residue of secondary structure not found: HELIX 20 20 ARG C 2 GLY C 17 1
16  
16 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 13 13 1 LYS C 139 SER C
144 0  
Start residue of secondary structure not found: SHEET 14 14 1 LYS C 147 PRO C
155 0  
Start residue of secondary structure not found: SHEET 15 15 1 TRP C 161 THR C
169 0  
Start residue of secondary structure not found: HELIX 1 1 LEU A 7 GLY A 93 1
87  
Start residue of secondary structure not found: HELIX 2 2 ARG A 95 ARG A 107 1
13  
Start residue of secondary structure not found: HELIX 3 3 ASN A 134 ASP A 145
1 12  
75 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 1 1 LEU A 7 GLY A 93 1 87  
Start residue of secondary structure not found: HELIX 2 2 ARG A 95 ARG A 107 1
13  
Start residue of secondary structure not found: HELIX 3 3 ASN A 134 ASP A 145
1 12  
Start residue of secondary structure not found: HELIX 4 4 GLU A 183 GLN A 194
1 12  
Start residue of secondary structure not found: HELIX 5 5 GLY A 195 LYS A 197
1 3  
Start residue of secondary structure not found: HELIX 6 6 LEU B 3 SER B 9 1 7  
7 messages similar to the above omitted  
End residue of secondary structure not found: HELIX 14 14 LEU B 100 GLN B 102
1 3  
End residue of secondary structure not found: HELIX 15 15 ASP B 106 GLU B 108
1 3  
Start residue of secondary structure not found: HELIX 16 16 VAL B 109 GLY B
122 1 14  
Start residue of secondary structure not found: HELIX 17 17 TYR B 154 GLY B
163 1 10  
Start residue of secondary structure not found: HELIX 18 18 VAL B 164 SER B
166 1 3  
Start residue of secondary structure not found: HELIX 19 19 ASP B 202 LYS B
206 1 5  
Start residue of secondary structure not found: HELIX 20 20 ARG C 2 GLY C 17 1
16  
8 messages similar to the above omitted  
End residue of secondary structure not found: SHEET 5 5 1 GLU B 126 LEU B 132
0  
End residue of secondary structure not found: SHEET 6 6 1 TYR B 141 GLY B 152
0  
Start residue of secondary structure not found: SHEET 7 7 1 VAL B 171 LEU B
173 0  
Start residue of secondary structure not found: SHEET 8 8 1 PHE B 176 PRO B
180 0  
End residue of secondary structure not found: SHEET 9 9 1 LEU B 189 TYR B 200
0  
Start residue of secondary structure not found: SHEET 10 10 1 GLU C 103 ASN C
110 0  
Start residue of secondary structure not found: SHEET 11 11 1 GLY C 113 GLY C
120 0  
Start residue of secondary structure not found: SHEET 12 12 1 GLY C 123 ARG C
128 0  
Start residue of secondary structure not found: SHEET 13 13 1 LYS C 139 SER C
144 0  
Start residue of secondary structure not found: SHEET 14 14 1 LYS C 147 PRO C
155 0  
1 messages similar to the above omitted  
  
Chain information for T4pili_model.pdb  
---  
Chain | Description  
2.1/A 2.2/A 2.1/B 2.2/B 2.1/C 2.2/C 2.1/D 2.2/D 2.1/E 2.2/E 2.1/F 2.2/F 2.1/G 2.2/G | No description available  
2.3/A 2.4/A 2.5/A 2.6/A 2.7/A 2.8/A 2.9/A | No description available  
2.12/A 2.12/B 2.12/C | No description available  
2.3/B 2.4/B 2.5/B 2.6/B 2.7/B 2.8/B 2.9/B | No description available  
2.3/C 2.4/C 2.5/C 2.6/C 2.7/C 2.8/C 2.9/C | No description available  
2.10/a 2.11/a 2.10/b 2.11/b 2.10/c 2.11/c 2.10/d 2.11/d 2.10/e 2.11/e 2.10/f 2.11/f 2.10/g 2.11/g 2.10/h 2.11/h 2.10/i 2.11/i 2.10/j 2.11/j 2.10/k 2.11/k 2.10/l 2.11/l 2.10/m 2.11/m 2.10/n 2.11/n 2.10/o 2.11/o 2.10/p 2.11/p | No description available  
  

> select add #2

183828 atoms, 186039 bonds, 19747 residues, 13 models selected  

> hide sel atoms

> show sel cartoons

> select subtract #2.1

145727 atoms, 147378 bonds, 14749 residues, 12 models selected  

> select add #2.1

183828 atoms, 186039 bonds, 19747 residues, 13 models selected  

> select subtract #2.12

175221 atoms, 177297 bonds, 18625 residues, 12 models selected  

> select subtract #2.11

141493 atoms, 143329 bonds, 16337 residues, 11 models selected  

> select add #2.11

175221 atoms, 177297 bonds, 18625 residues, 12 models selected  

> select subtract #2.3

170712 atoms, 172720 bonds, 18046 residues, 11 models selected  

> select add #2.3

175221 atoms, 177297 bonds, 18625 residues, 12 models selected  

> hide #2.12 models

> hide #!1 models

> show #2.12 models

> hide #2.12 models

> save /Users/shoichitachiyama/Desktop/Pa-T4pili-model.pdb selectedOnly true

> open /Users/shoichitachiyama/Desktop/Pa-T4pili-model.pdb

Summary of feedback from opening /Users/shoichitachiyama/Desktop/Pa-T4pili-
model.pdb  
---  
warnings | Start residue of secondary structure not found: HELIX 1 1 GLY A 195 LYS A 197 1 3  
Start residue of secondary structure not found: HELIX 1 1 GLY A 195 LYS A 197
1 3  
  
Chain information for Pa-T4pili-model.pdb  
---  
Chain | Description  
3.1/A 3.2/A 3.1/B 3.2/B 3.1/C 3.2/C 3.1/D 3.2/D 3.1/E 3.2/E 3.1/F 3.2/F 3.1/G 3.2/G | No description available  
3.3/A 3.4/A 3.5/A 3.6/A 3.7/A 3.8/A 3.9/A | No description available  
3.3/B 3.4/B 3.5/B 3.6/B 3.7/B 3.8/B 3.9/B | No description available  
3.3/C 3.4/C 3.5/C 3.6/C 3.7/C 3.8/C 3.9/C | No description available  
3.10/a 3.11/a 3.10/b 3.11/b 3.10/c 3.11/c 3.10/d 3.11/d 3.10/e 3.11/e 3.10/f 3.11/f 3.10/g 3.11/g 3.10/h 3.11/h 3.10/i 3.11/i 3.10/j 3.11/j 3.10/k 3.11/k 3.10/l 3.11/l 3.10/m 3.11/m 3.10/n 3.11/n 3.10/o 3.11/o 3.10/p 3.11/p | No description available  
  

> hide #!2 models

> select add #2

183828 atoms, 186039 bonds, 19747 residues, 13 models selected  

> show #!1 models

> select subtract #2

Nothing selected  

> select add #3

175221 atoms, 177297 bonds, 18625 residues, 12 models selected  

> hide sel atoms

> show sel cartoons

> color #1 #b2b2b2a6 models

> ui mousemode right ""translate selected models""

> view matrix models #3,1,0,0,-8.6797,0,1,0,-112.87,0,0,1,-67.443

> ui mousemode right ""rotate selected models""

> view matrix models
> #3,0.80602,-0.46568,0.36534,117.91,-0.47941,-0.87564,-0.058462,822.16,0.34713,-0.12802,-0.92904,530.59

> view matrix models
> #3,0.61774,0.78632,0.0099479,-164.52,0.78562,-0.61653,-0.051811,237.86,-0.034607,0.039821,-0.99861,639.33

> ui mousemode right ""translate selected models""

> view matrix models
> #3,0.61774,0.78632,0.0099479,-285.79,0.78562,-0.61653,-0.051811,223.13,-0.034607,0.039821,-0.99861,590.1

> view matrix models
> #3,0.61774,0.78632,0.0099479,-294.96,0.78562,-0.61653,-0.051811,210.01,-0.034607,0.039821,-0.99861,588.15

> volume #1 level 0.1844

> hide #3.1 models

> show #3.1 models

> hide #3.1 models

> show #3.1 models

> hide #3.11 models

> show #3.11 models

> combine #3

Remapping chain ID 'A' in Pa-T4pili-model.pdb #3.2 to 'H'  
Remapping chain ID 'B' in Pa-T4pili-model.pdb #3.2 to 'I'  
Remapping chain ID 'C' in Pa-T4pili-model.pdb #3.2 to 'J'  
Remapping chain ID 'D' in Pa-T4pili-model.pdb #3.2 to 'K'  
Remapping chain ID 'E' in Pa-T4pili-model.pdb #3.2 to 'L'  
Remapping chain ID 'F' in Pa-T4pili-model.pdb #3.2 to 'M'  
Remapping chain ID 'G' in Pa-T4pili-model.pdb #3.2 to 'N'  
Remapping chain ID 'A' in Pa-T4pili-model.pdb #3.3 to 'O'  
Remapping chain ID 'B' in Pa-T4pili-model.pdb #3.3 to 'P'  
Remapping chain ID 'C' in Pa-T4pili-model.pdb #3.3 to 'Q'  
Remapping chain ID 'A' in Pa-T4pili-model.pdb #3.4 to 'R'  
Remapping chain ID 'B' in Pa-T4pili-model.pdb #3.4 to 'S'  
Remapping chain ID 'C' in Pa-T4pili-model.pdb #3.4 to 'T'  
Remapping chain ID 'A' in Pa-T4pili-model.pdb #3.5 to 'U'  
Remapping chain ID 'B' in Pa-T4pili-model.pdb #3.5 to 'V'  
Remapping chain ID 'C' in Pa-T4pili-model.pdb #3.5 to 'W'  
Remapping chain ID 'A' in Pa-T4pili-model.pdb #3.6 to 'X'  
Remapping chain ID 'B' in Pa-T4pili-model.pdb #3.6 to 'Y'  
Remapping chain ID 'C' in Pa-T4pili-model.pdb #3.6 to 'Z'  
Remapping chain ID 'A' in Pa-T4pili-model.pdb #3.7 to 'a'  
Remapping chain ID 'B' in Pa-T4pili-model.pdb #3.7 to 'b'  
Remapping chain ID 'C' in Pa-T4pili-model.pdb #3.7 to 'c'  
Remapping chain ID 'A' in Pa-T4pili-model.pdb #3.8 to 'd'  
Remapping chain ID 'B' in Pa-T4pili-model.pdb #3.8 to 'e'  
Remapping chain ID 'C' in Pa-T4pili-model.pdb #3.8 to 'f'  
Remapping chain ID 'A' in Pa-T4pili-model.pdb #3.9 to 'g'  
Remapping chain ID 'B' in Pa-T4pili-model.pdb #3.9 to 'h'  
Remapping chain ID 'C' in Pa-T4pili-model.pdb #3.9 to 'i'  
Remapping chain ID 'a' in Pa-T4pili-model.pdb #3.10 to 'q'  
Remapping chain ID 'b' in Pa-T4pili-model.pdb #3.10 to 'r'  
Remapping chain ID 'c' in Pa-T4pili-model.pdb #3.10 to 's'  
Remapping chain ID 'd' in Pa-T4pili-model.pdb #3.10 to 't'  
Remapping chain ID 'e' in Pa-T4pili-model.pdb #3.10 to 'u'  
Remapping chain ID 'f' in Pa-T4pili-model.pdb #3.10 to 'v'  
Remapping chain ID 'g' in Pa-T4pili-model.pdb #3.10 to 'w'  
Remapping chain ID 'h' in Pa-T4pili-model.pdb #3.10 to 'x'  
Remapping chain ID 'i' in Pa-T4pili-model.pdb #3.10 to 'y'  
Remapping chain ID 'a' in Pa-T4pili-model.pdb #3.11 to 'z'  
Remapping chain ID 'b' in Pa-T4pili-model.pdb #3.11 to '1'  
Remapping chain ID 'c' in Pa-T4pili-model.pdb #3.11 to '2'  
Remapping chain ID 'd' in Pa-T4pili-model.pdb #3.11 to '3'  
Remapping chain ID 'e' in Pa-T4pili-model.pdb #3.11 to '4'  
Remapping chain ID 'f' in Pa-T4pili-model.pdb #3.11 to '5'  
Remapping chain ID 'g' in Pa-T4pili-model.pdb #3.11 to '6'  
Remapping chain ID 'h' in Pa-T4pili-model.pdb #3.11 to '7'  
Remapping chain ID 'i' in Pa-T4pili-model.pdb #3.11 to '8'  
Remapping chain ID 'j' in Pa-T4pili-model.pdb #3.11 to '9'  
Remapping chain ID 'k' in Pa-T4pili-model.pdb #3.11 to '0'  
Remapping chain ID 'l' in Pa-T4pili-model.pdb #3.11 to 'AA'  
Remapping chain ID 'm' in Pa-T4pili-model.pdb #3.11 to 'AB'  
Remapping chain ID 'n' in Pa-T4pili-model.pdb #3.11 to 'AC'  
Remapping chain ID 'o' in Pa-T4pili-model.pdb #3.11 to 'AD'  
Remapping chain ID 'p' in Pa-T4pili-model.pdb #3.11 to 'AE'  

> hide #!3 models

> select subtract #3

Nothing selected  

> ui tool show ""Fit in Map""

The cached device pixel ratio value was stale on window expose. Please file a
QTBUG which explains how to reproduce.  

> fitmap #4 inMap #1

Fit molecule combination (#4) to map
cryosparc_P3_J158_class_01_00042_volume_sharp.mrc (#1) using 175221 atoms  
average map value = 0.2697, steps = 120  
shifted from previous position = 20.7  
rotated from previous position = 12 degrees  
atoms outside contour = 73778, contour level = 0.1844  
  
Position of combination (#4) relative to
cryosparc_P3_J158_class_01_00042_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.73355816 0.67109284 -0.10736301 -261.72186139  
0.66348419 -0.74136835 -0.10080521 314.05592716  
-0.14724520 0.00271282 -0.98909630 633.55497280  
Axis 0.93095433 0.35866689 -0.06842582  
Axis point 0.00000000 198.15625441 312.78612779  
Rotation angle (degrees) 176.81283703  
Shift along axis -174.36115980  
  

> fitmap #4 inMap #1

Fit molecule combination (#4) to map
cryosparc_P3_J158_class_01_00042_volume_sharp.mrc (#1) using 175221 atoms  
average map value = 0.2697, steps = 180  
shifted from previous position = 0.222  
rotated from previous position = 0.0887 degrees  
atoms outside contour = 73685, contour level = 0.1844  
  
Position of combination (#4) relative to
cryosparc_P3_J158_class_01_00042_volume_sharp.mrc (#1) coordinates:  
Matrix rotation and translation  
0.73384698 0.67097242 -0.10613493 -262.12590349  
0.66349883 -0.74147664 -0.09990839 313.83876983  
-0.14573235 0.00289706 -0.98931981 633.09076365  
Axis 0.93103272 0.35860441 -0.06768277  
Axis point 0.00000000 198.18300818 312.60142421  
Rotation angle (degrees) 176.83506567  
Shift along axis -174.35316467  
  

> view orient

> turn x 90

> select add #4

175221 atoms, 177297 bonds, 18625 residues, 1 model selected  

> ui mousemode right ""rotate selected models""

> view matrix models
> #4,0.74491,0.66715,-0.0042783,-303.6,0.6635,-0.74148,-0.099908,313.84,-0.069826,0.071584,-0.99499,579.03

> ui mousemode right ""translate selected models""

> view matrix models
> #4,0.74491,0.66715,-0.0042783,-292.51,0.6635,-0.74148,-0.099908,313.84,-0.069826,0.071584,-0.99499,579.27

> view orient

> ui tool show ""Side View""

> surface dust #1 size 42.7

> color #1 #808080a6 models

> color #1 #808080c6 models

> color #1 #808080c8 models

> color #1 #808080c7 models

> ui mousemode right ""rotate selected models""

> view matrix models
> #4,0.77772,0.62855,-0.0093577,-288.16,0.62473,-0.77447,-0.099561,341.6,-0.069826,0.071584,-0.99499,579.27

> view matrix models
> #4,0.77554,0.63007,-0.039397,-276.5,0.62994,-0.77645,-0.017108,309.04,-0.041369,-0.01155,-0.99908,602.35

> ui mousemode right ""translate selected models""

> view matrix models
> #4,0.77554,0.63007,-0.039397,-276.03,0.62994,-0.77645,-0.017108,314.72,-0.041369,-0.01155,-0.99908,602.35

> select clear

> view orient

> turn x 90

> select add #4

175221 atoms, 177297 bonds, 18625 residues, 1 model selected  

> ui mousemode right ""rotate selected models""

> view matrix models
> #4,0.7766,0.62999,0.0033099,-292.63,0.62994,-0.77645,-0.017108,314.72,-0.0082078,0.015371,-0.99985,579.29

> ui mousemode right ""translate selected models""

> view matrix models
> #4,0.7766,0.62999,0.0033099,-288.84,0.62994,-0.77645,-0.017108,314.72,-0.0082078,0.015371,-0.99985,578.97

> turn y 10

> view matrix models
> #4,0.7766,0.62999,0.0033099,-287.51,0.62994,-0.77645,-0.017108,318.37,-0.0082078,0.015371,-0.99985,579.67

> turn y 10

> ui mousemode right ""rotate selected models""

> view matrix models
> #4,0.77658,0.63002,-0.00012918,-286.21,0.63001,-0.77655,-0.0076591,314.8,-0.0049257,0.0058665,-0.99997,582.17

> ui mousemode right ""translate selected models""

> view matrix models
> #4,0.77658,0.63002,-0.00012918,-286.61,0.63001,-0.77655,-0.0076591,315.91,-0.0049257,0.0058665,-0.99997,581.77

> split #4

Split combination (#4) into 67 models  
Chain information for combination 0 #4.1  
---  
Chain | Description  
0 | No description available  
  
Chain information for combination 1 #4.2  
---  
Chain | Description  
1 | No description available  
  
Chain information for combination 2 #4.3  
---  
Chain | Description  
2 | No description available  
  
Chain information for combination 3 #4.4  
---  
Chain | Description  
3 | No description available  
  
Chain information for combination 4 #4.5  
---  
Chain | Description  
4 | No description available  
  
Chain information for combination 5 #4.6  
---  
Chain | Description  
5 | No description available  
  
Chain information for combination 6 #4.7  
---  
Chain | Description  
6 | No description available  
  
Chain information for combination 7 #4.8  
---  
Chain | Description  
7 | No description available  
  
Chain information for combination 8 #4.9  
---  
Chain | Description  
8 | No description available  
  
Chain information for combination 9 #4.10  
---  
Chain | Description  
9 | No description available  
  
Chain information for combination A #4.11  
---  
Chain | Description  
A | No description available  
  
Chain information for combination AA #4.12  
---  
Chain | Description  
AA | No description available  
  
Chain information for combination AB #4.13  
---  
Chain | Description  
AB | No description available  
  
Chain information for combination AC #4.14  
---  
Chain | Description  
AC | No description available  
  
Chain information for combination AD #4.15  
---  
Chain | Description  
AD | No description available  
  
Chain information for combination AE #4.16  
---  
Chain | Description  
AE | No description available  
  
Chain information for combination B #4.17  
---  
Chain | Description  
B | No description available  
  
Chain information for combination C #4.18  
---  
Chain | Description  
C | No description available  
  
Chain information for combination D #4.19  
---  
Chain | Description  
D | No description available  
  
Chain information for combination E #4.20  
---  
Chain | Description  
E | No description available  
  
Chain information for combination F #4.21  
---  
Chain | Description  
F | No description available  
  
Chain information for combination G #4.22  
---  
Chain | Description  
G | No description available  
  
Chain information for combination H #4.23  
---  
Chain | Description  
H | No description available  
  
Chain information for combination I #4.24  
---  
Chain | Description  
I | No description available  
  
Chain information for combination J #4.25  
---  
Chain | Description  
J | No description available  
  
Chain information for combination K #4.26  
---  
Chain | Description  
K | No description available  
  
Chain information for combination L #4.27  
---  
Chain | Description  
L | No description available  
  
Chain information for combination M #4.28  
---  
Chain | Description  
M | No description available  
  
Chain information for combination N #4.29  
---  
Chain | Description  
N | No description available  
  
Chain information for combination O #4.30  
---  
Chain | Description  
O | No description available  
  
Chain information for combination P #4.31  
---  
Chain | Description  
P | No description available  
  
Chain information for combination Q #4.32  
---  
Chain | Description  
Q | No description available  
  
Chain information for combination R #4.33  
---  
Chain | Description  
R | No description available  
  
Chain information for combination S #4.34  
---  
Chain | Description  
S | No description available  
  
Chain information for combination T #4.35  
---  
Chain | Description  
T | No description available  
  
Chain information for combination U #4.36  
---  
Chain | Description  
U | No description available  
  
Chain information for combination V #4.37  
---  
Chain | Description  
V | No description available  
  
Chain information for combination W #4.38  
---  
Chain | Description  
W | No description available  
  
Chain information for combination X #4.39  
---  
Chain | Description  
X | No description available  
  
Chain information for combination Y #4.40  
---  
Chain | Description  
Y | No description available  
  
Chain information for combination Z #4.41  
---  
Chain | Description  
Z | No description available  
  
Chain information for combination a #4.42  
---  
Chain | Description  
a | No description available  
  
Chain information for combination b #4.43  
---  
Chain | Description  
b | No description available  
  
Chain information for combination c #4.44  
---  
Chain | Description  
c | No description available  
  
Chain information for combination d #4.45  
---  
Chain | Description  
d | No description available  
  
Chain information for combination e #4.46  
---  
Chain | Description  
e | No description available  
  
Chain information for combination f #4.47  
---  
Chain | Description  
f | No description available  
  
Chain information for combination g #4.48  
---  
Chain | Description  
g | No description available  
  
Chain information for combination h #4.49  
---  
Chain | Description  
h | No description available  
  
Chain information for combination i #4.50  
---  
Chain | Description  
i | No description available  
  
Chain information for combination j #4.51  
---  
Chain | Description  
j | No description available  
  
Chain information for combination k #4.52  
---  
Chain | Description  
k | No description available  
  
Chain information for combination l #4.53  
---  
Chain | Description  
l | No description available  
  
Chain information for combination m #4.54  
---  
Chain | Description  
m | No description available  
  
Chain information for combination n #4.55  
---  
Chain | Description  
n | No description available  
  
Chain information for combination o #4.56  
---  
Chain | Description  
o | No description available  
  
Chain information for combination p #4.57  
---  
Chain | Description  
p | No description available  
  
Chain information for combination q #4.58  
---  
Chain | Description  
q | No description available  
  
Chain information for combination r #4.59  
---  
Chain | Description  
r | No description available  
  
Chain information for combination s #4.60  
---  
Chain | Description  
s | No description available  
  
Chain information for combination t #4.61  
---  
Chain | Description  
t | No description available  
  
Chain information for combination u #4.62  
---  
Chain | Description  
u | No description available  
  
Chain information for combination v #4.63  
---  
Chain | Description  
v | No description available  
  
Chain information for combination w #4.64  
---  
Chain | Description  
w | No description available  
  
Chain information for combination x #4.65  
---  
Chain | Description  
x | No description available  
  
Chain information for combination y #4.66  
---  
Chain | Description  
y | No description available  
  
Chain information for combination z #4.67  
---  
Chain | Description  
z | No description available  
  

> hide #4.1 models

> show #4.1 models

> hide #4.1 models

> hide #4.2 models

> hide #4.3 models

> show #4.3 models

> hide #!1 models

> show #4.2 models

> show #4.1 models

> hide #4.11 models

> show #4.11 models

> hide #4.2 models

> show #4.2 models

> hide #4.1 models

> hide #4.67 models

> show #4.67 models

> hide #4.66 models

> show #4.66 models

> hide #4.57 models

> show #4.57 models

Drag select of 623 residues  

> hide #4.10 models

> hide #4.12 models

> hide #4.13 models

> hide #4.14 models

> hide #4.15 models

> hide #4.16 models

> select clear

> select add #4.2

2108 atoms, 2123 bonds, 143 residues, 1 model selected  

> select add #4.3

4216 atoms, 4246 bonds, 286 residues, 2 models selected  

> select add #4.4

6324 atoms, 6369 bonds, 429 residues, 3 models selected  

> select add #4.5

8432 atoms, 8492 bonds, 572 residues, 4 models selected  

> select add #4.6

10540 atoms, 10615 bonds, 715 residues, 5 models selected  

> select add #4.7

12648 atoms, 12738 bonds, 858 residues, 6 models selected  

> select add #4.8

14756 atoms, 14861 bonds, 1001 residues, 7 models selected  

> select add #4.9

16864 atoms, 16984 bonds, 1144 residues, 8 models selected  

> select add #4.11

22307 atoms, 22507 bonds, 1858 residues, 9 models selected  

> select add #4.17

27750 atoms, 28030 bonds, 2572 residues, 10 models selected  

> select add #4.18

33193 atoms, 33553 bonds, 3286 residues, 11 models selected  

> select add #4.19

38636 atoms, 39076 bonds, 4000 residues, 12 models selected  

> select add #4.20

44079 atoms, 44599 bonds, 4714 residues, 13 models selected  

> select add #4.21

49522 atoms, 50122 bonds, 5428 residues, 14 models selected  

> select add #4.22

54965 atoms, 55645 bonds, 6142 residues, 15 models selected  

> select add #4.23

60408 atoms, 61168 bonds, 6856 residues, 16 models selected  

> select add #4.25

65851 atoms, 66691 bonds, 7570 residues, 17 models selected  

> select add #4.24

71294 atoms, 72214 bonds, 8284 residues, 18 models selected  

> select add #4.27

76737 atoms, 77737 bonds, 8998 residues, 19 models selected  

> select add #4.26

82180 atoms, 83260 bonds, 9712 residues, 20 models selected  

> select add #4.29

87623 atoms, 88783 bonds, 10426 residues, 21 models selected  

> select add #4.28

93066 atoms, 94306 bonds, 11140 residues, 22 models selected  

> select add #4.30

94628 atoms, 95886 bonds, 11338 residues, 23 models selected  

> select add #4.31

96233 atoms, 97517 bonds, 11545 residues, 24 models selected  

> select add #4.32

97575 atoms, 98883 bonds, 11719 residues, 25 models selected  

> select add #4.33

99137 atoms, 100463 bonds, 11917 residues, 26 models selected  

> select add #4.34

100742 atoms, 102094 bonds, 12124 residues, 27 models selected  

> select add #4.35

102084 atoms, 103460 bonds, 12298 residues, 28 models selected  

> select add #4.36

103646 atoms, 105040 bonds, 12496 residues, 29 models selected  

> select add #4.37

105251 atoms, 106671 bonds, 12703 residues, 30 models selected  

> select add #4.38

106593 atoms, 108037 bonds, 12877 residues, 31 models selected  

> select add #4.39

108155 atoms, 109617 bonds, 13075 residues, 32 models selected  

> select add #4.40

109760 atoms, 111248 bonds, 13282 residues, 33 models selected  

> select add #4.41

111102 atoms, 112614 bonds, 13456 residues, 34 models selected  

> select add #4.42

112664 atoms, 114194 bonds, 13654 residues, 35 models selected  

> select add #4.43

114269 atoms, 115825 bonds, 13861 residues, 36 models selected  

> select add #4.44

115611 atoms, 117191 bonds, 14035 residues, 37 models selected  

> select add #4.45

117173 atoms, 118771 bonds, 14233 residues, 38 models selected  

> select add #4.46

118778 atoms, 120402 bonds, 14440 residues, 39 models selected  

> select add #4.47

120120 atoms, 121768 bonds, 14614 residues, 40 models selected  

> select add #4.48

121682 atoms, 123348 bonds, 14812 residues, 41 models selected  

> select add #4.49

123287 atoms, 124979 bonds, 15019 residues, 42 models selected  

> select add #4.51

125395 atoms, 127102 bonds, 15162 residues, 43 models selected  

> select add #4.50

126737 atoms, 128468 bonds, 15336 residues, 44 models selected  

> select add #4.53

128845 atoms, 130591 bonds, 15479 residues, 45 models selected  

> select add #4.52

130953 atoms, 132714 bonds, 15622 residues, 46 models selected  

> select add #4.54

133061 atoms, 134837 bonds, 15765 residues, 47 models selected  

> select add #4.55

135169 atoms, 136960 bonds, 15908 residues, 48 models selected  

> select add #4.56

137277 atoms, 139083 bonds, 16051 residues, 49 models selected  

> select add #4.57

139385 atoms, 141206 bonds, 16194 residues, 50 models selected  

> select add #4.58

141493 atoms, 143329 bonds, 16337 residues, 51 models selected  

> select add #4.59

143601 atoms, 145452 bonds, 16480 residues, 52 models selected  

> select add #4.60

145709 atoms, 147575 bonds, 16623 residues, 53 models selected  

> select add #4.61

147817 atoms, 149698 bonds, 16766 residues, 54 models selected  

> select add #4.62

149925 atoms, 151821 bonds, 16909 residues, 55 models selected  

> select add #4.63

152033 atoms, 153944 bonds, 17052 residues, 56 models selected  

> select add #4.64

154141 atoms, 156067 bonds, 17195 residues, 57 models selected  

> select add #4.65

156249 atoms, 158190 bonds, 17338 residues, 58 models selected  

> select add #4.66

158357 atoms, 160313 bonds, 17481 residues, 59 models selected  

> select add #4.67

160465 atoms, 162436 bonds, 17624 residues, 60 models selected  


===== Log before crash end =====

Log:
Startup Messages  
---  
note | available bundle cache has not been initialized yet  
  
UCSF ChimeraX version: 1.8 (2024-06-10)  
© 2016-2024 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  




OpenGL version: 4.1 Metal - 88
OpenGL renderer: Apple M1 Max
OpenGL vendor: Apple

Python: 3.11.4
Locale: UTF-8
Qt version: PyQt6 6.6.1, Qt 6.6.1
Qt runtime version: 6.6.3
Qt platform: cocoa
Hardware:

    Hardware Overview:

      Model Name: Mac Studio
      Model Identifier: Mac13,1
      Model Number: Z14J000E1LL/A
      Chip: Apple M1 Max
      Total Number of Cores: 10 (8 performance and 2 efficiency)
      Memory: 64 GB
      System Firmware Version: 10151.41.12
      OS Loader Version: 10151.41.12

Software:

    System Software Overview:

      System Version: macOS 14.1.1 (23B81)
      Kernel Version: Darwin 23.1.0
      Time since boot: 28 days, 19 hours, 18 minutes

Graphics/Displays:

    Apple M1 Max:

      Chipset Model: Apple M1 Max
      Type: GPU
      Bus: Built-In
      Total Number of Cores: 24
      Vendor: Apple (0x106b)
      Metal Support: Metal 3
      Displays:
        Q24i-10:
          Resolution: 1920 x 1080 (1080p FHD - Full High Definition)
          UI Looks like: 1920 x 1080 @ 60.00Hz
          Main Display: Yes
          Mirror: Off
          Online: Yes
          Rotation: Supported
        ASUS PA279:
          Resolution: 6016 x 3384
          UI Looks like: 3008 x 1692 @ 60.00Hz
          Mirror: Off
          Online: Yes
          Rotation: Supported


Installed Packages:
    alabaster: 0.7.16
    appdirs: 1.4.4
    appnope: 0.1.4
    asttokens: 2.4.1
    Babel: 2.15.0
    beautifulsoup4: 4.12.3
    blockdiag: 3.0.0
    blosc2: 2.0.0
    build: 1.2.1
    certifi: 2023.11.17
    cftime: 1.6.4
    charset-normalizer: 3.3.2
    ChimeraX-AddCharge: 1.5.17
    ChimeraX-AddH: 2.2.6
    ChimeraX-AlignmentAlgorithms: 2.0.2
    ChimeraX-AlignmentHdrs: 3.5
    ChimeraX-AlignmentMatrices: 2.1
    ChimeraX-Alignments: 2.12.7
    ChimeraX-AlphaFold: 1.0
    ChimeraX-AltlocExplorer: 1.1.1
    ChimeraX-AmberInfo: 1.0
    ChimeraX-Arrays: 1.1
    ChimeraX-Atomic: 1.57.1
    ChimeraX-AtomicLibrary: 14.0.6
    ChimeraX-AtomSearch: 2.0.1
    ChimeraX-AxesPlanes: 2.4
    ChimeraX-BasicActions: 1.1.2
    ChimeraX-BILD: 1.0
    ChimeraX-BlastProtein: 2.4.6
    ChimeraX-BondRot: 2.0.4
    ChimeraX-BugReporter: 1.0.1
    ChimeraX-BuildStructure: 2.12.1
    ChimeraX-Bumps: 1.0
    ChimeraX-BundleBuilder: 1.2.7
    ChimeraX-ButtonPanel: 1.0.1
    ChimeraX-CageBuilder: 1.0.1
    ChimeraX-CellPack: 1.0
    ChimeraX-Centroids: 1.4
    ChimeraX-ChangeChains: 1.1
    ChimeraX-CheckWaters: 1.4
    ChimeraX-ChemGroup: 2.0.1
    ChimeraX-Clashes: 2.2.4
    ChimeraX-ColorActions: 1.0.5
    ChimeraX-ColorGlobe: 1.0
    ChimeraX-ColorKey: 1.5.6
    ChimeraX-CommandLine: 1.2.5
    ChimeraX-ConnectStructure: 2.0.1
    ChimeraX-Contacts: 1.0.1
    ChimeraX-Core: 1.8
    ChimeraX-CoreFormats: 1.2
    ChimeraX-coulombic: 1.4.3
    ChimeraX-Crosslinks: 1.0
    ChimeraX-Crystal: 1.0
    ChimeraX-CrystalContacts: 1.0.1
    ChimeraX-DataFormats: 1.2.3
    ChimeraX-Dicom: 1.2.4
    ChimeraX-DiffPlot: 1.0
    ChimeraX-DistMonitor: 1.4.2
    ChimeraX-DockPrep: 1.1.3
    ChimeraX-Dssp: 2.0
    ChimeraX-EMDB-SFF: 1.0
    ChimeraX-ESMFold: 1.0
    ChimeraX-FileHistory: 1.0.1
    ChimeraX-FunctionKey: 1.0.1
    ChimeraX-Geometry: 1.3
    ChimeraX-gltf: 1.0
    ChimeraX-Graphics: 1.1.1
    ChimeraX-Hbonds: 2.4
    ChimeraX-Help: 1.2.2
    ChimeraX-HKCage: 1.3
    ChimeraX-IHM: 1.1
    ChimeraX-ImageFormats: 1.2
    ChimeraX-IMOD: 1.0
    ChimeraX-IO: 1.0.1
    ChimeraX-ItemsInspection: 1.0.1
    ChimeraX-IUPAC: 1.0
    ChimeraX-Label: 1.1.10
    ChimeraX-ListInfo: 1.2.2
    ChimeraX-Log: 1.1.6
    ChimeraX-LookingGlass: 1.1
    ChimeraX-Maestro: 1.9.1
    ChimeraX-Map: 1.2
    ChimeraX-MapData: 2.0
    ChimeraX-MapEraser: 1.0.1
    ChimeraX-MapFilter: 2.0.1
    ChimeraX-MapFit: 2.0
    ChimeraX-MapSeries: 2.1.1
    ChimeraX-Markers: 1.0.1
    ChimeraX-Mask: 1.0.2
    ChimeraX-MatchMaker: 2.1.3
    ChimeraX-MCopy: 1.0
    ChimeraX-MDcrds: 2.7.1
    ChimeraX-MedicalToolbar: 1.0.3
    ChimeraX-Meeting: 1.0.1
    ChimeraX-MLP: 1.1.1
    ChimeraX-mmCIF: 2.14.1
    ChimeraX-MMTF: 2.2
    ChimeraX-Modeller: 1.5.17
    ChimeraX-ModelPanel: 1.5
    ChimeraX-ModelSeries: 1.0.1
    ChimeraX-Mol2: 2.0.3
    ChimeraX-Mole: 1.0
    ChimeraX-Morph: 1.0.2
    ChimeraX-MouseModes: 1.2
    ChimeraX-Movie: 1.0
    ChimeraX-Neuron: 1.0
    ChimeraX-Nifti: 1.2
    ChimeraX-NMRSTAR: 1.0.2
    ChimeraX-NRRD: 1.2
    ChimeraX-Nucleotides: 2.0.3
    ChimeraX-OpenCommand: 1.13.5
    ChimeraX-PDB: 2.7.5
    ChimeraX-PDBBio: 1.0.1
    ChimeraX-PDBLibrary: 1.0.4
    ChimeraX-PDBMatrices: 1.0
    ChimeraX-PickBlobs: 1.0.1
    ChimeraX-Positions: 1.0
    ChimeraX-PresetMgr: 1.1.1
    ChimeraX-PubChem: 2.2
    ChimeraX-ReadPbonds: 1.0.1
    ChimeraX-Registration: 1.1.2
    ChimeraX-RemoteControl: 1.0
    ChimeraX-RenderByAttr: 1.4.1
    ChimeraX-RenumberResidues: 1.1
    ChimeraX-ResidueFit: 1.0.1
    ChimeraX-RestServer: 1.2
    ChimeraX-RNALayout: 1.0
    ChimeraX-RotamerLibMgr: 4.0
    ChimeraX-RotamerLibsDunbrack: 2.0
    ChimeraX-RotamerLibsDynameomics: 2.0
    ChimeraX-RotamerLibsRichardson: 2.0
    ChimeraX-SaveCommand: 1.5.1
    ChimeraX-SchemeMgr: 1.0
    ChimeraX-SDF: 2.0.2
    ChimeraX-Segger: 1.0
    ChimeraX-Segment: 1.0.1
    ChimeraX-Segmentations: 3.0.15
    ChimeraX-SelInspector: 1.0
    ChimeraX-SeqView: 2.11.2
    ChimeraX-Shape: 1.0.1
    ChimeraX-Shell: 1.0.1
    ChimeraX-Shortcuts: 1.1.1
    ChimeraX-ShowSequences: 1.0.3
    ChimeraX-SideView: 1.0.1
    ChimeraX-Smiles: 2.1.2
    ChimeraX-SmoothLines: 1.0
    ChimeraX-SpaceNavigator: 1.0
    ChimeraX-StdCommands: 1.16.5
    ChimeraX-STL: 1.0.1
    ChimeraX-Storm: 1.0
    ChimeraX-StructMeasure: 1.2.1
    ChimeraX-Struts: 1.0.1
    ChimeraX-Surface: 1.0.1
    ChimeraX-SwapAA: 2.0.1
    ChimeraX-SwapRes: 2.5
    ChimeraX-TapeMeasure: 1.0
    ChimeraX-TaskManager: 1.0
    ChimeraX-Test: 1.0
    ChimeraX-Toolbar: 1.1.2
    ChimeraX-ToolshedUtils: 1.2.4
    ChimeraX-Topography: 1.0
    ChimeraX-ToQuest: 1.0
    ChimeraX-Tug: 1.0.1
    ChimeraX-UI: 1.39.1
    ChimeraX-uniprot: 2.3
    ChimeraX-UnitCell: 1.0.1
    ChimeraX-ViewDockX: 1.4.3
    ChimeraX-VIPERdb: 1.0
    ChimeraX-Vive: 1.1
    ChimeraX-VolumeMenu: 1.0.1
    ChimeraX-vrml: 1.0
    ChimeraX-VTK: 1.0
    ChimeraX-WavefrontOBJ: 1.0
    ChimeraX-WebCam: 1.0.2
    ChimeraX-WebServices: 1.1.4
    ChimeraX-Zone: 1.0.1
    colorama: 0.4.6
    comm: 0.2.2
    contourpy: 1.2.1
    cxservices: 1.2.2
    cycler: 0.12.1
    Cython: 3.0.10
    debugpy: 1.8.1
    decorator: 5.1.1
    docutils: 0.20.1
    executing: 2.0.1
    filelock: 3.13.4
    fonttools: 4.53.0
    funcparserlib: 2.0.0a0
    glfw: 2.7.0
    grako: 3.16.5
    h5py: 3.11.0
    html2text: 2024.2.26
    idna: 3.7
    ihm: 1.0
    imagecodecs: 2024.1.1
    imagesize: 1.4.1
    ipykernel: 6.29.2
    ipython: 8.21.0
    ipywidgets: 8.1.3
    jedi: 0.19.1
    jinja2: 3.1.4
    jupyter-client: 8.6.0
    jupyter-core: 5.7.2
    jupyterlab-widgets: 3.0.11
    kiwisolver: 1.4.5
    line-profiler: 4.1.2
    lxml: 5.2.1
    lz4: 4.3.3
    MarkupSafe: 2.1.5
    matplotlib: 3.8.4
    matplotlib-inline: 0.1.7
    msgpack: 1.0.8
    nest-asyncio: 1.6.0
    netCDF4: 1.6.5
    networkx: 3.3
    nibabel: 5.2.0
    nptyping: 2.5.0
    numexpr: 2.10.0
    numpy: 1.26.4
    openvr: 1.26.701
    packaging: 23.2
    ParmEd: 4.2.2
    parso: 0.8.4
    pep517: 0.13.1
    pexpect: 4.9.0
    pillow: 10.3.0
    pip: 24.0
    pkginfo: 1.10.0
    platformdirs: 4.2.2
    prompt-toolkit: 3.0.47
    psutil: 5.9.8
    ptyprocess: 0.7.0
    pure-eval: 0.2.2
    py-cpuinfo: 9.0.0
    pycollada: 0.8
    pydicom: 2.4.4
    pygments: 2.17.2
    pynmrstar: 3.3.4
    pynrrd: 1.0.0
    PyOpenGL: 3.1.7
    PyOpenGL-accelerate: 3.1.7
    pyopenxr: 1.0.3401
    pyparsing: 3.1.2
    pyproject-hooks: 1.1.0
    PyQt6-commercial: 6.6.1
    PyQt6-Qt6: 6.6.3
    PyQt6-sip: 13.6.0
    PyQt6-WebEngine-commercial: 6.6.0
    PyQt6-WebEngine-Qt6: 6.6.3
    python-dateutil: 2.9.0.post0
    pytz: 2024.1
    pyzmq: 26.0.3
    qtconsole: 5.5.1
    QtPy: 2.4.1
    RandomWords: 0.4.0
    requests: 2.31.0
    scipy: 1.13.0
    setuptools: 69.5.1
    setuptools-scm: 8.0.4
    sfftk-rw: 0.8.1
    six: 1.16.0
    snowballstemmer: 2.2.0
    sortedcontainers: 2.4.0
    soupsieve: 2.5
    sphinx: 7.2.6
    sphinx-autodoc-typehints: 2.0.1
    sphinxcontrib-applehelp: 1.0.8
    sphinxcontrib-blockdiag: 3.0.0
    sphinxcontrib-devhelp: 1.0.6
    sphinxcontrib-htmlhelp: 2.0.5
    sphinxcontrib-jsmath: 1.0.1
    sphinxcontrib-qthelp: 1.0.7
    sphinxcontrib-serializinghtml: 1.1.10
    stack-data: 0.6.3
    superqt: 0.6.3
    tables: 3.8.0
    tcia-utils: 1.5.1
    tifffile: 2024.1.30
    tinyarray: 1.2.4
    tornado: 6.4.1
    traitlets: 5.14.2
    typing-extensions: 4.12.2
    tzdata: 2024.1
    urllib3: 2.2.1
    wcwidth: 0.2.13
    webcolors: 1.13
    wheel: 0.43.0
    wheel-filename: 1.4.1
    widgetsnbextension: 4.0.11
}}}
"	defect	closed	normal		Window Toolkit		can't reproduce		Tom Goddard				all	ChimeraX