id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc	blockedby	blocking	notify_on_close	platform	project
1739	Make pseudobonds end on cartoons	olibclarke@…	Conrad Huang	"{{{
The following bug report has been submitted:
Platform:        Darwin-18.2.0-x86_64-i386-64bit
ChimeraX Version: 0.9 (2019-02-26)
Description
Hi,

By default, missing segments are shown as dashed cylinders. However, if the molecule is shown in cartoon  representation, these missing segments  do not connect to the ends of the missing region (see screenshot), preesumably because they are positioned based on the actual coordinates, rather than the rendered location of the ribbon/coil end. It would look nicer if these segments matched the cartoon ends.

Cheers
Oli

Log:
> camera ortho

> lighting soft

> set bgColor white

> lighting depthCueColor white

> cofr centerOfView

UCSF ChimeraX version: 0.9 (2019-02-26)  
© 2016-2019 Regents of the University of California. All rights reserved.  
How to cite UCSF ChimeraX  

> open test.cif

Summary of feedback from opening test.cif  
---  
warnings | skipping chem_comp category: Missing column 'type' near line 125  
Unknown polymer entity '?' near line 169  
Missing entity_poly_seq table. Inferred polymer connectivity.  
skipping chem_comp category: Missing column 'type' near line 11407  
  
Chain information for test.cif #1  
---  
Chain | Description  
AP1 | No description available  
CP1 | No description available  
  

> rainbow




OpenGL version: 4.1 ATI-2.4.10
OpenGL renderer: AMD Radeon Pro 580 OpenGL Engine
OpenGL vendor: ATI Technologies Inc.
File attachment: Screen Shot 2019-02-28 at 4.56.53 PM.png

}}}

[attachment:""Screen Shot 2019-02-28 at 4.56.53 PM.png""]
"	defect	closed	normal		Depiction		duplicate						all	ChimeraX