id summary reporter owner description type status priority milestone component version resolution keywords cc blockedby blocking notify_on_close platform project 17312 Crash on Mac waking from sleep chimerax-bug-report@… Tom Goddard "{{{ The following bug report has been submitted: Platform: macOS-15.3.2-arm64-arm-64bit ChimeraX Version: 1.8 (2024-06-10 23:15:52 UTC) Description Last time you used ChimeraX it crashed. Please describe steps that led to the crash here. Fatal Python error: Segmentation fault Current thread 0x00000002084d8840 (most recent call first): File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/ui/gui.py"", line 315 in event_loop File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1003 in init File ""/Applications/ChimeraX-1.8.app/Contents/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/chimerax/core/__main__.py"", line 1166 in File """", line 88 in _run_code File """", line 198 in _run_module_as_main Extension modules: chimerax.arrays._arrays, numpy.core._multiarray_umath, numpy.core._multiarray_tests, numpy.linalg._umath_linalg, numpy.fft._pocketfft_internal, numpy.random._common, numpy.random.bit_generator, numpy.random._bounded_integers, numpy.random._mt19937, numpy.random.mtrand, numpy.random._philox, numpy.random._pcg64, numpy.random._sfc64, numpy.random._generator, chimerax.geometry._geometry, PyQt6.QtCore, PyQt6.QtGui, PyQt6.QtWidgets, PyQt6.QtNetwork, PyQt6.QtPrintSupport, PyQt6.QtWebChannel, PyQt6.QtWebEngineCore, PyQt6.QtWebEngineWidgets, chimerax.atomic_lib._load_libs, tinyarray, chimerax.atomic.cymol, chimerax.atomic.cytmpl, chimerax.map._map, charset_normalizer.md, PIL._imaging, matplotlib._c_internal_utils, matplotlib._path, kiwisolver._cext, matplotlib._image, chimerax.pdb_lib._load_libs, chimerax.surface._surface, OpenGL_accelerate.errorchecker, OpenGL_accelerate.wrapper, OpenGL_accelerate.formathandler, OpenGL_accelerate.arraydatatype, OpenGL_accelerate.latebind, OpenGL_accelerate.vbo, chimerax.core._mac_util, OpenGL_accelerate.numpy_formathandler, OpenGL_accelerate.nones_formathandler, lz4._version, lz4.frame._frame, msgpack._cmsgpack, chimerax.core._serialize, PyQt6.QtOpenGL, PyQt6.QtOpenGLWidgets, chimerax.atomic._ribbons, chimerax.graphics._graphics, chimerax.mmcif._mmcif, chimerax.mmcif.mmcif, chimerax.pdb._pdbio, psutil._psutil_osx, psutil._psutil_posix, lxml._elementpath, lxml.etree, PIL._imagingmath (total: 61) {""app_name"":""ChimeraX"",""timestamp"":""2025-04-07 08:46:32.00 -0500"",""app_version"":""1.8.0"",""slice_uuid"":""17982d98-65bc-3327-8526-577ec996453c"",""build_version"":""1.8.0.0"",""platform"":1,""bundleID"":""edu.ucsf.cgl.ChimeraX"",""share_with_app_devs"":0,""is_first_party"":0,""bug_type"":""309"",""os_version"":""macOS 15.3.2 (24D81)"",""roots_installed"":0,""name"":""ChimeraX"",""incident_id"":""2BAF2AD0-1A91-4C0A-9BF2-7B135D30ACB0""} { ""uptime"" : 680000, ""procRole"" : ""Foreground"", ""version"" : 2, ""userID"" : 502, ""deployVersion"" : 210, ""modelCode"" : ""Mac14,7"", ""coalitionID"" : 4012, ""osVersion"" : { ""train"" : ""macOS 15.3.2"", ""build"" : ""24D81"", ""releaseType"" : ""User"" }, ""captureTime"" : ""2025-04-07 08:46:27.4151 -0500"", ""codeSigningMonitor"" : 1, ""incident"" : ""2BAF2AD0-1A91-4C0A-9BF2-7B135D30ACB0"", ""pid"" : 65518, ""translated"" : false, ""cpuType"" : ""ARM-64"", ""roots_installed"" : 0, ""bug_type"" : ""309"", ""procLaunch"" : ""2025-04-05 12:31:12.7862 -0500"", ""procStartAbsTime"" : 15728554660352, ""procExitAbsTime"" : 16430490487582, ""procName"" : ""ChimeraX"", ""procPath"" : ""\/Applications\/ChimeraX-1.8.app\/Contents\/MacOS\/ChimeraX"", ""bundleInfo"" : {""CFBundleShortVersionString"":""1.8.0"",""CFBundleVersion"":""1.8.0.0"",""CFBundleIdentifier"":""edu.ucsf.cgl.ChimeraX""}, ""storeInfo"" : {""deviceIdentifierForVendor"":""039446C8-56F1-54A1-9531-85BD2E8F600D"",""thirdParty"":true}, ""parentProc"" : ""launchd"", ""parentPid"" : 1, ""coalitionName"" : ""edu.ucsf.cgl.ChimeraX"", ""crashReporterKey"" : ""3C03AB57-DF91-6538-731F-87145E7E925C"", ""codeSigningID"" : ""edu.ucsf.cgl.ChimeraX"", ""codeSigningTeamID"" : ""LWV8X224YF"", ""codeSigningFlags"" : 570491649, ""codeSigningValidationCategory"" : 6, ""codeSigningTrustLevel"" : 4294967295, ""instructionByteStream"" : {""beforePC"":""fyMD1f17v6n9AwCRcuD\/l78DAJH9e8Go\/w9f1sADX9YQKYDSARAA1A=="",""atPC"":""AwEAVH8jA9X9e7+p\/QMAkWfg\/5e\/AwCR\/XvBqP8PX9bAA1\/WcAqA0g==""}, ""bootSessionUUID"" : ""A7275150-C5A5-48E1-A7F7-1369D27D4EB2"", ""wakeTime"" : 23, ""sleepWakeUUID"" : ""946F6B3D-8ECC-402E-A984-2F1361197C94"", ""sip"" : ""enabled"", ""vmRegionInfo"" : ""0x76530012f7b9 is not in any region. 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All rights reserved. > open ""/Users/kompa012/Desktop/NiP N protein article/Figures/Model > mechanism.cxs"" Opened cryosparc_P78_J379_map_sharp.mrc as #5, grid size 540,540,540, pixel 0.885, shown at level 0.07, step 1, values float32 Opened cryosparc_P78_J377_009_volume_map.mrc as #4, grid size 540,540,540, pixel 0.885, shown at level 0.045, step 1, values float32 Opened cryosparc_P78_J379_map_sharp_one.mrc as #12, grid size 540,540,540, pixel 0.885, shown at level 0.07, step 1, values float32 Opened cryosparc_P78_J400_008_volume_map_sharp.mrc as #21, grid size 540,540,540, pixel 0.885, shown at level 0.045, step 1, values float32 Opened cryosparc_P78_J368_map_sharp_zflip.mrc as #22, grid size 360,360,360, pixel 0.885, shown at level 0.005, step 1, values float32 Opened cryosparc_P78_J378_map_sharp.mrc as #23, grid size 540,540,540, pixel 1.18, shown at level 0.005, step 1, values float32 Opened cryosparc_P78_J365_009_volume_map_zflip.mrc as #24, grid size 360,360,360, pixel 0.885, shown at level 0.045, step 1, values float32 Opened cryosparc_P78_J376_007_volume_map.mrc as #25, grid size 540,540,540, pixel 1.18, shown at level 0.06, step 1, values float32 Log from Fri Apr 4 01:16:01 2025UCSF ChimeraX version: 1.8 (2024-06-10) © 2016-2024 Regents of the University of California. All rights reserved. > open ""/Users/kompa012/Desktop/NiP N protein article/Figures/prot > comparison1.cxs"" Opened cryosparc_P78_J379_map_sharp.mrc as #5, grid size 540,540,540, pixel 0.885, shown at level 0.07, step 1, values float32 Opened cryosparc_P78_J377_009_volume_map.mrc as #4, grid size 540,540,540, pixel 0.885, shown at level 0.045, step 1, values float32 Opened cryosparc_P78_J379_map_sharp_one.mrc as #12, grid size 540,540,540, pixel 0.885, shown at level 0.07, step 1, values float32 Opened cryosparc_P78_J400_008_volume_map_sharp.mrc as #21, grid size 540,540,540, pixel 0.885, shown at level 0.045, step 1, values float32 Opened cryosparc_P78_J368_map_sharp_zflip.mrc as #22, grid size 360,360,360, pixel 0.885, shown at level 0.005, step 1, values float32 Opened cryosparc_P78_J378_map_sharp.mrc as #23, grid size 540,540,540, pixel 1.18, shown at level 0.005, step 1, values float32 Opened cryosparc_P78_J365_009_volume_map_zflip.mrc as #24, grid size 360,360,360, pixel 0.885, shown at level 0.045, step 1, values float32 Opened cryosparc_P78_J376_007_volume_map.mrc as #25, grid size 540,540,540, pixel 1.18, shown at level 0.06, step 1, values float32 Log from Mon Mar 31 09:45:10 2025UCSF ChimeraX version: 1.8 (2024-06-10) © 2016-2024 Regents of the University of California. All rights reserved. > set bgColor transparent Log from Wed Mar 26 17:06:10 2025UCSF ChimeraX version: 1.8 (2024-06-10) © 2016-2024 Regents of the University of California. All rights reserved. > open ""/Users/kompa012/Desktop/NiP N protein article/Figures/prot > comparison.cxs"" Opened cryosparc_P78_J379_map_sharp.mrc as #5, grid size 540,540,540, pixel 0.885, shown at level 0.07, step 1, values float32 Opened cryosparc_P78_J377_009_volume_map.mrc as #4, grid size 540,540,540, pixel 0.885, shown at level 0.044, step 1, values float32 Opened cryosparc_P78_J379_map_sharp_one.mrc as #12, grid size 540,540,540, pixel 0.885, shown at level 0.07, step 1, values float32 Log from Mon Mar 24 20:26:22 2025UCSF ChimeraX version: 1.8 (2024-06-10) © 2016-2024 Regents of the University of California. All rights reserved. > open ""/Users/kompa012/Desktop/NiP N protein article/Figures/dimer close > aup.cxs"" format session Opened cryosparc_P78_J379_map_sharp.mrc as #5, grid size 540,540,540, pixel 0.885, shown at level 0.07, step 1, values float32 Opened cryosparc_P78_J377_009_volume_map.mrc as #4, grid size 540,540,540, pixel 0.885, shown at level 0.044, step 1, values float32 Opened cryosparc_P78_J379_map_sharp_one.mrc as #12, grid size 540,540,540, pixel 0.885, shown at level 0.07, step 1, values float32 Log from Fri Mar 21 14:45:12 2025UCSF ChimeraX version: 1.8 (2024-06-10) © 2016-2024 Regents of the University of California. All rights reserved. > set bgColor transparent Log from Tue Mar 18 10:07:50 2025 Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.8 (2024-06-10) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX > open ""/Users/kompa012/Desktop/NiP N protein article/7nt5_J377_intactmodel- > coot-0_real_space_refined_030.pdb"" Chain information for 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1 --- Chain | Description D E F G H I J K L M N O P Q | No description available Z | No description available > open ""/Users/kompa012/Desktop/NiP N protein article/pdb_extract_3032647.cif"" Summary of feedback from opening /Users/kompa012/Desktop/NiP N protein article/pdb_extract_3032647.cif --- warning | Missing or incomplete sequence information. Inferred polymer connectivity. Chain information for pdb_extract_3032647.cif #2 --- Chain | Description D E F G H I J K L M N O P Q | No description available Z | No description available > hide #1 models > show #1 models > hide #2 models > show #2 models > open 7nt5 fromDatabase pdb format mmcif Summary of feedback from opening 7nt5 fetched from pdb --- note | Fetching compressed mmCIF 7nt5 from http://files.rcsb.org/download/7nt5.cif 7nt5 title: CryoEM structure of the Nipah virus nucleocapsid single helical turn assembly [more info...] Chain information for 7nt5 #3 --- Chain | Description | UniProt A B C D E F G H I J K L M | Nucleoprotein | NCAP_NIPAV 1-532 N | RNA (78-MER) | > open ""/Users/kompa012/Desktop/NiP N protein article/NiV N > protein/cryosparc_P78_J377_009_volume_map.mrc"" Opened cryosparc_P78_J377_009_volume_map.mrc as #4, grid size 540,540,540, pixel 0.885, shown at level 0.0369, step 4, values float32 > volume #4 step 1 > hide #!3 models > ui tool show ""Hide Dust"" > surface dust #4 size 5.31 > select add #1 44996 atoms, 45905 bonds, 5656 residues, 1 model selected > style sel stick Changed 44996 atom styles > hide #2 models > select add #4 44996 atoms, 45905 bonds, 5656 residues, 3 models selected > select subtract #1 2 models selected > transparency #4.1 70 > volume #4 level 0.03 > volume #4 level 0.02 > volume #4 level 0.015 > volume #4 level 0.05 > ui mousemode right select > select clear > volume #4 level 0.06 > select add #1 44996 atoms, 45905 bonds, 5656 residues, 1 model selected > show sel surfaces > select subtract #1 15 models selected > select add #1.15 1680 atoms, 84 residues, 1 model selected > hide sel surfaces > show sel cartoons > select clear > select add #1 44996 atoms, 45905 bonds, 5656 residues, 1 model selected > color zone #4 near sel & #1 distance 5.31 > select clear > hide #!1 models > open ""/Users/kompa012/Desktop/NiP N protein article/NiV N > protein/cryosparc_P78_J379_map_sharp.mrc"" Opened cryosparc_P78_J379_map_sharp.mrc as #5, grid size 540,540,540, pixel 0.885, shown at level 0.000704, step 4, values float32 > volume #5 step 1 > volume #5 level 0.02408 > surface dust #5 size 5.31 > volume #5 level 0.06 > volume #4 level 0.025 > show #!5 models > hide #!4 models > show #!1 models > select add #1 44996 atoms, 45905 bonds, 5656 residues, 1 model selected > hide sel surfaces > show sel atoms > select clear > select add #5 2 models selected > transparency #5.1 80 > select clear > volume #5 level 0.04 > transparency #1,5 60 > hide #!5 models > select add #1 44996 atoms, 45905 bonds, 5656 residues, 1 model selected > select subtract #1.10 41902 atoms, 42758 bonds, 5258 residues, 16 models selected > select subtract #1.11 38808 atoms, 39611 bonds, 4860 residues, 15 models selected > select subtract #1.15 37128 atoms, 37764 bonds, 4776 residues, 14 models selected > hide sel atoms > select subtract #1.9 34034 atoms, 34617 bonds, 4378 residues, 13 models selected > select add #1.9 37128 atoms, 34617 bonds, 4776 residues, 12 models selected > select add #1 44996 atoms, 45905 bonds, 5656 residues, 13 models selected > select subtract #1 15 models selected > select add #1.9 3094 atoms, 398 residues, 1 model selected > show sel atoms > select clear Cell requested for row 3 is out of bounds for table with 20 rows! Resizing table model. > ui tool show Contacts > select add #1.15 1680 atoms, 84 residues, 1 model selected > select add #1.10 4774 atoms, 482 residues, 2 models selected > select add #1.11 7868 atoms, 880 residues, 3 models selected > select add #1.9 10962 atoms, 1278 residues, 4 models selected > contacts sel restrict both ignoreHiddenModels true log true Allowed overlap: -0.4 H-bond overlap reduction: 0.4 Ignore contacts between atoms separated by 4 bonds or less Detect intra-residue contacts: False Detect intra-molecule contacts: True 5727 contacts atom1 atom2 overlap distance 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L PRO 280 CD 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 374 CD1 0.708 3.052 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L PRO 280 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 374 CD1 0.578 3.182 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ALA 269 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ALA 265 O 0.504 2.796 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 374 CG1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ASN 285 ND2 0.444 3.076 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L PRO 280 CD 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 374 CG2 0.435 3.325 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ARG 192 NH1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 66 P 0.403 3.337 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ALA 269 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ALA 265 O 0.401 2.899 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ARG 192 NH1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 60 P 0.397 3.343 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ALA 269 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ALA 265 O 0.363 2.937 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ARG 60 NH2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ASP 57 CG 0.325 3.195 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 374 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L PRO 280 CG 0.323 3.437 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ARG 36 NH1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLU 124 CD 0.280 3.240 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L PRO 280 CD 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 374 CB 0.265 3.495 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ARG 36 NH1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N GLU 124 CD 0.261 3.259 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ASP 137 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LYS 133 O 0.255 3.045 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ASP 137 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LYS 133 O 0.238 3.062 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ASP 137 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L LYS 133 O 0.236 3.064 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ARG 36 NH1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLU 124 CD 0.234 3.286 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L LEU 284 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLN 288 NE2 0.232 2.428 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LEU 284 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLN 288 NE2 0.228 2.432 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ASN 349 ND2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 51 N3 0.228 3.052 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLU 286 OE1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L TYR 359 OH 0.222 2.258 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L TYR 359 OH 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLU 286 CD 0.220 3.120 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLU 50 OE1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ARG 154 NH1 0.217 2.443 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N PRO 280 CD 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 374 CG2 0.216 3.544 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N TRP 173 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N GLU 169 O 0.216 2.964 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LYS 34 CA 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N GLU 98 O 0.214 3.086 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ARG 192 NH1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 54 P 0.213 3.527 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M TRP 173 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLU 169 O 0.211 2.969 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLN 376 NE2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ARG 278 CG 0.210 3.310 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ASN 349 ND2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 63 N3 0.208 3.072 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ASP 103 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ALA 41 CB 0.205 3.555 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ASP 290 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M PHE 287 O 0.204 3.096 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 101 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ARG 89 NH1 0.201 3.319 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N TYR 151 OH 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ASP 57 CG 0.198 3.142 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 101 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ARG 89 NH1 0.197 3.323 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L TRP 173 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLU 169 O 0.191 2.989 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N GLU 50 OE1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ARG 154 NH1 0.191 2.469 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ASN 285 ND2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L TYR 279 CD1 0.191 3.209 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M PRO 328 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M TRP 331 CB 0.189 3.111 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ASP 157 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M THR 160 OG1 0.187 3.153 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M PRO 280 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 374 CD1 0.187 3.573 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLN 15 NE2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L PHE 268 CE1 0.186 3.214 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ASP 3 N 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ARG 381 CD 0.185 3.335 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M SER 332 OG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LEU 329 O 0.179 2.301 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N GLN 15 NE2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M PHE 268 CE1 0.178 3.222 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLU 276 OE1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ASN 292 ND2 0.177 2.483 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N GLU 233 OE1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LYS 229 O 0.176 2.664 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LEU 31 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ARG 48 NH1 0.176 3.344 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 318 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ARG 20 NH2 0.176 3.344 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ARG 12 NH1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLN 15 NE2 0.174 3.106 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N GLU 315 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLU 250 CD 0.174 3.126 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 101 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ARG 89 NH1 0.174 3.346 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ARG 60 NH1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M PRO 144 CD 0.173 3.347 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLU 50 OE1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ARG 154 NH1 0.173 2.487 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L VAL 227 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L MET 231 CG 0.172 3.128 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LEU 329 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N SER 332 OG 0.171 2.309 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L SER 344 OG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ASP 342 CG 0.170 3.170 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLY 373 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLN 388 CG 0.170 3.130 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ASP 157 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N THR 160 OG1 0.169 3.171 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L PHE 11 CE2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLN 15 NE2 0.166 3.234 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N VAL 227 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N MET 231 CG 0.165 3.135 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M PHE 11 CE2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLN 15 NE2 0.165 3.235 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M VAL 227 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M MET 231 CG 0.162 3.138 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N PHE 11 CE2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N GLN 15 NE2 0.160 3.240 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N SER 344 OG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ASP 342 CG 0.160 3.180 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 374 CG2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ASN 285 ND2 0.159 3.361 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LEU 31 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ARG 48 NH1 0.159 3.361 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LEU 314 CD2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LYS 229 CG 0.159 3.601 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLU 233 OE2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ARG 307 NH2 0.158 2.502 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ASP 57 OD2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N TYR 151 OH 0.158 2.322 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N PRO 144 CD 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ARG 60 NH1 0.155 3.365 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ASP 290 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L PHE 287 O 0.155 3.145 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N GLN 376 NE2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ARG 278 CG 0.155 3.365 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 168 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L THR 52 CG2 0.153 3.607 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ASP 103 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ALA 41 CB 0.153 3.607 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L LEU 314 CD2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L LYS 229 CG 0.153 3.607 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ARG 368 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N GLN 364 O 0.152 3.148 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ARG 368 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLN 364 O 0.150 3.150 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L SER 332 OG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L LEU 329 O 0.150 2.330 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ARG 48 NH1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LEU 31 CD2 0.149 3.371 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLU 315 OE2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ARG 228 NH1 0.149 2.511 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ASP 290 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N PHE 287 O 0.149 3.151 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 38 C5' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 37 C2' 0.149 3.611 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 168 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M THR 52 CG2 0.148 3.612 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L PRO 328 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L TRP 331 CB 0.147 3.153 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ALA 283 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L PRO 280 O 0.147 3.153 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LYS 229 CD 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ASP 94 CG 0.143 3.617 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LEU 314 CD2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LYS 229 CG 0.143 3.617 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ARG 368 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLN 364 O 0.143 3.157 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N MET 114 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N MET 107 CA 0.141 3.619 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L LEU 392 CD2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LEU 284 CD2 0.141 3.619 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 44 C5' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 43 C2' 0.141 3.619 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LEU 128 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 131 CG2 0.140 3.160 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 72 C5' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 71 C2' 0.139 3.621 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M SER 139 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ARG 60 NH1 0.138 3.382 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ARG 60 NH1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L PRO 144 CD 0.137 3.383 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 131 CG1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLY 127 O 0.133 3.167 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L SER 139 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ARG 60 NH1 0.133 3.387 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ASP 157 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L THR 160 OG1 0.133 3.207 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 172 CG1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 168 O 0.132 3.168 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L TYR 151 OH 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ASP 57 CG 0.131 3.209 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M TYR 151 OH 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ASP 57 CG 0.129 3.211 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 172 CG1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 168 O 0.129 3.171 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ASP 96 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLY 246 CA 0.128 3.632 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ARG 302 NH2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N TYR 14 CB 0.127 3.393 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 49 C2' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 50 C5' 0.127 3.633 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ASN 285 ND2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M TYR 279 CD1 0.126 3.274 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 172 CG1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 168 O 0.125 3.175 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 61 C2' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 62 C5' 0.125 3.635 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M SER 90 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ALA 86 O 0.125 3.175 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 13 C2' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 14 C6 0.125 3.515 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLN 288 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L LEU 291 CB 0.124 3.176 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 32 C5' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 31 C2' 0.124 3.636 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 168 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N THR 52 CG2 0.124 3.636 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N SER 90 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ALA 86 O 0.123 3.177 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N PRO 328 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N TRP 331 CB 0.123 3.177 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N MET 231 CE 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 77 CG1 0.122 3.638 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 41 C5' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 40 C2' 0.121 3.639 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 26 C5' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 25 C2' 0.120 3.640 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 55 C2' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 56 C5' 0.120 3.640 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ARG 136 NH2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N TYR 151 OH 0.119 2.581 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N MET 107 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N SER 106 O 0.119 3.181 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L MET 231 CE 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 77 CG1 0.118 3.642 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ARG 48 NH1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LEU 31 CD2 0.118 3.402 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 131 CG2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M SER 61 CB 0.118 3.642 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ASP 96 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLY 246 CA 0.116 3.644 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ASN 285 ND2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M TYR 279 CE1 0.116 3.284 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N GLN 288 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LEU 291 CB 0.115 3.185 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 252 CG1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ALA 248 O 0.115 3.185 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ASP 290 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M THR 293 CB 0.115 3.185 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLU 233 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LYS 229 O 0.114 3.186 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLY 105 CA 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ARG 116 NH2 0.114 3.406 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M SER 344 OG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ASP 342 CG 0.113 3.227 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N SER 139 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ARG 60 NH1 0.113 3.407 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N GLY 105 CA 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ARG 116 NH2 0.112 3.408 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLN 171 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 174 CG1 0.112 3.188 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 24 C5' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 23 C2' 0.111 3.649 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ALA 248 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 252 CG1 0.111 3.189 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ARG 193 NH1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ARG 192 CB 0.111 3.409 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M MET 114 CA 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ASN 109 ND2 0.111 3.409 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L TRP 173 CH2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L MET 231 CB 0.108 3.532 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ALA 393 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M VAL 389 O 0.107 3.193 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 131 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ALA 64 CB 0.107 3.653 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L TRP 331 CA 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L THR 270 CG2 0.107 3.653 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ARG 20 NH2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 318 CG1 0.107 3.413 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLU 98 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L LYS 34 CA 0.106 3.194 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L SER 366 OG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLY 363 CA 0.106 3.234 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 58 C2' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 59 C5' 0.106 3.654 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M PRO 280 CD 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 374 CG1 0.106 3.654 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLY 105 CA 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ARG 116 NH2 0.106 3.414 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ARG 228 CD 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N VAL 180 CG1 0.105 3.655 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M TRP 213 CZ3 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 172 CD1 0.105 3.535 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LEU 132 CD2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ASP 57 CB 0.105 3.655 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N MET 311 CE 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 304 CD1 0.105 3.655 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ARG 218 NH1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L LEU 175 CD2 0.104 3.416 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LEU 132 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ARG 136 NH1 0.103 3.417 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L PHE 230 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L PHE 74 CE1 0.103 3.537 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LEU 392 CD2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LEU 284 CD2 0.103 3.657 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N TRP 331 NE1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N MET 335 CE 0.102 3.418 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLU 98 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LYS 34 CA 0.102 3.198 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M MET 114 N 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ASN 109 ND2 0.102 3.178 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 166 CG1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L VAL 162 O 0.102 3.198 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ASP 57 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LEU 53 O 0.102 3.198 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 101 CA 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 37 O 0.102 3.198 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L VAL 198 CG1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ALA 195 CA 0.101 3.659 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N GLN 171 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 174 CG1 0.101 3.199 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 5 O4' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 4 C2' 0.101 3.239 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M TRP 331 CA 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M THR 270 CG2 0.100 3.660 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N VAL 108 CG2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N MET 107 SD 0.100 3.550 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M THR 270 CG2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLY 266 O 0.100 3.200 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L MET 114 CA 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ASN 109 ND2 0.100 3.420 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L LEU 56 CD2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L TRP 213 CZ2 0.099 3.541 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LEU 329 CD2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 341 CG2 0.098 3.662 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L LEU 291 CD2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L LEU 275 CD2 0.098 3.662 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ARG 368 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L THR 340 CG2 0.098 3.662 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ARG 228 NH1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N VAL 180 CG1 0.098 3.422 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 68 C5' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 67 C2' 0.097 3.663 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 59 CG1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ALA 72 CB 0.097 3.663 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M MET 231 CE 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 77 CG1 0.097 3.663 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LYS 321 CD 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 318 CD1 0.096 3.664 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ARG 218 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LEU 214 O 0.096 3.204 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L MET 107 CA 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L MET 114 CG 0.096 3.664 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 271 CG1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L PHE 267 O 0.096 3.204 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 80 C2' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 81 C6 0.096 3.544 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L VAL 113 CG1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L VAL 104 CG1 0.096 3.664 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ASN 285 CA 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLN 288 CG 0.096 3.664 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ALA 195 CA 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M VAL 198 CG1 0.096 3.664 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ALA 248 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 251 CG2 0.096 3.204 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 77 C5' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 76 C2' 0.095 3.665 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 255 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M VAL 259 CG2 0.095 3.205 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 374 CG1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ASN 285 ND2 0.094 3.426 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 48 C5' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 47 C2' 0.094 3.666 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLU 286 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 341 CD1 0.094 3.666 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L TRP 331 NE1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L MET 335 CE 0.093 3.427 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LYS 196 NZ 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 61 C1' 0.093 3.427 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 26 O2' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 27 C5' 0.093 3.247 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M PRO 112 CD 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LEU 132 CD1 0.093 3.667 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 12 C5' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 11 C2' 0.093 3.667 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N PHE 230 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 234 CG1 0.092 3.208 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 166 CG1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N VAL 162 O 0.092 3.208 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLU 260 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLY 256 O 0.092 3.208 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ALA 248 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 252 CG1 0.092 3.208 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLN 200 NE2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ARG 202 CD 0.092 3.428 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M TRP 173 CH2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M MET 231 CB 0.092 3.548 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L LEU 76 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 59 CD1 0.092 3.668 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N TRP 173 CH2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N MET 231 CB 0.091 3.549 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N VAL 113 CG1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N VAL 104 CG1 0.091 3.669 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 111 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ARG 136 NH2 0.091 3.429 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ARG 12 NH1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLN 15 NE2 0.091 3.189 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 174 CG2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ALA 170 O 0.091 3.209 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LEU 209 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N GLN 171 NE2 0.090 3.430 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 74 C5' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 73 C2' 0.090 3.670 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 255 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N VAL 259 CG2 0.090 3.210 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M SER 289 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLU 276 CB 0.090 3.670 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ALA 393 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N VAL 389 O 0.089 3.211 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L SER 63 OG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L THR 134 OG1 0.089 2.431 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 176 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N MET 231 CB 0.089 3.671 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N THR 340 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ALA 367 CB 0.089 3.671 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 54 C5' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 53 C2' 0.089 3.671 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 271 CG1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N PHE 267 O 0.089 3.211 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ALA 72 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 59 CG1 0.088 3.672 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 236 CG1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M VAL 232 O 0.088 3.212 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 174 CG2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ALA 170 O 0.088 3.212 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 236 CG1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N VAL 232 O 0.088 3.212 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLN 376 NE2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ARG 278 CG 0.087 3.433 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M PHE 230 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M PHE 74 CE1 0.087 3.553 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L THR 270 CG2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLY 266 O 0.087 3.213 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ALA 195 CA 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N VAL 198 CG1 0.087 3.673 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 29 C5' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 28 C2' 0.087 3.673 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 131 CG1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLY 127 O 0.087 3.213 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 131 CG2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L SER 61 CB 0.086 3.674 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 111 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ARG 136 NH2 0.086 3.434 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L TYR 301 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L MET 298 O 0.086 3.214 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 111 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ARG 136 NH2 0.086 3.434 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L VAL 180 CG2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L LEU 313 CD2 0.086 3.674 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 78 C5' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 77 C2' 0.086 3.674 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M PHE 287 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LEU 291 CD1 0.086 3.214 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LYS 229 CD 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ASP 94 CG 0.086 3.674 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 166 CG1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M VAL 162 O 0.086 3.214 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLY 85 CA 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 88 CG2 0.085 3.675 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLN 171 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 174 CG1 0.085 3.215 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LEU 76 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 59 CD1 0.085 3.675 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 55 C1' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L LYS 196 NZ 0.085 3.435 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ALA 248 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 251 CG2 0.085 3.215 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LEU 313 CD2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N VAL 180 CG2 0.085 3.675 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 255 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L VAL 259 CG2 0.085 3.215 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L LEU 132 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ARG 136 NH1 0.084 3.436 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N THR 134 OG1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N SER 63 OG 0.084 2.436 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 7 C2' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 8 C6 0.084 3.556 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 131 CG1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N SER 61 CB 0.084 3.676 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LEU 76 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 59 CD1 0.084 3.676 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N PRO 280 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ALA 283 CB 0.084 3.216 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 84 C5' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 83 C2' 0.083 3.677 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ALA 248 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 251 CG2 0.083 3.217 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 20 C5' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 19 C2' 0.082 3.678 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 251 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 255 CG1 0.082 3.218 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ALA 72 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L THR 75 CG2 0.082 3.218 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LEU 47 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N THR 42 CG2 0.082 3.678 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 52 C2' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 53 C5' 0.082 3.678 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N MET 79 CE 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LEU 51 CB 0.082 3.678 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N TRP 331 CA 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N THR 270 CG2 0.081 3.679 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ALA 72 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 59 CG1 0.081 3.679 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M MET 107 CA 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M MET 114 CG 0.081 3.679 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 111 CG2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LEU 132 CD1 0.081 3.679 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLU 315 OE2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ARG 228 NH1 0.081 2.579 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L VAL 113 CG2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L MET 107 CE 0.081 3.679 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 251 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 255 CG1 0.080 3.220 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ALA 186 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N GLU 190 CD 0.080 3.220 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ARG 89 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLY 85 O 0.080 3.220 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 75 C6 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 74 C2' 0.080 3.560 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 172 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M MET 217 CG 0.080 3.680 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 47 C5' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 46 C2' 0.080 3.680 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M TYR 301 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M MET 298 O 0.080 3.220 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 6 C5' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 5 C2' 0.079 3.681 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N VAL 113 CG2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LEU 51 CD2 0.079 3.681 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ASN 285 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L THR 277 O 0.079 3.221 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N SER 138 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N PRO 62 CD 0.079 3.681 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ALA 72 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M THR 75 CG2 0.079 3.221 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 101 CA 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 37 O 0.078 3.222 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N GLU 260 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N GLY 256 O 0.078 3.222 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M VAL 58 CG2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M PHE 54 O 0.078 3.222 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 255 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L TRP 173 CB 0.078 3.682 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N VAL 58 CG2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N PHE 54 O 0.078 3.222 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 131 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ALA 64 CA 0.078 3.682 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N PRO 112 CD 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LEU 132 CD1 0.078 3.682 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M VAL 113 CG1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M VAL 104 CG1 0.077 3.683 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LYS 133 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N MET 129 O 0.077 3.223 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N THR 270 CG2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N GLY 266 O 0.077 3.223 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N GLY 85 CA 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 88 CG2 0.077 3.683 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ALA 72 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N THR 75 CG2 0.076 3.224 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M SER 317 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L SER 253 CB 0.076 3.684 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M SER 366 OG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLY 363 CA 0.076 3.264 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ARG 36 NH2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLU 124 CD 0.076 3.444 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 97 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 35 CD1 0.076 3.684 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N GLU 50 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N VAL 108 CG2 0.076 3.684 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L TRP 213 CZ3 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 172 CD1 0.076 3.564 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M VAL 259 CG1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LEU 313 CD1 0.076 3.684 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LEU 329 CD2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 341 CG2 0.076 3.684 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M MET 125 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M MET 129 CG 0.075 3.225 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLN 364 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ARG 368 CG 0.075 3.225 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N TRP 213 CZ3 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 172 CD1 0.075 3.565 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N PRO 112 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LEU 132 CD1 0.075 3.685 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M VAL 165 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLU 169 CG 0.075 3.225 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M PHE 230 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 234 CG1 0.075 3.225 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 236 CG1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L VAL 232 O 0.074 3.226 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 67 C1' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LYS 196 NZ 0.074 3.446 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M MET 311 CE 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 304 CD1 0.074 3.686 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N VAL 165 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N GLU 169 CG 0.074 3.226 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N GLU 315 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LEU 225 CD1 0.074 3.686 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L THR 143 CG2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L TYR 151 CB 0.074 3.686 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L LEU 392 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M PRO 280 CB 0.073 3.687 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LEU 56 CD2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M TRP 213 CZ2 0.073 3.567 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L VAL 58 CG2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L PHE 54 O 0.073 3.227 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N SER 138 OG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N PRO 62 CD 0.072 3.268 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ASN 285 ND2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 374 CD1 0.072 3.448 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N SER 289 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLU 276 CB 0.072 3.688 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLN 200 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L LYS 196 O 0.072 3.228 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LYS 178 NZ 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 58 P 0.071 3.669 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLU 356 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L TYR 359 CD2 0.071 3.569 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 176 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L MET 231 CB 0.071 3.689 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LEU 56 CD2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N TRP 213 CZ2 0.071 3.569 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 23 C5' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 22 C2' 0.071 3.689 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 255 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M TRP 173 CB 0.071 3.689 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 11 C5' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 10 C2' 0.071 3.689 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ARG 193 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L SER 189 O 0.070 3.230 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L PRO 84 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L VAL 39 CG1 0.070 3.690 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 66 C5' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 65 C2' 0.070 3.690 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 74 C6 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 73 C2' 0.070 3.570 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ARG 193 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N SER 189 O 0.070 3.230 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ALA 72 CA 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L THR 75 CG2 0.070 3.690 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L SER 366 CA 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L HIS 370 O 0.069 3.231 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L MET 125 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L MET 129 CG 0.069 3.231 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLU 260 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLY 256 O 0.069 3.231 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L PRO 40 CA 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L VAL 104 CG2 0.069 3.691 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 97 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 35 CD1 0.069 3.691 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L MET 114 N 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ASN 109 ND2 0.068 3.212 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L PRO 112 CD 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L LEU 132 CD1 0.068 3.692 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LEU 51 CA 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M MET 107 CE 0.068 3.692 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 172 CG2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 77 CD1 0.068 3.692 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ARG 228 CD 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L VAL 180 CG1 0.068 3.692 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LEU 56 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N THR 52 O 0.067 3.233 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N TRP 331 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N THR 270 CG2 0.067 3.573 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L PRO 84 CA 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L SER 78 OG 0.067 3.273 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 271 CG1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M PHE 267 O 0.067 3.233 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 11 O4' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 10 C2' 0.067 3.273 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L LEU 51 CA 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L MET 107 CE 0.067 3.693 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLY 256 CA 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L VAL 259 CG2 0.066 3.694 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ALA 72 CA 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M THR 75 CG2 0.066 3.694 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N GLU 286 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 341 CD1 0.066 3.694 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ARG 193 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M SER 189 O 0.066 3.234 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N SER 366 OG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N GLY 363 CA 0.065 3.275 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L SER 159 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L VAL 162 CG2 0.065 3.235 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M VAL 180 CG2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LEU 313 CD2 0.065 3.695 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L THR 293 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ASP 290 O 0.065 3.235 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLY 105 CA 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ARG 116 NE 0.065 3.455 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M MET 231 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 176 CD1 0.065 3.695 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M SER 159 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M VAL 162 CG2 0.065 3.235 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M PHE 11 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLU 7 O 0.064 3.236 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ASP 57 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L LEU 53 O 0.064 3.236 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ALA 281 CA 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L LEU 392 CD1 0.064 3.696 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M MET 79 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M THR 75 O 0.064 3.236 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M VAL 337 CG2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M TYR 279 CE2 0.064 3.576 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L PRO 40 CD 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L VAL 39 CG1 0.064 3.696 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LEU 235 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N TRP 173 CZ3 0.064 3.576 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 88 CG2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLY 85 CA 0.064 3.696 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 71 O4' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 70 C2' 0.064 3.276 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N PHE 206 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ASN 204 ND2 0.064 3.456 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ARG 228 CD 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M VAL 180 CG1 0.064 3.696 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ARG 89 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLY 85 O 0.064 3.236 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L MET 217 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 172 CD1 0.063 3.697 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L VAL 165 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 168 CG1 0.063 3.237 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M THR 340 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ALA 367 CB 0.063 3.697 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N MET 217 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 172 CD1 0.063 3.697 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 174 CG2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ALA 170 O 0.062 3.238 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 14 C5' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 13 C2' 0.062 3.698 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLN 364 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ARG 368 CG 0.062 3.238 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLY 274 CA 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L THR 270 O 0.062 3.238 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 58 C6 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LEU 348 CD1 0.062 3.578 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M THR 134 CG2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ARG 130 O 0.062 3.238 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 97 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 35 CD1 0.062 3.698 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 111 CG2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L LEU 132 CD1 0.061 3.699 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 53 O4' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 52 C2' 0.061 3.279 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LEU 235 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M TRP 173 CZ3 0.061 3.579 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N TYR 327 OH 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N PHE 267 CA 0.061 3.279 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M TRP 331 NE1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M MET 335 CE 0.061 3.459 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M TYR 197 CD2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ARG 193 O 0.061 3.119 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LYS 133 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M MET 129 O 0.061 3.239 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ALA 186 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLU 190 CD 0.061 3.239 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ASP 96 OD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLY 246 CA 0.060 3.240 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N SER 317 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M SER 253 CB 0.060 3.700 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 59 O4' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 58 C2' 0.060 3.280 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ARG 89 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N GLY 85 O 0.060 3.240 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ASP 57 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LEU 53 O 0.060 3.240 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 255 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N TRP 173 CB 0.060 3.700 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ARG 193 NH1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ARG 192 CB 0.060 3.460 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 42 C5' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 41 C2' 0.060 3.700 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M THR 75 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M PHE 38 O 0.060 3.240 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 35 C5' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 34 C2' 0.060 3.700 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LEU 128 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N PRO 112 CB 0.060 3.700 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 60 C5' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 59 C2' 0.060 3.700 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ALA 265 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 57 OP1 0.060 3.240 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 176 CG2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N TRP 173 O 0.059 3.241 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L VAL 165 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLU 169 CG 0.059 3.241 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LEU 132 CD2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ASP 57 CB 0.059 3.701 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L LEU 313 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L VAL 259 CG1 0.059 3.701 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 77 CG2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M MET 231 CE 0.058 3.702 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 77 CG1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ALA 73 O 0.058 3.242 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L THR 340 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ALA 367 CB 0.058 3.702 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L SER 44 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ARG 48 CG 0.058 3.242 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N VAL 232 CG2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ARG 228 O 0.057 3.243 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 12 O4' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 11 C2' 0.057 3.283 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 77 CG1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ALA 73 O 0.057 3.243 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L THR 340 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L VAL 337 O 0.057 3.243 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L LEU 314 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L TYR 310 O 0.056 3.244 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ARG 130 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L THR 134 CG2 0.056 3.244 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ARG 307 CD 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LEU 314 CD1 0.056 3.704 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LEU 47 CD2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N THR 42 CG2 0.056 3.704 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N GLY 256 CA 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N VAL 259 CG2 0.055 3.705 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 35 O4' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 34 C2' 0.055 3.285 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 68 N3 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N GLN 199 NE2 0.055 3.225 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N SER 138 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N PRO 62 CG 0.055 3.705 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N MET 125 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N MET 129 CG 0.055 3.245 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M VAL 165 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 168 CG1 0.055 3.245 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 66 O4' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 65 C2' 0.055 3.285 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ALA 281 CA 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LEU 392 CD1 0.054 3.706 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L LEU 175 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L MET 217 CG 0.054 3.706 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L MET 311 CE 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 304 CD1 0.054 3.706 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 9 C6 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 8 C2' 0.054 3.586 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N GLN 364 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ARG 368 CG 0.054 3.246 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M PRO 84 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M VAL 39 CG1 0.054 3.706 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N TYR 327 CD2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 294 CD1 0.054 3.586 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLU 315 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LEU 225 CD1 0.054 3.706 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 64 C2' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 65 O4' 0.054 3.286 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L SER 296 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L LEU 299 CG 0.053 3.247 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 61 OP2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M TYR 258 OH 0.053 2.427 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ALA 135 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N SER 61 CB 0.053 3.707 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ARG 36 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M VAL 100 CG1 0.053 3.707 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LEU 291 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 4 CD1 0.053 3.707 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L SER 78 OG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L PRO 84 CB 0.053 3.287 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LYS 321 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 318 O 0.053 3.247 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ALA 64 CA 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 131 CD1 0.053 3.707 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LYS 120 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ARG 117 CB 0.053 3.707 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 17 C5' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 16 C2' 0.052 3.708 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 79 O2' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 80 C5' 0.052 3.288 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M TYR 327 OH 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M PHE 267 CA 0.052 3.288 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L LEU 56 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L THR 52 O 0.051 3.249 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 30 C5' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 29 C2' 0.051 3.709 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M THR 75 CG2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ALA 55 CB 0.051 3.709 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 176 CG2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M TRP 173 O 0.051 3.249 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N SER 61 OG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 131 CG1 0.051 3.289 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M VAL 113 CG2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M MET 107 CE 0.051 3.709 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 176 CG2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L TRP 173 O 0.050 3.250 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M SER 366 CA 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M HIS 370 O 0.050 3.250 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M TYR 279 CD2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M THR 277 CG2 0.050 3.590 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 83 C5' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 82 C2' 0.050 3.710 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L LEU 209 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLN 171 NE2 0.050 3.470 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LEU 51 CD2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N MET 107 CE 0.050 3.710 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 255 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 174 CG2 0.049 3.711 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L LYS 133 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L MET 129 O 0.049 3.251 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LYS 69 CE 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ALA 64 CB 0.049 3.711 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N PHE 273 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N THR 277 CG2 0.049 3.251 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LYS 120 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ARG 117 CB 0.049 3.711 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLU 276 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 271 O 0.048 3.252 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N THR 320 CG2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ASP 254 CG 0.048 3.712 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLU 50 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M MET 107 CE 0.048 3.712 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 172 CG2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 77 CD1 0.048 3.712 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N VAL 238 CG2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 234 O 0.048 3.252 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LEU 175 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N GLN 171 O 0.047 3.253 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LEU 355 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M SER 332 CB 0.047 3.713 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L PHE 230 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ILE 234 CG1 0.047 3.253 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LYS 239 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LEU 235 O 0.047 3.253 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M PRO 40 CD 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M VAL 39 CG1 0.047 3.713 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ASP 96 OD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLY 246 CA 0.046 3.254 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M PHE 273 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M THR 277 CG2 0.046 3.254 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N GLN 200 NE2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ARG 202 CD 0.046 3.474 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M GLY 85 O 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 88 CG2 0.046 3.254 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M ILE 97 CA 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M THR 33 O 0.046 3.254 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N PHE 74 CE2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 35 CD1 0.046 3.594 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LEU 18 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N TYR 14 O 0.045 3.255 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 4 CD1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LEU 275 CD1 0.045 3.715 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLU 50 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L MET 107 CE 0.045 3.715 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L LEU 132 CD2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L ASP 57 CB 0.045 3.715 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 54 O4' 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/Z U 53 C2' 0.045 3.295 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L PHE 267 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L TYR 327 OH 0.045 3.295 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L LEU 18 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L TYR 14 O 0.045 3.255 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N LEU 76 CG 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ALA 55 CB 0.044 3.716 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L LEU 384 CB 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/L GLN 388 OE1 0.044 3.256 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N TYR 197 CD2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ARG 193 O 0.044 3.136 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N VAL 238 CG1 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/N ILE 234 O 0.044 3.256 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M VAL 396 CG2 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/M LEU 392 O 0.044 3.256 [deleted to fit within ticket limits] > select subtract #26 28 atoms, 28 bonds, 3 residues, 6 models selected > select add #27 3826 atoms, 3812 bonds, 503 residues, 2 models selected > select subtract #27.1 3431 atoms, 3416 bonds, 454 residues, 16 models selected > select subtract #27.2 3270 atoms, 3256 bonds, 431 residues, 15 models selected > hide sel cartoons > select add #27 3826 atoms, 3812 bonds, 503 residues, 14 models selected > select subtract #27 28 atoms, 28 bonds, 3 residues, 15 models selected > select add #26 14779 atoms, 15057 bonds, 5 pseudobonds, 1842 residues, 3 models selected > coulombic sel Using Amber 20 recommended default charges and atom types for standard residues Coulombic values for 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb_K SES surface #1.8: minimum, -15.77, mean -0.30, maximum 13.72 Coulombic values for 9cgi_A SES surface #26.2: minimum, -21.89, mean -1.27, maximum 23.84 Coulombic values for 9cgi_B SES surface #26.3: minimum, -17.78, mean -3.16, maximum 11.29 Coulombic values for 9cgi_C SES surface #26.4: minimum, -16.72, mean -3.70, maximum 11.33 Coulombic values for 9cgi_D SES surface #26.5: minimum, -17.18, mean -2.14, maximum 10.58 Coulombic values for 9cgi_E SES surface #26.6: minimum, -17.72, mean -2.81, maximum 11.54 To also show corresponding color key, enter the above coulombic command and add key true > select subtract #26 28 atoms, 28 bonds, 3 residues, 6 models selected > select add #1 44999 atoms, 45909 bonds, 47 pseudobonds, 5656 residues, 2 models selected > show sel cartoons > ui mousemode right select > select clear > hide #!5 models > select add #26 14751 atoms, 15029 bonds, 5 pseudobonds, 1839 residues, 2 models selected > ui mousemode right ""translate selected models"" > view matrix models #26,1,0,0,-1.1886,0,1,0,17.558,0,0,1,8.777 > ui mousemode right ""rotate selected models"" > view matrix models > #26,0.9949,-0.094514,0.035185,8.5037,0.031255,-0.042748,-0.9986,390.05,0.095886,0.99461,-0.039576,34.591 > view matrix models > #26,-0.41206,0.33602,-0.84693,360.82,-0.81363,-0.55409,0.17602,384.01,-0.41013,0.76163,0.50172,51.686 > view matrix models > #26,-0.20045,0.1588,-0.96675,378.15,0.4724,-0.84882,-0.23738,293.61,-0.85829,-0.50427,0.095133,424.02 > view matrix models > #26,0.32994,0.27052,-0.90441,254.68,0.66956,-0.74243,0.022195,188.56,-0.66546,-0.61288,-0.42608,514.95 > view matrix models > #26,0.97015,0.24011,-0.033876,-26.819,0.24057,-0.93552,0.25872,247.3,0.03043,-0.25915,-0.96536,444.2 > view matrix models > #26,0.96087,0.25429,-0.10988,-12.186,0.27518,-0.92175,0.27324,235.92,-0.031804,-0.29278,-0.95565,458.89 > view matrix models > #26,-0.091514,-0.9932,-0.071913,374.78,-0.77748,0.02614,0.62837,188.77,-0.62222,0.11341,-0.77458,457.26 > view matrix models > #26,-0.92508,-0.33598,-0.17703,429.66,-0.37951,0.80099,0.46302,23.814,-0.013766,0.49551,-0.86849,307.36 > view matrix models > #26,-0.54535,-0.78706,-0.28833,462.14,-0.83645,0.48869,0.24805,199.12,-0.05433,0.37645,-0.92484,345.82 > hide sel surfaces > view matrix models > #26,-0.8066,0.33689,-0.48569,358.9,0.15804,0.91468,0.37199,-73.672,0.56957,0.22329,-0.79103,234.18 > show sel surfaces > view matrix models > #26,-0.45304,0.73558,-0.50366,235.11,0.78479,0.59709,0.16612,-85.793,0.42292,-0.32001,-0.84778,362.03 > view matrix models > #26,-0.42771,0.73503,-0.52612,235.4,0.78958,0.58714,0.1784,-87.425,0.44004,-0.33911,-0.83149,359.02 > view matrix models > #26,-0.53356,0.73211,-0.42347,233.37,0.76521,0.63113,0.12699,-80.263,0.36024,-0.25628,-0.89697,372.01 > view matrix models > #26,-0.64662,0.48872,-0.58569,326.7,0.28647,0.86719,0.40734,-95.201,0.70697,0.095611,-0.70075,213.41 > view matrix models > #26,-0.74162,0.42068,-0.52252,341.57,0.25646,0.89756,0.35863,-85.248,0.61986,0.13196,-0.77353,237.05 > view matrix models > #26,-0.3342,-0.77748,-0.53276,474.15,-0.87787,0.46249,-0.12424,282.39,0.343,0.42618,-0.83709,248.55 > ui mousemode right ""translate selected models"" > view matrix models > #26,-0.3342,-0.77748,-0.53276,469.14,-0.87787,0.46249,-0.12424,271.49,0.343,0.42618,-0.83709,252.11 > view matrix models > #26,-0.3342,-0.77748,-0.53276,462.55,-0.87787,0.46249,-0.12424,268.16,0.343,0.42618,-0.83709,252.09 > ui mousemode right ""rotate selected models"" > view matrix models > #26,-0.064152,-0.94938,-0.30751,398.88,-0.83172,-0.11942,0.5422,222.37,-0.55148,0.29055,-0.78195,418.58 > view matrix models > #26,-0.70823,-0.19994,-0.67708,459.8,-0.32067,0.94552,0.056216,54.026,0.62895,0.25693,-0.73376,210.03 > view matrix models > #26,-0.2232,0.40519,-0.88657,317.86,0.62828,0.75519,0.18697,-104.68,0.74528,-0.51528,-0.42313,255.39 > ui mousemode right ""translate selected models"" > view matrix models > #26,-0.2232,0.40519,-0.88657,292.6,0.62828,0.75519,0.18697,-105.78,0.74528,-0.51528,-0.42313,272.1 > ui mousemode right ""rotate selected models"" > view matrix models > #26,-0.56416,0.70946,-0.42236,206.56,0.64949,0.065482,-0.75755,197.81,-0.50979,-0.70169,-0.49773,536.08 > ui mousemode right ""translate selected models"" > view matrix models > #26,-0.56416,0.70946,-0.42236,218.03,0.64949,0.065482,-0.75755,195.45,-0.50979,-0.70169,-0.49773,533.06 > ui mousemode right ""rotate selected models"" > view matrix models > #26,-0.88295,0.46108,0.088372,211.15,-0.46329,-0.82528,-0.32292,449.77,-0.075962,-0.32607,0.94229,101.97 > ui mousemode right ""translate selected models"" > view matrix models > #26,-0.88295,0.46108,0.088372,240.01,-0.46329,-0.82528,-0.32292,403.92,-0.075962,-0.32607,0.94229,190.96 > view matrix models > #26,-0.88295,0.46108,0.088372,247.52,-0.46329,-0.82528,-0.32292,432.94,-0.075962,-0.32607,0.94229,204.75 > view matrix models > #26,-0.88295,0.46108,0.088372,251.15,-0.46329,-0.82528,-0.32292,431.56,-0.075962,-0.32607,0.94229,207.9 > view matrix models > #26,-0.88295,0.46108,0.088372,249.13,-0.46329,-0.82528,-0.32292,436.72,-0.075962,-0.32607,0.94229,208.06 > ui mousemode right ""rotate selected models"" > view matrix models > #26,-0.92302,0.38037,0.057922,275.72,-0.37782,-0.86759,-0.32332,429,-0.072728,-0.32031,0.94452,206.09 > ui mousemode right ""move picked models"" > ui mousemode right ""translate selected models"" > view matrix models > #26,-0.92302,0.38037,0.057922,272.94,-0.37782,-0.86759,-0.32332,432.28,-0.072728,-0.32031,0.94452,206.3 > view matrix models > #26,-0.92302,0.38037,0.057922,273.18,-0.37782,-0.86759,-0.32332,428.72,-0.072728,-0.32031,0.94452,204.54 > ui tool show Matchmaker > matchmaker #27/A to #26/C pairing ss Parameters --- Chain pairing | ss Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 9cgi, chain C (#26) with 7pno, chain A (#27), sequence alignment score = 264.9 RMSD between 47 pruned atom pairs is 0.588 angstroms; (across all 49 pairs: 0.738) > ui mousemode right select > select clear > select add #26 14751 atoms, 15029 bonds, 5 pseudobonds, 1839 residues, 2 models selected > ui mousemode right ""rotate selected models"" > view matrix models > #26,-0.96833,0.24704,0.036201,307.69,-0.24321,-0.90047,-0.36057,418.41,-0.056477,-0.35795,0.93203,210.53 > ui mousemode right ""translate selected models"" > view matrix models > #26,-0.96833,0.24704,0.036201,299.47,-0.24321,-0.90047,-0.36057,418.25,-0.056477,-0.35795,0.93203,208.56 > ui tool show Matchmaker > matchmaker #27/A to #26/C pairing ss Parameters --- Chain pairing | ss Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 9cgi, chain C (#26) with 7pno, chain A (#27), sequence alignment score = 264.9 RMSD between 47 pruned atom pairs is 0.588 angstroms; (across all 49 pairs: 0.738) > ui mousemode right select > select clear > lighting flat > ui tool show Matchmaker > matchmaker #28/A to #1/Q pairing ss Parameters --- Chain pairing | ss Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb, chain Q (#1) with 4co6, chain A (#28), sequence alignment score = 1659 RMSD between 199 pruned atom pairs is 0.774 angstroms; (across all 330 pairs: 4.755) > select add #27 3798 atoms, 3784 bonds, 500 residues, 1 model selected > select subtract #27 14 models selected > select add #28 7640 atoms, 7651 bonds, 10 pseudobonds, 1078 residues, 2 models selected > ui mousemode right ""translate selected models"" > view matrix models > #28,0.85468,-0.4086,0.32028,165.24,-0.41357,-0.16294,0.89577,131.61,-0.31383,-0.89805,-0.30824,398.15 > view matrix models > #28,0.85468,-0.4086,0.32028,212.71,-0.41357,-0.16294,0.89577,99.285,-0.31383,-0.89805,-0.30824,361.28 > view matrix models > #28,0.85468,-0.4086,0.32028,206.29,-0.41357,-0.16294,0.89577,64.963,-0.31383,-0.89805,-0.30824,396.62 > ui mousemode right ""rotate selected models"" > view matrix models > #28,0.85664,-0.41291,0.30932,206.88,-0.40524,-0.16747,0.89874,64.538,-0.3193,-0.89524,-0.31079,396.94 > view matrix models > #28,0.84646,-0.39223,0.36008,204.16,-0.44398,-0.14666,0.88395,66.574,-0.2939,-0.9081,-0.29828,395.43 > view matrix models > #28,0.85216,-0.40332,0.33342,205.58,-0.42359,-0.15753,0.89205,65.483,-0.30726,-0.9014,-0.30508,396.24 > view matrix models > #28,-0.59605,-0.58709,-0.54777,317.37,-0.65222,0.7519,-0.096164,112.18,0.46833,0.29995,-0.83108,370.51 > ui mousemode right select > select clear > ui mousemode right ""rotate selected models"" > select add #27 3798 atoms, 3784 bonds, 500 residues, 1 model selected > select add #28 11438 atoms, 11435 bonds, 10 pseudobonds, 1578 residues, 17 models selected > select subtract #27 7640 atoms, 7651 bonds, 10 pseudobonds, 1078 residues, 22 models selected > view matrix models > #28,-0.59854,-0.60076,-0.52994,316.75,-0.63906,0.75698,-0.13636,113.73,0.48307,0.25705,-0.837,371.01 > view matrix models > #28,0.96383,-0.25551,-0.075756,220.53,-0.13769,-0.23406,-0.96242,156.2,0.22818,0.93805,-0.26077,337.63 > ui mousemode right ""translate selected models"" > view matrix models > #28,0.96383,-0.25551,-0.075756,228.41,-0.13769,-0.23406,-0.96242,177.36,0.22818,0.93805,-0.26077,323.87 > view matrix models > #28,0.96383,-0.25551,-0.075756,235.45,-0.13769,-0.23406,-0.96242,167.73,0.22818,0.93805,-0.26077,328.82 > view matrix models > #28,0.96383,-0.25551,-0.075756,225.93,-0.13769,-0.23406,-0.96242,148.47,0.22818,0.93805,-0.26077,307.49 > ui mousemode right select > select clear > show #!5 models > hide #!5 models > select add #28 7640 atoms, 7651 bonds, 10 pseudobonds, 1078 residues, 2 models selected > select subtract #28 6 models selected > select add #28.4 1439 atoms, 200 residues, 1 model selected > select subtract #28.4 1 model selected > select add #28.5 317 atoms, 40 residues, 1 model selected > show sel surfaces > select clear > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/mechanism 1.png"" > width 3000 height 2374 supersample 3 transparentBackground true > turn y 90 > turn y -90 > turn y -120 > turn y 120 [Repeated 1 time(s)] > turn x 30 > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/mechanism 2.png"" > width 3000 height 2374 supersample 3 transparentBackground true > open 4co6 fromDatabase pdb format mmcif 4co6 title: Crystal structure of the Nipah virus RNA free nucleoprotein- phosphoprotein complex [more info...] Chain information for 4co6 #29 --- Chain | Description | UniProt A B C | NUCLEOPROTEIN | NCAP_NIPAV 32-383 D E F | PHOSPHOPROTEIN | PHOSP_NIPAV 1-50 Non-standard residues in 4co6 #29 --- BR — bromide ion CL — chloride ion 4co6 mmCIF Assemblies --- 1| software_defined_assembly 2| software_defined_assembly 3| software_defined_assembly 10 atoms have alternate locations. Control/examine alternate locations with Altloc Explorer [start tool...] or the altlocs command. Cell requested for row 27 is out of bounds for table with 35 rows! Resizing table model. > open 4co6 fromDatabase pdb format mmcif 4co6 title: Crystal structure of the Nipah virus RNA free nucleoprotein- phosphoprotein complex [more info...] Chain information for 4co6 #30 --- Chain | Description | UniProt A B C | NUCLEOPROTEIN | NCAP_NIPAV 32-383 D E F | PHOSPHOPROTEIN | PHOSP_NIPAV 1-50 Non-standard residues in 4co6 #30 --- BR — bromide ion CL — chloride ion 4co6 mmCIF Assemblies --- 1| software_defined_assembly 2| software_defined_assembly 3| software_defined_assembly 10 atoms have alternate locations. Control/examine alternate locations with Altloc Explorer [start tool...] or the altlocs command. > open 4co6 fromDatabase pdb format mmcif 4co6 title: Crystal structure of the Nipah virus RNA free nucleoprotein- phosphoprotein complex [more info...] Chain information for 4co6 #31 --- Chain | Description | UniProt A B C | NUCLEOPROTEIN | NCAP_NIPAV 32-383 D E F | PHOSPHOPROTEIN | PHOSP_NIPAV 1-50 Non-standard residues in 4co6 #31 --- BR — bromide ion CL — chloride ion 4co6 mmCIF Assemblies --- 1| software_defined_assembly 2| software_defined_assembly 3| software_defined_assembly 10 atoms have alternate locations. Control/examine alternate locations with Altloc Explorer [start tool...] or the altlocs command. > select add #29 7640 atoms, 7651 bonds, 10 pseudobonds, 1078 residues, 2 models selected > select add #30 15280 atoms, 15302 bonds, 20 pseudobonds, 2156 residues, 4 models selected > select add #31 22920 atoms, 22953 bonds, 30 pseudobonds, 3234 residues, 6 models selected > hide sel atoms > show sel cartoons > show sel surfaces > hide sel surfaces > select subtract #29 15280 atoms, 15302 bonds, 20 pseudobonds, 2156 residues, 22 models selected > select subtract #30 7640 atoms, 7651 bonds, 10 pseudobonds, 1078 residues, 14 models selected > select subtract #31.2 5046 atoms, 5009 bonds, 8 pseudobonds, 748 residues, 8 models selected > select subtract #31.5 4729 atoms, 4690 bonds, 8 pseudobonds, 708 residues, 7 models selected > hide sel cartoons > select add #31 7640 atoms, 7651 bonds, 10 pseudobonds, 1078 residues, 6 models selected > select subtract #31 6 models selected > select add #30 7640 atoms, 7651 bonds, 10 pseudobonds, 1078 residues, 2 models selected > select subtract #30.2 5046 atoms, 5009 bonds, 8 pseudobonds, 748 residues, 8 models selected > select subtract #30.5 4729 atoms, 4690 bonds, 8 pseudobonds, 708 residues, 7 models selected > hide sel cartoons > select add #30 7640 atoms, 7651 bonds, 10 pseudobonds, 1078 residues, 6 models selected > select subtract #30 6 models selected > select add #29 7640 atoms, 7651 bonds, 10 pseudobonds, 1078 residues, 2 models selected > select subtract #29.2 5046 atoms, 5009 bonds, 8 pseudobonds, 748 residues, 8 models selected > select subtract #29.5 4729 atoms, 4690 bonds, 8 pseudobonds, 708 residues, 7 models selected > hide sel cartoons > ui tool show Matchmaker > matchmaker #29/A to #28/A pairing ss Parameters --- Chain pairing | ss Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 4co6, chain A (#28) with 4co6, chain A (#29), sequence alignment score = 1787.5 RMSD between 330 pruned atom pairs is 0.000 angstroms; (across all 330 pairs: 0.000) > ui tool show Matchmaker > matchmaker #30/A to #28/A pairing ss Parameters --- Chain pairing | ss Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 4co6, chain A (#28) with 4co6, chain A (#30), sequence alignment score = 1787.5 RMSD between 330 pruned atom pairs is 0.000 angstroms; (across all 330 pairs: 0.000) > matchmaker #31/A to #28/A pairing ss Parameters --- Chain pairing | ss Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 4co6, chain A (#28) with 4co6, chain A (#31), sequence alignment score = 1787.5 RMSD between 330 pruned atom pairs is 0.000 angstroms; (across all 330 pairs: 0.000) > matchmaker #31/A to #28/A pairing ss Parameters --- Chain pairing | ss Alignment algorithm | Needleman-Wunsch Similarity matrix | BLOSUM-62 SS fraction | 0.3 Gap open (HH/SS/other) | 18/18/6 Gap extend | 1 SS matrix | | | H | S | O ---|---|---|--- H | 6 | -9 | -6 S | | 6 | -6 O | | | 4 Iteration cutoff | 2 Matchmaker 4co6, chain A (#28) with 4co6, chain A (#31), sequence alignment score = 1787.5 RMSD between 330 pruned atom pairs is 0.000 angstroms; (across all 330 pairs: 0.000) > select add #29 7640 atoms, 7651 bonds, 10 pseudobonds, 1078 residues, 6 models selected > select subtract #29 6 models selected > select add #29 7640 atoms, 7651 bonds, 10 pseudobonds, 1078 residues, 2 models selected > ui mousemode right ""translate selected models"" > view matrix models > #29,0.96383,-0.25551,-0.075756,266.78,-0.13769,-0.23406,-0.96242,165.83,0.22818,0.93805,-0.26077,354.3 > select add #30 15280 atoms, 15302 bonds, 20 pseudobonds, 2156 residues, 10 models selected > select subtract #29 7640 atoms, 7651 bonds, 10 pseudobonds, 1078 residues, 14 models selected > view matrix models > #30,0.96383,-0.25551,-0.075756,248.66,-0.13769,-0.23406,-0.96242,215.56,0.22818,0.93805,-0.26077,389.22 > select add #31 15280 atoms, 15302 bonds, 20 pseudobonds, 2156 residues, 10 models selected > select subtract #30 7640 atoms, 7651 bonds, 10 pseudobonds, 1078 residues, 14 models selected > view matrix models > #31,0.96383,-0.25551,-0.075756,187.3,-0.13769,-0.23406,-0.96242,137.29,0.22818,0.93805,-0.26077,268.29 > view matrix models > #31,0.96383,-0.25551,-0.075756,130.59,-0.13769,-0.23406,-0.96242,109.92,0.22818,0.93805,-0.26077,305.01 > view matrix models > #31,0.96383,-0.25551,-0.075756,124.86,-0.13769,-0.23406,-0.96242,93.081,0.22818,0.93805,-0.26077,295.75 > select add #30 15280 atoms, 15302 bonds, 20 pseudobonds, 2156 residues, 10 models selected > select subtract #31 7640 atoms, 7651 bonds, 10 pseudobonds, 1078 residues, 14 models selected > view matrix models > #30,0.96383,-0.25551,-0.075756,173.42,-0.13769,-0.23406,-0.96242,79.32,0.22818,0.93805,-0.26077,377.28 > select add #29 15280 atoms, 15302 bonds, 20 pseudobonds, 2156 residues, 10 models selected > select subtract #30 7640 atoms, 7651 bonds, 10 pseudobonds, 1078 residues, 14 models selected > view matrix models > #29,0.96383,-0.25551,-0.075756,255.93,-0.13769,-0.23406,-0.96242,151.48,0.22818,0.93805,-0.26077,396.42 > select subtract #29 6 models selected > seelct #28 /d Unknown command: seelct #28 /d > seelct #28 d Unknown command: seelct #28 d > select #29/d 319 atoms, 319 bonds, 42 residues, 1 model selected > show sel surfaces > select #30/d 319 atoms, 319 bonds, 42 residues, 1 model selected > show sel surfaces > select #31/d 319 atoms, 319 bonds, 42 residues, 1 model selected > show sel cartoons > show sel surfaces > ui mousemode right select > select clear > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/mechanism 1.png"" > width 3000 height 2374 supersample 3 transparentBackground true > turn y 120 > turn x 30 > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/mechanism 2.png"" > width 3000 height 2374 supersample 3 transparentBackground true > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/Model > mechanism.cxs"" ——— End of log from Fri Apr 4 01:16:01 2025 ——— opened ChimeraX session > select #31/a:3-31 Nothing selected > select #31/a:3 Nothing selected > select #31 /a :3 Nothing selected > select #31 /a 2642 atoms, 2642 bonds, 2 pseudobonds, 378 residues, 2 models selected > select #28,29,30,31 /a 10568 atoms, 10568 bonds, 8 pseudobonds, 1512 residues, 8 models selected > select #28,29,30,31 /a :3 Nothing selected > select #28,29,30,31 /a :4 Nothing selected > select #28,29,30,31 /A :5 Nothing selected > select #28,29,30,31 /A :34 36 atoms, 32 bonds, 4 residues, 4 models selected > ui tool show ""Show Sequence Viewer"" > sequence chain #31/A Alignment identifier is 31/A > select #28,29,30,31 /A :32-260 6856 atoms, 6956 bonds, 8 pseudobonds, 876 residues, 8 models selected > ui tool show ""Color Actions"" > color (#!28-31 & sel) #86dde2ff > select #28,29,30,31 /A :261-369 3460 atoms, 3544 bonds, 436 residues, 4 models selected > color (#!28-31 & sel) #d6b3c4ff > select #28,29,30,31 /A :370-371 60 atoms, 60 bonds, 8 residues, 4 models selected > color (#!28-31 & sel) #b1bf9eff > select #27 /b 161 atoms, 160 bonds, 23 residues, 1 model selected > select #27 /b :900 Nothing selected > select add #31 7640 atoms, 7651 bonds, 10 pseudobonds, 1078 residues, 2 models selected > select add #27 11438 atoms, 11435 bonds, 10 pseudobonds, 1578 residues, 9 models selected > select subtract #31 3798 atoms, 3784 bonds, 500 residues, 21 models selected > select add #26 18549 atoms, 18813 bonds, 5 pseudobonds, 2339 residues, 17 models selected > ui mousemode right ""rotate selected models"" > view matrix models > #26,-0.98169,0.17801,-0.067753,334.4,-0.13878,-0.91214,-0.38566,406.93,-0.13045,-0.3692,0.92015,225.84,#27,0.78712,-0.45681,0.41444,167.1,-0.13234,-0.78136,-0.60989,158.53,0.60243,0.42521,-0.67548,340.1 > view matrix models > #26,-0.98533,0.15754,-0.065556,338,-0.12027,-0.91371,-0.38816,404.49,-0.12105,-0.37458,0.91926,225.29,#27,0.79058,-0.46675,0.39639,167.34,-0.1492,-0.77463,-0.61457,158.72,0.5939,0.42673,-0.68204,340.26 > view matrix models > #26,-0.97738,0.21135,0.0079217,312.75,-0.15714,-0.70059,-0.69605,437.61,-0.14156,-0.68155,0.71795,320.98,#27,0.82658,-0.38407,0.4114,167.46,-0.28026,-0.91478,-0.29091,152.66,0.48807,0.12516,-0.86378,341.98 > ui mousemode right ""translate selected models"" > view matrix models > #26,-0.97738,0.21135,0.0079217,308.9,-0.15714,-0.70059,-0.69605,435.59,-0.14156,-0.68155,0.71795,321.13,#27,0.82658,-0.38407,0.4114,163.61,-0.28026,-0.91478,-0.29091,150.65,0.48807,0.12516,-0.86378,342.13 > view matrix models > #26,-0.97738,0.21135,0.0079217,307.27,-0.15714,-0.70059,-0.69605,434.71,-0.14156,-0.68155,0.71795,321.04,#27,0.82658,-0.38407,0.4114,161.98,-0.28026,-0.91478,-0.29091,149.76,0.48807,0.12516,-0.86378,342.05 > view matrix models > #26,-0.97738,0.21135,0.0079217,306.89,-0.15714,-0.70059,-0.69605,433.23,-0.14156,-0.68155,0.71795,322.02,#27,0.82658,-0.38407,0.4114,161.61,-0.28026,-0.91478,-0.29091,148.28,0.48807,0.12516,-0.86378,343.03 > ui mousemode right ""rotate selected models"" > view matrix models > #26,-0.96061,0.23302,-0.15143,332.68,-0.21622,-0.969,-0.11951,371.4,-0.17458,-0.082061,0.98122,174.31,#27,0.72548,-0.48068,0.49257,160,0.076903,-0.65459,-0.75206,156.48,0.68393,0.58349,-0.43793,337.82 > ui mousemode right ""translate selected models"" > view matrix models > #26,-0.96061,0.23302,-0.15143,328.89,-0.21622,-0.969,-0.11951,383.3,-0.17458,-0.082061,0.98122,172.32,#27,0.72548,-0.48068,0.49257,156.21,0.076903,-0.65459,-0.75206,168.37,0.68393,0.58349,-0.43793,335.83 > ui mousemode right ""rotate selected models"" > view matrix models > #26,-0.89931,0.42408,-0.10672,277.36,-0.41366,-0.90413,-0.10697,403.86,-0.14186,-0.052056,0.98852,160.2,#27,0.70644,-0.32696,0.62772,154.98,0.25077,-0.71374,-0.65398,165.34,0.66185,0.61942,-0.42223,335.91 > ui mousemode right ""translate selected models"" > view matrix models > #26,-0.89931,0.42408,-0.10672,279.76,-0.41366,-0.90413,-0.10697,408.57,-0.14186,-0.052056,0.98852,160.17,#27,0.70644,-0.32696,0.62772,157.38,0.25077,-0.71374,-0.65398,170.05,0.66185,0.61942,-0.42223,335.88 > view matrix models > #26,-0.89931,0.42408,-0.10672,279.39,-0.41366,-0.90413,-0.10697,406.06,-0.14186,-0.052056,0.98852,161.2,#27,0.70644,-0.32696,0.62772,157,0.25077,-0.71374,-0.65398,167.54,0.66185,0.61942,-0.42223,336.91 > view matrix models > #26,-0.89931,0.42408,-0.10672,275.97,-0.41366,-0.90413,-0.10697,417.73,-0.14186,-0.052056,0.98852,155.23,#27,0.70644,-0.32696,0.62772,153.59,0.25077,-0.71374,-0.65398,179.21,0.66185,0.61942,-0.42223,330.94 > ui mousemode right ""rotate selected models"" > view matrix models > #26,-0.81438,0.55189,-0.17946,254.92,-0.56104,-0.82779,0.00028938,408.15,-0.14839,0.10092,0.98377,131.66,#27,0.60046,-0.27636,0.75039,152.47,0.43568,-0.67381,-0.59679,177.11,0.67055,0.68527,-0.28419,328.81 > ui mousemode right ""translate selected models"" > view matrix models > #26,-0.81438,0.55189,-0.17946,253.08,-0.56104,-0.82779,0.00028938,403.24,-0.14839,0.10092,0.98377,141.15,#27,0.60046,-0.27636,0.75039,150.63,0.43568,-0.67381,-0.59679,172.2,0.67055,0.68527,-0.28419,338.3 > view matrix models > #26,-0.81438,0.55189,-0.17946,264.85,-0.56104,-0.82779,0.00028938,399.04,-0.14839,0.10092,0.98377,146.15,#27,0.60046,-0.27636,0.75039,162.4,0.43568,-0.67381,-0.59679,168,0.67055,0.68527,-0.28419,343.31 > ui mousemode right ""rotate selected models"" > view matrix models > #26,-0.84969,0.47946,-0.21942,291.23,-0.49086,-0.87123,-0.0029264,394.99,-0.19257,0.10522,0.97563,154.65,#27,0.60502,-0.35735,0.71151,162.61,0.37378,-0.66156,-0.6501,169.44,0.70302,0.65927,-0.26669,342.62 > ui mousemode right ""translate selected models"" > view matrix models > #26,-0.84969,0.47946,-0.21942,291.42,-0.49086,-0.87123,-0.0029264,394.43,-0.19257,0.10522,0.97563,161.56,#27,0.60502,-0.35735,0.71151,162.8,0.37378,-0.66156,-0.6501,168.89,0.70302,0.65927,-0.26669,349.53 > ui mousemode right select Drag select of 9cgi_A SES surface, 73 of 1141544 triangles > select clear > select add #31 7640 atoms, 7651 bonds, 10 pseudobonds, 1078 residues, 2 models selected > ui mousemode right ""translate selected models"" > view matrix models > #31,0.96383,-0.25551,-0.075756,108.1,-0.13769,-0.23406,-0.96242,91.973,0.22818,0.93805,-0.26077,293.09 > view matrix models > #31,0.96383,-0.25551,-0.075756,98.757,-0.13769,-0.23406,-0.96242,88.128,0.22818,0.93805,-0.26077,293.9 > select add #30 15280 atoms, 15302 bonds, 20 pseudobonds, 2156 residues, 10 models selected > select subtract #31 7640 atoms, 7651 bonds, 10 pseudobonds, 1078 residues, 14 models selected > select add #29 15280 atoms, 15302 bonds, 20 pseudobonds, 2156 residues, 10 models selected > select subtract #30 7640 atoms, 7651 bonds, 10 pseudobonds, 1078 residues, 14 models selected > select add #28 15280 atoms, 15302 bonds, 20 pseudobonds, 2156 residues, 10 models selected > select subtract #29 7640 atoms, 7651 bonds, 10 pseudobonds, 1078 residues, 14 models selected > view matrix models > #28,0.96383,-0.25551,-0.075756,248.12,-0.13769,-0.23406,-0.96242,162.23,0.22818,0.93805,-0.26077,302.26 > ui mousemode right select > select clear > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/mechanism 1.png"" > width 3000 height 2359 supersample 3 transparentBackground true > turn y 120 > turn y -120 > select add #31 7640 atoms, 7651 bonds, 10 pseudobonds, 1078 residues, 2 models selected > select add #30 15280 atoms, 15302 bonds, 20 pseudobonds, 2156 residues, 10 models selected Drag select of 4co6_D SES surface, 20 of 56036 triangles, 56 residues > ui mousemode right ""translate selected models"" > select add #30 8070 atoms, 7651 bonds, 10 pseudobonds, 1134 residues, 4 models selected > select add #31 15280 atoms, 15302 bonds, 20 pseudobonds, 2156 residues, 11 models selected > select subtract #31 7640 atoms, 7651 bonds, 10 pseudobonds, 1078 residues, 14 models selected > view matrix models > #30,0.96383,-0.25551,-0.075756,104.68,-0.13769,-0.23406,-0.96242,72.142,0.22818,0.93805,-0.26077,368.25 > select add #31 15280 atoms, 15302 bonds, 20 pseudobonds, 2156 residues, 10 models selected > select subtract #30 7640 atoms, 7651 bonds, 10 pseudobonds, 1078 residues, 14 models selected > view matrix models > #31,0.96383,-0.25551,-0.075756,86.058,-0.13769,-0.23406,-0.96242,104.92,0.22818,0.93805,-0.26077,279.35 > select add #29 15280 atoms, 15302 bonds, 20 pseudobonds, 2156 residues, 10 models selected > select add #28 22920 atoms, 22953 bonds, 30 pseudobonds, 3234 residues, 18 models selected > select subtract #31 15280 atoms, 15302 bonds, 20 pseudobonds, 2156 residues, 22 models selected > view matrix models > #28,0.96383,-0.25551,-0.075756,257.58,-0.13769,-0.23406,-0.96242,165.34,0.22818,0.93805,-0.26077,302,#29,0.96383,-0.25551,-0.075756,265.4,-0.13769,-0.23406,-0.96242,154.59,0.22818,0.93805,-0.26077,396.16 > turn y 120 > select subtract #29 7640 atoms, 7651 bonds, 10 pseudobonds, 1078 residues, 14 models selected > select subtract #28 6 models selected > select add #28 7640 atoms, 7651 bonds, 10 pseudobonds, 1078 residues, 2 models selected > view matrix models > #28,0.96383,-0.25551,-0.075756,253.14,-0.13769,-0.23406,-0.96242,182.51,0.22818,0.93805,-0.26077,459.68 > turn y -120 > view matrix models > #28,0.96383,-0.25551,-0.075756,168.58,-0.13769,-0.23406,-0.96242,136.8,0.22818,0.93805,-0.26077,474.81 > turn y 120 > turn y -120 > ui mousemode right select > select clear > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/mechanism 1.png"" > width 3000 height 2359 supersample 3 transparentBackground true > turn y 120 > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/mechanism 2.png"" > width 3000 height 2359 supersample 3 transparentBackground true > turn x 30 > turn x -30 > turn y -120 > ui tool show ""Side View"" > select #31/d 319 atoms, 319 bonds, 42 residues, 1 model selected > color (#!31 & sel) #e2ffb7ff > select clear > lighting full > lighting soft > turn y 120 > turn y -120 > lighting shadows true intensity 0.5 > lighting shadows false > lighting shadows true > lighting shadows false > turn y 120 > turn y -120 > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/mechanism 1.png"" > width 3000 height 2359 supersample 3 transparentBackground true > turn y 120 > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/mechanism 2.png"" > width 3000 height 2359 supersample 3 transparentBackground true > turn y -120 > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/mechanism 1.png"" > width 3000 height 2359 supersample 3 transparentBackground true > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/Model > mechanism.cxs"" > open ""/Users/kompa012/Desktop/NiP N protein article/Figures/prot comparison > hel.cxs"" format session Opened cryosparc_P78_J379_map_sharp.mrc as #5, grid size 540,540,540, pixel 0.885, shown at level 0.07, step 1, values float32 Opened cryosparc_P78_J377_009_volume_map.mrc as #4, grid size 540,540,540, pixel 0.885, shown at level 0.044, step 1, values float32 Opened cryosparc_P78_J379_map_sharp_one.mrc as #12, grid size 540,540,540, pixel 0.885, shown at level 0.07, step 1, values float32 Opened cryosparc_P78_J400_008_volume_map_sharp.mrc as #21, grid size 540,540,540, pixel 0.885, shown at level 0.03, step 1, values float32 opened ChimeraX session > open ""/Users/kompa012/Desktop/NiP N protein article/Figures/prot > comparison1.cxs"" format session Opened cryosparc_P78_J379_map_sharp.mrc as #5, grid size 540,540,540, pixel 0.885, shown at level 0.07, step 1, values float32 Opened cryosparc_P78_J377_009_volume_map.mrc as #4, grid size 540,540,540, pixel 0.885, shown at level 0.045, step 1, values float32 Opened cryosparc_P78_J379_map_sharp_one.mrc as #12, grid size 540,540,540, pixel 0.885, shown at level 0.07, step 1, values float32 Opened cryosparc_P78_J400_008_volume_map_sharp.mrc as #21, grid size 540,540,540, pixel 0.885, shown at level 0.045, step 1, values float32 Opened cryosparc_P78_J368_map_sharp_zflip.mrc as #22, grid size 360,360,360, pixel 0.885, shown at level 0.005, step 1, values float32 Opened cryosparc_P78_J378_map_sharp.mrc as #23, grid size 540,540,540, pixel 1.18, shown at level 0.005, step 1, values float32 Opened cryosparc_P78_J365_009_volume_map_zflip.mrc as #24, grid size 360,360,360, pixel 0.885, shown at level 0.045, step 1, values float32 Opened cryosparc_P78_J376_007_volume_map.mrc as #25, grid size 540,540,540, pixel 1.18, shown at level 0.06, step 1, values float32 opened ChimeraX session > show #!11 models > show #!4 models > select add #4 28 atoms, 28 bonds, 3 residues, 3 models selected > volume #4 level 0.07 > volume #4 level 0.03 > transparency (#!1 & sel) 80 > select subtract #4 28 atoms, 28 bonds, 3 residues, 1 model selected > select add #4 28 atoms, 28 bonds, 3 residues, 3 models selected > ui mousemode right select > select clear > select add #4 2 models selected > transparency #4.1 70 > select add #1 44999 atoms, 45909 bonds, 47 pseudobonds, 5656 residues, 4 models selected > select add #6 44999 atoms, 45909 bonds, 51 pseudobonds, 5656 residues, 20 models selected > show sel cartoons > open ""/Users/kompa012/Desktop/NiP N protein article/Figures/prot comparison > hel.cxs"" Opened cryosparc_P78_J379_map_sharp.mrc as #5, grid size 540,540,540, pixel 0.885, shown at level 0.07, step 1, values float32 Opened cryosparc_P78_J377_009_volume_map.mrc as #4, grid size 540,540,540, pixel 0.885, shown at level 0.044, step 1, values float32 Opened cryosparc_P78_J379_map_sharp_one.mrc as #12, grid size 540,540,540, pixel 0.885, shown at level 0.07, step 1, values float32 Opened cryosparc_P78_J400_008_volume_map_sharp.mrc as #21, grid size 540,540,540, pixel 0.885, shown at level 0.03, step 1, values float32 opened ChimeraX session > show #!4 models > hide #!5 models > show #!12 models > hide #!12 models > show #!12 models > show sel cartoons > select add #12 11 atoms, 10 bonds, 1 residue, 3 models selected > select subtract #12 11 atoms, 10 bonds, 1 residue, 1 model selected > open ""/Users/kompa012/Desktop/NiP N protein article/Figures/Model > mechanism.cxs"" Opened cryosparc_P78_J379_map_sharp.mrc as #5, grid size 540,540,540, pixel 0.885, shown at level 0.07, step 1, values float32 Opened cryosparc_P78_J377_009_volume_map.mrc as #4, grid size 540,540,540, pixel 0.885, shown at level 0.045, step 1, values float32 Opened cryosparc_P78_J379_map_sharp_one.mrc as #12, grid size 540,540,540, pixel 0.885, shown at level 0.07, step 1, values float32 Opened cryosparc_P78_J400_008_volume_map_sharp.mrc as #21, grid size 540,540,540, pixel 0.885, shown at level 0.045, step 1, values float32 Opened cryosparc_P78_J368_map_sharp_zflip.mrc as #22, grid size 360,360,360, pixel 0.885, shown at level 0.005, step 1, values float32 Opened cryosparc_P78_J378_map_sharp.mrc as #23, grid size 540,540,540, pixel 1.18, shown at level 0.005, step 1, values float32 Opened cryosparc_P78_J365_009_volume_map_zflip.mrc as #24, grid size 360,360,360, pixel 0.885, shown at level 0.045, step 1, values float32 Opened cryosparc_P78_J376_007_volume_map.mrc as #25, grid size 540,540,540, pixel 1.18, shown at level 0.06, step 1, values float32 opened ChimeraX session > show #!4 models > show #!11 models > select add #4 2 models selected > transparency #4.1 70 > hide #!1 models > select add #11 3094 atoms, 3147 bonds, 398 residues, 3 models selected > show sel cartoons > show #!1 models > hide #!31 models > hide #!30 models > hide #!29 models > hide #!28 models > hide #!26 models > hide #!27 models > hide #!4 models > select clear > ui mousemode right select > select clear > select #1/d,f,q 9282 atoms, 9441 bonds, 1 pseudobond, 1194 residues, 2 models selected > select add #1 44999 atoms, 45909 bonds, 47 pseudobonds, 5656 residues, 5 models selected > select subtract #1.1 41905 atoms, 42762 bonds, 46 pseudobonds, 5258 residues, 17 models selected > select subtract #1.2 38811 atoms, 39615 bonds, 43 pseudobonds, 4860 residues, 16 models selected > select subtract #1.14 35717 atoms, 36468 bonds, 43 pseudobonds, 4462 residues, 15 models selected > select subtract #1.15 34034 atoms, 34617 bonds, 18 pseudobonds, 4378 residues, 14 models selected > select add #1.15 35717 atoms, 34617 bonds, 18 pseudobonds, 4462 residues, 13 models selected > hide sel cartoons > hide sel atoms > hide sel surfaces > select #11:3-30 211 atoms, 213 bonds, 28 residues, 1 model selected > color (#!11 & sel) #f8f0acff > select #11:3-31 219 atoms, 221 bonds, 29 residues, 1 model selected > select #11:32-260 1791 atoms, 1818 bonds, 229 residues, 1 model selected > color (#!11 & sel) #79c7ccff > select #11:261-369 865 atoms, 886 bonds, 109 residues, 1 model selected > color (#!11 & sel) #cfacbdff > select #11:370-400 219 atoms, 219 bonds, 31 residues, 1 model selected > color (#!11 & sel) #abb999ff > select clear > show #!4 models > volume #4 level 0.03 > volume #4 level 0.04 > volume #4 level 0.0375 > hide #!11 models > hide #!1 models > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/Figure 5S.cxs"" > show #!1 models > hide #!1 models > show #!1 models > show #!11 models > hide #!11 models > hide #!1 models > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/layers > interaction map 720.png"" width 3000 height 2355 supersample 3 > transparentBackground true > show #!1 models > show #!11 models > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/layers > interaction map 720 prot.png"" width 3000 height 2355 supersample 3 > transparentBackground true > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/layers > interaction map 720 prot zoom.png"" width 3000 height 2355 supersample 3 > transparentBackground true > select add #4 2 models selected > transparency #4.1 90 > transparency #4.1 80 > select clear > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/layers > interaction map 720 prot.png"" width 3000 height 2352 supersample 3 > transparentBackground true > hide #!1 models > hide #!11 models > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/layers > interaction map 720.png"" width 3000 height 2352 supersample 3 > transparentBackground true > show #!1 models > show #!11 models > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/layers > interaction map 720 prot zoom.png"" width 3000 height 2352 supersample 3 > transparentBackground true > hide #!4 models > select #1/d:158 8 atoms, 7 bonds, 1 residue, 1 model selected > select #1/d:158 8 atoms, 7 bonds, 1 residue, 1 model selected > select #1/d:154 11 atoms, 10 bonds, 1 residue, 1 model selected > hide #!11 models > hide #!1 models > show #!26 models > hide #!26 models > show #!20 models > show #!19 models > show #!18 models > show #!17 models > show #!16 models > show #!15 models > show #!14 models > show #!13 models > show #!1 models > select add #1 44999 atoms, 45909 bonds, 47 pseudobonds, 5656 residues, 3 models selected > select subtract #1 15 models selected > select add #1 44999 atoms, 45909 bonds, 47 pseudobonds, 5656 residues, 2 models selected > hide sel cartoons > select #1/k 3094 atoms, 3147 bonds, 398 residues, 1 model selected > show sel cartoons > select #1/q 3094 atoms, 3147 bonds, 398 residues, 1 model selected > show sel cartoons > hide sel cartoons > select #1/z 1683 atoms, 1851 bonds, 84 residues, 1 model selected > show sel cartoons > hide sel cartoons > select #1/z 1683 atoms, 1851 bonds, 84 residues, 1 model selected > 43-49 Unknown command: 43-49 > show sel cartoons > hide sel cartoons > select #1/z:43-49 140 atoms, 153 bonds, 7 residues, 1 model selected > show sel cartoons > show #!9 models > show #!8 models > show #!7 models > hide #!7 models > show #!10 models > hide #!13 models > select clear > hide #!20 models > hide #!19 models > hide #!18 models > hide #!17 models > hide #!16 models > hide #!15 models > hide #!14 models > hide #!10 models > hide #!9 models > hide #!8 models > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/NiV prot.png"" > width 3000 height 2352 supersample 3 transparentBackground true > show #!7 models > hide #!7 models > show #!8 models > hide #!1 models > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/Sendai.png"" > width 3000 height 2352 supersample 3 transparentBackground true > show #!9 models > hide #!8 models > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/Ebola top.png"" > width 3000 height 2352 supersample 3 transparentBackground true > show #!10 models > hide #!9 models > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/Measles.png"" > width 3000 height 2352 supersample 3 transparentBackground true > show #!14 models > hide #!10 models > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/HMPV top.png"" > width 3000 height 2352 supersample 3 transparentBackground true > show #!15 models > hide #!14 models > show #!14 models > hide #!14 models > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/HPIV3.png"" width > 3000 height 2352 supersample 3 transparentBackground true > show #!16 models > hide #!15 models > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/HPIV5.png"" width > 3000 height 2352 supersample 3 transparentBackground true > show #!17 models > hide #!16 models > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/MuV top.png"" > width 3000 height 2352 supersample 3 transparentBackground true > show #!18 models > hide #!17 models > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/NDV top.png"" > width 3000 height 2352 supersample 3 transparentBackground true > show #!19 models > hide #!18 models > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/HEV top.png"" > width 3000 height 2352 supersample 3 transparentBackground true > show #!20 models > hide #!19 models > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/RSV.png"" width > 3000 height 2352 supersample 3 transparentBackground true > show #!1 models > hide #!1 models > show #!1 models > hide #!20 models > select #1/k:178,192,193,199,258 52 atoms, 49 bonds, 5 residues, 1 model selected > show sel atoms > select #1/z:43-49 140 atoms, 153 bonds, 7 residues, 1 model selected > show sel cartoons > show sel atoms > hide sel cartoons > select clear > ui mousemode right distance > distance #1/K:178@NZ #1/Z:46@OP1 Distance between 7nt5_J377_intactmodel-coot-0_real_space_refined_030.pdb #1/K LYS 178 NZ and /Z U 46 OP1: 3.049Å > show #!6 models > ~distance #1/Z:45@OP1 #1/K:265@N > show #!8 models > select add #8.2 120 atoms, 6 residues, 1 model selected > show sel atoms > hide sel cartoons > ui mousemode right select > select clear > select #8/A:180 9 atoms, 8 bonds, 1 residue, 1 model selected > show sel atoms > hide #!1 models > select #8/A:260 12 atoms, 12 bonds, 1 residue, 1 model selected > show sel atoms > style sel ball Changed 12 atom styles > select #8/A:180 9 atoms, 8 bonds, 1 residue, 1 model selected > style sel ball Changed 9 atom styles > select #8/A:194 8 atoms, 7 bonds, 1 residue, 1 model selected > show sel atoms > style sel ball Changed 8 atom styles > show #!1 models > hide #!8 models > show #!8 models > hide #!1 models > select #8/A:195 11 atoms, 10 bonds, 1 residue, 1 model selected > show sel atoms > style sel sphere Changed 11 atom styles > style sel ball Changed 11 atom styles > ui mousemode right distance > select add #8.2 131 atoms, 10 bonds, 7 residues, 2 models selected > select subtract #8.1 120 atoms, 6 residues, 3 models selected > style sel ball Changed 120 atom styles > select subtract #8.2 1 model selected > show #!1 models > hide #!1 models > distance #8/A:180@NZ #8/B:4@OP1 Distance between 6m7d sendai #8/A LYS 180 NZ and /B U 4 OP1: 2.942Å > distance #8/B:5@OP2 #8/A:180@NZ Distance between 6m7d sendai #8/B U 5 OP2 and /A LYS 180 NZ: 2.958Å > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > distance #8/A:194@ND2 #8/B:6@OP2 Distance between 6m7d sendai #8/A ASN 194 ND2 and /B U 6 OP2: 2.579Å > show #!1 models > hide #!1 models > distance #8/A:195@NH2 #8/B:6@OP2 Distance between 6m7d sendai #8/A ARG 195 NH2 and /B U 6 OP2: 2.706Å > show #!1 models > hide #!6 models > show #!6 models > hide #!8 models > show #!8 models > hide #!1 models > ui mousemode right select > select #8/A:201 9 atoms, 8 bonds, 1 residue, 1 model selected > style sel ball Changed 9 atom styles > show sel atoms > show #!1 models > hide #!1 models > hide #!8 models > show #!1 models > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/NiV DNA zoom > prot.png"" width 3000 height 2352 supersample 3 transparentBackground true > hide #!1 models > show #!8 models > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/Sendai DNA zoom > prot.png"" width 3000 height 2352 supersample 3 transparentBackground true > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/figure 4 prot > compar.cxs"" > select clear > show #!9 models > hide #!8 models Cell requested for row 0 is out of bounds for table with 33 rows! Resizing table model. > show #!1 models > hide #!9 models > show #!9 models > hide #!1 models > select #9/A:181 9 atoms, 8 bonds, 1 residue, 1 model selected > select #9/A:182 9 atoms, 8 bonds, 1 residue, 1 model selected > show sel atoms > select #9/A:181 9 atoms, 8 bonds, 1 residue, 1 model selected > show sel atoms > hide sel atoms > select #9/A:182 9 atoms, 8 bonds, 1 residue, 1 model selected > style sel ball Changed 9 atom styles > show #!1 models > hide #!1 models > select #9/A:174 11 atoms, 10 bonds, 1 residue, 1 model selected > show sel atoms > style sel ball Changed 11 atom styles > show #!1 models > hide #!1 models > select #9/A:175 9 atoms, 8 bonds, 1 residue, 1 model selected > show sel atoms > style sel ball Changed 9 atom styles > show #!1 models > hide #!1 models > show #!1 models > close #2 > close #7 > hide #!9 models > show #!9 models > hide #!9 models > hide #!1 models > show #!1 models > show #!9 models > hide #!1 models > select #9/A:238 9 atoms, 8 bonds, 1 residue, 1 model selected > show sel atoms > style sel ball Changed 9 atom styles > show #!1 models > hide #!9 models > show #!9 models > hide #!1 models > select #9/A:160 9 atoms, 8 bonds, 1 residue, 1 model selected > show sel atoms > style sel ball Changed 9 atom styles > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!9 models > show #!9 models > hide #!9 models > show #!9 models > hide #!1 models > select clear > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/EBOLA DNA zoom > prot.png"" width 3000 height 2352 supersample 3 transparentBackground true > show #!10 models > hide #!9 models > select add #10.3 120 atoms, 6 residues, 1 model selected > show sel atoms > hide sel cartoons > style sel ball Changed 120 atom styles > select add #10 3073 atoms, 3136 bonds, 2 pseudobonds, 383 residues, 3 models selected > select subtract #10 2 models selected > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > select #10/B:200 7 atoms, 6 bonds, 1 residue, 1 model selected > show sel atoms > hide sel atoms > show #!1 models > hide #!1 models > select #10/B:201 9 atoms, 8 bonds, 1 residue, 1 model selected > show sel atoms > style sel ball Changed 9 atom styles > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > select #10/B:180 9 atoms, 8 bonds, 1 residue, 1 model selected > show sel atoms > style sel ball Changed 9 atom styles > show #!1 models > hide #!1 models > ui mousemode right distance > distance #10/B:180@NZ #10/R:10@OP1 Distance between 4uft Measles #10/B LYS 180 NZ and /R C 10 OP1: 3.676Å > distance #10/R:11@OP2 #10/B:180@NZ Distance between 4uft Measles #10/R C 11 OP2 and /B LYS 180 NZ: 4.476Å > ~distance #10/R:11@OP2 #10/B:180@NZ > show #!1 models > hide #!1 models > ui mousemode right select > select #10/B:260 12 atoms, 12 bonds, 1 residue, 1 model selected > show sel atoms > style sel ball Changed 12 atom styles > show #!1 models > hide #!1 models > show #!1 models > hide #!10 models > show #!10 models > hide #!1 models > select #10/B:194 11 atoms, 10 bonds, 1 residue, 1 model selected > show sel atoms > style sel ball Changed 11 atom styles > select #10/B:195 11 atoms, 10 bonds, 1 residue, 1 model selected > show sel atoms > style sel ball Changed 11 atom styles > show #!1 models > hide #!1 models > show #!1 models > hide #!10 models > show #!10 models > hide #!1 models > ui mousemode right distance > distance #10/B:194@NH2 #10/R:12@OP2 Distance between 4uft Measles #10/B ARG 194 NH2 and /R C 12 OP2: 5.503Å > distance #10/B:194@NH1 #10/R:12@OP2 Distance between 4uft Measles #10/B ARG 194 NH1 and /R C 12 OP2: 3.413Å > ~distance #10/B:194@NH2 #10/R:12@OP2 > distance #10/B:195@NH2 #10/R:11@OP1 Distance between 4uft Measles #10/B ARG 195 NH2 and /R C 11 OP1: 7.347Å > ~distance #10/B:195@NH2 #10/R:11@OP1 > distance #10/B:195@NH1 #10/R:11@OP1 Distance between 4uft Measles #10/B ARG 195 NH1 and /R C 11 OP1: 6.955Å > ~distance #10/B:195@NH1 #10/R:11@OP1 > show #!1 models > hide #!1 models > ui mousemode right select > select clear > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/measls DNA zoom > prot.png"" width 3000 height 2352 supersample 3 transparentBackground true > show #!14 models > hide #!10 models > select add #14.5 280 atoms, 14 residues, 1 model selected > hide sel cartoons > show sel atoms > style sel ball Changed 280 atom styles > select add #14 6056 atoms, 6171 bonds, 758 residues, 2 models selected > color (#!14 & sel) byhetero > select subtract #14 5 models selected > show #!1 models > hide #!1 models > select #14/C:171 9 atoms, 8 bonds, 1 residue, 1 model selected > show sel atoms > style sel ball Changed 9 atom styles > show #!1 models > hide #!1 models > ui mousemode right distance > distance #10/B:195@NH1 #14/C:171@NZ Distance between 4uft Measles #10/B ARG 195 NH1 and 8pds HMPV #14/C LYS 171 NZ: 7.647Å > distance #14/E:69@OP2 #14/C:171@NZ Distance between 8pds HMPV #14/E C 69 OP2 and /C LYS 171 NZ: 3.023Å > distance #14/E:68@OP1 #14/C:171@NZ Distance between 8pds HMPV #14/E C 68 OP1 and /C LYS 171 NZ: 3.361Å > ui mousemode right select > select clear > show #!1 models > hide #!1 models > select #14/C:250 9 atoms, 8 bonds, 1 residue, 1 model selected > show sel atoms > style sel ball Changed 9 atom styles > show #!1 models > hide #!14 models > show #!14 models > hide #!1 models > select #14/E:71@OP2 1 atom, 1 residue, 1 model selected > select #14/C:250@NE2 1 atom, 1 residue, 1 model selected > ui mousemode right distance > distance #14/E:71@OP2 #14/C:250@NE2 Distance between 8pds HMPV #14/E C 71 OP2 and /C GLN 250 NE2: 6.013Å > ~distance #14/E:71@OP2 #14/C:250@NE2 > distance #14/E:70@OP1 #14/C:250@NE2 Distance between 8pds HMPV #14/E C 70 OP1 and /C GLN 250 NE2: 9.537Å > ~distance #14/E:70@OP1 #14/C:250@NE2 > show #!1 models > hide #!1 models > ui mousemode right select > select #14/C:185 11 atoms, 10 bonds, 1 residue, 1 model selected > select #14/C:186 11 atoms, 10 bonds, 1 residue, 1 model selected > show sel atoms > style sel ball Changed 11 atom styles > select #14/C:185 11 atoms, 10 bonds, 1 residue, 1 model selected > show sel atoms > style sel ball Changed 11 atom styles > ui mousemode right distance > distance #14/E:70@OP2 #14/C:185@NH1 Distance between 8pds HMPV #14/E C 70 OP2 and /C ARG 185 NH1: 5.093Å > distance #14/C:185@NH2 #14/E:70@OP2 Distance between 8pds HMPV #14/C ARG 185 NH2 and /E C 70 OP2: 3.124Å > ~distance #14/E:70@OP2 #14/C:185@NH1 > distance #14/C:186@NE #14/E:71@OP2 Distance between 8pds HMPV #14/C ARG 186 NE and /E C 71 OP2: 2.827Å > ui mousemode right select > select clear > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/HMPV DNA zoom > prot.png"" width 3000 height 2352 supersample 3 transparentBackground true > show #!15 models > hide #!14 models > select add #15.3 169 atoms, 23 residues, 1 model selected > select add #15.2 2654 atoms, 351 residues, 2 models selected > select subtract #15.3 2485 atoms, 328 residues, 3 models selected > select add #15.3 2654 atoms, 351 residues, 2 models selected > select subtract #15.2 169 atoms, 23 residues, 3 models selected > hide sel cartoons > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > select #15/A:200 9 atoms, 8 bonds, 1 residue, 1 model selected > show sel atoms > style sel ball Changed 9 atom styles > show #!1 models > hide #!1 models > select #15/A:194 11 atoms, 10 bonds, 1 residue, 1 model selected > show sel atoms > style sel ball Changed 11 atom styles > select #15/A:193 7 atoms, 6 bonds, 1 residue, 1 model selected > show sel atoms > style sel ball Changed 7 atom styles > show #!1 models > hide #!1 models > select #15/A:179 9 atoms, 8 bonds, 1 residue, 1 model selected > show sel atoms > style sel ball Changed 9 atom styles > show #!1 models > hide #!1 models > select #15/A:259 12 atoms, 12 bonds, 1 residue, 1 model selected > show sel atoms > style sel ball Changed 12 atom styles > show #!1 models > hide #!1 models > select clear > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/HIPV3 DNA zoom > prot.png"" width 3000 height 2352 supersample 3 transparentBackground true > show #!16 models > hide #!15 models > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > select #16/G:180 9 atoms, 8 bonds, 1 residue, 1 model selected > select add #16.16 1569 atoms, 8 bonds, 79 residues, 2 models selected > show sel atoms > select subtract #16.9 1560 atoms, 78 residues, 3 models selected > select add #16.9 4695 atoms, 473 residues, 2 models selected > color (#!16 & sel) byhetero > style sel ball Changed 4695 atom styles > select clear > show #!1 models > hide #!1 models > select #16/G:201 9 atoms, 8 bonds, 1 residue, 1 model selected > show sel atoms > select #16/G:202 9 atoms, 8 bonds, 1 residue, 1 model selected > show sel atoms > select #16/G:201 9 atoms, 8 bonds, 1 residue, 1 model selected > hide sel cartoons > show sel cartoons > hide sel atoms > select #16/G:200 11 atoms, 10 bonds, 1 residue, 1 model selected > show sel atoms > hide sel atoms > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > select #16/G:201 9 atoms, 8 bonds, 1 residue, 1 model selected > select #16/G:202 9 atoms, 8 bonds, 1 residue, 1 model selected > hide sel atoms > select #16/G:201 9 atoms, 8 bonds, 1 residue, 1 model selected > show sel atoms > ui mousemode right distance > distance #16/G:201@CG #16/N:58@O4 Distance between 4xjn HPIV5 #16/G GLN 201 CG and /N U 58 O4: 3.301Å > ~distance #16/G:201@CG #16/N:58@O4 > hide sel atoms > ui mousemode right select > select #16/G:197 9 atoms, 8 bonds, 1 residue, 1 model selected > show sel atoms > select #16/G:198 9 atoms, 8 bonds, 1 residue, 1 model selected > show sel atoms > select #16/G:260 12 atoms, 12 bonds, 1 residue, 1 model selected > show sel atoms > ui mousemode right distance > distance #16/G:260@OH #16/N:58@OP2 Distance between 4xjn HPIV5 #16/G TYR 260 OH and /N U 58 OP2: 2.890Å > distance #16/G:198@NZ #16/N:58@OP2 Distance between 4xjn HPIV5 #16/G LYS 198 NZ and /N U 58 OP2: 5.422Å > ~distance #16/G:198@NZ #16/N:58@OP2 > distance #16/G:198@NZ #16/N:58@O4' Distance between 4xjn HPIV5 #16/G LYS 198 NZ and /N U 58 O4': 3.863Å > ui mousemode right select > select #16/G:197 9 atoms, 8 bonds, 1 residue, 1 model selected > hide sel atoms > select #16/G:202 9 atoms, 8 bonds, 1 residue, 1 model selected > show sel atoms > ui mousemode right distance > distance #16/G:202@NE2 #16/N:58@O4 Distance between 4xjn HPIV5 #16/G GLN 202 NE2 and /N U 58 O4: 6.730Å > ~distance #16/G:202@NE2 #16/N:58@O4 > ~distance #16/G:198@NZ #16/N:58@O4' > ui mousemode right select > select #16/G:202 9 atoms, 8 bonds, 1 residue, 1 model selected > hide sel atoms > select #16/G:198 9 atoms, 8 bonds, 1 residue, 1 model selected > hide sel cartoons > show sel cartoons > hide sel atoms > select #16/G:201 9 atoms, 8 bonds, 1 residue, 1 model selected > show sel atoms > ui tool show Rotamers Populating font family aliases took 241 ms. Replace uses of missing font family ""Times"" with one that exists to avoid this cost. > swapaa interactive sel GLN rotLib Dunbrack 4xjn HPIV5 #16/G GLN 201: phi -72.1, psi -30.6 trans Changed 648 bond radii > ui mousemode right distance > distance #16.17.2/A:1@OE1 #!16/N:58@O4 Distance between rotamer 2 #16.17.2/A GLN 1 OE1 and 4xjn HPIV5 #!16/N U 58 O4: 1.656Å > distance #!16/N:58@O4 #16.17.58/A:1@NE2 Distance between 4xjn HPIV5 #!16/N U 58 O4 and rotamer 58 #16.17.58/A GLN 1 NE2: 2.287Å > ui mousemode right select > select clear > select #16/G:194 9 atoms, 8 bonds, 1 residue, 1 model selected > show sel atoms > ui mousemode right distance > ~distance #10/B:194@NH1 #10/R:12@OP2 > distance #16/G:194@NZ #16/N:57@OP2 Distance between 4xjn HPIV5 #16/G LYS 194 NZ and /N U 57 OP2: 3.935Å > ui mousemode right select > select #16/G:195 11 atoms, 10 bonds, 1 residue, 1 model selected > show sel atoms > ui mousemode right distance > distance #16/N:56@OP1 #16/G:195@NH1 Distance between 4xjn HPIV5 #16/N U 56 OP1 and /G ARG 195 NH1: 6.862Å > ~distance #16/N:56@OP1 #16/G:195@NH1 > distance #16/G:195@NH2 #16/N:57@OP2 Distance between 4xjn HPIV5 #16/G ARG 195 NH2 and /N U 57 OP2: 3.089Å > ui mousemode right select > select clear > show #!1 models > hide #!1 models > show #!1 models > hide #!1 models > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/HIPV5 DNA zoom > prot.png"" width 3000 height 2352 supersample 3 transparentBackground true > show #!17 models > hide #!16 models > select add #17.2 120 atoms, 6 residues, 1 model selected > hide sel cartoons > show sel atoms > style sel ball Changed 120 atom styles > select add #17 3088 atoms, 3161 bonds, 380 residues, 2 models selected > select subtract #17 2 models selected > show #!1 models > hide #!1 models > select #17/A:201 9 atoms, 8 bonds, 1 residue, 1 model selected > show sel atoms > style sel ball Changed 9 atom styles > select #17/A:260 12 atoms, 12 bonds, 1 residue, 1 model selected > show sel atoms > style sel ball Changed 12 atom styles > select #17/A:194 11 atoms, 10 bonds, 1 residue, 1 model selected > show sel atoms > style sel ball Changed 11 atom styles > select #17/A:195 11 atoms, 10 bonds, 1 residue, 1 model selected > show sel atoms > style sel ball Changed 11 atom styles > select clear > select #17/A:180 9 atoms, 8 bonds, 1 residue, 1 model selected > show sel atoms > style sel ball Changed 9 atom styles > ui mousemode right distance > distance #17/B:23@OP1 #17/A:180@NZ Distance between 7ewq MuV #17/B U 23 OP1 and /A LYS 180 NZ: 2.721Å > distance #17/A:194@CZ #17/B:25@OP2 Distance between 7ewq MuV #17/A ARG 194 CZ and /B U 25 OP2: 4.234Å > distance #17/A:195@NH1 #17/B:25@OP2 Distance between 7ewq MuV #17/A ARG 195 NH1 and /B U 25 OP2: 3.763Å > distance #17/A:194@NH2 #17/B:24@OP1 Distance between 7ewq MuV #17/A ARG 194 NH2 and /B U 24 OP1: 2.864Å > ~distance #17/A:194@CZ #17/B:25@OP2 > ui mousemode right select > select clear > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/MUV DNA zoom > prot.png"" width 3000 height 2352 supersample 3 transparentBackground true > show #!18 models > hide #!17 models > select add #18.3 120 atoms, 6 residues, 1 model selected > show sel atoms > hide sel cartoons > style sel ball Changed 120 atom styles > select clear > select #18/A:199 9 atoms, 8 bonds, 1 residue, 1 model selected > show sel atoms > style sel ball Changed 9 atom styles > select #18/A:258 12 atoms, 12 bonds, 1 residue, 1 model selected > show sel atoms > style sel ball Changed 12 atom styles > select #18/A:193 11 atoms, 10 bonds, 1 residue, 1 model selected > show sel atoms > style sel ball Changed 11 atom styles > select #18/A:192 11 atoms, 10 bonds, 1 residue, 1 model selected > show sel atoms > style sel ball Changed 11 atom styles > select #18/A:178 9 atoms, 8 bonds, 1 residue, 1 model selected > show sel atoms > style sel ball Changed 9 atom styles > save ""/Users/kompa012/Desktop/NiP N protein article/Figures/figure 4 prot > compar.cxs"" ===== Log before crash end ===== Log: Startup Messages --- note | available bundle cache has not been initialized yet UCSF ChimeraX version: 1.8 (2024-06-10) © 2016-2024 Regents of the University of California. All rights reserved. How to cite UCSF ChimeraX OpenGL version: 4.1 Metal - 89.3 OpenGL renderer: Apple M2 OpenGL vendor: Apple Python: 3.11.4 Locale: UTF-8 Qt version: PyQt6 6.6.1, Qt 6.6.1 Qt runtime version: 6.6.3 Qt platform: cocoa Hardware: Hardware Overview: Model Name: MacBook Pro Model Identifier: Mac14,7 Model Number: Z16S0005DLL/A Chip: Apple M2 Total Number of Cores: 8 (4 performance and 4 efficiency) Memory: 16 GB System Firmware Version: 11881.81.4 OS Loader Version: 11881.81.4 Software: System Software Overview: System Version: macOS 15.3.2 (24D81) Kernel Version: Darwin 24.3.0 Time since boot: 24 days, 9 hours, 31 minutes Graphics/Displays: Apple M2: Chipset Model: Apple M2 Type: GPU Bus: Built-In Total Number of Cores: 10 Vendor: Apple (0x106b) Metal Support: Metal 3 Displays: PHL 272P7VU: Resolution: 3840 x 2160 (2160p/4K UHD 1 - Ultra High Definition) UI Looks like: 1920 x 1080 @ 60.00Hz Main Display: Yes Mirror: Off Online: Yes Rotation: Supported Color LCD: Display Type: Built-In Retina LCD Resolution: 2560 x 1600 Retina Mirror: Off Online: Yes Automatically Adjust Brightness: Yes Connection Type: Internal Installed Packages: alabaster: 0.7.16 appdirs: 1.4.4 appnope: 0.1.4 asttokens: 2.4.1 Babel: 2.15.0 beautifulsoup4: 4.12.3 blockdiag: 3.0.0 blosc2: 2.0.0 build: 1.2.1 certifi: 2023.11.17 cftime: 1.6.4 charset-normalizer: 3.3.2 ChimeraX-AddCharge: 1.5.17 ChimeraX-AddH: 2.2.6 ChimeraX-AlignmentAlgorithms: 2.0.2 ChimeraX-AlignmentHdrs: 3.5 ChimeraX-AlignmentMatrices: 2.1 ChimeraX-Alignments: 2.12.7 ChimeraX-AlphaFold: 1.0 ChimeraX-AltlocExplorer: 1.1.1 ChimeraX-AmberInfo: 1.0 ChimeraX-Arrays: 1.1 ChimeraX-Atomic: 1.57.1 ChimeraX-AtomicLibrary: 14.0.6 ChimeraX-AtomSearch: 2.0.1 ChimeraX-AxesPlanes: 2.4 ChimeraX-BasicActions: 1.1.2 ChimeraX-BILD: 1.0 ChimeraX-BlastProtein: 2.4.6 ChimeraX-BondRot: 2.0.4 ChimeraX-BugReporter: 1.0.1 ChimeraX-BuildStructure: 2.12.1 ChimeraX-Bumps: 1.0 ChimeraX-BundleBuilder: 1.2.7 ChimeraX-ButtonPanel: 1.0.1 ChimeraX-CageBuilder: 1.0.1 ChimeraX-CellPack: 1.0 ChimeraX-Centroids: 1.4 ChimeraX-ChangeChains: 1.1 ChimeraX-CheckWaters: 1.4 ChimeraX-ChemGroup: 2.0.1 ChimeraX-Clashes: 2.2.4 ChimeraX-ColorActions: 1.0.5 ChimeraX-ColorGlobe: 1.0 ChimeraX-ColorKey: 1.5.6 ChimeraX-CommandLine: 1.2.5 ChimeraX-ConnectStructure: 2.0.1 ChimeraX-Contacts: 1.0.1 ChimeraX-Core: 1.8 ChimeraX-CoreFormats: 1.2 ChimeraX-coulombic: 1.4.3 ChimeraX-Crosslinks: 1.0 ChimeraX-Crystal: 1.0 ChimeraX-CrystalContacts: 1.0.1 ChimeraX-DataFormats: 1.2.3 ChimeraX-Dicom: 1.2.4 ChimeraX-DiffPlot: 1.0 ChimeraX-DistMonitor: 1.4.2 ChimeraX-DockPrep: 1.1.3 ChimeraX-Dssp: 2.0 ChimeraX-EMDB-SFF: 1.0 ChimeraX-ESMFold: 1.0 ChimeraX-FileHistory: 1.0.1 ChimeraX-FunctionKey: 1.0.1 ChimeraX-Geometry: 1.3 ChimeraX-gltf: 1.0 ChimeraX-Graphics: 1.1.1 ChimeraX-Hbonds: 2.4 ChimeraX-Help: 1.2.2 ChimeraX-HKCage: 1.3 ChimeraX-IHM: 1.1 ChimeraX-ImageFormats: 1.2 ChimeraX-IMOD: 1.0 ChimeraX-IO: 1.0.1 ChimeraX-ItemsInspection: 1.0.1 ChimeraX-IUPAC: 1.0 ChimeraX-Label: 1.1.10 ChimeraX-ListInfo: 1.2.2 ChimeraX-Log: 1.1.6 ChimeraX-LookingGlass: 1.1 ChimeraX-Maestro: 1.9.1 ChimeraX-Map: 1.2 ChimeraX-MapData: 2.0 ChimeraX-MapEraser: 1.0.1 ChimeraX-MapFilter: 2.0.1 ChimeraX-MapFit: 2.0 ChimeraX-MapSeries: 2.1.1 ChimeraX-Markers: 1.0.1 ChimeraX-Mask: 1.0.2 ChimeraX-MatchMaker: 2.1.3 ChimeraX-MCopy: 1.0 ChimeraX-MDcrds: 2.7.1 ChimeraX-MedicalToolbar: 1.0.3 ChimeraX-Meeting: 1.0.1 ChimeraX-MLP: 1.1.1 ChimeraX-mmCIF: 2.14.1 ChimeraX-MMTF: 2.2 ChimeraX-Modeller: 1.5.17 ChimeraX-ModelPanel: 1.5 ChimeraX-ModelSeries: 1.0.1 ChimeraX-Mol2: 2.0.3 ChimeraX-Mole: 1.0 ChimeraX-Morph: 1.0.2 ChimeraX-MouseModes: 1.2 ChimeraX-Movie: 1.0 ChimeraX-Neuron: 1.0 ChimeraX-Nifti: 1.2 ChimeraX-NMRSTAR: 1.0.2 ChimeraX-NRRD: 1.2 ChimeraX-Nucleotides: 2.0.3 ChimeraX-OpenCommand: 1.13.5 ChimeraX-PDB: 2.7.5 ChimeraX-PDBBio: 1.0.1 ChimeraX-PDBLibrary: 1.0.4 ChimeraX-PDBMatrices: 1.0 ChimeraX-PickBlobs: 1.0.1 ChimeraX-Positions: 1.0 ChimeraX-PresetMgr: 1.1.1 ChimeraX-PubChem: 2.2 ChimeraX-ReadPbonds: 1.0.1 ChimeraX-Registration: 1.1.2 ChimeraX-RemoteControl: 1.0 ChimeraX-RenderByAttr: 1.4.1 ChimeraX-RenumberResidues: 1.1 ChimeraX-ResidueFit: 1.0.1 ChimeraX-RestServer: 1.2 ChimeraX-RNALayout: 1.0 ChimeraX-RotamerLibMgr: 4.0 ChimeraX-RotamerLibsDunbrack: 2.0 ChimeraX-RotamerLibsDynameomics: 2.0 ChimeraX-RotamerLibsRichardson: 2.0 ChimeraX-SaveCommand: 1.5.1 ChimeraX-SchemeMgr: 1.0 ChimeraX-SDF: 2.0.2 ChimeraX-Segger: 1.0 ChimeraX-Segment: 1.0.1 ChimeraX-Segmentations: 3.0.15 ChimeraX-SelInspector: 1.0 ChimeraX-SeqView: 2.11.2 ChimeraX-Shape: 1.0.1 ChimeraX-Shell: 1.0.1 ChimeraX-Shortcuts: 1.1.1 ChimeraX-ShowSequences: 1.0.3 ChimeraX-SideView: 1.0.1 ChimeraX-Smiles: 2.1.2 ChimeraX-SmoothLines: 1.0 ChimeraX-SpaceNavigator: 1.0 ChimeraX-StdCommands: 1.16.5 ChimeraX-STL: 1.0.1 ChimeraX-Storm: 1.0 ChimeraX-StructMeasure: 1.2.1 ChimeraX-Struts: 1.0.1 ChimeraX-Surface: 1.0.1 ChimeraX-SwapAA: 2.0.1 ChimeraX-SwapRes: 2.5 ChimeraX-TapeMeasure: 1.0 ChimeraX-TaskManager: 1.0 ChimeraX-Test: 1.0 ChimeraX-Toolbar: 1.1.2 ChimeraX-ToolshedUtils: 1.2.4 ChimeraX-Topography: 1.0 ChimeraX-ToQuest: 1.0 ChimeraX-Tug: 1.0.1 ChimeraX-UI: 1.39.1 ChimeraX-uniprot: 2.3 ChimeraX-UnitCell: 1.0.1 ChimeraX-ViewDockX: 1.4.3 ChimeraX-VIPERdb: 1.0 ChimeraX-Vive: 1.1 ChimeraX-VolumeMenu: 1.0.1 ChimeraX-vrml: 1.0 ChimeraX-VTK: 1.0 ChimeraX-WavefrontOBJ: 1.0 ChimeraX-WebCam: 1.0.2 ChimeraX-WebServices: 1.1.4 ChimeraX-Zone: 1.0.1 colorama: 0.4.6 comm: 0.2.2 contourpy: 1.2.1 cxservices: 1.2.2 cycler: 0.12.1 Cython: 3.0.10 debugpy: 1.8.1 decorator: 5.1.1 docutils: 0.20.1 executing: 2.0.1 filelock: 3.13.4 fonttools: 4.53.0 funcparserlib: 2.0.0a0 glfw: 2.7.0 grako: 3.16.5 h5py: 3.11.0 html2text: 2024.2.26 idna: 3.7 ihm: 1.0 imagecodecs: 2024.1.1 imagesize: 1.4.1 ipykernel: 6.29.2 ipython: 8.21.0 ipywidgets: 8.1.3 jedi: 0.19.1 jinja2: 3.1.4 jupyter-client: 8.6.0 jupyter-core: 5.7.2 jupyterlab-widgets: 3.0.11 kiwisolver: 1.4.5 line-profiler: 4.1.2 lxml: 5.2.1 lz4: 4.3.3 MarkupSafe: 2.1.5 matplotlib: 3.8.4 matplotlib-inline: 0.1.7 msgpack: 1.0.8 nest-asyncio: 1.6.0 netCDF4: 1.6.5 networkx: 3.3 nibabel: 5.2.0 nptyping: 2.5.0 numexpr: 2.10.0 numpy: 1.26.4 openvr: 1.26.701 packaging: 23.2 ParmEd: 4.2.2 parso: 0.8.4 pep517: 0.13.1 pexpect: 4.9.0 pillow: 10.3.0 pip: 24.0 pkginfo: 1.10.0 platformdirs: 4.2.2 prompt-toolkit: 3.0.47 psutil: 5.9.8 ptyprocess: 0.7.0 pure-eval: 0.2.2 py-cpuinfo: 9.0.0 pycollada: 0.8 pydicom: 2.4.4 pygments: 2.17.2 pynmrstar: 3.3.4 pynrrd: 1.0.0 PyOpenGL: 3.1.7 PyOpenGL-accelerate: 3.1.7 pyopenxr: 1.0.3401 pyparsing: 3.1.2 pyproject-hooks: 1.1.0 PyQt6-commercial: 6.6.1 PyQt6-Qt6: 6.6.3 PyQt6-sip: 13.6.0 PyQt6-WebEngine-commercial: 6.6.0 PyQt6-WebEngine-Qt6: 6.6.3 python-dateutil: 2.9.0.post0 pytz: 2024.1 pyzmq: 26.0.3 qtconsole: 5.5.1 QtPy: 2.4.1 RandomWords: 0.4.0 requests: 2.31.0 scipy: 1.13.0 setuptools: 69.5.1 setuptools-scm: 8.0.4 sfftk-rw: 0.8.1 six: 1.16.0 snowballstemmer: 2.2.0 sortedcontainers: 2.4.0 soupsieve: 2.5 sphinx: 7.2.6 sphinx-autodoc-typehints: 2.0.1 sphinxcontrib-applehelp: 1.0.8 sphinxcontrib-blockdiag: 3.0.0 sphinxcontrib-devhelp: 1.0.6 sphinxcontrib-htmlhelp: 2.0.5 sphinxcontrib-jsmath: 1.0.1 sphinxcontrib-qthelp: 1.0.7 sphinxcontrib-serializinghtml: 1.1.10 stack-data: 0.6.3 superqt: 0.6.3 tables: 3.8.0 tcia-utils: 1.5.1 tifffile: 2024.1.30 tinyarray: 1.2.4 tornado: 6.4.1 traitlets: 5.14.2 typing-extensions: 4.12.2 tzdata: 2024.1 urllib3: 2.2.1 wcwidth: 0.2.13 webcolors: 1.13 wheel: 0.43.0 wheel-filename: 1.4.1 widgetsnbextension: 4.0.11 }}} " defect closed normal Window Toolkit duplicate all ChimeraX